RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5980
(103 letters)
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase,
phosphotransferase; HET: SEP; 2.40A {Oryctolagus
cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1
PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Length = 561
Score = 118 bits (298), Expect = 5e-33
Identities = 56/98 (57%), Positives = 71/98 (72%), Gaps = 3/98 (3%)
Query: 5 AQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFL 64
F V+++DSVE Y +++ IFDF L+ L+ G + K+ I++MHGV GPYVKKI
Sbjct: 181 KPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNR---LKIRIDAMHGVVGPYVKKILC 237
Query: 65 EELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAM 102
EELGA ++AVN PL DFGGHHPDPNLTYAADLV+ M
Sbjct: 238 EELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETM 275
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis,
isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1
c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Length = 572
Score = 112 bits (283), Expect = 7e-31
Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Query: 2 VDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKK 61
++ + F+V V+D+V+ Y QLM+++FDF L+KG F + MHGV GPY K
Sbjct: 193 LEKSHFEVKVVDTVQDYTQLMQKLFDFD----LLKGLFSNKDFSFRFDGMHGVAGPYAKH 248
Query: 62 IFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAM 102
IF LG ++ +N P DFGG HPDPNLTYA DLV+ +
Sbjct: 249 IFGTLLGCSKESLLNCDPSEDFGGGHPDPNLTYAHDLVELL 289
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A
{Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Length = 570
Score = 96.6 bits (241), Expect = 4e-25
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 10/98 (10%)
Query: 5 AQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFL 64
A V +D V+ +++ + +I D I+ + L ++ + G Y K+I
Sbjct: 222 ASGHVKAVDLVQPFVEGLADIVDMA----AIQKA----GLTLGVDPLGGSGIEYWKRI-A 272
Query: 65 EELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAM 102
E VN F H D + D
Sbjct: 273 EHYKLNLT-LVNDQVDQTFRFMHLDKDGAIRMDCSSEC 309
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding,
structural genomics; 2.52A {Thermus thermophilus}
Length = 524
Score = 75.0 bits (185), Expect = 2e-17
Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 14/107 (13%)
Query: 3 DGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKI 62
A + D +Y++ + E D I+ S ++ ++ + G + +++
Sbjct: 178 REALARAKPFDYAGLYVEKVAEAVDLE----AIRAS----GLRIGVDPLGGASLRVWERL 229
Query: 63 F------LEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQ 103
LE + D P G D + YA + A++
Sbjct: 230 AESHGLPLEVVNPTLDPTFRFMPKDHDGKIRMDCSSPYAMAGLLALK 276
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis
of alginate, structural genomics; 1.70A {Thermus
thermophilus}
Length = 464
Score = 49.1 bits (118), Expect = 2e-08
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 9 VDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELG 68
+ +D E Y + +K D + G S L +SM G ++K L +G
Sbjct: 151 YETLDLREAYFEALKAHLDL----KALSGFS----GVLYHDSMGGAGAGFLKGF-LRHVG 201
Query: 69 AQPD-NAVNTTPLPDFGGHHPDPNLTYAADLVQAM 102
+ + P P F G +P+P + +
Sbjct: 202 LEIPVRPIREEPHPLFHGVNPEPIPKNLGVTLAVL 236
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase,
phosphoserine, enzyme complex, enzyme-metal complex,
isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa}
SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A*
1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A*
3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Length = 463
Score = 38.4 bits (90), Expect = 1e-04
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 31 LQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDP 90
+ + + P K++++ +GV G ++ E LG + +F HHPDP
Sbjct: 160 FKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLI-EALGCSVI-PLYCEVDGNFPNHHPDP 217
Query: 91 ----NLTYAADLVQAMQ 103
NL DL+ ++
Sbjct: 218 GKPENL---KDLIAKVK 231
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural
genomics, seattle structural genomics center for
infectious disease; 1.95A {Burkholderia thailandensis}
Length = 485
Score = 38.0 bits (89), Expect = 1e-04
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 21/100 (21%)
Query: 8 QVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEEL 67
+ D + Y++ + + P KL++++ +GV GP ++F + L
Sbjct: 171 SYEQYDVADQYVERIVGDIKLTR------------PLKLVVDAGNGVAGPLATRLF-KAL 217
Query: 68 GAQPDNAVNTTPLPDFGGHHPDP----NLTYAADLVQAMQ 103
G + + T +F HHPDP NL D++ ++
Sbjct: 218 GCELV-ELFTDIDGNFPNHHPDPAHPENL---QDVIAKLK 253
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.016
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 3 DGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKI 62
+ + Q D + V+ + FD +Q + K + +I S V+G ++
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL--RL 67
Query: 63 FLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQA 101
F L ++ + V F N + ++
Sbjct: 68 F-WTLLSKQEEMVQ-----KFVEEVLRINYKFLMSPIKT 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.10
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 28/109 (25%)
Query: 5 AQF--QVDVIDSVEVYLQLMKEIFD--FPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVK 60
A F Q + + Y + +++++ + LIK S+ LI + + +
Sbjct: 158 AIFGGQ----GNTDDYFEELRDLYQTYHVLVGDLIKFSAET--LSELIRTTLDAEKVFTQ 211
Query: 61 KIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAA------DLVQAMQ 103
+ + E P TP D+ L ++Q
Sbjct: 212 GLNILEWLENPS----NTPDKDY--------LLSIPISCPLIGVIQLAH 248
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B
polymer alpha family polymerase, transferase; 2.10A
{Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A
2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A*
4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Length = 775
Score = 26.6 bits (59), Expect = 1.5
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 20 QLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTG 56
+ MK D + + L K+L NS +G G
Sbjct: 465 RKMKATVDPLEKKLLDYRQRA---IKILANSFYGYYG 498
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET:
DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5
e.8.1.1
Length = 847
Score = 25.6 bits (56), Expect = 3.2
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 45 KLLINSMHGVTG 56
K+ IN+ +GV G
Sbjct: 568 KVFINATYGVFG 579
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 25.7 bits (55), Expect = 3.8
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 16 EVYLQLMKEIFDFPKLQSLIKG 37
E+Y Q+ K++ P S +G
Sbjct: 176 EIYCQISKQLTHNPSKSSYARG 197
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.410
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,709,845
Number of extensions: 91807
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 19
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)