RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5980
         (103 letters)



>d3pmga2 c.84.1.1 (A:191-303) Phosphoglucomutase {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 113

 Score = 65.2 bits (158), Expect = 8e-16
 Identities = 52/88 (59%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 15  VEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNA 74
           VE Y  +++ IFDF  L+ L+ G +     K+ I++MHGV GPYVKKI  EELGA  ++A
Sbjct: 1   VEAYATMLRNIFDFNALKELLSGPNR---LKIRIDAMHGVVGPYVKKILCEELGAPANSA 57

Query: 75  VNTTPLPDFGGHHPDPNLTYAADLVQAM 102
           VN  PL DFGGHHPDPNLTYAADLV+ M
Sbjct: 58  VNCVPLEDFGGHHPDPNLTYAADLVETM 85


>d1kfia2 c.84.1.1 (A:206-323) Exocytosis-sensitive phosphoprotein,
           pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
          Length = 118

 Score = 60.2 bits (145), Expect = 9e-14
 Identities = 41/89 (46%), Positives = 52/89 (58%), Gaps = 4/89 (4%)

Query: 15  VEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNA 74
           V+ Y QLM+++FDF  L+ L         F    + MHGV GPY K IF   LG   ++ 
Sbjct: 1   VQDYTQLMQKLFDFDLLKGLFSNK----DFSFRFDGMHGVAGPYAKHIFGTLLGCSKESL 56

Query: 75  VNTTPLPDFGGHHPDPNLTYAADLVQAMQ 103
           +N  P  DFGG HPDPNLTYA DLV+ + 
Sbjct: 57  LNCDPSEDFGGGHPDPNLTYAHDLVELLD 85


>d1p5dx2 c.84.1.1 (X:155-258)
          Phosphomannomutase/phosphoglucomutase {Pseudomonas
          aeruginosa [TaxId: 287]}
          Length = 104

 Score = 28.5 bits (63), Expect = 0.069
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 31 LQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDP 90
           + +    +   P K++++  +GV G    ++            +      +F  HHPDP
Sbjct: 6  FKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEA--LGCSVIPLYCEVDGNFPNHHPDP 63

Query: 91 N 91
           
Sbjct: 64 G 64


>d2sici_ d.84.1.1 (I:) Subtilisin inhibitor {Streptomyces
          albogriseolus, s-3253 [TaxId: 1887]}
          Length = 107

 Score = 24.4 bits (53), Expect = 2.3
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 68 GAQPDNAVNTTPLPDFGGHHPDP 90
           A P+ AV  T  P   G HP  
Sbjct: 18 TAAPERAVTLTCAPGPSGTHPAA 40


>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
           [TaxId: 1063]}
          Length = 288

 Score = 24.9 bits (54), Expect = 2.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 22  MKEIFDFPKLQSLIKGS 38
                DFP L S+I GS
Sbjct: 236 NPRGIDFPYLTSMIHGS 252


>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
          {Thermus thermophilus [TaxId: 274]}
          Length = 247

 Score = 24.0 bits (52), Expect = 4.4
 Identities = 12/50 (24%), Positives = 20/50 (40%)

Query: 20 QLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGA 69
          + +KEI +F K  S       R P  +L+    GV   ++ +    E   
Sbjct: 19 EELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV 68


>d1zy9a1 b.30.5.11 (A:1-177) Alpha-galactosidase GalA N-terminal
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 177

 Score = 23.7 bits (51), Expect = 5.5
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 61  KIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLV 99
             +LE    + D+ V   PL      +    L   A+LV
Sbjct: 133 VAYLEYFDVEFDDFVPLEPLVVLEDPNTPLLLEKYAELV 171


>d1kfia1 c.84.1.1 (A:3-205) Exocytosis-sensitive phosphoprotein,
           pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
          Length = 203

 Score = 23.1 bits (49), Expect = 8.6
 Identities = 4/13 (30%), Positives = 10/13 (76%)

Query: 2   VDGAQFQVDVIDS 14
           ++ + F+V V+D+
Sbjct: 191 LEKSHFEVKVVDT 203


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0495    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 407,617
Number of extensions: 17555
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 8
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)