BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5981
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LXT|A Chain A, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1LXT|B Chain B, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1C47|A Chain A, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C47|B Chain B, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C4G|A Chain A, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
pdb|1C4G|B Chain B, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
Length = 561
Score = 115 bits (287), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 85/118 (72%), Gaps = 3/118 (2%)
Query: 4 KSVTVETKVFDGQKPGTSGLRKPTKTFQQE-HYTENFIQSILTALG-DKLKGSVLVVGGD 61
K VTV+TK + QKPGTSGLRK K FQ +Y ENFIQSI++ + + + + LVVGGD
Sbjct: 2 KIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGD 61
Query: 62 GRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRK-HILGRLVKVPSSNP 118
GR++ A+ I++I+AANG+ +L++GQNGILSTPAVS +IRK +G ++ S NP
Sbjct: 62 GRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNP 119
>pdb|1JDY|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1JDY|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|3PMG|A Chain A, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
pdb|3PMG|B Chain B, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
Length = 561
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 84/118 (71%), Gaps = 3/118 (2%)
Query: 4 KSVTVETKVFDGQKPGTSGLRKPTKTFQQE-HYTENFIQSILTALG-DKLKGSVLVVGGD 61
K VTV+TK + QKPGTSGLRK K FQ +Y ENFIQSI++ + + + + LVVGGD
Sbjct: 2 KIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGD 61
Query: 62 GRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRK-HILGRLVKVPSSNP 118
GR++ A+ I++I+AANG+ +L++GQNGILSTPAVS +IRK +G ++ NP
Sbjct: 62 GRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTAXHNP 119
>pdb|1KFI|A Chain A, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFI|B Chain B, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
pdb|1KFQ|B Chain B, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
Length = 572
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 75/117 (64%), Gaps = 8/117 (6%)
Query: 10 TKVFDGQKPGTSGLRKPTKTFQQEHYTENFIQSILTAL-GDKLK-GSVLVVGGDGRYFGD 67
T+ + GQKPGTSGLRK Q +Y ENF+QSI L D+LK +VL VGGDGRYF
Sbjct: 13 TQPYAGQKPGTSGLRKKVSEATQPNYLENFVQSIFNTLRKDELKPKNVLFVGGDGRYFNR 72
Query: 68 VAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRK------HILGRLVKVPSSNP 118
A+ II+++ AN ++++ VGQ G++STPA S IRK + +G ++ S NP
Sbjct: 73 QAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGIILTASHNP 129
>pdb|3OLP|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
pdb|3OLP|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
Length = 570
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 17 KPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLV----VGGDGRYFGDVAVDK 72
K GTSG R + + E I +I A+ ++ + + VG D + A
Sbjct: 65 KFGTSGHRGSAG---RHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFIS 121
Query: 73 IIKISAANGVAKLIVGQNGILSTPAVSALIRKH------ILGRLVKVPSSNP 118
++++ AANGV ++ NG TPAVS I H + +V PS NP
Sbjct: 122 VLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNP 173
>pdb|3NA5|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens.
pdb|3NA5|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens
Length = 570
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 17 KPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLV----VGGDGRYFGDVAVDK 72
K GTSG R + + E I +I A+ ++ + + VG D + A
Sbjct: 65 KFGTSGHRGSAG---RHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFIS 121
Query: 73 IIKISAANGVAKLIVGQNGILSTPAVSALIRKH------ILGRLVKVPSSNP 118
++++ AANGV ++ NG TPAVS I H + +V PS NP
Sbjct: 122 VLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNP 173
>pdb|2FUV|A Chain A, Phosphoglucomutase From Salmonella Typhimurium.
pdb|2FUV|B Chain B, Phosphoglucomutase From Salmonella Typhimurium
Length = 549
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 17 KPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLV----VGGDGRYFGDVAVDK 72
K GTSG R + + E I +I A+ ++ + + VG D + A
Sbjct: 44 KFGTSGHRGSAG---RHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFIS 100
Query: 73 IIKISAANGVAKLIVGQNGILSTPAVSALIRKH------ILGRLVKVPSSNP 118
++++ AANGV ++ NG TPAVS I H + +V PS NP
Sbjct: 101 VLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNP 152
>pdb|1WW1|A Chain A, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|1WW1|B Chain B, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|2E7Y|A Chain A, High Resolution Structure Of T. Maritima Trnase Z
pdb|2E7Y|B Chain B, High Resolution Structure Of T. Maritima Trnase Z
Length = 280
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 36 TENFIQSILTALGDKL-------KGSVLVV-------GGDGRYFGDVAVDKIIKISAANG 81
TE + + +LT GD L +G+ L++ D RY A+D++++ A G
Sbjct: 177 TEEYHKKVLTISGDSLALDPEEIRGTELLIHECTFLDARDRRYKNHAAIDEVMESVKAAG 236
Query: 82 VAKLIVGQNGILSTPAVSALIRKH 105
V K+I+ + ++I+K+
Sbjct: 237 VKKVILYHISTRYIRQLKSVIKKY 260
>pdb|1XEZ|A Chain A, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Pro-Toxin With Octylglucoside Bound
Length = 721
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 1 MSFKSVTVETKVFDGQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKL-KGSVLVVG 59
+S +++T T VF+ Q+ K QQ +N + A D L S L+VG
Sbjct: 574 VSLRTITAYTDVFNAQESSPILGYTQGKMNQQRVGQDNRLYVRAGAAIDALGSASDLLVG 633
Query: 60 GDGRYFGDVAVDKIIKISAANG 81
G+G V + + I+A +G
Sbjct: 634 GNGGSLSSVDLSGVKSITATSG 655
>pdb|3O44|A Chain A, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|B Chain B, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|C Chain C, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|D Chain D, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|E Chain E, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|F Chain F, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|G Chain G, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|H Chain H, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|I Chain I, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|J Chain J, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|K Chain K, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|L Chain L, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|M Chain M, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|N Chain N, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
Length = 593
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 1 MSFKSVTVETKVFDGQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKL-KGSVLVVG 59
+S +++T T VF+ Q+ K QQ +N + A D L S L+VG
Sbjct: 446 VSLRTITAYTDVFNAQESSPILGYTQGKMNQQRVGQDNRLYVRAGAAIDALGSASDLLVG 505
Query: 60 GDGRYFGDVAVDKIIKISAANG 81
G+G V + + I+A +G
Sbjct: 506 GNGGSLSSVDLSGVKSITATSG 527
>pdb|4HTG|A Chain A, Porphobilinogen Deaminase From Arabidopsis Thaliana
Length = 320
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 87 VGQNGILSTPAVSALIRKHI---LGRLVKVPSSNPSRTIRPCPL 127
+G G+ + ALI HI + + VP+ P +TI PC L
Sbjct: 67 IGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTILPCNL 110
>pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 18/82 (21%)
Query: 19 GTSGLRKPTKTFQQE------HYTENFIQSILTALGD---KLKGSVLVVGGDGRYFGDVA 69
G +GL K + F+ E +N +++I L D K+K ++VVG +
Sbjct: 58 GVAGLNKSVEEFENELKNKLTEEAKNKMENIKKELEDVGFKVK-DIIVVG--------IP 108
Query: 70 VDKIIKISAANGVAKLIVGQNG 91
++I+KI+ GV +I+G +G
Sbjct: 109 HEEIVKIAEDEGVDIIIMGSHG 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,834,129
Number of Sequences: 62578
Number of extensions: 147326
Number of successful extensions: 359
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 14
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)