Query psy5981
Match_columns 131
No_of_seqs 165 out of 1233
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 23:32:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03085 PGM1 Phosphoglucomutas 100.0 8.7E-37 1.9E-41 265.5 13.5 119 6-124 1-124 (548)
2 PLN02307 phosphoglucomutase 100.0 2.4E-36 5.2E-41 264.3 14.3 122 2-123 9-138 (579)
3 PTZ00150 phosphoglucomutase-2- 100.0 1.4E-34 2.9E-39 252.9 10.6 118 5-124 34-159 (584)
4 PF02878 PGM_PMM_I: Phosphoglu 100.0 1.3E-33 2.7E-38 205.7 10.3 105 16-123 2-108 (137)
5 COG1109 {ManB} Phosphomannomut 100.0 5.3E-33 1.1E-37 237.0 12.3 107 14-124 6-113 (464)
6 PRK07564 phosphoglucomutase; V 100.0 9.6E-33 2.1E-37 239.5 13.1 122 3-124 25-153 (543)
7 PRK14324 glmM phosphoglucosami 100.0 2.4E-32 5.1E-37 231.9 12.0 106 16-124 2-108 (446)
8 PRK14317 glmM phosphoglucosami 100.0 9.9E-32 2.1E-36 228.9 12.5 111 11-124 12-124 (465)
9 PRK14323 glmM phosphoglucosami 100.0 1.1E-31 2.4E-36 226.9 12.5 108 14-124 2-111 (440)
10 cd03089 PMM_PGM The phosphoman 100.0 1.1E-31 2.3E-36 227.0 12.2 103 17-123 1-104 (443)
11 cd05802 GlmM GlmM is a bacteri 100.0 1.2E-31 2.7E-36 226.1 12.4 105 17-124 1-106 (434)
12 PRK14316 glmM phosphoglucosami 100.0 1.5E-31 3.3E-36 226.3 12.1 106 15-123 1-108 (448)
13 PRK15414 phosphomannomutase Cp 100.0 1.3E-31 2.9E-36 227.8 11.6 102 16-124 5-107 (456)
14 TIGR01132 pgm phosphoglucomuta 100.0 2.2E-31 4.8E-36 231.0 12.7 111 14-124 37-154 (543)
15 cd05801 PGM_like3 This bacteri 100.0 2.1E-31 4.6E-36 230.0 11.7 117 8-124 13-137 (522)
16 cd05803 PGM_like4 This PGM-lik 100.0 3.3E-31 7.2E-36 224.2 12.3 104 17-123 1-105 (445)
17 PRK14315 glmM phosphoglucosami 100.0 3.7E-31 8.1E-36 224.3 12.4 108 14-124 2-111 (448)
18 cd05805 MPG1_transferase GTP-m 100.0 2.1E-31 4.6E-36 225.0 10.7 101 17-123 1-102 (441)
19 PRK14320 glmM phosphoglucosami 100.0 3.9E-31 8.4E-36 223.9 11.5 105 16-123 3-109 (443)
20 PRK14318 glmM phosphoglucosami 100.0 7.5E-31 1.6E-35 222.5 12.7 105 16-123 3-112 (448)
21 PRK14321 glmM phosphoglucosami 100.0 5.4E-31 1.2E-35 223.5 10.8 102 16-124 3-105 (449)
22 TIGR01455 glmM phosphoglucosam 100.0 1.1E-30 2.4E-35 221.0 12.5 104 18-124 1-107 (443)
23 cd05800 PGM_like2 This PGM-lik 100.0 1E-30 2.2E-35 221.7 12.3 107 16-124 1-109 (461)
24 PRK14314 glmM phosphoglucosami 100.0 1.2E-30 2.6E-35 221.3 11.9 106 15-123 3-110 (450)
25 cd05799 PGM2 This CD includes 100.0 1.5E-30 3.3E-35 222.1 11.9 106 16-124 2-115 (487)
26 PRK10887 glmM phosphoglucosami 100.0 3.2E-30 7E-35 218.3 12.4 105 16-124 2-108 (443)
27 cd03088 ManB ManB is a bacteri 100.0 4.1E-30 9E-35 218.6 12.4 104 17-124 1-104 (459)
28 PRK09542 manB phosphomannomuta 100.0 3.3E-30 7.1E-35 218.6 11.2 102 18-124 1-103 (445)
29 PRK14322 glmM phosphoglucosami 100.0 2.3E-30 5E-35 218.5 9.7 103 15-124 3-105 (429)
30 cd03087 PGM_like1 This archaea 100.0 1.4E-29 3E-34 213.7 10.8 100 17-123 1-100 (439)
31 PRK14319 glmM phosphoglucosami 100.0 1.6E-29 3.5E-34 213.3 10.5 100 16-123 2-101 (430)
32 PLN02371 phosphoglucosamine mu 100.0 4.5E-29 9.7E-34 218.4 11.7 106 16-124 66-186 (583)
33 KOG1220|consensus 100.0 2.6E-28 5.7E-33 211.4 9.8 108 15-124 59-172 (607)
34 COG0033 Pgm Phosphoglucomutase 99.9 1.8E-27 3.8E-32 201.8 11.8 123 1-123 1-130 (524)
35 KOG0625|consensus 99.9 8.1E-27 1.8E-31 196.9 12.0 123 1-123 1-126 (558)
36 cd03084 phosphohexomutase The 99.1 3.7E-11 8E-16 99.1 3.8 28 17-44 1-28 (355)
37 PLN02895 phosphoacetylglucosam 99.0 3.5E-09 7.7E-14 93.3 9.7 50 53-105 127-176 (562)
38 PTZ00302 N-acetylglucosamine-p 98.9 9.6E-09 2.1E-13 91.0 9.6 50 53-105 152-202 (585)
39 cd03086 PGM3 PGM3 (phosphogluc 98.8 6.6E-09 1.4E-13 90.6 7.0 54 52-108 101-155 (513)
40 PLN02895 phosphoacetylglucosam 98.6 4E-08 8.6E-13 86.8 4.8 44 71-124 32-76 (562)
41 cd03086 PGM3 PGM3 (phosphogluc 98.2 7.5E-07 1.6E-11 77.8 1.8 18 107-124 36-53 (513)
42 PTZ00302 N-acetylglucosamine-p 98.1 1.3E-06 2.8E-11 77.6 1.9 18 106-123 75-92 (585)
43 KOG2537|consensus 97.2 0.00045 9.7E-09 60.5 4.8 56 54-112 125-180 (539)
44 KOG2537|consensus 96.9 0.00038 8.1E-09 61.0 1.2 19 106-124 59-77 (539)
45 PRK08621 galactose-6-phosphate 85.7 7.4 0.00016 29.0 7.9 59 55-115 2-65 (142)
46 COG0426 FpaA Uncharacterized f 85.5 7 0.00015 33.7 8.7 57 54-114 247-305 (388)
47 TIGR01118 lacA galactose-6-pho 84.2 9.7 0.00021 28.3 7.9 59 55-115 2-65 (141)
48 PF02502 LacAB_rpiB: Ribose/Ga 82.9 8 0.00017 28.5 7.1 59 55-115 1-66 (140)
49 PRK12613 galactose-6-phosphate 82.8 10 0.00022 28.2 7.6 58 55-115 2-64 (141)
50 PRK05571 ribose-5-phosphate is 80.5 16 0.00035 27.3 8.0 59 55-115 2-68 (148)
51 TIGR01120 rpiB ribose 5-phosph 76.8 20 0.00044 26.6 7.5 58 56-115 2-66 (143)
52 cd01988 Na_H_Antiporter_C The 74.7 16 0.00035 24.5 6.2 63 68-131 56-132 (132)
53 TIGR01119 lacB galactose-6-pho 74.6 26 0.00056 26.9 7.8 59 55-115 2-67 (171)
54 TIGR02133 RPI_actino ribose 5- 74.2 29 0.00063 25.9 7.8 59 55-115 2-68 (148)
55 PRK08622 galactose-6-phosphate 73.9 30 0.00064 26.6 8.0 59 55-115 2-67 (171)
56 cd03364 TOPRIM_DnaG_primases T 72.9 11 0.00024 24.2 4.8 34 54-87 44-77 (79)
57 PTZ00215 ribose 5-phosphate is 71.6 32 0.00069 25.8 7.5 59 55-115 4-71 (151)
58 PRK12615 galactose-6-phosphate 71.5 30 0.00066 26.5 7.5 59 55-115 2-67 (171)
59 PRK05452 anaerobic nitric oxid 71.0 45 0.00098 29.1 9.4 61 53-117 251-316 (479)
60 PRK11921 metallo-beta-lactamas 70.0 31 0.00067 29.0 8.0 62 53-118 247-313 (394)
61 PRK09271 flavodoxin; Provision 70.0 11 0.00025 27.5 4.8 29 56-84 3-32 (160)
62 TIGR00640 acid_CoA_mut_C methy 69.4 15 0.00032 26.6 5.2 51 58-114 10-61 (132)
63 TIGR00689 rpiB_lacA_lacB sugar 69.0 29 0.00064 25.8 6.8 58 56-115 1-65 (144)
64 PF00258 Flavodoxin_1: Flavodo 64.2 20 0.00044 25.0 5.0 48 64-117 8-57 (143)
65 PRK05569 flavodoxin; Provision 63.2 49 0.0011 23.1 6.9 32 55-86 3-35 (141)
66 COG0698 RpiB Ribose 5-phosphat 63.2 40 0.00087 25.4 6.6 59 55-115 2-68 (151)
67 PRK01713 ornithine carbamoyltr 62.6 30 0.00065 28.9 6.4 66 52-120 155-221 (334)
68 PRK07200 aspartate/ornithine c 62.5 23 0.00049 30.5 5.8 67 52-120 186-258 (395)
69 cd06533 Glyco_transf_WecG_TagA 62.4 24 0.00052 26.3 5.4 55 62-121 27-84 (171)
70 COG2185 Sbm Methylmalonyl-CoA 61.7 22 0.00047 26.6 4.9 41 53-99 12-55 (143)
71 TIGR02370 pyl_corrinoid methyl 60.7 73 0.0016 24.3 10.2 59 54-118 85-147 (197)
72 PRK06756 flavodoxin; Provision 60.3 58 0.0012 23.1 6.9 33 55-87 3-36 (148)
73 PF00582 Usp: Universal stress 59.7 19 0.00041 23.6 4.0 34 54-87 3-36 (140)
74 PRK03767 NAD(P)H:quinone oxido 58.9 76 0.0016 23.9 7.7 33 55-87 3-37 (200)
75 PRK02261 methylaspartate mutas 58.2 68 0.0015 23.2 7.8 50 59-114 12-62 (137)
76 PRK03692 putative UDP-N-acetyl 58.1 20 0.00044 28.7 4.5 55 62-120 86-141 (243)
77 PRK05568 flavodoxin; Provision 58.1 30 0.00064 24.3 5.0 32 56-87 4-36 (142)
78 COG2885 OmpA Outer membrane pr 57.9 35 0.00076 25.5 5.6 48 37-84 99-154 (190)
79 PF03808 Glyco_tran_WecB: Glyc 56.9 40 0.00086 25.1 5.7 54 62-120 29-85 (172)
80 PRK03515 ornithine carbamoyltr 56.6 28 0.0006 29.2 5.3 66 52-120 155-221 (336)
81 cd02072 Glm_B12_BD B12 binding 56.4 36 0.00077 24.8 5.2 51 58-114 7-58 (128)
82 PF13662 Toprim_4: Toprim doma 56.0 13 0.00029 24.0 2.6 33 54-86 47-79 (81)
83 PF13362 Toprim_3: Toprim doma 55.8 45 0.00098 22.0 5.4 35 53-87 41-77 (96)
84 TIGR01753 flav_short flavodoxi 55.0 52 0.0011 22.6 5.8 30 58-87 3-33 (140)
85 cd01989 STK_N The N-terminal d 53.4 22 0.00048 24.6 3.7 33 55-87 1-33 (146)
86 TIGR02764 spore_ybaN_pdaB poly 52.7 53 0.0012 24.3 5.9 36 52-87 150-187 (191)
87 PF07881 Fucose_iso_N1: L-fuco 52.7 18 0.00039 27.9 3.2 65 34-104 25-93 (171)
88 KOG2451|consensus 52.4 28 0.0006 30.6 4.6 52 64-119 171-229 (503)
89 PRK04523 N-acetylornithine car 52.3 33 0.00072 28.7 5.1 69 52-120 168-240 (335)
90 TIGR02884 spore_pdaA delta-lac 52.3 62 0.0013 25.0 6.3 35 53-87 186-220 (224)
91 TIGR01501 MthylAspMutase methy 51.6 47 0.001 24.3 5.2 51 58-114 9-60 (134)
92 PRK00536 speE spermidine synth 51.0 27 0.00057 28.4 4.2 37 80-119 138-175 (262)
93 COG3910 Predicted ATPase [Gene 50.8 26 0.00056 28.1 3.9 59 61-119 128-189 (233)
94 cd02071 MM_CoA_mut_B12_BD meth 50.6 55 0.0012 22.8 5.3 39 74-115 20-59 (122)
95 KOG2882|consensus 49.3 26 0.00057 29.3 3.9 40 54-94 155-194 (306)
96 cd02069 methionine_synthase_B1 49.3 1.2E+02 0.0027 23.5 10.1 57 53-115 88-148 (213)
97 PF09195 Endonuc-BglII: Restri 48.5 9.1 0.0002 28.9 1.1 15 106-120 114-128 (164)
98 TIGR01755 flav_wrbA NAD(P)H:qu 47.3 87 0.0019 23.7 6.4 33 55-87 2-36 (197)
99 PRK08105 flavodoxin; Provision 47.3 84 0.0018 22.8 6.0 53 56-116 4-59 (149)
100 PF13458 Peripla_BP_6: Peripla 46.5 76 0.0017 24.8 6.1 48 38-85 120-167 (343)
101 PRK09004 FMN-binding protein M 46.2 73 0.0016 23.0 5.6 43 64-116 13-57 (146)
102 PRK06703 flavodoxin; Provision 46.0 54 0.0012 23.4 4.8 32 56-87 4-36 (151)
103 TIGR01754 flav_RNR ribonucleot 45.1 41 0.00088 23.8 4.0 11 91-101 64-74 (140)
104 PRK02102 ornithine carbamoyltr 44.8 54 0.0012 27.5 5.2 66 52-120 154-220 (331)
105 PF12965 DUF3854: Domain of un 44.5 66 0.0014 23.2 5.0 36 52-87 67-108 (130)
106 PRK04284 ornithine carbamoyltr 44.3 49 0.0011 27.6 4.9 66 52-120 154-220 (332)
107 KOG2427|consensus 44.3 8.5 0.00018 33.2 0.3 9 120-128 33-41 (391)
108 cd06359 PBP1_Nba_like Type I p 43.1 1.5E+02 0.0032 23.4 7.4 63 56-123 40-104 (333)
109 cd06349 PBP1_ABC_ligand_bindin 42.5 1.4E+02 0.003 23.6 7.1 67 56-127 42-110 (340)
110 cd02067 B12-binding B12 bindin 42.3 98 0.0021 21.0 5.5 11 77-87 46-56 (119)
111 PF11823 DUF3343: Protein of u 41.9 35 0.00076 21.8 2.9 25 67-97 11-35 (73)
112 PRK06696 uridine kinase; Valid 41.7 1.2E+02 0.0025 23.2 6.4 42 53-94 20-63 (223)
113 cd02070 corrinoid_protein_B12- 40.6 1.6E+02 0.0035 22.3 9.9 57 53-115 82-142 (201)
114 smart00493 TOPRIM topoisomeras 40.6 77 0.0017 19.5 4.4 28 54-81 48-75 (76)
115 COG0191 Fba Fructose/tagatose 38.9 1.7E+02 0.0037 24.3 7.2 66 55-122 44-114 (286)
116 TIGR03316 ygeW probable carbam 38.5 90 0.002 26.5 5.6 66 53-120 170-241 (357)
117 COG1922 WecG Teichoic acid bio 38.5 2.2E+02 0.0047 23.2 8.8 55 56-113 136-192 (253)
118 TIGR00670 asp_carb_tr aspartat 38.4 85 0.0018 25.8 5.4 64 51-120 148-212 (301)
119 cd06342 PBP1_ABC_LIVBP_like Ty 37.8 1.9E+02 0.0042 22.4 9.5 48 40-87 122-169 (334)
120 PRK14088 dnaA chromosomal repl 37.8 1.3E+02 0.0027 26.0 6.5 43 81-123 194-243 (440)
121 TIGR00646 MG010 DNA primase-re 36.6 81 0.0018 25.1 4.8 34 54-87 155-188 (218)
122 cd01029 TOPRIM_primases TOPRIM 35.9 1.1E+02 0.0024 19.1 4.8 33 54-86 44-76 (79)
123 PRK04017 hypothetical protein; 35.1 87 0.0019 23.0 4.4 32 53-84 65-96 (132)
124 PF04069 OpuAC: Substrate bind 34.2 1.5E+02 0.0033 22.9 6.0 33 55-87 2-34 (257)
125 cd06335 PBP1_ABC_ligand_bindin 33.2 1.4E+02 0.003 23.9 5.8 48 40-87 125-172 (347)
126 smart00764 Citrate_ly_lig Citr 32.6 65 0.0014 24.5 3.6 55 51-105 106-161 (182)
127 PRK12562 ornithine carbamoyltr 32.5 1.1E+02 0.0024 25.7 5.2 65 52-119 155-220 (334)
128 PRK10116 universal stress prot 32.4 1.3E+02 0.0027 20.6 4.8 32 55-86 5-36 (142)
129 PF10178 DUF2372: Uncharacteri 32.2 1.7E+02 0.0036 20.0 6.0 48 33-80 41-88 (90)
130 cd03413 CbiK_C Anaerobic cobal 32.1 1.2E+02 0.0027 20.8 4.6 8 77-84 51-58 (103)
131 cd03556 L-fucose_isomerase L-f 31.7 1.6E+02 0.0035 26.9 6.3 60 36-101 24-87 (584)
132 TIGR00696 wecB_tagA_cpsF bacte 31.6 1.4E+02 0.0031 22.5 5.3 51 63-118 30-83 (177)
133 cd07473 Peptidases_S8_Subtilis 31.6 2.3E+02 0.0051 21.5 8.1 62 61-123 101-163 (259)
134 PRK09982 universal stress prot 31.5 1.3E+02 0.0029 20.9 4.9 34 54-87 4-37 (142)
135 cd06345 PBP1_ABC_ligand_bindin 31.1 2.6E+02 0.0056 22.1 7.0 36 51-86 142-177 (344)
136 PHA02031 putative DnaG-like pr 30.9 1E+02 0.0023 25.3 4.6 34 54-87 207-240 (266)
137 PRK09860 putative alcohol dehy 30.8 1.2E+02 0.0026 25.5 5.2 44 54-99 32-75 (383)
138 PRK07308 flavodoxin; Validated 30.6 1.3E+02 0.0028 21.2 4.7 30 56-85 4-34 (146)
139 cd06343 PBP1_ABC_ligand_bindin 30.6 2.8E+02 0.006 22.1 8.3 65 56-124 49-114 (362)
140 cd01471 vWA_micronemal_protein 30.2 1.7E+02 0.0038 21.1 5.5 63 54-130 110-172 (186)
141 COG0683 LivK ABC-type branched 30.0 3.1E+02 0.0067 22.4 9.2 77 40-118 135-215 (366)
142 PF12146 Hydrolase_4: Putative 29.3 1.4E+02 0.0031 19.3 4.3 33 55-88 18-50 (79)
143 PF03853 YjeF_N: YjeF-related 28.0 2.5E+02 0.0054 20.7 7.7 76 35-112 4-85 (169)
144 PRK10953 cysJ sulfite reductas 27.6 1.8E+02 0.0039 26.3 6.0 55 54-116 62-119 (600)
145 COG1867 TRM1 N2,N2-dimethylgua 27.5 2.5E+02 0.0055 24.3 6.5 38 80-118 120-158 (380)
146 PRK14719 bifunctional RNAse/5- 27.4 57 0.0012 27.6 2.7 32 54-85 68-99 (360)
147 PLN02527 aspartate carbamoyltr 27.4 3.2E+02 0.0069 22.5 7.0 64 51-119 149-213 (306)
148 cd06339 PBP1_YraM_LppC_lipopro 27.1 1.8E+02 0.0039 23.3 5.5 47 40-87 112-158 (336)
149 PF14630 ORC5_C: Origin recogn 26.9 16 0.00036 29.1 -0.6 27 93-122 129-156 (271)
150 cd06349 PBP1_ABC_ligand_bindin 26.6 2.4E+02 0.0053 22.2 6.1 46 41-86 123-168 (340)
151 COG0078 ArgF Ornithine carbamo 26.5 1.9E+02 0.0041 24.3 5.5 65 52-120 152-217 (310)
152 COG4110 Uncharacterized protei 26.4 63 0.0014 25.1 2.5 51 12-64 40-92 (200)
153 PF14267 DUF4357: Domain of un 26.4 39 0.00084 21.0 1.2 31 54-84 15-45 (55)
154 cd01987 USP_OKCHK USP domain i 26.4 1.8E+02 0.0039 19.2 4.7 50 67-119 48-97 (124)
155 cd00293 USP_Like Usp: Universa 26.2 1.6E+02 0.0035 18.8 4.3 6 124-129 124-129 (130)
156 PRK11104 hemG protoporphyrinog 26.1 1.2E+02 0.0025 22.7 3.9 24 56-79 3-27 (177)
157 PF13458 Peripla_BP_6: Peripla 26.1 1.4E+02 0.0031 23.2 4.7 59 56-118 44-103 (343)
158 TIGR00658 orni_carb_tr ornithi 26.1 2.3E+02 0.0051 23.2 6.0 43 52-98 147-189 (304)
159 PRK02255 putrescine carbamoylt 25.9 1.8E+02 0.0038 24.4 5.3 66 51-120 152-218 (338)
160 cd06358 PBP1_NHase Type I peri 25.9 2.6E+02 0.0056 22.1 6.1 34 53-86 132-165 (333)
161 PRK09197 fructose-bisphosphate 25.7 1.3E+02 0.0028 25.7 4.4 52 69-122 80-144 (350)
162 cd00739 DHPS DHPS subgroup of 25.6 1.1E+02 0.0024 24.5 3.9 11 73-83 67-78 (257)
163 smart00460 TGc Transglutaminas 25.6 1.2E+02 0.0025 18.1 3.3 29 66-96 9-37 (68)
164 PRK10646 ADP-binding protein; 25.4 2.8E+02 0.0061 20.6 5.8 43 32-77 10-52 (153)
165 PF13676 TIR_2: TIR domain; PD 25.1 49 0.0011 21.6 1.5 11 67-77 37-47 (102)
166 PRK15404 leucine ABC transport 25.0 3.8E+02 0.0083 21.8 9.1 46 41-86 149-194 (369)
167 PRK15118 universal stress glob 24.8 1.9E+02 0.0041 19.8 4.6 32 55-86 5-36 (144)
168 PF04914 DltD_C: DltD C-termin 24.6 93 0.002 22.6 3.0 26 62-87 28-55 (130)
169 cd06343 PBP1_ABC_ligand_bindin 24.3 3.7E+02 0.0079 21.4 8.8 47 41-87 132-178 (362)
170 cd05564 PTS_IIB_chitobiose_lic 23.5 2.4E+02 0.0051 18.9 5.8 29 56-84 2-30 (96)
171 KOG1322|consensus 23.5 1.3E+02 0.0029 25.8 4.1 50 68-118 41-91 (371)
172 PF02007 MtrH: Tetrahydrometha 23.1 2.5E+02 0.0053 23.5 5.5 61 54-118 144-225 (296)
173 cd06355 PBP1_FmdD_like Peripla 23.1 3.9E+02 0.0085 21.3 8.1 44 43-86 123-166 (348)
174 cd02768 MopB_NADH-Q-OR-NuoG2 M 23.0 1.2E+02 0.0027 24.7 3.8 33 56-88 153-185 (386)
175 PRK11891 aspartate carbamoyltr 22.9 2.4E+02 0.0051 24.7 5.7 62 52-119 240-303 (429)
176 COG1780 NrdI Protein involved 22.8 58 0.0013 24.4 1.7 27 91-117 57-86 (141)
177 PF13840 ACT_7: ACT domain ; P 22.7 1.8E+02 0.0039 17.9 3.8 31 57-87 11-41 (65)
178 COG5402 Uncharacterized conser 22.5 29 0.00062 27.1 -0.0 30 93-122 123-152 (194)
179 PRK00779 ornithine carbamoyltr 22.5 2.3E+02 0.005 23.2 5.3 62 52-120 151-213 (304)
180 PF09717 CPW_WPC: Plasmodium f 22.5 45 0.00098 20.6 0.9 12 118-129 24-35 (60)
181 PRK15454 ethanol dehydrogenase 22.5 2E+02 0.0044 24.3 5.1 44 54-99 50-93 (395)
182 PRK15005 universal stress prot 22.4 2E+02 0.0044 19.5 4.4 7 124-130 137-143 (144)
183 TIGR01492 CPW_WPC Plasmodium f 22.4 45 0.00097 20.9 0.9 10 118-127 26-35 (62)
184 TIGR01089 fucI L-fucose isomer 22.3 2.6E+02 0.0056 25.6 5.9 67 20-87 12-82 (587)
185 PF02310 B12-binding: B12 bind 21.9 2.5E+02 0.0054 18.6 5.8 14 74-87 44-57 (121)
186 cd08188 Fe-ADH4 Iron-containin 21.7 2.3E+02 0.005 23.6 5.3 44 54-99 29-72 (377)
187 TIGR02873 spore_ylxY probable 21.7 3.2E+02 0.007 21.9 6.0 34 53-87 230-263 (268)
188 cd06329 PBP1_SBP_like_3 Peripl 21.6 3.3E+02 0.0072 21.6 6.0 47 40-86 130-178 (342)
189 cd00865 PEBP_bact_arch Phospha 21.6 67 0.0015 23.3 1.8 21 108-128 84-104 (150)
190 KOG2781|consensus 21.4 48 0.001 27.3 1.1 52 58-119 42-94 (290)
191 PLN03050 pyridoxine (pyridoxam 21.2 4.3E+02 0.0092 21.0 6.5 52 34-87 31-93 (246)
192 COG4874 Uncharacterized protei 21.0 1.1E+02 0.0024 25.4 3.1 27 71-97 60-86 (318)
193 PF00975 Thioesterase: Thioest 20.8 3E+02 0.0065 20.1 5.3 45 37-84 49-94 (229)
194 cd07492 Peptidases_S8_8 Peptid 20.8 3.6E+02 0.0079 20.1 8.3 58 64-123 75-136 (222)
195 cd04919 ACT_AK-Hom3_2 ACT doma 20.7 1.7E+02 0.0037 17.3 3.3 30 57-87 6-35 (66)
196 TIGR01114 mtrH N5-methyltetrah 20.6 3.6E+02 0.0078 22.8 6.1 49 54-105 149-218 (314)
197 TIGR02082 metH 5-methyltetrahy 20.6 3.5E+02 0.0075 26.8 6.8 57 53-115 732-792 (1178)
198 PF06258 Mito_fiss_Elm1: Mitoc 20.5 4.9E+02 0.011 21.4 10.6 55 55-112 150-214 (311)
199 PTZ00445 p36-lilke protein; Pr 20.3 3.9E+02 0.0085 21.4 6.0 59 65-124 76-147 (219)
200 PF10237 N6-adenineMlase: Prob 20.2 2.2E+02 0.0049 21.3 4.4 34 66-104 8-43 (162)
201 cd07491 Peptidases_S8_7 Peptid 20.2 4.3E+02 0.0093 20.6 7.1 52 66-119 88-147 (247)
202 cd08194 Fe-ADH6 Iron-containin 20.1 2.6E+02 0.0056 23.3 5.2 44 54-99 24-67 (375)
No 1
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=100.00 E-value=8.7e-37 Score=265.47 Aligned_cols=119 Identities=60% Similarity=0.899 Sum_probs=106.9
Q ss_pred eeeecccCCCCCCCcCCccccCCcccchHHHHHHHHHHHHHhccc-CCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcE
Q psy5981 6 VTVETKVFDGQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDK-LKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAK 84 (131)
Q Consensus 6 ~~~~~~~~~~~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~-~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V 84 (131)
+++||+||++++|||+||||+++++++++++.+++++++.++.+. .++++|+||||+|++|++|+++++++|+++|++|
T Consensus 1 ~~~~~~~~~~~~Fgt~giRG~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~VvVG~D~R~~S~~~a~~~a~~L~~~G~~V 80 (548)
T cd03085 1 QTVPTKPYEGQKPGTSGLRKKVKVFQQPNYLENFVQSIFNALPPEKLKGATLVVGGDGRYYNKEAIQIIIKIAAANGVGK 80 (548)
T ss_pred CccCCcCCCCCCCCcccccEeeccccCHHHHHHHHHHHHHHHHhccCCCCeEEEEECCCcChHHHHHHHHHHHHHCCCeE
Confidence 589999999999999999999999999999999999886665432 1223699999999999999999999999999999
Q ss_pred EEecCCccccchHHHHHHHHh-cCceEEEcCCCCC---CCCCCC
Q psy5981 85 LIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNP---SRTIRP 124 (131)
Q Consensus 85 ~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP---~~~ng~ 124 (131)
+++.++|++|||+++|+++++ +++|||||||||| ++|||=
T Consensus 81 ~~~~~~G~~pTP~l~fav~~~~a~gGImITASHNP~~~~eyNGi 124 (548)
T cd03085 81 VVVGQNGLLSTPAVSAVIRKRKATGGIILTASHNPGGPEGDFGI 124 (548)
T ss_pred EEeCCCCccCchHHHHHHHhcCCCeEEEEecCCCCCCCCcCCcE
Confidence 998655899999999999999 9999999999999 799983
No 2
>PLN02307 phosphoglucomutase
Probab=100.00 E-value=2.4e-36 Score=264.33 Aligned_cols=122 Identities=55% Similarity=0.857 Sum_probs=109.3
Q ss_pred ceeeeeeecccCCCCCCCcCCccccCCcccchHHHHHHHHHHHHHhccc-CCCCeEEEEecCCcCHHHHHHHHHHHHHHC
Q psy5981 2 SFKSVTVETKVFDGQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDK-LKGSVLVVGGDGRYFGDVAVDKIIKISAAN 80 (131)
Q Consensus 2 ~~~~~~~~~~~~~~~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~-~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~ 80 (131)
+++|.++|+.+++++.|||+||||+++++++++++.+++++++.++.+. .++++|+||||+|++|++|+++++++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~FGT~GiRG~~~~~l~~~~~~~ig~a~~~~~~~~~~~~~~VvVG~D~R~~S~~fa~~~a~~L~a~ 88 (579)
T PLN02307 9 SFKVSSVPTKPIEGQKPGTSGLRKKVKVFMQENYLANFVQALFNALPAEKVKGATLVLGGDGRYFNKEAIQIIIKIAAAN 88 (579)
T ss_pred ceeeEEecCCCccCCCCcCccccccccccCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcchHHHHHHHHHHHHHC
Confidence 4689999999999999999999999999999998999999776555322 233469999999999999999999999999
Q ss_pred CCcEEEecCCccccchHHHHHHHHh----cCceEEEcCCCCC---CCCCC
Q psy5981 81 GVAKLIVGQNGILSTPAVSALIRKH----ILGRLVKVPSSNP---SRTIR 123 (131)
Q Consensus 81 Gi~V~~~~~~g~~PTP~vsfav~~~----~~~GImITASHNP---~~~ng 123 (131)
|++|+++.++|++|||++||+++++ +++|||||||||| ++|||
T Consensus 89 Gi~V~~~~~~G~~PTP~vsfav~~~~~~~a~gGImITASHNP~~~~eyNG 138 (579)
T PLN02307 89 GVRRVWVGQNGLLSTPAVSAVIRERDGSKANGGFILTASHNPGGPEEDFG 138 (579)
T ss_pred CCEEEEeCCCCccCchHHHHHHHHhcccCCCeEEEEecCCCCCCCCCCCE
Confidence 9999999655899999999999987 7899999999999 89998
No 3
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=252.93 Aligned_cols=118 Identities=20% Similarity=0.274 Sum_probs=102.8
Q ss_pred eeeeecccCCCCCCCcCCccccCCcc---cchHHHHHHHHHHHHHhcccC----CCCeEEEEecCCcCHHHHHHHHHHHH
Q psy5981 5 SVTVETKVFDGQKPGTSGLRKPTKTF---QQEHYTENFIQSILTALGDKL----KGSVLVVGGDGRYFGDVAVDKIIKIS 77 (131)
Q Consensus 5 ~~~~~~~~~~~~~FGT~GiRg~~g~~---~~~~~~~~~~~ai~~~~~~~~----~~~~vvVG~D~R~~s~~~a~~~a~~L 77 (131)
.++++++||..+.|||+||||++|+. .+...+.++++++++++.+.. ..++|+||||+|++|++|+++++++|
T Consensus 34 ~~~l~~~f~~~i~FGT~GiRG~~g~~~~~~n~~~v~~~~~a~a~~l~~~~~~~~~~~~VvVg~D~R~~S~~fa~~~a~~L 113 (584)
T PTZ00150 34 EEELKRRFLKRMEFGTAGLRGKMGAGFNCMNDLTVQQTAQGLCAYVIETFGQALKSRGVVIGYDGRYHSRRFAEITASVF 113 (584)
T ss_pred HHHHHHHhCCCCcccCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCcHHHHHHHHHHH
Confidence 35788999999999999999999974 444556777888888875421 22469999999999999999999999
Q ss_pred HHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 78 AANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 78 ~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
+++|++|++++ +++|||+++|+++++ +++||||||||||++|||=
T Consensus 114 ~a~Gi~V~~~g--~~~pTP~lsfav~~~~a~gGImITASHNP~eyNGi 159 (584)
T PTZ00150 114 LSKGFKVYLFG--QTVPTPFVPYAVRKLKCLAGVMVTASHNPKEDNGY 159 (584)
T ss_pred HHCCCEEEEeC--CCCCcHHHHHHHHHhCCCeEEEEeccCCCCCCCCE
Confidence 99999999983 399999999999999 9999999999999999994
No 4
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=100.00 E-value=1.3e-33 Score=205.68 Aligned_cols=105 Identities=29% Similarity=0.322 Sum_probs=92.6
Q ss_pred CCCCcCCccccCC-cccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCcccc
Q psy5981 16 QKPGTSGLRKPTK-TFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILS 94 (131)
Q Consensus 16 ~~FGT~GiRg~~g-~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~P 94 (131)
..|||+||||+++ +.++++++.++++++++++.+.....+|+||||+|.+|++++++++++|.++|++|+++ |++|
T Consensus 2 ~~F~~~girG~~~~~~lt~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~---g~~~ 78 (137)
T PF02878_consen 2 VLFGTSGIRGIINVGELTPEFAARLAQAFASYLKEKGNGSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDI---GLVP 78 (137)
T ss_dssp CCBBTTSEEEECTHTTBSHHHHHHHHHHHHHHHHHTTTSSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEE---EEB-
T ss_pred CccCCCCeeEEeCCCCCCHHHHHHHHHHHHHhhcccCCCCeEEEEEcccCCHHHHHHHHHHHHhhcccccccc---cccC
Confidence 4799999999999 44788889999999999987644567899999999999999999999999999999998 7999
Q ss_pred chHHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 95 TPAVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 95 TP~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
||+++|+++++ +++||||||||||++|||
T Consensus 79 tP~~~~~~~~~~~~ggi~iTaShnp~~~ng 108 (137)
T PF02878_consen 79 TPALSFAIRQLNADGGIMITASHNPPGYNG 108 (137)
T ss_dssp HHHHHHHHHHHTESEEEEE--TTS-TTEEE
T ss_pred cHHhhhhccccccceeeEEEecCCCCCcce
Confidence 99999999999 999999999999999998
No 5
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-33 Score=236.97 Aligned_cols=107 Identities=20% Similarity=0.211 Sum_probs=98.1
Q ss_pred CCCCCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccc
Q psy5981 14 DGQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGIL 93 (131)
Q Consensus 14 ~~~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~ 93 (131)
..+.|||+||||+++..++++++.++++++++++.+ ....+|+||||+|.+|++|+.+++++|+++|++|+++ |++
T Consensus 6 ~~~~FGT~GiRG~~~~~lt~~~~~~~g~a~~~~l~~-~~~~~VvVG~D~R~ss~~~~~a~~~gl~~~G~~v~~~---g~~ 81 (464)
T COG1109 6 KKLLFGTDGIRGVAGEELTPEFALKLGRALGSVLRK-KGAPKVVVGRDTRLSSEMLAAALAAGLTSAGIDVYDL---GLV 81 (464)
T ss_pred ccceECCCccccccCCCcCHHHHHHHHHHHHHHHhh-cCCCeEEEEecCCCCHHHHHHHHHHHHHHCCCeEEEe---CCC
Confidence 347899999999999878888899999999998875 2226799999999999999999999999999999998 799
Q ss_pred cchHHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 94 STPAVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 94 PTP~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
|||+++|+++++ +++||||||||||++|||=
T Consensus 82 pTP~~~f~~~~~~~~~gvmITASHNP~~yNGi 113 (464)
T COG1109 82 PTPAVAFATRKLGADAGVMITASHNPPEYNGI 113 (464)
T ss_pred CCHHHHHHHHhcCCCeEEEEecCCCCchhCcE
Confidence 999999999999 8899999999999999994
No 6
>PRK07564 phosphoglucomutase; Validated
Probab=100.00 E-value=9.6e-33 Score=239.47 Aligned_cols=122 Identities=32% Similarity=0.375 Sum_probs=106.2
Q ss_pred eeeeeeecccCCCCCCCcCCccccCCc-ccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCC
Q psy5981 3 FKSVTVETKVFDGQKPGTSGLRKPTKT-FQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANG 81 (131)
Q Consensus 3 ~~~~~~~~~~~~~~~FGT~GiRg~~g~-~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~G 81 (131)
|+++..++.+|+.+.|||+||||+++. ..+++.+.++++++++++.+...+++|+||||+|.+|++|+++++++|+++|
T Consensus 25 ~~~~~~~~~~~~~~~FGT~GiRg~~~~~~lt~~~v~~i~~a~a~~~~~~~~~~~VvVG~D~R~~S~~~a~a~a~gL~s~G 104 (543)
T PRK07564 25 YTLKPDPTNPFQDVKFGTSGHRGSSLQPSFNENHILAIFQAICEYRGKQGITGPLFVGGDTHALSEPAIQSALEVLAANG 104 (543)
T ss_pred hcccCCCCCCcCCCCCcccccccccCCCCcCHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCcCCHHHHHHHHHHHHHCC
Confidence 356778999999999999999999974 3677778889999888875321123599999999999999999999999999
Q ss_pred CcEEEecCCccccchHHHHHHHHh------cCceEEEcCCCCCCCCCCC
Q psy5981 82 VAKLIVGQNGILSTPAVSALIRKH------ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 82 i~V~~~~~~g~~PTP~vsfav~~~------~~~GImITASHNP~~~ng~ 124 (131)
++|+++.+.|++|||+++|+++++ +++||||||||||++|||=
T Consensus 105 i~V~~~~~~g~~pTP~~~~av~~~~~~~~~~~gGImITASHNP~e~NGi 153 (543)
T PRK07564 105 VGVVIVGRGGYTPTPAVSHAILKYNGRGGGLADGIVITPSHNPPEDGGI 153 (543)
T ss_pred CEEEEeCCCCcCCchHHHHHHHHhCCCccccceeEEEecCCCCcccCeE
Confidence 999988656899999999999876 5899999999999999993
No 7
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=99.98 E-value=2.4e-32 Score=231.85 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=96.7
Q ss_pred CCCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccc
Q psy5981 16 QKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILST 95 (131)
Q Consensus 16 ~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PT 95 (131)
+.|||+||||++++.++++++.++++++++++.+....++|+||||+|.+|++|+++++++|+++|++|+++ |.+||
T Consensus 2 ~~Fgt~GiRG~~~~~lt~~~~~~lg~a~g~~l~~~~~~~~V~Vg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g~~pT 78 (446)
T PRK14324 2 KLFGTDGVRGKAGEKLTAFLAMRLAMAAGIYFKKHSITNKILVGKDTRRSGYMIENALVSGLTSVGYNVIQI---GPMPT 78 (446)
T ss_pred cccCCCCcceecCCCcCHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCcCHHHHHHHHHHHHHHCCCeEEEe---cCccH
Confidence 579999999999988889999999999998886432224699999999999999999999999999999988 79999
Q ss_pred hHHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 96 PAVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 96 P~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
|+++|+++++ +++||||||||||++|||=
T Consensus 79 P~~~~a~~~~~~~gGI~ITaSHNP~~~nGi 108 (446)
T PRK14324 79 PAIAFLTEDMRCDAGIMISASHNPYYDNGI 108 (446)
T ss_pred HHHHHHHhhcCCceEEEEEcCCCChhHCCE
Confidence 9999999999 9999999999999999983
No 8
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=9.9e-32 Score=228.89 Aligned_cols=111 Identities=22% Similarity=0.196 Sum_probs=100.3
Q ss_pred ccCCCCCCCcCCccccCCcccchHHHHHHHHHHHHHhccc-CCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecC
Q psy5981 11 KVFDGQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDK-LKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQ 89 (131)
Q Consensus 11 ~~~~~~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~-~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~ 89 (131)
-.+....|||+||||++++.++++++.+++++++.++.++ .++++|+||||+|.+|++|+++++++|+++|++|+++
T Consensus 12 ~~~~~~~Fgt~GIRG~~~~~ltpe~a~~lg~a~g~~l~~~~~~~~~VvVG~D~R~ss~~l~~a~~~gL~s~Gv~V~~~-- 89 (465)
T PRK14317 12 GLPASPLFGTDGIRGKVGELLTAPLALQVGFWAGQVLRQTAPGEGPVLIGQDSRNSSDMLAMALAAGLTAAGREVWHL-- 89 (465)
T ss_pred CCCcCCeecCCCeeeEeCcccCHHHHHHHHHHHHHHHHhccCCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCeEEEe--
Confidence 4567789999999999998888898999999988887532 2345699999999999999999999999999999998
Q ss_pred CccccchHHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 90 NGILSTPAVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 90 ~g~~PTP~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
|.+|||+++|+++++ +++||||||||||++|||=
T Consensus 90 -g~~pTP~~~~av~~~~~~gGI~ITaSHnP~~~nGi 124 (465)
T PRK14317 90 -GLCPTPAVAYLTRKSEAIGGLMISASHNPPEDNGI 124 (465)
T ss_pred -cccCcHHHHHHHHhcCCCEEEEEeCCCCCcccCCE
Confidence 799999999999999 9999999999999999994
No 9
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=1.1e-31 Score=226.86 Aligned_cols=108 Identities=23% Similarity=0.236 Sum_probs=97.1
Q ss_pred CCCCCCcCCccccCCc-ccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCcc
Q psy5981 14 DGQKPGTSGLRKPTKT-FQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGI 92 (131)
Q Consensus 14 ~~~~FGT~GiRg~~g~-~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~ 92 (131)
+...|||+||||++++ .++++++.+++++++.++.+....++|+||||+|.+|++|+++++++|+++|++|+++ |.
T Consensus 2 ~~~~Fgt~giRG~~~~~~lt~e~~~~lg~a~g~~l~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g~ 78 (440)
T PRK14323 2 ERRYFGTDGVRGVAGEPPLTPEFVLKLGQAAGEVFKRHGPRPVVLLGKDTRQSGDMLEAALAAGLTSRGVRVEHL---GV 78 (440)
T ss_pred CccEeCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHHHHHHCCCEEEEe---cc
Confidence 3567999999999996 4788889999999998886432235699999999999999999999999999999998 89
Q ss_pred ccchHHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 93 LSTPAVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 93 ~PTP~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
+|||+++|+++++ +++||||||||||++|||=
T Consensus 79 ~pTP~~~~av~~~~~~gGI~ITaSHnP~~~nGi 111 (440)
T PRK14323 79 LPTPGVSYLTRHLGATAGVVISASHNPYQDNGI 111 (440)
T ss_pred cChHHHHHHHHHhCCCEEEEEecCCCCCccCCE
Confidence 9999999999999 9999999999999999983
No 10
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=99.97 E-value=1.1e-31 Score=226.97 Aligned_cols=103 Identities=19% Similarity=0.144 Sum_probs=95.4
Q ss_pred CCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccch
Q psy5981 17 KPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTP 96 (131)
Q Consensus 17 ~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP 96 (131)
.|||+||||++++..+++++.+++++++.++.+. .+++|+||||+|.+|++|+++++++|+++|++|+++ |++|||
T Consensus 1 ~Fg~~giRG~~~~~lt~~~v~~l~~a~~~~l~~~-~~~~VvVg~D~R~~s~~~~~a~~~gL~s~G~~V~~~---g~~pTP 76 (443)
T cd03089 1 IFRAYDIRGIAGEELTEEIAYAIGRAFGSWLLEK-GAKKVVVGRDGRLSSPELAAALIEGLLAAGCDVIDI---GLVPTP 76 (443)
T ss_pred CCcccccceeeCCccCHHHHHHHHHHHHHHHHhc-CCCeEEEEECCCCCHHHHHHHHHHHHHHcCCcEEEe---CCcchH
Confidence 4999999999998888888999999999888642 234699999999999999999999999999999998 799999
Q ss_pred HHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 97 AVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 97 ~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
+++|+++++ +++||||||||||++|||
T Consensus 77 ~~~~~v~~~~a~gGI~ITASHNP~~~nG 104 (443)
T cd03089 77 VLYFATFHLDADGGVMITASHNPPEYNG 104 (443)
T ss_pred HHHHHHhccCCCeEEEEecCCCCcccCc
Confidence 999999999 999999999999999999
No 11
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.97 E-value=1.2e-31 Score=226.05 Aligned_cols=105 Identities=24% Similarity=0.249 Sum_probs=96.5
Q ss_pred CCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccch
Q psy5981 17 KPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTP 96 (131)
Q Consensus 17 ~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP 96 (131)
.|||+||||++++.++++++.+++++++.++.+..+..+|+||||+|.+|++|+++++++|+++|++|+++ |++|||
T Consensus 1 ~Fg~~giRG~~~~~lt~e~~~~lg~a~~~~l~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g~~pTP 77 (434)
T cd05802 1 LFGTDGIRGVANEPLTPELALKLGRAAGKVLGKGGGRPKVLIGKDTRISGYMLESALAAGLTSAGVDVLLL---GVIPTP 77 (434)
T ss_pred CCCCCccceECCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHHCCCcEEEE---cccchH
Confidence 49999999999998899999999999999886422235699999999999999999999999999999998 899999
Q ss_pred HHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 97 AVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 97 ~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
+++|+++++ +++||||||||||++|||=
T Consensus 78 ~~~~av~~~~~~gGI~ITaSHnp~~~nGi 106 (434)
T cd05802 78 AVAYLTRKLRADAGVVISASHNPFEDNGI 106 (434)
T ss_pred HHHHHHHHhCCCeEEEEEecCCchhhCCE
Confidence 999999999 9999999999999999983
No 12
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=1.5e-31 Score=226.30 Aligned_cols=106 Identities=22% Similarity=0.235 Sum_probs=96.3
Q ss_pred CCCCCcCCccccCCcccchHHHHHHHHHHHHHhccc-CCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccc
Q psy5981 15 GQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDK-LKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGIL 93 (131)
Q Consensus 15 ~~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~-~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~ 93 (131)
++.|||+||||+++...+++++.+++++++.++.++ ....+|+||||+|.+|++|+++++++|+++|++|+++ |++
T Consensus 1 ~~~Fg~~giRG~~~~~ltpe~~~~ig~a~~~~l~~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g~~ 77 (448)
T PRK14316 1 GKYFGTDGVRGVANKELTPELAFKLGRAGGYVLTKHETERPKVLVGRDTRISGDMLESALIAGLLSVGAEVMRL---GVI 77 (448)
T ss_pred CceeccCCcceEcCCCCCHHHHHHHHHHHHHHHHhccCCCCeEEEEECCCcCHHHHHHHHHHHHHHCCCEEEEe---ccc
Confidence 467999999999998888888999999988877532 1234699999999999999999999999999999998 899
Q ss_pred cchHHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 94 STPAVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 94 PTP~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
|||+++|+++++ +++||||||||||++|||
T Consensus 78 pTP~~~~av~~~~~~gGi~ITaSHnp~~~nG 108 (448)
T PRK14316 78 PTPGVAYLTRALGADAGVMISASHNPVEDNG 108 (448)
T ss_pred chHHHHHHHHHhcCcEEEEEEecCCChhhCc
Confidence 999999999999 999999999999999999
No 13
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=99.97 E-value=1.3e-31 Score=227.76 Aligned_cols=102 Identities=18% Similarity=0.075 Sum_probs=94.6
Q ss_pred CCCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccc
Q psy5981 16 QKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILST 95 (131)
Q Consensus 16 ~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PT 95 (131)
+.|||+||||++++..+++++.+++++++.++. +++|+||||+|.+|++|+++++++|+++|++|+++ |.+||
T Consensus 5 ~~Fg~~GiRG~~~~~lt~~~~~~~~~a~a~~l~----~~~VvVg~D~R~ss~~l~~a~a~gL~s~Gi~V~~~---g~~pT 77 (456)
T PRK15414 5 TCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLK----PKTIVLGGDVRLTSETLKLALAKGLQDAGVDVLDI---GMSGT 77 (456)
T ss_pred ceecccCcceeeCCCcCHHHHHHHHHHHHHHhc----CCeEEEEECCCCChHHHHHHHHHHHHHCCCeEEEe---CCcCh
Confidence 579999999999988888888999998888774 23799999999999999999999999999999998 79999
Q ss_pred hHHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 96 PAVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 96 P~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
|+++|+++++ +++||||||||||++|||=
T Consensus 78 P~~~~av~~~~~~gGI~ITaSHNP~~~NG~ 107 (456)
T PRK15414 78 EEIYFATFHLGVDGGIEVTASHNPMDYNGM 107 (456)
T ss_pred HHHHHhhhccCCCeEEEEecCCCCCCCCCE
Confidence 9999999999 9999999999999999993
No 14
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=99.97 E-value=2.2e-31 Score=230.96 Aligned_cols=111 Identities=29% Similarity=0.300 Sum_probs=95.2
Q ss_pred CCCCCCcCCccccCCcc-cchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCcc
Q psy5981 14 DGQKPGTSGLRKPTKTF-QQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGI 92 (131)
Q Consensus 14 ~~~~FGT~GiRg~~g~~-~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~ 92 (131)
+.+.|||+||||+++.. ++++++.++++++++++.++....+|+||||+|.+|++|+++++++|+++|++|+++++.|+
T Consensus 37 ~~~~FGT~GiRG~~~~~~lt~~~~~~i~~a~a~~~~~~~~~~~VvVG~D~R~sS~~~~~a~a~gL~s~Gi~V~~~~~~G~ 116 (543)
T TIGR01132 37 HAVKFGTSGHRGSALRGTFNEPHILAIAQAIAEYRAAQGITGPLYIGKDTHALSEPAFISVLEVLAANGVEVIVQENNGF 116 (543)
T ss_pred CccCCcCccccCCcccCccCHHHHHHHHHHHHHHHHHhCCCCcEEEEeCCCcCCHHHHHHHHHHHHHCCCEEEEeCCCCc
Confidence 46899999999999853 66777888999888877533212349999999999999999999999999999999755589
Q ss_pred ccchHHHHHHHHh------cCceEEEcCCCCCCCCCCC
Q psy5981 93 LSTPAVSALIRKH------ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 93 ~PTP~vsfav~~~------~~~GImITASHNP~~~ng~ 124 (131)
+|||+++|+++++ +++||||||||||++|||=
T Consensus 117 ~pTP~~~~av~~~~~~~~~~~gGI~ITASHNP~e~NGi 154 (543)
T TIGR01132 117 TPTPAVSHAILTHNKKGEPLADGIVITPSHNPPEDGGI 154 (543)
T ss_pred CCchHHHHHHHHhcccccccceEEEEeCCCCCCccCeE
Confidence 9999999999876 3689999999999999983
No 15
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.97 E-value=2.1e-31 Score=230.03 Aligned_cols=117 Identities=24% Similarity=0.183 Sum_probs=98.8
Q ss_pred eecccCCCCCCCcCCccccCCc-ccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEE
Q psy5981 8 VETKVFDGQKPGTSGLRKPTKT-FQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLI 86 (131)
Q Consensus 8 ~~~~~~~~~~FGT~GiRg~~g~-~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~ 86 (131)
.|-.+.+.+.|||+||||+++. .++++.+.++++++++++.+....++|+||||+|.+|.++++.++++|+++|++|++
T Consensus 13 ~~~~~~~~~~FGT~GiRG~~g~~~lt~~~v~~i~~a~~~~l~~~~~~~~VvVg~D~R~~S~~~~~~~~~gL~s~Gi~V~~ 92 (522)
T cd05801 13 DPSNPAQRVAFGTSGHRGSSLKGSFNEAHILAISQAICDYRKSQGITGPLFLGKDTHALSEPAFISALEVLAANGVEVII 92 (522)
T ss_pred CCCCCcceeeEEcccccCccCCCchhHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 4555566789999999999985 367777888999999887533222359999999999999999999999999999998
Q ss_pred ecCCccccchHHHHHHHHh-cCc------eEEEcCCCCCCCCCCC
Q psy5981 87 VGQNGILSTPAVSALIRKH-ILG------RLVKVPSSNPSRTIRP 124 (131)
Q Consensus 87 ~~~~g~~PTP~vsfav~~~-~~~------GImITASHNP~~~ng~ 124 (131)
+.+.|++|||+++|+++++ +++ ||||||||||++|||=
T Consensus 93 ~~~~g~~pTP~~~~av~~~~~~~~~~~~gGI~ITASHNP~~~NGi 137 (522)
T cd05801 93 QQNDGYTPTPVISHAILTYNRGRTEGLADGIVITPSHNPPEDGGF 137 (522)
T ss_pred eCCCCCCCchHHHHHHHHhccccccCCCcEEEEECCCCCcccCEE
Confidence 7555899999999999998 764 9999999999999983
No 16
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.97 E-value=3.3e-31 Score=224.25 Aligned_cols=104 Identities=26% Similarity=0.333 Sum_probs=96.3
Q ss_pred CCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccch
Q psy5981 17 KPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTP 96 (131)
Q Consensus 17 ~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP 96 (131)
+|||+||||++++..+++++.++++++++++.+.....+|+||||+|.+|++|+++++++|+++|++|+++ |.+|||
T Consensus 1 ~f~~~GiRG~~~~~lt~~~v~~l~~a~~~~l~~~~~~~~Vvvg~D~R~~s~~l~~a~~~gL~~~G~~V~~~---g~~pTP 77 (445)
T cd05803 1 IISISGIRGIVGEGLTPEVITRYVAAFATWQPERTKGGKIVVGRDGRPSGPMLEKIVIGALLACGCDVIDL---GIAPTP 77 (445)
T ss_pred CCCcCceeeecCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEe---CCCCch
Confidence 59999999999988889999999999999886432245699999999999999999999999999999998 799999
Q ss_pred HHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 97 AVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 97 ~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
+++|+++++ +++||||||||||++|||
T Consensus 78 ~~~~a~~~~~~~~GI~ITaShnp~~~nG 105 (445)
T cd05803 78 TVQVLVRQSQASGGIIITASHNPPQWNG 105 (445)
T ss_pred HHHHHHHHhCCCeeEEEEecCCCccccc
Confidence 999999999 999999999999999998
No 17
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=3.7e-31 Score=224.31 Aligned_cols=108 Identities=22% Similarity=0.218 Sum_probs=97.8
Q ss_pred CCCCCCcCCccccCCcc-cchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCcc
Q psy5981 14 DGQKPGTSGLRKPTKTF-QQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGI 92 (131)
Q Consensus 14 ~~~~FGT~GiRg~~g~~-~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~ 92 (131)
+...|||+||||+++.. .+++++.+++++++.++.+....++|+||||+|.+|++|+++++++|+++|++|+++ |.
T Consensus 2 ~~~~Fg~~giRG~~~~~~lt~e~~~~lg~a~g~~l~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g~ 78 (448)
T PRK14315 2 TRKYFGTDGIRGRANTFPMTAELALRVGQAAGLYFRRGDHRHRVVIGKDTRLSGYMIENALVAGFTSVGMDVLLL---GP 78 (448)
T ss_pred CCcEECCCCceecCCCCCCCHHHHHHHHHHHHHhHhhcCCCceEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEe---CC
Confidence 35679999999999987 889999999999998876432223799999999999999999999999999999998 79
Q ss_pred ccchHHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 93 LSTPAVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 93 ~PTP~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
+|||+++|+++++ +++||||||||||++|||=
T Consensus 79 ~pTP~~~~a~~~~~~~gGi~ITaSHnP~~~nGi 111 (448)
T PRK14315 79 IPTPAVAMLTRSMRADLGVMISASHNPFEDNGI 111 (448)
T ss_pred cccHHHHHHHHhcCCCEEEEEEcCCCCcccCCE
Confidence 9999999999999 9999999999999999983
No 18
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=99.97 E-value=2.1e-31 Score=225.04 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=92.2
Q ss_pred CCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccch
Q psy5981 17 KPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTP 96 (131)
Q Consensus 17 ~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP 96 (131)
.|||+||||++++.++++++.+++++++.++.+ +.+|+||||+|.+|++|+++++++|+++|++|+++ |.+|||
T Consensus 1 ~Fgt~giRG~~~~~lt~~~~~~lg~a~~~~l~~---~~~VvVG~D~R~ss~~~~~a~~~gL~s~G~~V~~~---g~~pTP 74 (441)
T cd05805 1 LFGGRGVSGLINVDITPEFATRLGAAYGSTLPP---GSTVTVSRDASRASRMLKRALISGLLSTGVNVRDL---GALPLP 74 (441)
T ss_pred CCCCCCceEEeCCCCCHHHHHHHHHHHhhcCCC---CCEEEEEcCCChhHHHHHHHHHHHHHhCCCeEEec---CCcCch
Confidence 499999999999878888888888887776532 34699999999999999999999999999999988 789999
Q ss_pred HHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 97 AVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 97 ~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
+++|+++++ +++||||||||||++|||
T Consensus 75 ~~~~av~~~~~~gGi~ITaSHnp~~~nG 102 (441)
T cd05805 75 VARYAIRFLGASGGIHVRTSPDDPDKVE 102 (441)
T ss_pred HHHHHHHhcCCCeeEEEEeCCCCccceE
Confidence 999999999 999999999999999998
No 19
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=3.9e-31 Score=223.93 Aligned_cols=105 Identities=22% Similarity=0.262 Sum_probs=94.2
Q ss_pred CCCCcCCccccCCc-ccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCcccc
Q psy5981 16 QKPGTSGLRKPTKT-FQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILS 94 (131)
Q Consensus 16 ~~FGT~GiRg~~g~-~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~P 94 (131)
+.|||+||||+++. .++++++.+++++++.++.+....+.|+||||+|.+|++++++++++|+++|++|+++ |.+|
T Consensus 3 ~~Fgt~giRG~~~~~~ltpe~~~~lg~a~g~~l~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~d~---g~~p 79 (443)
T PRK14320 3 KYFGTDGIRGEVANSTITVEFTQKLGNAVGSLINQKNYPKFVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDL---GVVP 79 (443)
T ss_pred cccCCCCeeeEcCCCCCCHHHHHHHHHHHHHhHhhCCCCCeEEEEECCCcCHHHHHHHHHHHHHHCCCEEEEe---cccC
Confidence 67999999999974 4778888999998888775321224599999999999999999999999999999988 8999
Q ss_pred chHHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 95 TPAVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 95 TP~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
||+++|+++++ +++||||||||||++|||
T Consensus 80 TP~~~~av~~~~~~gGI~ITaSHNp~~~nG 109 (443)
T PRK14320 80 TPVVAFMTVKHRAAAGFVITASHNKFTDNG 109 (443)
T ss_pred chHHHHHHHHcCCceEEEEEeCCCchHHCe
Confidence 99999999999 999999999999999998
No 20
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=7.5e-31 Score=222.46 Aligned_cols=105 Identities=27% Similarity=0.231 Sum_probs=96.1
Q ss_pred CCCCcCCccccCCcccchHHHHHHHHHHHHHhcccC----CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCc
Q psy5981 16 QKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKL----KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNG 91 (131)
Q Consensus 16 ~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~----~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g 91 (131)
..|||+||||++++.++++++.+++++++.++.+.. ....|+||||+|.+|++++++++++|+++|++|+++ |
T Consensus 3 ~~Fg~~giRG~~~~~ltpe~~~~lg~a~~~~l~~~~~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g 79 (448)
T PRK14318 3 RLFGTDGVRGLANRDLTAELALALGAAAARVLGHAGRPGGRRPVAVVGRDPRASGEFLEAAVSAGLASAGVDVLRV---G 79 (448)
T ss_pred cccCCCCcceecCCccCHHHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCcCHHHHHHHHHHHHHHCCCEEEEe---c
Confidence 679999999999988889999999999998875321 134599999999999999999999999999999988 8
Q ss_pred cccchHHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 92 ILSTPAVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 92 ~~PTP~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
++|||+++|+++++ +++||||||||||++|||
T Consensus 80 ~~pTP~~~~av~~~~~~gGI~ITaSHnp~~~nG 112 (448)
T PRK14318 80 VLPTPAVAYLTAALDADFGVMISASHNPMPDNG 112 (448)
T ss_pred ccCchHHHHHHHhcCCCEEEEEEcCCCCcccCC
Confidence 99999999999999 999999999999999999
No 21
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=5.4e-31 Score=223.55 Aligned_cols=102 Identities=24% Similarity=0.243 Sum_probs=94.7
Q ss_pred CCCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccc
Q psy5981 16 QKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILST 95 (131)
Q Consensus 16 ~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PT 95 (131)
+.|||+||||++++..+++++.+++++++.++. .++|+||||+|.+|++|+++++++|+++|++|+++ |++||
T Consensus 3 ~~Fgt~GiRG~~~~~lt~e~~~~lg~a~~~~l~----~~~VvVg~D~R~~s~~l~~a~~~gL~s~G~~V~~~---g~~pT 75 (449)
T PRK14321 3 KYFGTSGIREVVNEKLTPELALKVGLALGTYLG----GGKVVVGKDTRTSSEMLKNALISGLLSTGVDVIDI---GLAPT 75 (449)
T ss_pred cccccCCeeEEcCCCCCHHHHHHHHHHHHhhcc----CCcEEEEeCCCCChHHHHHHHHHHHHHCCCeEEEe---CCcCC
Confidence 679999999999988888888899998888764 23699999999999999999999999999999988 89999
Q ss_pred hHHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 96 PAVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 96 P~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
|+++|+++++ +++||||||||||++|||=
T Consensus 76 P~~~~av~~~~~~gGI~ITaSHnP~~~nGi 105 (449)
T PRK14321 76 PLTGFAIKLYNADAGVTITASHNPPEYNGI 105 (449)
T ss_pred cHHHHHHHhcCCCeEEEEEeCCCCHHHCcE
Confidence 9999999999 9999999999999999994
No 22
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=99.97 E-value=1.1e-30 Score=220.95 Aligned_cols=104 Identities=23% Similarity=0.209 Sum_probs=94.5
Q ss_pred CCcCCccccCC-cccchHHHHHHHHHHHHHhcccC-CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccc
Q psy5981 18 PGTSGLRKPTK-TFQQEHYTENFIQSILTALGDKL-KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILST 95 (131)
Q Consensus 18 FGT~GiRg~~g-~~~~~~~~~~~~~ai~~~~~~~~-~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PT 95 (131)
|||+||||+++ ...+++++.+++++++.++.+.. ..++|+||||+|.+|++|+++++++|+++|++|+++ |.+||
T Consensus 1 Fgt~giRG~~~~~~ltp~~~~~l~~a~~~~l~~~~~~~~~V~Vg~D~R~~s~~l~~a~~~gL~s~G~~V~~~---g~~pT 77 (443)
T TIGR01455 1 FGTDGVRGRAGQEPLTAELALLLGAAAGRVLRQGRDTAPRVVIGKDTRLSGYMLENALAAGLNSAGVDVLLL---GPLPT 77 (443)
T ss_pred CCCCccceecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcChHHHHHHHHHHHHHCCCeEEEe---CCcCc
Confidence 89999999999 56888889999999998886432 223599999999999999999999999999999998 79999
Q ss_pred hHHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 96 PAVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 96 P~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
|+++|+++++ +++||||||||||++|||=
T Consensus 78 P~~~~av~~~~~~gGI~iTaSHnP~~~nGi 107 (443)
T TIGR01455 78 PAVAYLTRTLRADAGVMISASHNPYEDNGI 107 (443)
T ss_pred HHHHHHHHhcCCCeEEEEecCCCCcccCcE
Confidence 9999999999 9999999999999999983
No 23
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=99.97 E-value=1e-30 Score=221.75 Aligned_cols=107 Identities=26% Similarity=0.283 Sum_probs=96.6
Q ss_pred CCCCcCCccccCCcccchHHHHHHHHHHHHHhccc-CCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCcccc
Q psy5981 16 QKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDK-LKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILS 94 (131)
Q Consensus 16 ~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~-~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~P 94 (131)
++|||+||||++++.++++++.+++++++.++.+. .++.+|+||||+|.+|++++++++++|+++|++|+++ .|.+|
T Consensus 1 ~~Fgt~GiRG~~~~~lt~~~~~~lg~a~~~~l~~~~~~~~~Vvvg~D~R~ss~~l~~a~~~gL~s~G~~V~~~--~g~~p 78 (461)
T cd05800 1 IKFGTDGWRGIIAEDFTFENVRRVAQAIADYLKEEGGGGRGVVVGYDTRFLSEEFARAVAEVLAANGIDVYLS--DRPVP 78 (461)
T ss_pred CCccCccccccccCCccHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCcCcHHHHHHHHHHHHHCCCEEEEc--CCCCC
Confidence 47999999999998788888999999999888632 1235699999999999999999999999999999987 36999
Q ss_pred chHHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 95 TPAVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 95 TP~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
||+++|+++++ +++||||||||||++|||=
T Consensus 79 TP~~~~a~~~~~~~gGI~ITaSHnp~~~ngi 109 (461)
T cd05800 79 TPAVSWAVKKLGAAGGVMITASHNPPEYNGV 109 (461)
T ss_pred chHHHHHHHHhCCCeeEEEccCCCCcccCeE
Confidence 99999999999 9999999999999999984
No 24
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=1.2e-30 Score=221.29 Aligned_cols=106 Identities=22% Similarity=0.266 Sum_probs=96.7
Q ss_pred CCCCCcCCccccCCcc-cchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccc
Q psy5981 15 GQKPGTSGLRKPTKTF-QQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGIL 93 (131)
Q Consensus 15 ~~~FGT~GiRg~~g~~-~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~ 93 (131)
...|||+||||+++.. .+++++.+++++++.++.+....++|+||||+|.+|++|+++++++|+++|++|+++ |.+
T Consensus 3 ~~~Fgt~GiRG~~~~~~lt~e~~~~l~~a~~~~l~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~s~Gv~V~~~---g~~ 79 (450)
T PRK14314 3 KKLFGTDGVRGRANVYPMTAEMALQLGRAAAYVFRNGSGRHRVVIGKDTRLSGYMFENALIAGLCSMGVDVLLV---GPL 79 (450)
T ss_pred CceeCCCCcceecCCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCcChHHHHHHHHHHHHHCCCeEEEe---ccc
Confidence 3679999999999965 888999999999999886432234699999999999999999999999999999998 799
Q ss_pred cchHHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 94 STPAVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 94 PTP~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
|||+++|+++++ +++||||||||||++|||
T Consensus 80 ptP~~~~a~~~~~~~gGI~iTaShnp~~~ng 110 (450)
T PRK14314 80 PTPGIAFITRSMRADAGVVISASHNPYQDNG 110 (450)
T ss_pred CCHHHHHHHHhcCCCEEEEEEeCCCCccccc
Confidence 999999999999 999999999999999998
No 25
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=99.97 E-value=1.5e-30 Score=222.13 Aligned_cols=106 Identities=23% Similarity=0.206 Sum_probs=95.3
Q ss_pred CCCCcCCccccCCcc---cchHHHHHHHHHHHHHhcccC---CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecC
Q psy5981 16 QKPGTSGLRKPTKTF---QQEHYTENFIQSILTALGDKL---KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQ 89 (131)
Q Consensus 16 ~~FGT~GiRg~~g~~---~~~~~~~~~~~ai~~~~~~~~---~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~ 89 (131)
++|||+||||++++. .+++.+.+++++++.++.+.. ++++|+||||+|.+|++++++++++|+++|++|+++
T Consensus 2 ~~Fgt~giRg~~~~~~~~l~~~~~~~l~~a~~~~l~~~~~~~~~~~V~Vg~D~R~~s~~~~~a~~~gL~s~Gi~V~~~-- 79 (487)
T cd05799 2 LEFGTAGLRGKMGAGTNRMNDYTVRQATQGLANYLKKKGPDAKNRGVVIGYDSRHNSREFAELTAAVLAANGIKVYLF-- 79 (487)
T ss_pred CcccCcccccccCCCCccccHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCCCChHHHHHHHHHHHHHCCCEEEEe--
Confidence 589999999999974 677778889999998876322 335699999999999999999999999999999998
Q ss_pred Cc-cccchHHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 90 NG-ILSTPAVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 90 ~g-~~PTP~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
| .+|||+++|+++++ +++||||||||||++|||=
T Consensus 80 -g~~~ptP~~~~~i~~~~~~gGI~iTaSHnp~~~nGi 115 (487)
T cd05799 80 -DDLRPTPLLSFAVRHLGADAGIMITASHNPKEYNGY 115 (487)
T ss_pred -CCCCCCcHHHHHHHHhCCCeeEEEEeeCCCcccCCE
Confidence 5 99999999999999 9999999999999999994
No 26
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=99.97 E-value=3.2e-30 Score=218.31 Aligned_cols=105 Identities=24% Similarity=0.223 Sum_probs=95.8
Q ss_pred CCCCcCCccccCCc-ccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCcccc
Q psy5981 16 QKPGTSGLRKPTKT-FQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILS 94 (131)
Q Consensus 16 ~~FGT~GiRg~~g~-~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~P 94 (131)
..|||+||||+++. ..+++++.+++++++.++.+. +..+|+||||+|.+|++|+++++++|+++|++|+++ |.+|
T Consensus 2 ~~Fgt~GiRG~~~~~~ltpe~~~~lg~a~a~~l~~~-~~~~VvVg~D~R~ss~~l~~a~~~gL~s~Gv~V~~~---g~~p 77 (443)
T PRK10887 2 KYFGTDGIRGKVGQAPITPDFVLKLGWAAGKVLARQ-GRPKVLIGKDTRISGYMLESALEAGLAAAGVDVLLT---GPMP 77 (443)
T ss_pred CccCCCccceecCCCCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEE---CCcC
Confidence 46999999999997 488888999999999888642 234699999999999999999999999999999998 7999
Q ss_pred chHHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 95 TPAVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 95 TP~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
||+++|+++++ +++||||||||||++|||=
T Consensus 78 TP~~~~a~~~~~~~gGI~ITaShnp~~~ngi 108 (443)
T PRK10887 78 TPAVAYLTRTLRAEAGIVISASHNPYYDNGI 108 (443)
T ss_pred hHHHHHHHHHcCCCEEEEEecCCCCcccCeE
Confidence 99999999999 9999999999999999984
No 27
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=99.97 E-value=4.1e-30 Score=218.65 Aligned_cols=104 Identities=22% Similarity=0.215 Sum_probs=92.2
Q ss_pred CCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccch
Q psy5981 17 KPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTP 96 (131)
Q Consensus 17 ~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP 96 (131)
+|||+||||++.+ .+++++.++++++++++.+..+++.|+||||+|.+|++|+++++++|+++|++|+++ |.+|||
T Consensus 1 ~Fgt~GiRG~~~~-ltpe~~~~l~~a~~~~l~~~~~~~~VvVG~D~R~~s~~l~~a~~~gL~~~Gv~V~~~---g~~pTP 76 (459)
T cd03088 1 KFGTSGLRGLVTD-LTDEVCYAYTRAFLQHLESKFPGDTVAVGRDLRPSSPRIAAACAAALRDAGFRVVDC---GAVPTP 76 (459)
T ss_pred CCCCcccceeecc-CCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcchHHHHHHHHHHHHHCCCEEEEe---CCCCCH
Confidence 6999999999954 778888999999998875322235699999999999999999999999999999998 799999
Q ss_pred HHHHHHHHhcCceEEEcCCCCCCCCCCC
Q psy5981 97 AVSALIRKHILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 97 ~vsfav~~~~~~GImITASHNP~~~ng~ 124 (131)
+++|+++++..+||||||||||++|||=
T Consensus 77 ~~~~a~~~~~~ggI~ITaSHnp~~~nGi 104 (459)
T cd03088 77 ALALYAMKRGAPAIMVTGSHIPADRNGL 104 (459)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCCCCCCE
Confidence 9999999983389999999999999983
No 28
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=99.97 E-value=3.3e-30 Score=218.55 Aligned_cols=102 Identities=14% Similarity=0.062 Sum_probs=93.8
Q ss_pred CCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchH
Q psy5981 18 PGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPA 97 (131)
Q Consensus 18 FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~ 97 (131)
|||+||||++++.++++++.+++++++.++.++ +..+|+||||+|.+|++|+++++++|+++|++|+++ |++|||+
T Consensus 1 f~~~giRG~~~~~lt~~~v~~l~~a~~~~l~~~-~~~~VvVg~D~R~~s~~l~~a~~~gL~s~G~~V~~l---g~~pTP~ 76 (445)
T PRK09542 1 IKAYDVRGVVGEQIDEDLVRDVGAAFARLMRAE-GATTVVIGHDMRDSSPELAAAFAEGVTAQGLDVVRI---GLASTDQ 76 (445)
T ss_pred CCccccccccCCCcCHHHHHHHHHHHHHHHHHc-CCCeEEEEeCCCCCHHHHHHHHHHHHHHCCCEEEEe---CCCCCHH
Confidence 899999999998888999999999999888632 245699999999999999999999999999999998 7999999
Q ss_pred HHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 98 VSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 98 vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
++|+++++ + +|+||||||||++|||=
T Consensus 77 ~~~av~~~~~-~Gi~iTaSHNP~~~nG~ 103 (445)
T PRK09542 77 LYFASGLLDC-PGAMFTASHNPAAYNGI 103 (445)
T ss_pred HHheecccCC-CEEEEcCCCCCCccCcE
Confidence 99999999 7 69999999999999993
No 29
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=99.96 E-value=2.3e-30 Score=218.47 Aligned_cols=103 Identities=27% Similarity=0.250 Sum_probs=91.5
Q ss_pred CCCCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCcccc
Q psy5981 15 GQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILS 94 (131)
Q Consensus 15 ~~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~P 94 (131)
-..|||+||||++++.++++++.+++++++.++. .++|+||||+|.+|++|+++++++|++.|++|+++ |++|
T Consensus 3 ~~~Fg~~gIRG~~~~~ltpe~~~~lg~a~~~~l~----~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g~~p 75 (429)
T PRK14322 3 VKYFGTDGIRGVFGETLTDELAFKVGKALGEIVG----EGKVIVGKDTRVSGDSLEAAISAGLTSMGVDVLLC---GILP 75 (429)
T ss_pred cceecCCCcceecCCCcCHHHHHHHHHHHhEEec----CCcEEEEeCCCcCHHHHHHHHHHHHHHCCCeEEEe---cCcC
Confidence 3579999999999988888877777777766543 23499999999999999999999999999999998 8999
Q ss_pred chHHHHHHHHhcCceEEEcCCCCCCCCCCC
Q psy5981 95 TPAVSALIRKHILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 95 TP~vsfav~~~~~~GImITASHNP~~~ng~ 124 (131)
||+++|+++++.++||||||||||++|||=
T Consensus 76 TP~~~~av~~~~~gGI~ITaSHnP~~~nGi 105 (429)
T PRK14322 76 TPAVALLTRITRSFGVVISASHNPPEYNGI 105 (429)
T ss_pred HHHHHHHHhccCCceEEEECCCCChHhCCE
Confidence 999999998777899999999999999994
No 30
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.96 E-value=1.4e-29 Score=213.71 Aligned_cols=100 Identities=27% Similarity=0.294 Sum_probs=92.0
Q ss_pred CCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccch
Q psy5981 17 KPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTP 96 (131)
Q Consensus 17 ~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP 96 (131)
.|||+||||++++..+++++.+++++++.++. +++|+||||+|.+|++|+++++++|+++|++|+++ |++|||
T Consensus 1 ~Fgt~giRG~~~~~lt~~~~~~l~~a~~~~l~----~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~V~~~---g~~~tP 73 (439)
T cd03087 1 LFGTSGIRGVVGEELTPELALKVGKALGTYLG----GGTVVVGRDTRTSGPMLKNAVIAGLLSAGCDVIDI---GIVPTP 73 (439)
T ss_pred CcCcCceeeECCCCcCHHHHHHHHHHHHhhcc----CCeEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEc---CccChH
Confidence 39999999999998888888999998888764 34699999999999999999999999999999987 799999
Q ss_pred HHHHHHHHhcCceEEEcCCCCCCCCCC
Q psy5981 97 AVSALIRKHILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 97 ~vsfav~~~~~~GImITASHNP~~~ng 123 (131)
+++|+++++.++||||||||||++|||
T Consensus 74 ~~~~~v~~~~~gGi~ItaShnp~~~ng 100 (439)
T cd03087 74 ALQYAVRKLGDAGVMITASHNPPEYNG 100 (439)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHCc
Confidence 999999876578999999999999998
No 31
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=99.96 E-value=1.6e-29 Score=213.34 Aligned_cols=100 Identities=18% Similarity=0.243 Sum_probs=89.9
Q ss_pred CCCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccc
Q psy5981 16 QKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILST 95 (131)
Q Consensus 16 ~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PT 95 (131)
+.|||+||||++++.++++++.+++++++.++. .+|+||||+|.+|++++++++++|+++|++|+++ |.+||
T Consensus 2 ~~Fgt~gIRG~~~~~ltpe~~~~lg~a~g~~~~-----~~V~Vg~D~R~ss~~l~~a~~~gL~s~G~~V~d~---g~~pT 73 (430)
T PRK14319 2 RLFGTDGIRGVVNEFLTPEIAFRLGNALGNMVD-----KKIFIAKDTRASGDMLEAALVAGITSAGADVYRC---GVLPT 73 (430)
T ss_pred cccCCCCcceecCCCcCHHHHHHHHHHHHhccC-----CcEEEEeCCCCChHHHHHHHHHHHHHCCCeEEEe---CCcCc
Confidence 579999999999988888888888887777653 3599999999999999999999999999999998 89999
Q ss_pred hHHHHHHHHhcCceEEEcCCCCCCCCCC
Q psy5981 96 PAVSALIRKHILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 96 P~vsfav~~~~~~GImITASHNP~~~ng 123 (131)
|+++|+++..+.+||||||||||++|||
T Consensus 74 P~~~~~~~~~~~gGi~ItaSHnp~~~ng 101 (430)
T PRK14319 74 PALALITKLEDAAGVMISASHNPPEYNG 101 (430)
T ss_pred HHHHHHHhccCceEEEEEeCCCChHHCC
Confidence 9999976655559999999999999999
No 32
>PLN02371 phosphoglucosamine mutase family protein
Probab=99.96 E-value=4.5e-29 Score=218.39 Aligned_cols=106 Identities=18% Similarity=0.098 Sum_probs=92.5
Q ss_pred CCCCcCCccccCC-----c--ccchHHHHHHHHHHHHHhcccC-----CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCc
Q psy5981 16 QKPGTSGLRKPTK-----T--FQQEHYTENFIQSILTALGDKL-----KGSVLVVGGDGRYFGDVAVDKIIKISAANGVA 83 (131)
Q Consensus 16 ~~FGT~GiRg~~g-----~--~~~~~~~~~~~~ai~~~~~~~~-----~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~ 83 (131)
..|||+||||+++ + .++++++.+++++++.++.+.. ...+|+||||+|.+|++|+++++++|+++|++
T Consensus 66 ~lf~~~giRGv~~~g~~g~~v~lTpe~v~~ig~A~a~~l~~~~~~~~~~~~~VvVG~D~R~sS~~l~~a~a~gL~s~Gi~ 145 (583)
T PLN02371 66 KLQNGSDIRGVAVEGVEGEPVTLTPPAVEAIGAAFAEWLLEKKKADGSGELRVSVGRDPRISGPRLADAVFAGLASAGLD 145 (583)
T ss_pred HhhhhcCcceEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccccCCCCeEEEEeCCCCChHHHHHHHHHHHHHCCCE
Confidence 3589999999997 3 5678888999999998885321 12469999999999999999999999999999
Q ss_pred EEEecCCccccchHHHHHHHHh---cCceEEEcCCCCCCCCCCC
Q psy5981 84 KLIVGQNGILSTPAVSALIRKH---ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 84 V~~~~~~g~~PTP~vsfav~~~---~~~GImITASHNP~~~ng~ 124 (131)
|+++ |++|||+++|+++++ +++||||||||||++|||=
T Consensus 146 V~~~---g~~pTP~~~~av~~~~~~~~gGImITASHNP~~~NGi 186 (583)
T PLN02371 146 VVDM---GLATTPAMFMSTLTEREDYDAPIMITASHLPYNRNGL 186 (583)
T ss_pred EEEe---cccCchHHHHHHHhccCCCceEEEEeCCCCCCCCCCE
Confidence 9987 799999999999844 7899999999999999983
No 33
>KOG1220|consensus
Probab=99.95 E-value=2.6e-28 Score=211.41 Aligned_cols=108 Identities=22% Similarity=0.262 Sum_probs=92.8
Q ss_pred CCCCCcCCccccCCcc---cchHHHHHHHHHHHHHhcccCC--CCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecC
Q psy5981 15 GQKPGTSGLRKPTKTF---QQEHYTENFIQSILTALGDKLK--GSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQ 89 (131)
Q Consensus 15 ~~~FGT~GiRg~~g~~---~~~~~~~~~~~ai~~~~~~~~~--~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~ 89 (131)
-+.|||+|+||.|+.. .++-.+.+++|.++.++.+..+ +.+|+||||.|++|..||++++.+|..+|++|++++
T Consensus 59 Ri~fgt~GlRg~m~agf~~mnel~~iq~~qg~a~yl~~~~~~~~~giviG~D~R~~S~~fA~l~a~vf~~~g~~v~lf~- 137 (607)
T KOG1220|consen 59 RIKFGTAGLRGEMRAGFSRMNELTAIQFGQGLAAYLKNQFPSKNLGIVIGHDGRYNSKRFAELVAAVFLLNGFKVYLFS- 137 (607)
T ss_pred ceeeeccccccccccCchhhhHHHHHHHHHHHHHHHHHhCCcccceEEEecCCccchHHHHHHHHHHHHhCCceEEEec-
Confidence 4569999999999873 3444456777888877764332 247999999999999999999999999999999994
Q ss_pred CccccchHHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 90 NGILSTPAVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 90 ~g~~PTP~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
.++|||++.|++.++ +++||||||||||++|||-
T Consensus 138 -~~v~TP~vpfav~~l~~dAgIMiTASHnPk~dNGy 172 (607)
T KOG1220|consen 138 -ELVPTPFVPFAVLTLGADAGIMITASHNPKEDNGY 172 (607)
T ss_pred -cccCCCcchhHHHHhccCceEEEeccCCccccCCE
Confidence 399999999999999 9999999999999999993
No 34
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.8e-27 Score=201.78 Aligned_cols=123 Identities=33% Similarity=0.406 Sum_probs=110.9
Q ss_pred CceeeeeeecccCCCCCCCcCCccccCCccc-chHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHH
Q psy5981 1 MSFKSVTVETKVFDGQKPGTSGLRKPTKTFQ-QEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAA 79 (131)
Q Consensus 1 ~~~~~~~~~~~~~~~~~FGT~GiRg~~g~~~-~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~ 79 (131)
|.+..+++++.+|++++|||||+||..-.|+ ++++..+|+|++..++.+....++++||+|+|+.|+...+.++++|++
T Consensus 1 ~y~~i~~~~t~p~~~~k~GTSG~R~~~~~~~fne~~i~a~~Qai~d~~~~~~~~~~L~vG~D~~~~se~a~~~~lev~aA 80 (524)
T COG0033 1 QYYMIKPDPTNPYQDVKFGTSGHRGSALVFTFNENHILAFIQAIADYRAEGGIGGPLVVGGDTHALSEPAIQSALEVLAA 80 (524)
T ss_pred CCceecCCCCChhhhcCCCCccccCccccCccCHHHHHHHHHHHHHHHhccCCCCceEECCCcccccHHHHHHHHHHHHh
Confidence 4566889999999999999999999999887 889999999999998866555678999999999999999999999999
Q ss_pred CCCcEEEecCCccccchHHHHHHH----Hh-c-CceEEEcCCCCCCCCCC
Q psy5981 80 NGVAKLIVGQNGILSTPAVSALIR----KH-I-LGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 80 ~Gi~V~~~~~~g~~PTP~vsfav~----~~-~-~~GImITASHNP~~~ng 123 (131)
+|+++++..+.|+.|||++|++++ ++ + .+||+||||||||++=|
T Consensus 81 Ngv~~iv~~~~g~~~TPAaSh~I~t~n~k~k~~~~GIvlT~SHNPP~D~G 130 (524)
T COG0033 81 NGVEVIVQGQGGFTPTPAASHAILTHNGKYKALADGIVLTPSHNPPEDGG 130 (524)
T ss_pred cCceEEEecCCCccCchHHHHHHHhhcccccccCCeEEEcCCCCCcccCC
Confidence 999999999999999999999999 66 4 55699999999997643
No 35
>KOG0625|consensus
Probab=99.94 E-value=8.1e-27 Score=196.90 Aligned_cols=123 Identities=60% Similarity=0.890 Sum_probs=115.4
Q ss_pred CceeeeeeecccCCCCCCCcCCccccCCcccchHHHHHHHHHHHHHhc-ccCCCCeEEEEecCCcCHHHHHHHHHHHHHH
Q psy5981 1 MSFKSVTVETKVFDGQKPGTSGLRKPTKTFQQEHYTENFIQSILTALG-DKLKGSVLVVGGDGRYFGDVAVDKIIKISAA 79 (131)
Q Consensus 1 ~~~~~~~~~~~~~~~~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~-~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~ 79 (131)
|++.+++++|+||++|+.||+|+|.++..|..+|++++|+|++-+++. +..++.++|||.|+|+.+.+..+.+++..++
T Consensus 1 m~~~i~tvpTkpyegQKpGTSGLRKkvkvF~qpnY~eNfvQa~~~a~~~~~~kgatLVVGGDGRyy~~~a~~~I~~iaAa 80 (558)
T KOG0625|consen 1 MSFKIETVPTKPYEGQKPGTSGLRKKVKVFKQPNYTENFVQAIMNALPGEKSKGATLVVGGDGRYYNKEAIQIIAKIAAA 80 (558)
T ss_pred CceEEEeccCCccCCCCCCccchhhcceeecCCchHHHHHHHHHhccccccccCceEEEcCCCcchhHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999999999998875 4456678999999999999999999999999
Q ss_pred CCCcEEEecCCccccchHHHHHHHHh--cCceEEEcCCCCCCCCCC
Q psy5981 80 NGVAKLIVGQNGILSTPAVSALIRKH--ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 80 ~Gi~V~~~~~~g~~PTP~vsfav~~~--~~~GImITASHNP~~~ng 123 (131)
+|+.-++++++|+.+||++|..+|++ +.|||+.||||||.+.+|
T Consensus 81 NGv~rlivGqnGiLSTPAvS~iIRk~~ka~GGiILTASHnPGGP~~ 126 (558)
T KOG0625|consen 81 NGVGRLIVGQNGILSTPAVSCIIRKYIKAGGGIILTASHNPGGPEG 126 (558)
T ss_pred cCcceEEeccCCcccchHHHHHHHhhcccCceEEEEeccCCCCCCC
Confidence 99999999999999999999999997 788899999999988764
No 36
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.12 E-value=3.7e-11 Score=99.11 Aligned_cols=28 Identities=25% Similarity=0.067 Sum_probs=21.7
Q ss_pred CCCcCCccccCCcccchHHHHHHHHHHH
Q psy5981 17 KPGTSGLRKPTKTFQQEHYTENFIQSIL 44 (131)
Q Consensus 17 ~FGT~GiRg~~g~~~~~~~~~~~~~ai~ 44 (131)
.|||+|+||+++...+++++.+++.+++
T Consensus 1 ~fg~~gi~G~~n~~itpe~~~~lg~a~g 28 (355)
T cd03084 1 IFGTSGVRGVVGDDITPETAVALGQAIG 28 (355)
T ss_pred CCcccCcccccCCcCCHHHHHHHHHHHh
Confidence 3999999999998777776666655544
No 37
>PLN02895 phosphoacetylglucosamine mutase
Probab=98.96 E-value=3.5e-09 Score=93.32 Aligned_cols=50 Identities=26% Similarity=0.363 Sum_probs=47.4
Q ss_pred CCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh
Q psy5981 53 GSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH 105 (131)
Q Consensus 53 ~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~ 105 (131)
...|+||||+|.||+.++++++++|.+.|++|+++ |++|||+++|+++..
T Consensus 127 ~~~V~vG~DtR~Ss~~l~~a~~~gl~~~G~~v~d~---G~~tTP~l~~~v~~~ 176 (562)
T PLN02895 127 PAEVLLGRDTRPSGPALLAAALKGVRAIGARAVDM---GILTTPQLHWMVRAA 176 (562)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHHCCCCEEEe---CcCCcHHHHHHHHhc
Confidence 45799999999999999999999999999999998 899999999999877
No 38
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=98.89 E-value=9.6e-09 Score=90.99 Aligned_cols=50 Identities=22% Similarity=0.209 Sum_probs=47.2
Q ss_pred CCeEEEEecCCcCHHHHHHHHHHHHH-HCCCcEEEecCCccccchHHHHHHHHh
Q psy5981 53 GSVLVVGGDGRYFGDVAVDKIIKISA-ANGVAKLIVGQNGILSTPAVSALIRKH 105 (131)
Q Consensus 53 ~~~vvVG~D~R~~s~~~a~~~a~~L~-~~Gi~V~~~~~~g~~PTP~vsfav~~~ 105 (131)
...|+||||+|.||+.++++++++|. +.|++|+++ |++|||+++|+++..
T Consensus 152 ~~~V~vGrDtR~Ss~~L~~al~~gl~~~~G~~v~d~---G~~tTP~l~y~v~~~ 202 (585)
T PTZ00302 152 KAKVHVGRDTRPSSPELVSALLRGLKLLIGSNVRNF---GIVTTPQLHFLVAFA 202 (585)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHhcCCcEEEe---CCCCcHHHHHHHHHh
Confidence 35699999999999999999999999 999999998 899999999999877
No 39
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=98.84 E-value=6.6e-09 Score=90.64 Aligned_cols=54 Identities=24% Similarity=0.307 Sum_probs=49.9
Q ss_pred CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCc
Q psy5981 52 KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILG 108 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~ 108 (131)
.+..|+||+|+|.+|++++++++++|.+.|++|+++ |.+|||++.|+++++ +.+
T Consensus 101 ~~~~V~vg~D~R~ss~~l~~a~~~gl~~~G~~V~d~---g~~~TP~~~~~v~~~~~~g 155 (513)
T cd03086 101 VPANVFVGRDTRPSGPALLQALLDGLKALGGNVIDY---GLVTTPQLHYLVRAANTEG 155 (513)
T ss_pred CCCEEEEEeCCChhHHHHHHHHHHHHHHCCCeEEEc---cCcCcHHHHHHHHhcCCCC
Confidence 345799999999999999999999999999999998 899999999999999 654
No 40
>PLN02895 phosphoacetylglucosamine mutase
Probab=98.61 E-value=4e-08 Score=86.76 Aligned_cols=44 Identities=16% Similarity=0.042 Sum_probs=36.7
Q ss_pred HHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 71 DKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 71 ~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
+..++.|.+.|++|.++. .+.|| ++ +++||||||||||++|||-
T Consensus 32 R~~a~~l~~~~~r~~~~~--~~r~~--------~~~~~~gVmITaSHnp~~~nG~ 76 (562)
T PLN02895 32 RTDASLLESTVFRVGILA--ALRSL--------KTGAATGLMITASHNPVSDNGV 76 (562)
T ss_pred HHHHHHHHhcCeEEEEeC--CCCcc--------ccCCCcEEEEeCCCCCcccCcE
Confidence 446789999999999883 56666 44 7899999999999999994
No 41
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=98.16 E-value=7.5e-07 Score=77.84 Aligned_cols=18 Identities=17% Similarity=0.039 Sum_probs=16.5
Q ss_pred CceEEEcCCCCCCCCCCC
Q psy5981 107 LGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 107 ~~GImITASHNP~~~ng~ 124 (131)
.+||||||||||++|||=
T Consensus 36 ~~gimITaSHNP~~~NGi 53 (513)
T cd03086 36 TIGVMITASHNPVEDNGV 53 (513)
T ss_pred ceEEEECCCcCCcccCeE
Confidence 589999999999999993
No 42
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=98.09 E-value=1.3e-06 Score=77.56 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=17.1
Q ss_pred cCceEEEcCCCCCCCCCC
Q psy5981 106 ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 106 ~~~GImITASHNP~~~ng 123 (131)
+.+||||||||||++|||
T Consensus 75 ~~~GImiTASHNp~~~NG 92 (585)
T PTZ00302 75 KSVGVMITASHNPIQDNG 92 (585)
T ss_pred cceeEEEeCCCCCcccCC
Confidence 678999999999999998
No 43
>KOG2537|consensus
Probab=97.23 E-value=0.00045 Score=60.54 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=46.5
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHhcCceEEE
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHILGRLVK 112 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~~~~GImI 112 (131)
..|++|||+|.+|+.+++.+..++......+..+ |++.||.+-|.++.....+-|.
T Consensus 125 ~~v~~G~DtR~s~~~L~~~~~~~~~~l~a~~~d~---GvvtTPqLHy~v~~~n~~~~~~ 180 (539)
T KOG2537|consen 125 AHVVVGRDTRPSSPRLLNAVRDGVGALFAQVDDY---GVVTTPQLHYMVRASNTKGAYG 180 (539)
T ss_pred ceEEEecCCCCccHHHHHHHHHHHHhhheEecce---EEEcchhhhhhhhhcccccccc
Confidence 4699999999999999999999987777666655 8999999999998873334444
No 44
>KOG2537|consensus
Probab=96.89 E-value=0.00038 Score=61.02 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=16.9
Q ss_pred cCceEEEcCCCCCCCCCCC
Q psy5981 106 ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 106 ~~~GImITASHNP~~~ng~ 124 (131)
..-|+||||||||-++||-
T Consensus 59 s~IGvMiTASHNp~~dNGv 77 (539)
T KOG2537|consen 59 STIGVMITASHNPVEDNGV 77 (539)
T ss_pred CeeEEEEEeccCchhhcCc
Confidence 4579999999999999994
No 45
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=85.70 E-value=7.4 Score=28.96 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=44.4
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHH----h-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRK----H-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~----~-~~~GImITAS 115 (131)
+|+||-|. .+.++.+.+.+-|.+.|++|.+++.+..+.-|-+++.+-+ . ++-||+|-+|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~~~~~GIliCGT 65 (142)
T PRK08621 2 AIIIGADK--AGFELKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNKSEDNLGIVIDAY 65 (142)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 48899996 5788899999999999999999854223556777776533 3 5678888665
No 46
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=85.54 E-value=7 Score=33.68 Aligned_cols=57 Identities=12% Similarity=-0.006 Sum_probs=42.2
Q ss_pred CeEEEEecCC-cCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcC
Q psy5981 54 SVLVVGGDGR-YFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVP 114 (131)
Q Consensus 54 ~~vvVG~D~R-~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITA 114 (131)
++|+|-||+= .+.+.++++++++|.+.|++|..+. +... -.+..+... .+.|++|=.
T Consensus 247 ~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~---~~~~-~~~eI~~~i~~a~~~vvGs 305 (388)
T COG0426 247 GKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVIN---LEDA-DPSEIVEEILDAKGLVVGS 305 (388)
T ss_pred ceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEE---cccC-CHHHHHHHHhhcceEEEec
Confidence 3799999966 5667889999999999999998773 2222 556666666 566777744
No 47
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=84.15 E-value=9.7 Score=28.30 Aligned_cols=59 Identities=19% Similarity=0.133 Sum_probs=44.0
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHH----HHh-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALI----RKH-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav----~~~-~~~GImITAS 115 (131)
+|+||-|. .+.++.+.+.+-|.+.|++|++++....+--|-.++.+ .+. ++-||+|-.|
T Consensus 2 kI~IgsDh--~G~~lK~~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~e~~~GIliCGt 65 (141)
T TIGR01118 2 AIIIGSDL--AGKRLKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQKDEQNLGIVIDAY 65 (141)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 48899985 57889999999999999999998532234557666665 333 6788988665
No 48
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=82.91 E-value=8 Score=28.53 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=41.1
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCc--cccchHHHHHH----HHh-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNG--ILSTPAVSALI----RKH-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g--~~PTP~vsfav----~~~-~~~GImITAS 115 (131)
+|+||-|. .+.++.+.+.+-|.+.|++|.+++... .+.=|-+++.+ .+. ++-||+|-.|
T Consensus 1 KI~igsDh--~g~~lK~~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~d~GIliCgt 66 (140)
T PF02502_consen 1 KIAIGSDH--AGFELKEAIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVASGEADRGILICGT 66 (140)
T ss_dssp EEEEEE-G--GGHHHHHHHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred CEEEEeCH--HHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHcccCCeEEEEcCC
Confidence 47889885 578889999999999999999984222 23356666654 333 6788988765
No 49
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=82.82 E-value=10 Score=28.18 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=43.1
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHH----HHh-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALI----RKH-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav----~~~-~~~GImITAS 115 (131)
+|+||-|. .+.++.+.+.+-|.+.|++|.+++. ..+--|-.+..+ .+. ++-||+|-+|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~-~~~dypd~a~~va~~V~~~e~~~GIliCGt 64 (141)
T PRK12613 2 AIILGADA--HGNALKELIKSFLQEEGYDIIDVTD-INSDFIDNTLAVAKAVNEAEGRLGIMVDAY 64 (141)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCC-CCCChHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 48899885 5788899999999999999999843 124446666655 333 6778988765
No 50
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=80.49 E-value=16 Score=27.26 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=42.8
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCc---cccchHHHHHHH----Hh-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNG---ILSTPAVSALIR----KH-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g---~~PTP~vsfav~----~~-~~~GImITAS 115 (131)
+|+||-|. .+..+.+.+.+-|.+.|++|.+++... .+.-|-+++.+- .. ++-||+|-.|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGt 68 (148)
T PRK05571 2 KIAIGSDH--AGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGT 68 (148)
T ss_pred EEEEEeCC--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 48899996 578888899999999999999985321 234555555542 23 6778988765
No 51
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=76.76 E-value=20 Score=26.60 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=41.5
Q ss_pred EEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCC--ccccchHHHHHHHH----h-cCceEEEcCC
Q psy5981 56 LVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQN--GILSTPAVSALIRK----H-ILGRLVKVPS 115 (131)
Q Consensus 56 vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~--g~~PTP~vsfav~~----~-~~~GImITAS 115 (131)
|+||-|. .+.++.+.+.+-|.+.|++|.+++.. ..+.-|-++..+-+ . ++-||+|-+|
T Consensus 2 I~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGt 66 (143)
T TIGR01120 2 IAIGSDH--AGFILKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICGT 66 (143)
T ss_pred EEEEeCc--chHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEEcCC
Confidence 7888885 57888899999999999999988431 12445655555422 3 6778888655
No 52
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=74.69 E-value=16 Score=24.48 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHhcCceEEEcCCCCCCCCCC--------------CCcccccC
Q psy5981 68 VAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHILGRLVKVPSSNPSRTIR--------------PCPLLITK 131 (131)
Q Consensus 68 ~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~~~~GImITASHNP~~~ng--------------~~~~~~~~ 131 (131)
...+.+.+-+...|+++......+--|...+.-...++ ...++|-++|.+..+.. |||+||-|
T Consensus 56 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~-~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvlvv~ 132 (132)
T cd01988 56 KLLRQAERIAASLGVPVHTIIRIDHDIASGILRTAKER-QADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVAVVK 132 (132)
T ss_pred HHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhc-CCCEEEEecCCCCCccceecCchHHHHHhcCCCCEEEeC
Confidence 44444555666788886533111113445555555554 44688889998877633 69988754
No 53
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=74.56 E-value=26 Score=26.91 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=42.4
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCc--cccchHHHHHH----HHh-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNG--ILSTPAVSALI----RKH-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g--~~PTP~vsfav----~~~-~~~GImITAS 115 (131)
+|+||-|. .+..+.+.+.+-|.+.|++|.+++... .+.-|-++..+ ... ++-||+|-.|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGT 67 (171)
T TIGR01119 2 KIAIGCDH--IVTDVKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICGT 67 (171)
T ss_pred EEEEEeCC--chHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 48899996 578889999999999999999985321 23346555554 233 6778888665
No 54
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=74.25 E-value=29 Score=25.86 Aligned_cols=59 Identities=19% Similarity=-0.018 Sum_probs=42.8
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCc---cccchHHHHHH----HHh-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNG---ILSTPAVSALI----RKH-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g---~~PTP~vsfav----~~~-~~~GImITAS 115 (131)
+|+||.|. .+-++.+.+.+-|.+.|++|.+++... ...-|-++..+ ... ++-||+|-.|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGt 68 (148)
T TIGR02133 2 RVVLGHDH--AGFEYKEALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGS 68 (148)
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCC
Confidence 48899886 577888889999999999999885311 23356666654 333 6778988765
No 55
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=73.86 E-value=30 Score=26.59 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=43.1
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCC--ccccchHHHHHHH----Hh-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQN--GILSTPAVSALIR----KH-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~--g~~PTP~vsfav~----~~-~~~GImITAS 115 (131)
+|+||-|. .+-.+.+.+.+-|.+.|++|.+++.. ..+.-|-+++.+- .. ++-||+|-+|
T Consensus 2 kI~IgsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~~g~~d~GIliCGT 67 (171)
T PRK08622 2 KIAIGCDH--IVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGT 67 (171)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCcEEEEEcCC
Confidence 48899986 57788889999999999999998531 1244566666653 23 6778988665
No 56
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=72.89 E-value=11 Score=24.23 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=31.1
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++|++..|+=..+..+++.+.+-|...|++|..+
T Consensus 44 ~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 44 KEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 5699999999999999999999999999998754
No 57
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=71.63 E-value=32 Score=25.81 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=43.1
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHH--CCCcEEEecCCc--cccchHHHHHHHH----h-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAA--NGVAKLIVGQNG--ILSTPAVSALIRK----H-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~--~Gi~V~~~~~~g--~~PTP~vsfav~~----~-~~~GImITAS 115 (131)
+|+||-|. .+..+.+.+.+-|.+ .|++|++++... .+.-|-+++.+-+ . ++-||+|-.|
T Consensus 4 kI~igsDh--aG~~lK~~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~~~GIliCGt 71 (151)
T PTZ00215 4 KVAIGSDH--AGFDLKNEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILVCGS 71 (151)
T ss_pred EEEEEeCC--chHHHHHHHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 59999996 578888999999999 999999985321 2445655555432 3 5668988765
No 58
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=71.47 E-value=30 Score=26.52 Aligned_cols=59 Identities=8% Similarity=0.010 Sum_probs=42.5
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCC--ccccchHHHHHHH----Hh-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQN--GILSTPAVSALIR----KH-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~--g~~PTP~vsfav~----~~-~~~GImITAS 115 (131)
+|+||-|. .+..+.+.+.+-|.+.|++|.+++.. ..+.-|-+++.+- .. ++-||+|-+|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 67 (171)
T PRK12615 2 KIAIGCDH--IVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICGT 67 (171)
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 48899986 47788888999999999999987531 1244566666652 23 6778888665
No 59
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=71.01 E-value=45 Score=29.10 Aligned_cols=61 Identities=18% Similarity=0.087 Sum_probs=39.7
Q ss_pred CCeEEEEecCCcC-HHHHHHHHHHHHHHC--CCcEEEecCCccccchHHHHHHHHh--cCceEEEcCCCC
Q psy5981 53 GSVLVVGGDGRYF-GDVAVDKIIKISAAN--GVAKLIVGQNGILSTPAVSALIRKH--ILGRLVKVPSSN 117 (131)
Q Consensus 53 ~~~vvVG~D~R~~-s~~~a~~~a~~L~~~--Gi~V~~~~~~g~~PTP~vsfav~~~--~~~GImITASHN 117 (131)
.++|+|-|++.+. .+.+|+++++++.+. |++|.+.. +.-+. .+...... +++=|.-|.++|
T Consensus 251 ~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~---v~~~~-~~~i~~~~~~ad~vilGspT~~ 316 (479)
T PRK05452 251 EDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFN---VARSD-KNEILTNVFRSKGVLVGSSTMN 316 (479)
T ss_pred cCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEE---CCCCC-HHHHHhHHhhCCEEEEECCccC
Confidence 4569999999966 788999999999976 67766542 33333 33333332 555455555554
No 60
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=70.04 E-value=31 Score=28.98 Aligned_cols=62 Identities=11% Similarity=0.015 Sum_probs=40.7
Q ss_pred CCeEEEEecCCc-CHHHHHHHHHHHHH--HCCCcEEEecCCccccchHHHHHHHHh--cCceEEEcCCCCC
Q psy5981 53 GSVLVVGGDGRY-FGDVAVDKIIKISA--ANGVAKLIVGQNGILSTPAVSALIRKH--ILGRLVKVPSSNP 118 (131)
Q Consensus 53 ~~~vvVG~D~R~-~s~~~a~~~a~~L~--~~Gi~V~~~~~~g~~PTP~vsfav~~~--~~~GImITASHNP 118 (131)
.++|+|-|++.+ +.+++|+++++++. +.|++|.+.. +.-+. .+-..... +++=|.-|.++|-
T Consensus 247 ~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~---~~~~~-~~~i~~~~~~~d~ii~GspT~~~ 313 (394)
T PRK11921 247 ENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYN---SAKSD-KNDIITEVFKSKAILVGSSTINR 313 (394)
T ss_pred cCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEE---CCCCC-HHHHHHHHHhCCEEEEECCCcCc
Confidence 467999999995 56778999999998 7898886652 22222 22222232 5555666666653
No 61
>PRK09271 flavodoxin; Provisional
Probab=70.03 E-value=11 Score=27.51 Aligned_cols=29 Identities=7% Similarity=-0.039 Sum_probs=16.0
Q ss_pred EEEEecCCc-CHHHHHHHHHHHHHHCCCcE
Q psy5981 56 LVVGGDGRY-FGDVAVDKIIKISAANGVAK 84 (131)
Q Consensus 56 vvVG~D~R~-~s~~~a~~~a~~L~~~Gi~V 84 (131)
|+|-|.+.. +.+.+|+.+++.|.+.|++|
T Consensus 3 v~IvY~S~tGnTe~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 3 ILLAYASLSGNTREVAREIEERCEEAGHEV 32 (160)
T ss_pred EEEEEEcCCchHHHHHHHHHHHHHhCCCee
Confidence 455555554 34555666666666555544
No 62
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=69.43 E-value=15 Score=26.59 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=25.4
Q ss_pred EEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcC
Q psy5981 58 VGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVP 114 (131)
Q Consensus 58 VG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITA 114 (131)
+|-|..--+..| ++..|.++|++|++.+ ..+|...+.=++.+. ++ -|.|++
T Consensus 10 ~g~D~Hd~g~~i---v~~~l~~~GfeVi~lg--~~~s~e~~v~aa~e~~ad-ii~iSs 61 (132)
T TIGR00640 10 MGQDGHDRGAKV---IATAYADLGFDVDVGP--LFQTPEEIARQAVEADVH-VVGVSS 61 (132)
T ss_pred eCCCccHHHHHH---HHHHHHhCCcEEEECC--CCCCHHHHHHHHHHcCCC-EEEEcC
Confidence 344555444444 3555777777777652 234444333344444 33 255544
No 63
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=69.05 E-value=29 Score=25.75 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=40.0
Q ss_pred EEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCC--ccccchHHHHHHHH----h-cCceEEEcCC
Q psy5981 56 LVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQN--GILSTPAVSALIRK----H-ILGRLVKVPS 115 (131)
Q Consensus 56 vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~--g~~PTP~vsfav~~----~-~~~GImITAS 115 (131)
|+||-|. .+..+.+.+.+-|.+.|++|.+++.. ..+.-|-+++.+-+ . ++-||+|-.|
T Consensus 1 I~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGt 65 (144)
T TIGR00689 1 IAIGSDH--AGLELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILICGT 65 (144)
T ss_pred CEEeeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 4577775 47788888999999999999988431 12445655555532 3 6778888665
No 64
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=64.18 E-value=20 Score=25.04 Aligned_cols=48 Identities=10% Similarity=-0.067 Sum_probs=31.9
Q ss_pred cCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh--cCceEEEcCCCC
Q psy5981 64 YFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH--ILGRLVKVPSSN 117 (131)
Q Consensus 64 ~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~--~~~GImITASHN 117 (131)
-+++.+|+.+++.|.+.|++|..+. +.-+... .... .+.-++++.++|
T Consensus 8 G~te~~A~~ia~~l~~~g~~~~~~~---~~~~~~~---~~~~~~~~~~i~~~sT~~ 57 (143)
T PF00258_consen 8 GNTEKMAEAIAEGLRERGVEVRVVD---LDDFDDS---PSDLSEYDLLIFGVSTYG 57 (143)
T ss_dssp SHHHHHHHHHHHHHHHTTSEEEEEE---GGGSCHH---HHHHCTTSEEEEEEEEET
T ss_pred hhHHHHHHHHHHHHHHcCCceeeec---hhhhhhh---hhhhhhhceeeEeecccC
Confidence 3678899999999999998776552 2222221 3333 456677887777
No 65
>PRK05569 flavodoxin; Provisional
Probab=63.17 E-value=49 Score=23.12 Aligned_cols=32 Identities=13% Similarity=-0.092 Sum_probs=21.0
Q ss_pred eEEEEecCCc-CHHHHHHHHHHHHHHCCCcEEE
Q psy5981 55 VLVVGGDGRY-FGDVAVDKIIKISAANGVAKLI 86 (131)
Q Consensus 55 ~vvVG~D~R~-~s~~~a~~~a~~L~~~Gi~V~~ 86 (131)
+++|-|.+.. +++.+|+.+++++.+.|++|..
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~ 35 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTI 35 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 3666677664 4567777777777777766543
No 66
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=63.17 E-value=40 Score=25.41 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=38.9
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccc-cc--hHHHHHH----HHh-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGIL-ST--PAVSALI----RKH-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~-PT--P~vsfav----~~~-~~~GImITAS 115 (131)
+|+||-|. .+.++.+.+.+-|.+.|++|++++-.... ++ |-.+..+ ... ++-||+|-++
T Consensus 2 kIaig~Dh--ag~~lK~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGT 68 (151)
T COG0698 2 KIAIGSDH--AGYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGT 68 (151)
T ss_pred cEEEEcCc--ccHHHHHHHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecC
Confidence 47888885 67888899999999999999987311111 22 3333333 222 5778888654
No 67
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=62.55 E-value=30 Score=28.92 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=42.0
Q ss_pred CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCCC
Q psy5981 52 KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPSR 120 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~~ 120 (131)
++.+|.+-.|.+.+ .++..+..++..|+++.++...++.|.+-+-...... ...|.-++-+|||.+
T Consensus 155 ~gl~ia~vGD~~~~---v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~ 221 (334)
T PRK01713 155 SEISYVYIGDARNN---MGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDK 221 (334)
T ss_pred CCcEEEEECCCccC---HHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHH
Confidence 44567666798643 5666677788899999988766777776543223333 223444555677753
No 68
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=62.46 E-value=23 Score=30.53 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=40.8
Q ss_pred CCCeEEEEec-----CCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCCC
Q psy5981 52 KGSVLVVGGD-----GRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPSR 120 (131)
Q Consensus 52 ~~~~vvVG~D-----~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~~ 120 (131)
.+.+|++-+| +|.+ ..++..+..++..|++|.++...++.|-|.+--..++. ...|.-++-+|||.+
T Consensus 186 ~g~kVaivg~~~~~~g~~~--~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~e 258 (395)
T PRK07200 186 KGKKIAMTWAYSPSYGKPL--SVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEE 258 (395)
T ss_pred CCCEEEEEeccccccCCcc--hHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHH
Confidence 3346776655 5543 44566667778889999998766666667653333333 223444566677754
No 69
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=62.38 E-value=24 Score=26.28 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=41.4
Q ss_pred CCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHH-HHHh--cCceEEEcCCCCCCCC
Q psy5981 62 GRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSAL-IRKH--ILGRLVKVPSSNPSRT 121 (131)
Q Consensus 62 ~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfa-v~~~--~~~GImITASHNP~~~ 121 (131)
.|..+.++...+.+-+..++.+|+++ | .||.+.-. ..++ .-.|+.|.+.|+|+..
T Consensus 27 ~r~~g~dl~~~ll~~~~~~~~~v~ll---G--~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~ 84 (171)
T cd06533 27 ERVTGSDLMPALLELAAQKGLRVFLL---G--AKPEVLEKAAERLRARYPGLKIVGYHHGYFG 84 (171)
T ss_pred cccCcHHHHHHHHHHHHHcCCeEEEE---C--CCHHHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 57889999999999999999999987 3 44444333 3333 4578999999998864
No 70
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=61.71 E-value=22 Score=26.59 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=28.7
Q ss_pred CCeEEE---EecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHH
Q psy5981 53 GSVLVV---GGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVS 99 (131)
Q Consensus 53 ~~~vvV---G~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vs 99 (131)
+.+|+| |-|...-+. +.+++.|++.|++|+.. |...||.=.
T Consensus 12 rprvlvak~GlDgHd~ga---kvia~~l~d~GfeVi~~---g~~~tp~e~ 55 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGA---KVIARALADAGFEVINL---GLFQTPEEA 55 (143)
T ss_pred CceEEEeccCccccccch---HHHHHHHHhCCceEEec---CCcCCHHHH
Confidence 345654 455555444 44688899999999876 889999533
No 71
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=60.68 E-value=73 Score=24.27 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=42.2
Q ss_pred CeEEEE---ecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCC
Q psy5981 54 SVLVVG---GDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNP 118 (131)
Q Consensus 54 ~~vvVG---~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP 118 (131)
++|+++ .|....+..+ ++..|.++|++|++++. -+|...+--++++. .+ -|.+++|-.+
T Consensus 85 ~~vv~~t~~gd~H~lG~~~---v~~~l~~~G~~vi~LG~--~vp~e~~v~~~~~~~pd-~v~lS~~~~~ 147 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNI---VVTMLRANGFDVIDLGR--DVPIDTVVEKVKKEKPL-MLTGSALMTT 147 (197)
T ss_pred CeEEEEeCCCchhHHHHHH---HHHHHHhCCcEEEECCC--CCCHHHHHHHHHHcCCC-EEEEcccccc
Confidence 466544 6777666655 46679999999999863 57877777778887 54 4778877544
No 72
>PRK06756 flavodoxin; Provisional
Probab=60.26 E-value=58 Score=23.11 Aligned_cols=33 Identities=12% Similarity=-0.049 Sum_probs=20.2
Q ss_pred eEEEEecCC-cCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 55 VLVVGGDGR-YFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 55 ~vvVG~D~R-~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+|+|-|+++ -+.+.+|+.+++.|...|++|...
T Consensus 3 kv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~ 36 (148)
T PRK06756 3 KLVMIFASMSGNTEEMADHIAGVIRETENEIEVI 36 (148)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEe
Confidence 356666666 344556677777777677665443
No 73
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=59.66 E-value=19 Score=23.61 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=29.0
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++|+|+.|....+....+.+..-....|.+++++
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l 36 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLL 36 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEE
Confidence 4699999999999999988888888888887765
No 74
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=58.93 E-value=76 Score=23.93 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=26.0
Q ss_pred eEEEEecCCc-CHHHHHHHHHHHHHH-CCCcEEEe
Q psy5981 55 VLVVGGDGRY-FGDVAVDKIIKISAA-NGVAKLIV 87 (131)
Q Consensus 55 ~vvVG~D~R~-~s~~~a~~~a~~L~~-~Gi~V~~~ 87 (131)
+|+|-|.+.. +.+.+++++++++.+ .|++|.++
T Consensus 3 kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~ 37 (200)
T PRK03767 3 KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIK 37 (200)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEE
Confidence 4777777754 488899999999988 89988655
No 75
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=58.21 E-value=68 Score=23.18 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=31.2
Q ss_pred EecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcC
Q psy5981 59 GGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVP 114 (131)
Q Consensus 59 G~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITA 114 (131)
+.|....+..+ ++..|.++|++|++++. -+|..-+.=++.+. ++ -|.+++
T Consensus 12 ~gD~H~lG~~i---v~~~lr~~G~eVi~LG~--~vp~e~i~~~a~~~~~d-~V~lS~ 62 (137)
T PRK02261 12 GADCHAVGNKI---LDRALTEAGFEVINLGV--MTSQEEFIDAAIETDAD-AILVSS 62 (137)
T ss_pred CCChhHHHHHH---HHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCCC-EEEEcC
Confidence 35666666544 45568888888888742 36666666666666 43 355554
No 76
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=58.06 E-value=20 Score=28.65 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=40.0
Q ss_pred CCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCCC
Q psy5981 62 GRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPSR 120 (131)
Q Consensus 62 ~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~~ 120 (131)
.|.++.++...+.+.....|.+|+++ |-.|. ++.=+..++ ..-|+.|-+.|+|+-
T Consensus 86 ~Rv~G~dl~~~ll~~~~~~~~~v~ll---G~~~~-v~~~a~~~l~~~y~l~i~g~~~Gyf 141 (243)
T PRK03692 86 SRVAGADLWEALMARAGKEGTPVFLV---GGKPE-VLAQTEAKLRTQWNVNIVGSQDGYF 141 (243)
T ss_pred CeeChHHHHHHHHHHHHhcCCeEEEE---CCCHH-HHHHHHHHHHHHhCCEEEEEeCCCC
Confidence 48899999999998888999999887 43333 344445544 323899989998764
No 77
>PRK05568 flavodoxin; Provisional
Probab=58.05 E-value=30 Score=24.25 Aligned_cols=32 Identities=9% Similarity=-0.045 Sum_probs=18.9
Q ss_pred EEEEecCC-cCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 56 LVVGGDGR-YFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 56 vvVG~D~R-~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++|-|++. -+.+.+++.+++++.+.|++|..+
T Consensus 4 ~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~ 36 (142)
T PRK05568 4 INIIYWSGTGNTEAMANLIAEGAKENGAEVKLL 36 (142)
T ss_pred EEEEEECCCchHHHHHHHHHHHHHHCCCeEEEE
Confidence 55666665 344555666666666666655443
No 78
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=57.91 E-value=35 Score=25.52 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcccCCCCeEEEEe-cCC-------cCHHHHHHHHHHHHHHCCCcE
Q psy5981 37 ENFIQSILTALGDKLKGSVLVVGG-DGR-------YFGDVAVDKIIKISAANGVAK 84 (131)
Q Consensus 37 ~~~~~ai~~~~~~~~~~~~vvVG~-D~R-------~~s~~~a~~~a~~L~~~Gi~V 84 (131)
.+....+++++.++....-+|.|| |.+ ..|+.=|+++++.|.+.|+..
T Consensus 99 ~~~L~~~a~~L~~~p~~~i~V~GHTD~~Gs~~yN~~LS~rRA~aV~~~L~~~Gv~~ 154 (190)
T COG2885 99 QATLDELAKYLKKNPITRILVEGHTDSTGSDEYNQALSERRAEAVADYLVSQGVVA 154 (190)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEecCCCCCCHHHhHHHHHHHHHHHHHHHHHcCCCc
Confidence 445566777776543334467887 555 557777999999999999653
No 79
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=56.93 E-value=40 Score=25.09 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=41.0
Q ss_pred CCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHH-HHHHh--cCceEEEcCCCCCCC
Q psy5981 62 GRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSA-LIRKH--ILGRLVKVPSSNPSR 120 (131)
Q Consensus 62 ~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsf-av~~~--~~~GImITASHNP~~ 120 (131)
.|.++.+|...+.+-+...|.++++++ .+|.+.- +..++ .-.|+.|...|+|+-
T Consensus 29 ~rv~g~dl~~~l~~~~~~~~~~ifllG-----~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f 85 (172)
T PF03808_consen 29 ERVTGSDLFPDLLRRAEQRGKRIFLLG-----GSEEVLEKAAANLRRRYPGLRIVGYHHGYF 85 (172)
T ss_pred cccCHHHHHHHHHHHHHHcCCeEEEEe-----CCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 578999999999999999999998873 3444433 33333 346899999999975
No 80
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=56.58 E-value=28 Score=29.23 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=42.8
Q ss_pred CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCCC
Q psy5981 52 KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPSR 120 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~~ 120 (131)
++.+|.+-.|.+.+ .++..+..++..|+++.++...++.|.+-+-...++. ...|.-|+-+|||.+
T Consensus 155 ~g~~ia~vGD~~~~---v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~e 221 (336)
T PRK03515 155 NEMTLAYAGDARNN---MGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAE 221 (336)
T ss_pred CCCEEEEeCCCcCc---HHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHH
Confidence 34566655687542 4566667778889999998777777877554333443 334555667788754
No 81
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=56.40 E-value=36 Score=24.78 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=29.4
Q ss_pred EEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcC
Q psy5981 58 VGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVP 114 (131)
Q Consensus 58 VG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITA 114 (131)
|+-|..--+.. .++..|.++|++|++++. -+|...+.=+++++ ++. |.+|+
T Consensus 7 v~gD~HdiGkn---iv~~~L~~~GfeVidLG~--~v~~e~~v~aa~~~~adi-VglS~ 58 (128)
T cd02072 7 IGSDCHAVGNK---ILDHAFTEAGFNVVNLGV--LSPQEEFIDAAIETDADA-ILVSS 58 (128)
T ss_pred eCCchhHHHHH---HHHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCCCE-EEEec
Confidence 45666655554 356668888888888732 24444454455555 443 55544
No 82
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=56.04 E-value=13 Score=23.99 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=23.7
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEE
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLI 86 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~ 86 (131)
+.|++..|.=.-++..++.+.+-|...|++|..
T Consensus 47 ~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~~ 79 (81)
T PF13662_consen 47 KEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVTR 79 (81)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHG--------
T ss_pred ceEEEEeCcCHHHHHHHHHHHHHHHhhcccccc
Confidence 579999999999999999999999999999864
No 83
>PF13362 Toprim_3: Toprim domain
Probab=55.80 E-value=45 Score=21.97 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=31.2
Q ss_pred CCeEEEEecCCcC--HHHHHHHHHHHHHHCCCcEEEe
Q psy5981 53 GSVLVVGGDGRYF--GDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 53 ~~~vvVG~D~R~~--s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
.++|+|.-|.=.. ++..+..+++.|.+.|+.+..+
T Consensus 41 ~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~ 77 (96)
T PF13362_consen 41 GRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIV 77 (96)
T ss_pred CCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEE
Confidence 4569999998888 9999999999999999998765
No 84
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=55.04 E-value=52 Score=22.56 Aligned_cols=30 Identities=7% Similarity=-0.119 Sum_probs=17.4
Q ss_pred EEecCC-cCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 58 VGGDGR-YFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 58 VG~D~R-~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
|-|+++ -+++.+|+.+++.+.+.|++|..+
T Consensus 3 Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~ 33 (140)
T TIGR01753 3 IVYASMTGNTEEMANIIAEGLKEAGAEVDLL 33 (140)
T ss_pred EEEECCCcHHHHHHHHHHHHHHhcCCeEEEE
Confidence 444544 345566666667766666665443
No 85
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=53.39 E-value=22 Score=24.61 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=28.3
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+|+|+.|....|+...+.+++.....|.+++++
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll 33 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLV 33 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEE
Confidence 389999999999999999988877778888765
No 86
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=52.74 E-value=53 Score=24.30 Aligned_cols=36 Identities=19% Similarity=0.119 Sum_probs=27.5
Q ss_pred CCCeEEEEe--cCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 52 KGSVLVVGG--DGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 52 ~~~~vvVG~--D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
..+.|++-| |.+..+......+...|.+.|++.+-+
T Consensus 150 ~~g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~vtl 187 (191)
T TIGR02764 150 KPGDIILLHASDSAKQTVKALPTIIKKLKEKGYEFVTI 187 (191)
T ss_pred CCCCEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEEEH
Confidence 345699999 566666667788899999999996644
No 87
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=52.73 E-value=18 Score=27.89 Aligned_cols=65 Identities=20% Similarity=0.113 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhcc---cCCCCeE-EEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHH
Q psy5981 34 HYTENFIQSILTALGD---KLKGSVL-VVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRK 104 (131)
Q Consensus 34 ~~~~~~~~ai~~~~~~---~~~~~~v-vVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~ 104 (131)
+.+.++++++++.+.+ +..+..| +|--|+=..+..-|...++-|...|+++.+ .-||.-.|-...
T Consensus 25 ~~tm~ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Iggv~eAa~~ae~f~~~~V~~ti------tvtpcWcy~~et 93 (171)
T PF07881_consen 25 EQTMNMAKAVAELLEENLRYPDGSPVECVIADTTIGGVAEAAACAEKFKREGVGVTI------TVTPCWCYGSET 93 (171)
T ss_dssp HHHHHHHHHHHHHHHHH-B-TTS-B--EEE-SS-B-SHHHHHHHHHHHHCCTEEEEE------EEESS---HHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCeeEEEECCCcccCHHHHHHHHHHHHHcCCCEEE------EEEeeeecchhh
Confidence 3456677777776654 2333443 566677788888888999999999999764 457877776543
No 88
>KOG2451|consensus
Probab=52.43 E-value=28 Score=30.61 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=37.1
Q ss_pred cCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceE------EEcCCCCCC
Q psy5981 64 YFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRL------VKVPSSNPS 119 (131)
Q Consensus 64 ~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GI------mITASHNP~ 119 (131)
+-+.++++.+...| +.||.|++-. ---||..+.+.-++ ..+|| |||++||-+
T Consensus 171 FP~AMItRK~gAAL-AaGCTvVvkP---s~~TPlsaLala~lA~~AGiP~Gv~NVit~~~~~a 229 (503)
T KOG2451|consen 171 FPAAMITRKAGAAL-AAGCTVVVKP---SEDTPLSALALAKLAEEAGIPAGVLNVITADASNA 229 (503)
T ss_pred ChHHHHHhHHHHHH-hcCceEEEcc---CCCCchHHHHHHHHHHHcCCCCcceEEEecCCCCh
Confidence 66788888877777 5899998653 35588877777666 34444 799877654
No 89
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=52.33 E-value=33 Score=28.68 Aligned_cols=69 Identities=7% Similarity=0.030 Sum_probs=38.4
Q ss_pred CCCeEEEEe--cCCcCHHHHHHHHHHHHHHCCCcEEEecC-CccccchHHHHHHHHh-cCceEEEcCCCCCCC
Q psy5981 52 KGSVLVVGG--DGRYFGDVAVDKIIKISAANGVAKLIVGQ-NGILSTPAVSALIRKH-ILGRLVKVPSSNPSR 120 (131)
Q Consensus 52 ~~~~vvVG~--D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~-~g~~PTP~vsfav~~~-~~~GImITASHNP~~ 120 (131)
++.+|+|.+ |+...--..++..+..++..|++|+++.. .++.|.+-+-=..+.. ...|.-++=+|||.+
T Consensus 168 ~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~e 240 (335)
T PRK04523 168 RGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDS 240 (335)
T ss_pred CCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHH
Confidence 345676655 65443334455666778889999988754 4545555432112222 233444555677754
No 90
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=52.31 E-value=62 Score=25.01 Aligned_cols=35 Identities=20% Similarity=0.057 Sum_probs=28.8
Q ss_pred CCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 53 GSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 53 ~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
.+.|++-||.+....+....++..|.+.|++.+-+
T Consensus 186 ~g~IiLlHd~~~~t~~aL~~ii~~lk~~Gy~fvtl 220 (224)
T TIGR02884 186 PGAILLLHAVSKDNAEALDKIIKDLKEQGYTFKSL 220 (224)
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEh
Confidence 45699999987777778888999999999997654
No 91
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=51.59 E-value=47 Score=24.31 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=29.2
Q ss_pred EEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcC
Q psy5981 58 VGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVP 114 (131)
Q Consensus 58 VG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITA 114 (131)
|+-|..--+..+ ++..|.++|++|++++. -+|...+-=+++++ ++. |.+|+
T Consensus 9 v~~D~HdiGk~i---v~~~l~~~GfeVi~LG~--~v~~e~~v~aa~~~~adi-VglS~ 60 (134)
T TIGR01501 9 IGSDCHAVGNKI---LDHAFTNAGFNVVNLGV--LSPQEEFIKAAIETKADA-ILVSS 60 (134)
T ss_pred ecCChhhHhHHH---HHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCCCE-EEEec
Confidence 556766666543 56668888888888732 24444444445555 432 44443
No 92
>PRK00536 speE spermidine synthase; Provisional
Probab=50.95 E-value=27 Score=28.37 Aligned_cols=37 Identities=5% Similarity=-0.099 Sum_probs=29.6
Q ss_pred CCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCC
Q psy5981 80 NGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 80 ~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~ 119 (131)
.-+||+++ +..+||..+-.+++. ..+|||+|=|..|.
T Consensus 138 ~~fDVIIv---Ds~~~~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 138 KKYDLIIC---LQEPDIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred CcCCEEEE---cCCCChHHHHHHHHhcCCCcEEEECCCCcc
Confidence 45999988 356888776677777 89999999988775
No 93
>COG3910 Predicted ATPase [General function prediction only]
Probab=50.82 E-value=26 Score=28.09 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=46.7
Q ss_pred cCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHH--h-cCceEEEcCCCCCC
Q psy5981 61 DGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRK--H-ILGRLVKVPSSNPS 119 (131)
Q Consensus 61 D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~--~-~~~GImITASHNP~ 119 (131)
+.+..++.|...+.+-+...|+-+++=...++.|.=.++.+.+- + -.|+=+|-|.|-|-
T Consensus 128 h~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 128 HHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred hhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 45578999999999999999998877666678888888888643 3 45667788999884
No 94
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=50.62 E-value=55 Score=22.79 Aligned_cols=39 Identities=5% Similarity=-0.035 Sum_probs=19.5
Q ss_pred HHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCC
Q psy5981 74 IKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPS 115 (131)
Q Consensus 74 a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITAS 115 (131)
+..|...|++|++++ ..+|...+.=++.+. ++ -|.|+.+
T Consensus 20 ~~~l~~~G~~vi~lG--~~vp~e~~~~~a~~~~~d-~V~iS~~ 59 (122)
T cd02071 20 ARALRDAGFEVIYTG--LRQTPEEIVEAAIQEDVD-VIGLSSL 59 (122)
T ss_pred HHHHHHCCCEEEECC--CCCCHHHHHHHHHHcCCC-EEEEccc
Confidence 334666666666653 235555444444444 32 2445444
No 95
>KOG2882|consensus
Probab=49.27 E-value=26 Score=29.33 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=31.8
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCcccc
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILS 94 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~P 94 (131)
+-||||+|..+|-.++++ ++.-|..-||--+..++|...|
T Consensus 155 gAVvvg~D~hfsy~KL~k-A~~yLqnP~clflatn~D~~~p 194 (306)
T KOG2882|consen 155 GAVVVGYDEHFSYPKLMK-ALNYLQNPGCLFLATNRDATTP 194 (306)
T ss_pred CEEEEecccccCHHHHHH-HHHHhCCCCcEEEeccCccccC
Confidence 349999999999999998 6788988888866555555555
No 96
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=49.25 E-value=1.2e+02 Score=23.47 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=40.4
Q ss_pred CCeEEEE---ecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCC
Q psy5981 53 GSVLVVG---GDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPS 115 (131)
Q Consensus 53 ~~~vvVG---~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITAS 115 (131)
.++|++| .|....+..+ ++..|.++|++|++++. -+|...+-=++.+. .+ -|.++++
T Consensus 88 ~~~vvl~t~~gd~HdiG~~i---v~~~l~~~G~~Vi~LG~--~vp~e~~v~~~~~~~~~-~V~lS~~ 148 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNL---VGVILSNNGYEVIDLGV--MVPIEKILEAAKEHKAD-IIGLSGL 148 (213)
T ss_pred CCeEEEEeCCCchhHHHHHH---HHHHHHhCCCEEEECCC--CCCHHHHHHHHHHcCCC-EEEEccc
Confidence 3567766 5777777655 46669999999999853 47888777777777 44 3666655
No 97
>PF09195 Endonuc-BglII: Restriction endonuclease BglII; InterPro: IPR015278 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents BglII restriction endonucleases, which recognise AGATCT and cleaves after A-1 [, ]. BglII adopts a structure consisting of an alpha/beta core containing a six-stranded beta-sheet surrounded by five alpha-helices, two of which are involved in homodimerisation of the endonuclease.; PDB: 1DFM_B 1D2I_B 1ES8_A 2P0J_B 1VRR_A 1SDO_A.
Probab=48.47 E-value=9.1 Score=28.85 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=11.3
Q ss_pred cCceEEEcCCCCCCC
Q psy5981 106 ILGRLVKVPSSNPSR 120 (131)
Q Consensus 106 ~~~GImITASHNP~~ 120 (131)
.+.||.||++++-..
T Consensus 114 IdvGIiIt~~~~l~~ 128 (164)
T PF09195_consen 114 IDVGIIITPTKSLQK 128 (164)
T ss_dssp -SEEEEEEE-CCCHT
T ss_pred ceEEEEEecCHHHHh
Confidence 588999999998777
No 98
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=47.28 E-value=87 Score=23.71 Aligned_cols=33 Identities=6% Similarity=-0.087 Sum_probs=24.6
Q ss_pred eEEEEecCC-cCHHHHHHHHHHHHHHC-CCcEEEe
Q psy5981 55 VLVVGGDGR-YFGDVAVDKIIKISAAN-GVAKLIV 87 (131)
Q Consensus 55 ~vvVG~D~R-~~s~~~a~~~a~~L~~~-Gi~V~~~ 87 (131)
+|+|-|.++ -+.+.+|+.+++++.+. |++|.++
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~ 36 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVK 36 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 377777776 45677788899998875 8887654
No 99
>PRK08105 flavodoxin; Provisional
Probab=47.26 E-value=84 Score=22.82 Aligned_cols=53 Identities=9% Similarity=-0.131 Sum_probs=35.3
Q ss_pred EEEEecCC-cCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHH-h-cCceEEEcCCC
Q psy5981 56 LVVGGDGR-YFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRK-H-ILGRLVKVPSS 116 (131)
Q Consensus 56 vvVG~D~R-~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~-~-~~~GImITASH 116 (131)
|.|-|-+. -+++.+|+.+++.|...|++|..... .. +.... . .+.=|+||+++
T Consensus 4 i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~----~~----~~~~~~~~~~~vi~~~sT~ 59 (149)
T PRK08105 4 VGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFED----PE----LSDWQPYQDELVLVVTSTT 59 (149)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHhCCCceEEech----hh----CCchhcccCCeEEEEECCC
Confidence 44444444 47889999999999999999876521 11 11112 2 46678999998
No 100
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=46.52 E-value=76 Score=24.78 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEE
Q psy5981 38 NFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKL 85 (131)
Q Consensus 38 ~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~ 85 (131)
..+.++++++.++.+.++|.|-+..-..++..++.+.+.+.+.|++++
T Consensus 120 ~~~~~~~~~~~~~~g~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv 167 (343)
T PF13458_consen 120 QQAAALAEYLAKKLGAKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVV 167 (343)
T ss_dssp HHHHHHHHHHHHTTTTSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecCchhhhHHHHHHHHHHhhcCceec
Confidence 345556665544334456655555577889999999999999999975
No 101
>PRK09004 FMN-binding protein MioC; Provisional
Probab=46.15 E-value=73 Score=23.05 Aligned_cols=43 Identities=7% Similarity=-0.115 Sum_probs=30.5
Q ss_pred cCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh--cCceEEEcCCC
Q psy5981 64 YFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH--ILGRLVKVPSS 116 (131)
Q Consensus 64 ~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~--~~~GImITASH 116 (131)
-+++.+|+.+++.+.+.|++|.++. .. .| ..+ .+.=|++|+++
T Consensus 13 Gnae~~A~~l~~~~~~~g~~~~~~~---~~-~~------~~l~~~~~li~~~sT~ 57 (146)
T PRK09004 13 GGAEYVADHLAEKLEEAGFSTETLH---GP-LL------DDLSASGLWLIVTSTH 57 (146)
T ss_pred hHHHHHHHHHHHHHHHcCCceEEec---cC-CH------HHhccCCeEEEEECCC
Confidence 3788899999999999999887652 21 12 122 46668899888
No 102
>PRK06703 flavodoxin; Provisional
Probab=45.97 E-value=54 Score=23.35 Aligned_cols=32 Identities=9% Similarity=-0.092 Sum_probs=21.2
Q ss_pred EEEEecCC-cCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 56 LVVGGDGR-YFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 56 vvVG~D~R-~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++|-|++. -+++.+|+.+++.|.+.|++|...
T Consensus 4 v~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~ 36 (151)
T PRK06703 4 ILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQ 36 (151)
T ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCceEEE
Confidence 56666665 456667777777777777765543
No 103
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=45.07 E-value=41 Score=23.82 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=5.6
Q ss_pred ccccchHHHHH
Q psy5981 91 GILSTPAVSAL 101 (131)
Q Consensus 91 g~~PTP~vsfa 101 (131)
|..|.++..|.
T Consensus 64 g~~p~~~~~fl 74 (140)
T TIGR01754 64 GRTPDEMKDFI 74 (140)
T ss_pred CcCCHHHHHHH
Confidence 34455555554
No 104
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=44.79 E-value=54 Score=27.49 Aligned_cols=66 Identities=21% Similarity=0.231 Sum_probs=41.1
Q ss_pred CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCCC
Q psy5981 52 KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPSR 120 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~~ 120 (131)
++.+|++-.|.|. + .++..+..++..|++|+++...++.|.+-+--..+.. ...|.-++-+|||.+
T Consensus 154 ~g~~va~vGd~~~-~--v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~e 220 (331)
T PRK02102 154 KGLKLAYVGDGRN-N--MANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEE 220 (331)
T ss_pred CCCEEEEECCCcc-c--HHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHH
Confidence 4456766668863 2 5677777888999999998766777765432122333 223444556777643
No 105
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=44.46 E-value=66 Score=23.22 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=25.3
Q ss_pred CCCeEEEEecCCcCH---H---HHHHHHHHHHHHCCCcEEEe
Q psy5981 52 KGSVLVVGGDGRYFG---D---VAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s---~---~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+.+.|+|.+|.-... . ...+.+++-|...|++|.++
T Consensus 67 ~gr~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~ 108 (130)
T PF12965_consen 67 PGREVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKII 108 (130)
T ss_pred CCceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 346799999987322 2 33455677899999998765
No 106
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=44.34 E-value=49 Score=27.62 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=40.5
Q ss_pred CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCCC
Q psy5981 52 KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPSR 120 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~~ 120 (131)
++.+|++-.|.+. ..++..+..++..|++++++...++.|.+-+--..+.. ...|.-++-+|||.+
T Consensus 154 ~g~kia~vGD~~~---~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~e 220 (332)
T PRK04284 154 KDIKFTYVGDGRN---NVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDE 220 (332)
T ss_pred CCcEEEEecCCCc---chHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHH
Confidence 4456766668753 24566677788889999988666666665432122232 234555666788754
No 107
>KOG2427|consensus
Probab=44.27 E-value=8.5 Score=33.23 Aligned_cols=9 Identities=44% Similarity=1.106 Sum_probs=7.6
Q ss_pred CCCCCCccc
Q psy5981 120 RTIRPCPLL 128 (131)
Q Consensus 120 ~~ng~~~~~ 128 (131)
.-||||||+
T Consensus 33 n~nGpCpLi 41 (391)
T KOG2427|consen 33 NENGPCPLI 41 (391)
T ss_pred cCCCCcchH
Confidence 469999996
No 108
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=43.09 E-value=1.5e+02 Score=23.45 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=35.7
Q ss_pred EEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh--cCceEEEcCCCCCCCCCC
Q psy5981 56 LVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH--ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 56 vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~--~~~GImITASHNP~~~ng 123 (131)
-++-+|++.......+.+-+-+...|+++++ |...+.... ++... ..+=.+|+.+-.+..+.+
T Consensus 40 ~l~~~D~~~~p~~a~~~~~~lv~~~~v~~vi----G~~~s~~~~-a~~~~~~~~~ip~i~~~~~~~~~~~ 104 (333)
T cd06359 40 EVVVEDDGLKPDVAKQAAERLIKRDKVDFVT----GVVFSNVLL-AVVPPVLESGTFYISTNAGPSQLAG 104 (333)
T ss_pred EEEecCCCCChHHHHHHHHHHHhhcCCcEEE----ccCCcHHHH-HHHHHHHHcCCeEEecCCCcccccc
Confidence 3678999976655554443444456999764 544454333 33222 223367776666666655
No 109
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=42.48 E-value=1.4e+02 Score=23.57 Aligned_cols=67 Identities=15% Similarity=0.059 Sum_probs=37.1
Q ss_pred EEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh--cCceEEEcCCCCCCCCCCCCcc
Q psy5981 56 LVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH--ILGRLVKVPSSNPSRTIRPCPL 127 (131)
Q Consensus 56 vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~--~~~GImITASHNP~~~ng~~~~ 127 (131)
.++-+|++.+.....+.+.+-+...++.++ + |...++... ++... ...=.+|+.+...+++..+.++
T Consensus 42 ~l~~~D~~~~~~~a~~~a~~li~~~~V~~i-~---G~~~s~~~~-a~~~~~~~~~vp~i~~~~~~~~~~~~~~~ 110 (340)
T cd06349 42 NIVFEDSKSDPRQAVTIAQKFVADPRIVAV-L---GDFSSGVSM-AASPIYQRAGLVQLSPTNSHPDFTKGGDF 110 (340)
T ss_pred EEEEeCCCCChHHHHHHHHHHhccCCeEEE-E---CCCccHhHH-HhHHHHHhCCCeEEecCCCCCccccCCCe
Confidence 578899998777766555555555667754 3 555555433 33333 2334667655433444333343
No 110
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=42.26 E-value=98 Score=21.02 Aligned_cols=11 Identities=0% Similarity=0.039 Sum_probs=5.8
Q ss_pred HHHCCCcEEEe
Q psy5981 77 SAANGVAKLIV 87 (131)
Q Consensus 77 L~~~Gi~V~~~ 87 (131)
+.+...+++.+
T Consensus 46 ~~~~~pdvV~i 56 (119)
T cd02067 46 AKEEDADAIGL 56 (119)
T ss_pred HHHcCCCEEEE
Confidence 34555665544
No 111
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=41.91 E-value=35 Score=21.79 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHCCCcEEEecCCccccchH
Q psy5981 67 DVAVDKIIKISAANGVAKLIVGQNGILSTPA 97 (131)
Q Consensus 67 ~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~ 97 (131)
..-|..+-+.|.++|+++. ++|||-
T Consensus 11 t~~a~~~ek~lk~~gi~~~------liP~P~ 35 (73)
T PF11823_consen 11 THDAMKAEKLLKKNGIPVR------LIPTPR 35 (73)
T ss_pred HHHHHHHHHHHHHCCCcEE------EeCCCh
Confidence 3344445567899999865 578884
No 112
>PRK06696 uridine kinase; Validated
Probab=41.75 E-value=1.2e+02 Score=23.16 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=29.9
Q ss_pred CCeEEEEecCCcCH--HHHHHHHHHHHHHCCCcEEEecCCcccc
Q psy5981 53 GSVLVVGGDGRYFG--DVAVDKIIKISAANGVAKLIVGQNGILS 94 (131)
Q Consensus 53 ~~~vvVG~D~R~~s--~~~a~~~a~~L~~~Gi~V~~~~~~g~~P 94 (131)
.+..+||-|+...| -.+|+.+++.|...|+.|+.+..+++-.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 34678888888544 3468889999988899887754445443
No 113
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=40.58 E-value=1.6e+02 Score=22.28 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=39.2
Q ss_pred CCeEEEE---ecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCC
Q psy5981 53 GSVLVVG---GDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPS 115 (131)
Q Consensus 53 ~~~vvVG---~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITAS 115 (131)
.++|+++ .|....+..+ ++..|..+|++|++++. -+|...+.=++++. .+ -|.+|+|
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~---v~~~l~~~G~~vi~lG~--~~p~~~l~~~~~~~~~d-~v~lS~~ 142 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNL---VATMLEANGFEVIDLGR--DVPPEEFVEAVKEHKPD-ILGLSAL 142 (201)
T ss_pred CCeEEEEecCCccchHHHHH---HHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCCC-EEEEecc
Confidence 3466654 5777766655 46679999999998842 46777777777777 54 3666664
No 114
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=40.56 E-value=77 Score=19.52 Aligned_cols=28 Identities=14% Similarity=0.219 Sum_probs=24.3
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCC
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANG 81 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~G 81 (131)
..|+|..|.=..++.++..+++.|...|
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~~~~ 75 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLKPAG 75 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhhhhc
Confidence 4699999999999999999988887655
No 115
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=38.87 E-value=1.7e+02 Score=24.28 Aligned_cols=66 Identities=11% Similarity=0.043 Sum_probs=44.0
Q ss_pred eEEEE--ecCC-cCH--HHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHhcCceEEEcCCCCCCCCC
Q psy5981 55 VLVVG--GDGR-YFG--DVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHILGRLVKVPSSNPSRTI 122 (131)
Q Consensus 55 ~vvVG--~D~R-~~s--~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~~~~GImITASHNP~~~n 122 (131)
+|+|. ...+ +.+ +.+++.+-......++.|.+= .+-..++....-..+.--..+||=+||-|.+.|
T Consensus 44 PvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lH--lDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eEN 114 (286)
T COG0191 44 PVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALH--LDHGASFEDCKQAIRAGFSSVMIDGSHLPFEEN 114 (286)
T ss_pred CEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEE--CCCCCCHHHHHHHHhcCCceEEecCCcCCHHHH
Confidence 45554 3333 444 677777778888899998764 356666654444333322469999999998877
No 116
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=38.54 E-value=90 Score=26.45 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=38.0
Q ss_pred CCeEEEEe--cC---CcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCCC
Q psy5981 53 GSVLVVGG--DG---RYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPSR 120 (131)
Q Consensus 53 ~~~vvVG~--D~---R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~~ 120 (131)
+.+|++-+ |. |.+ ..++..+..++..|++|+++...++.|.|-+.--.+++ ...|.-++-.|||.+
T Consensus 170 g~kvai~~~~d~~~gr~~--~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~e 241 (357)
T TIGR03316 170 GKKFAMTWAYSPSYGKPL--SVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDE 241 (357)
T ss_pred CCEEEEEeccccccCccc--hHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHH
Confidence 44666554 53 433 34555566678889999998766666666553222333 233445555677643
No 117
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=38.52 E-value=2.2e+02 Score=23.20 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=34.8
Q ss_pred EEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh--cCceEEEc
Q psy5981 56 LVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH--ILGRLVKV 113 (131)
Q Consensus 56 vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~--~~~GImIT 113 (131)
.++|+..=+.++.-.+++++-+.++|-|+++++- | +|-- --|..++. ...+|+|+
T Consensus 136 ~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~Vgm-G-~P~Q-E~wi~~~~~~~~~~v~ig 192 (253)
T COG1922 136 KIVGSHDGYFDPEEEEAIVERIAASGPDILLVGM-G-VPRQ-EIWIARNRQQLPVAVAIG 192 (253)
T ss_pred eEEEecCCCCChhhHHHHHHHHHhcCCCEEEEeC-C-Cchh-HHHHHHhHHhcCCceEEe
Confidence 4555443444444448899999999999999831 2 4443 34555444 56677775
No 118
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=38.42 E-value=85 Score=25.83 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=38.3
Q ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchH-HHHHHHHhcCceEEEcCCCCCCC
Q psy5981 51 LKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPA-VSALIRKHILGRLVKVPSSNPSR 120 (131)
Q Consensus 51 ~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~-vsfav~~~~~~GImITASHNP~~ 120 (131)
.++.+|++-.|.+++ ..++..+..++..|++|.++...++.+.+- +..+ + ..|.-|+-+|||.+
T Consensus 148 l~g~~va~vGD~~~~--~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~-~---~~G~~v~~~~d~~~ 212 (301)
T TIGR00670 148 LDGLKIALVGDLKYG--RTVHSLAEALTRFGVEVYLISPEELRMPKEILEEL-K---AKGIKVRETESLEE 212 (301)
T ss_pred CCCCEEEEEccCCCC--cHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHH-H---HcCCEEEEECCHHH
Confidence 345577777798755 234556677888999999887666633332 2222 1 12445666677653
No 119
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=37.83 E-value=1.9e+02 Score=22.43 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=31.2
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 40 IQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 40 ~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+.+++.++.+..+.++|.+-++.-..+...++.+.+.+.+.|++|...
T Consensus 122 ~~~~~~~~~~~~~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~ 169 (334)
T cd06342 122 GPAAAKYAVETLKAKKVAIIDDKTAYGQGLADEFKKALKAAGGKVVAR 169 (334)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCcchhhHHHHHHHHHHHHcCCEEEEE
Confidence 444455443333334565555555778888888888899899998754
No 120
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=37.80 E-value=1.3e+02 Score=25.98 Aligned_cols=43 Identities=12% Similarity=0.148 Sum_probs=24.9
Q ss_pred CCcEEEecCCccc-cch----HHHHHHHHh--cCceEEEcCCCCCCCCCC
Q psy5981 81 GVAKLIVGQNGIL-STP----AVSALIRKH--ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 81 Gi~V~~~~~~g~~-PTP----~vsfav~~~--~~~GImITASHNP~~~ng 123 (131)
.++++++++.... ..+ .+......+ ...-+++|+.|+|.++++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~ 243 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHH
Confidence 5888888543322 111 222233333 234599999999988765
No 121
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=36.59 E-value=81 Score=25.12 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=30.7
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+.|++++|+=.-++.++.-+.+.|...|++|..+
T Consensus 155 ~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv 188 (218)
T TIGR00646 155 EKIFICFDNDFAGKNAAANLEEILKKAGFITKVI 188 (218)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 5799999999999999999999999999997554
No 122
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=35.90 E-value=1.1e+02 Score=19.05 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=29.2
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEE
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLI 86 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~ 86 (131)
+.|+|..|+=..+...++.+.+.+.+.|+.+.+
T Consensus 44 ~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~~i 76 (79)
T cd01029 44 RTVILAFDNDEAGKKAAARALELLLALGGRVRV 76 (79)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 579999999999999999999999998888654
No 123
>PRK04017 hypothetical protein; Provisional
Probab=35.11 E-value=87 Score=23.02 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=29.8
Q ss_pred CCeEEEEecCCcCHHHHHHHHHHHHHHCCCcE
Q psy5981 53 GSVLVVGGDGRYFGDVAVDKIIKISAANGVAK 84 (131)
Q Consensus 53 ~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V 84 (131)
.+.|+|--|.=..++.+++.+.+.|...|++|
T Consensus 65 ~r~VIILTD~D~~GekIr~~l~~~l~~~G~~v 96 (132)
T PRK04017 65 GKEVIILTDFDRKGEELAKKLSEYLQGYGIKV 96 (132)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhCCCCc
Confidence 45799999999999999999999999999996
No 124
>PF04069 OpuAC: Substrate binding domain of ABC-type glycine betaine transport system; InterPro: IPR007210 This domain is a part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. It is often found in integral membrane proteins or proteins predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis []. OpuBC is closely related and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine []. L-carnitine is important for osmoregulation in Listeria monocytogenes. This domain is found also in proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).; GO: 0005215 transporter activity, 0005488 binding, 0006810 transport; PDB: 3R6U_A 3TMG_C 3MAM_A 1SW5_C 1SW4_B 1SW1_A 1SW2_A 3O66_A 1R9Q_A 1R9L_A ....
Probab=34.19 E-value=1.5e+02 Score=22.92 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=19.8
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+|+||.-.-..+...++.++..|...|+.|...
T Consensus 2 ~I~ig~~~w~~~~~~a~i~~~~Le~~G~~v~~~ 34 (257)
T PF04069_consen 2 PIVIGSKNWTESQILAEIYAQLLEAAGYVVEVV 34 (257)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred eEEEecCCCcHHHHHHHHHHHHHHHCCCeEEEe
Confidence 355665555556666666666666666655444
No 125
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=33.21 E-value=1.4e+02 Score=23.87 Aligned_cols=48 Identities=13% Similarity=0.047 Sum_probs=31.7
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 40 IQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 40 ~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++++++++.+..+.++|.+-++.-..++..+..+.+.|...|++|...
T Consensus 125 ~~~~a~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~ 172 (347)
T cd06335 125 APFLVDEAVKRGGFKKVALLLDNTGWGRSNRKDLTAALAARGLKPVAV 172 (347)
T ss_pred HHHHHHHHHHhcCCCeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEE
Confidence 344555443333345676666656678888888888899999997643
No 126
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=32.56 E-value=65 Score=24.49 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=29.5
Q ss_pred CCCCeEEEEecCCcCHHHHHH-HHHHHHHHCCCcEEEecCCccccchHHHHHHHHh
Q psy5981 51 LKGSVLVVGGDGRYFGDVAVD-KIIKISAANGVAKLIVGQNGILSTPAVSALIRKH 105 (131)
Q Consensus 51 ~~~~~vvVG~D~R~~s~~~a~-~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~ 105 (131)
++-+.|+||+|-|+.-..--. ...+-+...|++++.+...+.--.++=|=++|+.
T Consensus 106 l~~~~ivvG~df~FG~~~~G~~~~L~~~~~~g~~v~~I~r~~~~g~~iSST~IR~~ 161 (182)
T smart00764 106 LGITHRYVGEEPFSPVTAIYNQTMKQTLLSPAIEVVEIERKKANGQPISASTVRKL 161 (182)
T ss_pred cCceEEEEcCCCCCCCCCccCHHHHHHHhhCCCEEEEEecccCCCcEECHHHHHHH
Confidence 345679999999976422111 1112234779998876543332233333345554
No 127
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=32.49 E-value=1.1e+02 Score=25.69 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=38.3
Q ss_pred CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCC
Q psy5981 52 KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~ 119 (131)
++.+|.+-.|.+.+ .++..+..++..|+++.++...++.|.+-+---+..+ ...|.-++-+|||.
T Consensus 155 ~gl~va~vGD~~~~---v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ 220 (334)
T PRK12562 155 NEMTLVYAGDARNN---MGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIA 220 (334)
T ss_pred CCcEEEEECCCCCC---HHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHH
Confidence 34566655687532 4566666778889999988766666665332112222 22344466667764
No 128
>PRK10116 universal stress protein UspC; Provisional
Probab=32.37 E-value=1.3e+02 Score=20.56 Aligned_cols=32 Identities=9% Similarity=-0.041 Sum_probs=15.7
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEE
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLI 86 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~ 86 (131)
+|+|+.|....++...+.+++-....|.++.+
T Consensus 5 ~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~l 36 (142)
T PRK10116 5 NILVAVAVTPESQQLLAKAVSIARPVNGKISL 36 (142)
T ss_pred eEEEEccCCcchHHHHHHHHHHHHHhCCEEEE
Confidence 35555555555555444444443344544443
No 129
>PF10178 DUF2372: Uncharacterised conserved protein (DUF2372); InterPro: IPR018788 Proteasome assembly chaperone 3 (PSMG3) promotes assembly of the 20S proteasome []. It may cooperate with PSMG1-PSMG2 heterodimers to orchestrate the correct assembly of proteasomes.; PDB: 2Z5E_A.
Probab=32.19 E-value=1.7e+02 Score=19.99 Aligned_cols=48 Identities=8% Similarity=0.143 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHC
Q psy5981 33 EHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAAN 80 (131)
Q Consensus 33 ~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~ 80 (131)
+..+..+++.+.+.+.+....+.++++-=-...|.+..+++.+.+.++
T Consensus 41 ep~l~v~Ar~L~~~i~~~~~~r~lllalgLkd~s~e~lk~i~~~i~~~ 88 (90)
T PF10178_consen 41 EPLLHVYARQLIEFISQEGSNRPLLLALGLKDHSPETLKAIVEVIREN 88 (90)
T ss_dssp -HHHHHHHHHHHHHHHHHTTT-EEEEEEE-SS--HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhccCCCCcEEEEEeccCCCHHHHHHHHHHHHHh
Confidence 445666778787777543345678888878888899989999888765
No 130
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=32.08 E-value=1.2e+02 Score=20.76 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=3.5
Q ss_pred HHHCCCcE
Q psy5981 77 SAANGVAK 84 (131)
Q Consensus 77 L~~~Gi~V 84 (131)
|...|++-
T Consensus 51 l~~~G~~~ 58 (103)
T cd03413 51 LKKAGIKK 58 (103)
T ss_pred HHHcCCCE
Confidence 34445543
No 131
>cd03556 L-fucose_isomerase L-fucose isomerase (FucIase); FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose during glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in blood group determinants as well as in various oligo- and polysaccharides, and glycosides in mammals, bacteria and plants.
Probab=31.69 E-value=1.6e+02 Score=26.86 Aligned_cols=60 Identities=15% Similarity=0.023 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcc---cCCCCe-EEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHH
Q psy5981 36 TENFIQSILTALGD---KLKGSV-LVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSAL 101 (131)
Q Consensus 36 ~~~~~~ai~~~~~~---~~~~~~-vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfa 101 (131)
+.+++++.++.+.+ +..+.. -+|--|+-..+..-+..+++-|...|+++.++ -||.-.|.
T Consensus 24 tm~mak~~a~~i~~~L~~~~G~~ve~viad~~i~~~aeA~~~a~kf~~~~Vd~tI~------vtpcWcyg 87 (584)
T cd03556 24 TMNMAKAAAKLIEENLKYADGEPVECVIADTTIGRVAEAAACAEKFTRENVGATIT------VTPCWCYG 87 (584)
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEecccccCCHHHHHHHHHHHhhcCCCEEEE------ecceecCc
Confidence 34555555555543 222232 35566777788888888899999999998764 35555555
No 132
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=31.63 E-value=1.4e+02 Score=22.53 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=35.6
Q ss_pred CcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHH-HHHHHHh--cCceEEEcCCCCC
Q psy5981 63 RYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAV-SALIRKH--ILGRLVKVPSSNP 118 (131)
Q Consensus 63 R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~v-sfav~~~--~~~GImITASHNP 118 (131)
|.++.++...+.+.....|..|+++ | .||.+ .-+...+ .-.|+.|.++|-+
T Consensus 30 Rv~G~dl~~~l~~~~~~~~~~vfll---G--~~~~v~~~~~~~l~~~yP~l~i~g~~g~ 83 (177)
T TIGR00696 30 RVAGPDLMEELCQRAGKEKLPIFLY---G--GKPDVLQQLKVKLIKEYPKLKIVGAFGP 83 (177)
T ss_pred ccChHHHHHHHHHHHHHcCCeEEEE---C--CCHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 7788999999988888999998887 3 45544 3344444 2367877776443
No 133
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=31.58 E-value=2.3e+02 Score=21.54 Aligned_cols=62 Identities=18% Similarity=0.074 Sum_probs=40.4
Q ss_pred cCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 61 DGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 61 D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
|...+...+.+++-.. ...|++|+...-....+.+.+.-++.+. ..+-++|.|+-|-...+.
T Consensus 101 ~~~~~~~~~~~a~~~a-~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~ 163 (259)
T cd07473 101 DGSGTTSDAIKAIDYA-VDMGAKIINNSWGGGGPSQALRDAIARAIDAGILFVAAAGNDGTNND 163 (259)
T ss_pred CCCcCHHHHHHHHHHH-HHCCCeEEEeCCCCCCCCHHHHHHHHHHHhCCCEEEEeCCCCCCCCC
Confidence 3335555666555444 4599999877532234566666677777 667899999999766543
No 134
>PRK09982 universal stress protein UspD; Provisional
Probab=31.54 E-value=1.3e+02 Score=20.89 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=25.0
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++|+|+-|.-..|+...+.+.+.....|.+++++
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~ll 37 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARHNDAHLTLI 37 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEE
Confidence 3588888888778777777777666677776655
No 135
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=31.11 E-value=2.6e+02 Score=22.14 Aligned_cols=36 Identities=8% Similarity=0.024 Sum_probs=27.9
Q ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEE
Q psy5981 51 LKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLI 86 (131)
Q Consensus 51 ~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~ 86 (131)
.+.++|.+-+|.-..+..+...+.+.+...|++|..
T Consensus 142 ~~~~~va~l~~~~~~g~~~~~~~~~~~~~~G~~vv~ 177 (344)
T cd06345 142 HGFKTAAIVAEDAAWGKGIDAGIKALLPEAGLEVVS 177 (344)
T ss_pred CCCceEEEEecCchhhhHHHHHHHHHHHHcCCeEEE
Confidence 344667777777778888888888889888988765
No 136
>PHA02031 putative DnaG-like primase
Probab=30.89 E-value=1e+02 Score=25.29 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=30.2
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+.|++.+|+=.-+...+..+.+.|...|++|.++
T Consensus 207 ~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv 240 (266)
T PHA02031 207 PRVLIFLDGDPAGVDGSAGAMRRLRPLLIEGQVI 240 (266)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHHHHcCCceEEE
Confidence 4699999999999999999999999999987654
No 137
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=30.83 E-value=1.2e+02 Score=25.48 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=30.4
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHH
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVS 99 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vs 99 (131)
++++|-.|.....-.+.+.+.+.|...|+++..+ +|..|-|.+.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f--~~v~~np~~~ 75 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIY--DGTQPNPTTE 75 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEe--CCCCCCcCHH
Confidence 4676667764433335556888899999998777 4788777665
No 138
>PRK07308 flavodoxin; Validated
Probab=30.65 E-value=1.3e+02 Score=21.22 Aligned_cols=30 Identities=7% Similarity=-0.226 Sum_probs=17.3
Q ss_pred EEEEecCC-cCHHHHHHHHHHHHHHCCCcEE
Q psy5981 56 LVVGGDGR-YFGDVAVDKIIKISAANGVAKL 85 (131)
Q Consensus 56 vvVG~D~R-~~s~~~a~~~a~~L~~~Gi~V~ 85 (131)
+.|-|+++ -+.+.+|+.+++.|...|++|.
T Consensus 4 ~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~ 34 (146)
T PRK07308 4 AKIVYASMTGNTEEIADIVADKLRELGHDVD 34 (146)
T ss_pred EEEEEECCCchHHHHHHHHHHHHHhCCCceE
Confidence 44455555 3455566666666666666543
No 139
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=30.62 E-value=2.8e+02 Score=22.08 Aligned_cols=65 Identities=22% Similarity=0.206 Sum_probs=36.5
Q ss_pred EEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 56 LVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 56 vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
-++-+|.+...+...+.+.+-+...++..++ |...++...-+.... ...=.+|+.+=.+.++.+|
T Consensus 49 ~l~~~D~~~~~~~a~~~a~~li~~~~v~avv----G~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~ 114 (362)
T cd06343 49 ELIVEDDGYSPPKTVEQTRKLVESDEVFAMV----GGLGTPTNLAVQKYLNEKKVPQLFPASGASKWNDP 114 (362)
T ss_pred EEEEecCCCChHHHHHHHHHHHhhcCeEEEE----ecCCcHHHHHhHHHHHhcCCceEecccccHhhhCC
Confidence 3677899977666655555555557877654 566666544333222 2333456644344455554
No 140
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=30.22 E-value=1.7e+02 Score=21.13 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=37.9
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHhcCceEEEcCCCCCCCCCCCCccccc
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHILGRLVKVPSSNPSRTIRPCPLLIT 130 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~~~~GImITASHNP~~~ng~~~~~~~ 130 (131)
+.|++=-|+..+...-....++.|...|++++.+ |+-+-.-.. ..+..+... ..+++|++.+.
T Consensus 110 ~~villTDG~~~~~~~~~~~a~~l~~~gv~v~~i---giG~~~d~~-~l~~ia~~~----------~~~~~~~~~~~ 172 (186)
T cd01471 110 QLVIIMTDGIPDSKFRTLKEARKLRERGVIIAVL---GVGQGVNHE-ENRSLVGCD----------PDDSPCPLYLQ 172 (186)
T ss_pred eEEEEEccCCCCCCcchhHHHHHHHHCCCEEEEE---EeehhhCHH-HHHHhcCCC----------CCCCCCCeeec
Confidence 3577889998765544445677889999998877 444321111 123332211 66788887654
No 141
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=29.98 E-value=3.1e+02 Score=22.41 Aligned_cols=77 Identities=10% Similarity=-0.012 Sum_probs=46.3
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccch--HHHHHHHHh-c-CceEEEcCC
Q psy5981 40 IQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTP--AVSALIRKH-I-LGRLVKVPS 115 (131)
Q Consensus 40 ~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP--~vsfav~~~-~-~~GImITAS 115 (131)
+..++.++.+....+++++=+|.-..++.+++.+-+.|.+.|.+++.. ..+.|.. .-+...+-. . ...|.++..
T Consensus 135 ~~~~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~~--~~~~~~~~~~~~~v~~i~~~~~d~v~~~~~ 212 (366)
T COG0683 135 AAAAADYLVKKGGKKRVAIIGDDYAYGEGLADAFKAALKALGGEVVVE--EVYAPGDTDFSALVAKIKAAGPDAVLVGGY 212 (366)
T ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCcchhHHHHHHHHHHhCCCeEEEE--EeeCCCCCChHHHHHHHHhcCCCEEEECCC
Confidence 444555554433335788888888899999999999999999984431 1344443 222222222 2 224666665
Q ss_pred CCC
Q psy5981 116 SNP 118 (131)
Q Consensus 116 HNP 118 (131)
|.+
T Consensus 213 ~~~ 215 (366)
T COG0683 213 GPD 215 (366)
T ss_pred Ccc
Confidence 543
No 142
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=29.28 E-value=1.4e+02 Score=19.30 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=19.1
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEec
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVG 88 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~ 88 (131)
.|+|-+--=..+..+. .+++-|+++|+.|+-++
T Consensus 18 ~v~i~HG~~eh~~ry~-~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 18 VVVIVHGFGEHSGRYA-HLAEFLAEQGYAVFAYD 50 (79)
T ss_pred EEEEeCCcHHHHHHHH-HHHHHHHhCCCEEEEEC
Confidence 3555555555555543 34566677777766554
No 143
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=27.98 E-value=2.5e+02 Score=20.67 Aligned_cols=76 Identities=18% Similarity=0.127 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcccC---CCCe-EEEEecCCcCHHHHHHHHHHHHHHCCCcEEEec-CCccccchHHHHHHHHh-cCc
Q psy5981 35 YTENFIQSILTALGDKL---KGSV-LVVGGDGRYFGDVAVDKIIKISAANGVAKLIVG-QNGILSTPAVSALIRKH-ILG 108 (131)
Q Consensus 35 ~~~~~~~ai~~~~~~~~---~~~~-vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~-~~g~~PTP~vsfav~~~-~~~ 108 (131)
+.++.++++++.+.+.. ..++ +++...+...++-++ +|+-|...|++|.++. ...-..++...+..... ..+
T Consensus 4 LME~Ag~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~--~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g 81 (169)
T PF03853_consen 4 LMENAGRAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLV--AARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMG 81 (169)
T ss_dssp HHHHHHHHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHH--HHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcccCCCeEEEEECCCCChHHHHH--HHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcC
Confidence 44555666666554322 2333 455666777777665 7888999999997631 11235567777766666 344
Q ss_pred eEEE
Q psy5981 109 RLVK 112 (131)
Q Consensus 109 GImI 112 (131)
+..+
T Consensus 82 ~~~~ 85 (169)
T PF03853_consen 82 IKII 85 (169)
T ss_dssp -EEE
T ss_pred CcEe
Confidence 3333
No 144
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=27.63 E-value=1.8e+02 Score=26.28 Aligned_cols=55 Identities=7% Similarity=-0.080 Sum_probs=38.9
Q ss_pred CeEEEEecCC-cCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh--cCceEEEcCCC
Q psy5981 54 SVLVVGGDGR-YFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH--ILGRLVKVPSS 116 (131)
Q Consensus 54 ~~vvVG~D~R-~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~--~~~GImITASH 116 (131)
++|.|-|-+- -+++.+|+.+++.+.+.|++|.++. +-.|....+ .+.=|+||++|
T Consensus 62 ~~v~IlygSqTGnae~lA~~la~~l~~~g~~~~v~~--------~~d~~~~~L~~~~~vl~v~ST~ 119 (600)
T PRK10953 62 PGITLISASQTGNARRVAEQLRDDLLAAKLNVNLVN--------AGDYKFKQIAQEKLLIVVTSTQ 119 (600)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHhCCCCcEEec--------hHhCCHhHhccCCeEEEEECCC
Confidence 3566666665 4788899999999999999986552 122233343 45679999999
No 145
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=27.48 E-value=2.5e+02 Score=24.29 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=27.5
Q ss_pred CCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCC
Q psy5981 80 NGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNP 118 (131)
Q Consensus 80 ~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP 118 (131)
..+|+++++.-| .|.|-+--|++.. -.|=+-|||.---
T Consensus 120 ~~fd~IDiDPFG-SPaPFlDaA~~s~~~~G~l~vTATD~a 158 (380)
T COG1867 120 RAFDVIDIDPFG-SPAPFLDAALRSVRRGGLLCVTATDTA 158 (380)
T ss_pred CCccEEecCCCC-CCchHHHHHHHHhhcCCEEEEEecccc
Confidence 688999986555 7888888777766 4344668987543
No 146
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=27.40 E-value=57 Score=27.62 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=28.2
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEE
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKL 85 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~ 85 (131)
++|||+.|.-.+++.+++-..+-|.++|++|.
T Consensus 68 ~rVVi~~D~d~~G~~~~~~~~~~L~~aGi~V~ 99 (360)
T PRK14719 68 SEVILLTDFDRAGRVYAKNIMEEFQSRGIKVN 99 (360)
T ss_pred CEEEEEECCCCCCCccchHHHHHHHHCCCEEE
Confidence 57999998888888888888999999999984
No 147
>PLN02527 aspartate carbamoyltransferase
Probab=27.35 E-value=3.2e+02 Score=22.48 Aligned_cols=64 Identities=16% Similarity=0.048 Sum_probs=35.6
Q ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHHHHC-CCcEEEecCCccccchHHHHHHHHhcCceEEEcCCCCCC
Q psy5981 51 LKGSVLVVGGDGRYFGDVAVDKIIKISAAN-GVAKLIVGQNGILSTPAVSALIRKHILGRLVKVPSSNPS 119 (131)
Q Consensus 51 ~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~-Gi~V~~~~~~g~~PTP~vsfav~~~~~~GImITASHNP~ 119 (131)
.++.+|++-.|.+.+ .-++..+..|+.. |+++.++...++-|.+.+--.++ ..|.-++-+|||.
T Consensus 149 l~g~kva~vGD~~~~--rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~---~~g~~~~~~~d~~ 213 (306)
T PLN02527 149 LDGIKVGLVGDLANG--RTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLT---SKGVEWEESSDLM 213 (306)
T ss_pred cCCCEEEEECCCCCC--hhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHH---HcCCEEEEEcCHH
Confidence 344577777788643 2244455556665 99998876556655543321111 2344555556664
No 148
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=27.08 E-value=1.8e+02 Score=23.31 Aligned_cols=47 Identities=9% Similarity=0.008 Sum_probs=33.1
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 40 IQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 40 ~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+.++++++.+. +.++|.|-+|.-..+...++.+.+.+.+.|.+++..
T Consensus 112 ~~~~~~~~~~~-g~k~vaii~~~~~~g~~~~~~f~~~~~~~G~~vv~~ 158 (336)
T cd06339 112 ARRAAEYARSQ-GKRRPLVLAPDGAYGQRVADAFRQAWQQLGGTVVAI 158 (336)
T ss_pred HHHHHHHHHhc-CccceEEEecCChHHHHHHHHHHHHHHHcCCceeee
Confidence 34455555432 345676666766778999999999999999998643
No 149
>PF14630 ORC5_C: Origin recognition complex (ORC) subunit 5 C-terminus
Probab=26.88 E-value=16 Score=29.14 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=18.3
Q ss_pred ccchHHHHHHHHh-cCceEEEcCCCCCCCCC
Q psy5981 93 LSTPAVSALIRKH-ILGRLVKVPSSNPSRTI 122 (131)
Q Consensus 93 ~PTP~vsfav~~~-~~~GImITASHNP~~~n 122 (131)
.+..-+.|..+.+ ..+ ==|||||+.++
T Consensus 129 ~~~~~Lp~~sK~LLIAA---YLAS~Np~~~D 156 (271)
T PF14630_consen 129 SQSFELPYYSKYLLIAA---YLASYNPPRTD 156 (271)
T ss_pred cccccCcHHHHHHHHHH---HHHhcCChhHH
Confidence 4566777777777 222 24899999865
No 150
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.61 E-value=2.4e+02 Score=22.19 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=30.4
Q ss_pred HHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEE
Q psy5981 41 QSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLI 86 (131)
Q Consensus 41 ~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~ 86 (131)
.++++++.+..+.++|.+-++.-..+..++..+.+.+.+.|.++..
T Consensus 123 ~~~~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~ 168 (340)
T cd06349 123 PLLADYAVKDLGFKKVAILSVNTDWGRTSADIFVKAAEKLGGQVVA 168 (340)
T ss_pred HHHHHHHHHHcCCcEEEEEecCChHhHHHHHHHHHHHHHcCCEEEE
Confidence 3455554332333556555555567888888888999999999864
No 151
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=26.54 E-value=1.9e+02 Score=24.34 Aligned_cols=65 Identities=20% Similarity=0.249 Sum_probs=45.8
Q ss_pred CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCCC
Q psy5981 52 KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPSR 120 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~~ 120 (131)
++.+++--.|. --.++.+..+.+-.|.++.+....|+-|.|.+-=..++. ...|--|+=+|||.+
T Consensus 152 ~g~k~a~vGDg----NNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~e 217 (310)
T COG0078 152 KGLKLAYVGDG----NNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEE 217 (310)
T ss_pred cCcEEEEEcCc----chHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHH
Confidence 44567666677 345566677778899999999888999999776556665 333555666688763
No 152
>COG4110 Uncharacterized protein involved in stress response [General function prediction only]
Probab=26.45 E-value=63 Score=25.06 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=33.9
Q ss_pred cCCCCCCCcCCccccCCcc--cchHHHHHHHHHHHHHhcccCCCCeEEEEecCCc
Q psy5981 12 VFDGQKPGTSGLRKPTKTF--QQEHYTENFIQSILTALGDKLKGSVLVVGGDGRY 64 (131)
Q Consensus 12 ~~~~~~FGT~GiRg~~g~~--~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~ 64 (131)
||.++ ||.+|+-=-.|.+ +++ .-..+.||+++.++++...+-|-+-+|-|.
T Consensus 40 f~~gi-F~~~giDLDLG~~~~LnD-GskGviQALGN~FGSy~~~Pyi~LdgDDRt 92 (200)
T COG4110 40 FFAGI-FGSKGIDLDLGAFVELND-GSKGVIQALGNAFGSYRDEPYVQLDGDDRT 92 (200)
T ss_pred hhhhh-hccCccccccceEEEecC-CchHHHHHHhhhhcccccCceEEecCCcCC
Confidence 45444 7877665555543 221 245688999999987655667888899884
No 153
>PF14267 DUF4357: Domain of unknown function (DUF4357)
Probab=26.45 E-value=39 Score=21.03 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=25.7
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcE
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAK 84 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V 84 (131)
...+.-.|..++|++.|..++.+=..+|-..
T Consensus 15 ~~~~f~~d~~F~SPS~AA~~v~G~s~NG~~~ 45 (55)
T PF14267_consen 15 GRLVFTQDYLFSSPSAAAAVVLGRSANGWTE 45 (55)
T ss_pred CcEEEecCeEcCChHHHHHHHcCCCCCCcHh
Confidence 4578899999999999988888777777653
No 154
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=26.44 E-value=1.8e+02 Score=19.22 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHhcCceEEEcCCCCCC
Q psy5981 67 DVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHILGRLVKVPSSNPS 119 (131)
Q Consensus 67 ~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~~~~GImITASHNP~ 119 (131)
++..+...+-+...|+++..+. +--|.-.+.-++.+. ....+|.++|...
T Consensus 48 ~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~I~~~~~~~-~~dllviG~~~~~ 97 (124)
T cd01987 48 RRRLAEALRLAEELGAEVVTLP--GDDVAEAIVEFAREH-NVTQIVVGKSRRS 97 (124)
T ss_pred HHHHHHHHHHHHHcCCEEEEEe--CCcHHHHHHHHHHHc-CCCEEEeCCCCCc
Confidence 3334445566777888876552 333445555555555 3346677777654
No 155
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=26.25 E-value=1.6e+02 Score=18.79 Aligned_cols=6 Identities=67% Similarity=1.973 Sum_probs=3.5
Q ss_pred CCcccc
Q psy5981 124 PCPLLI 129 (131)
Q Consensus 124 ~~~~~~ 129 (131)
+||+|+
T Consensus 124 ~~pvli 129 (130)
T cd00293 124 PCPVLV 129 (130)
T ss_pred CCCEEe
Confidence 466654
No 156
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=26.12 E-value=1.2e+02 Score=22.68 Aligned_cols=24 Identities=8% Similarity=-0.198 Sum_probs=10.0
Q ss_pred EEEEecCCcC-HHHHHHHHHHHHHH
Q psy5981 56 LVVGGDGRYF-GDVAVDKIIKISAA 79 (131)
Q Consensus 56 vvVG~D~R~~-s~~~a~~~a~~L~~ 79 (131)
++|-|++++. .+.+|+.+++.|.+
T Consensus 3 ilIvY~S~~G~T~~iA~~Ia~~l~~ 27 (177)
T PRK11104 3 TLILYSSRDGQTRKIASYIASELKE 27 (177)
T ss_pred EEEEEECCCChHHHHHHHHHHHhCC
Confidence 3444444422 23334444444443
No 157
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=26.09 E-value=1.4e+02 Score=23.19 Aligned_cols=59 Identities=24% Similarity=0.159 Sum_probs=34.7
Q ss_pred EEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCC
Q psy5981 56 LVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNP 118 (131)
Q Consensus 56 vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP 118 (131)
-++-+|++.......+.+-+-+...++++++ |...++...-+.... ..+-.+|+++.+.
T Consensus 44 ~l~~~D~~~~~~~a~~~~~~l~~~~~v~~vv----g~~~s~~~~~~~~~~~~~~ip~i~~~~~~ 103 (343)
T PF13458_consen 44 ELVVYDDGGDPAQAVQAARKLIDDDGVDAVV----GPLSSAQAEAVAPIAEEAGIPYISPSASS 103 (343)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHTSTESEEE----ESSSHHHHHHHHHHHHHHT-EEEESSGGG
T ss_pred eeeeccCCCChHHHHHHHHHhhhhcCcEEEE----ecCCcHHHHHHHHHHHhcCcEEEEeeccC
Confidence 3788999977776665555555559999775 556666554444333 3345667766444
No 158
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=26.05 E-value=2.3e+02 Score=23.16 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=28.5
Q ss_pred CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHH
Q psy5981 52 KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAV 98 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~v 98 (131)
++.+|.+-.|... .++..+..|+..|++|.++...++.|.+.+
T Consensus 147 ~g~~v~~vGd~~~----v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~ 189 (304)
T TIGR00658 147 KGVKVVYVGDGNN----VCNSLMLAGAKLGMDVVVATPEGYEPDADI 189 (304)
T ss_pred CCcEEEEEeCCCc----hHHHHHHHHHHcCCEEEEECCchhcCCHHH
Confidence 3445654456422 456667778889999998876677776543
No 159
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=25.95 E-value=1.8e+02 Score=24.43 Aligned_cols=66 Identities=14% Similarity=0.150 Sum_probs=37.1
Q ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCCC
Q psy5981 51 LKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPSR 120 (131)
Q Consensus 51 ~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~~ 120 (131)
.++.+|++-.|.. ..++..+..++..|++|+++...++.|-+-+--..++. ...|.-++-+||+.+
T Consensus 152 l~glkv~~vGD~~----~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~e 218 (338)
T PRK02255 152 LEDCKVVFVGDAT----QVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDE 218 (338)
T ss_pred CCCCEEEEECCCc----hHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHH
Confidence 3445676666753 25566677788899999988665654543332112232 222433444577754
No 160
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=25.86 E-value=2.6e+02 Score=22.07 Aligned_cols=34 Identities=9% Similarity=-0.037 Sum_probs=23.6
Q ss_pred CCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEE
Q psy5981 53 GSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLI 86 (131)
Q Consensus 53 ~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~ 86 (131)
.++|.+-+|....++...+.+.+.|...|++|..
T Consensus 132 ~~~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~ 165 (333)
T cd06358 132 ARRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVG 165 (333)
T ss_pred CCeEEEEeccchhhHHHHHHHHHHHHHcCCEEee
Confidence 3556555655556777777777788888888753
No 161
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=25.71 E-value=1.3e+02 Score=25.71 Aligned_cols=52 Identities=8% Similarity=0.047 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-c------------CceEEEcCCCCCCCCC
Q psy5981 69 AVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-I------------LGRLVKVPSSNPSRTI 122 (131)
Q Consensus 69 ~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~------------~~GImITASHNP~~~n 122 (131)
++..+........+.|.+= .+-..++.+.+..+.. + ...|||=|||.|-+.|
T Consensus 80 ~~~~v~~~A~~~~VPValH--LDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeN 144 (350)
T PRK09197 80 GAKHVHEVAEHYGVPVILH--TDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEEN 144 (350)
T ss_pred HHHHHHHHHHHCCCCEEEE--CCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHH
Confidence 4455555566777887654 3566665333333222 1 4569999999998876
No 162
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=25.64 E-value=1.1e+02 Score=24.48 Aligned_cols=11 Identities=9% Similarity=0.223 Sum_probs=5.4
Q ss_pred HHHHHHHC-CCc
Q psy5981 73 IIKISAAN-GVA 83 (131)
Q Consensus 73 ~a~~L~~~-Gi~ 83 (131)
+.+.+.+. ++.
T Consensus 67 ~v~~i~~~~~~p 78 (257)
T cd00739 67 VLEALRGELDVL 78 (257)
T ss_pred HHHHHHhcCCCc
Confidence 34555554 444
No 163
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=25.63 E-value=1.2e+02 Score=18.12 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHCCCcEEEecCCccccch
Q psy5981 66 GDVAVDKIIKISAANGVAKLIVGQNGILSTP 96 (131)
Q Consensus 66 s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP 96 (131)
-..++..++..|.+.|+.+..+. |+..++
T Consensus 9 C~~~a~l~~~llr~~GIpar~v~--g~~~~~ 37 (68)
T smart00460 9 CGEFAALFVALLRSLGIPARVVS--GYLKAP 37 (68)
T ss_pred eHHHHHHHHHHHHHCCCCeEEEe--eeecCC
Confidence 46788888999999999987763 554443
No 164
>PRK10646 ADP-binding protein; Provisional
Probab=25.44 E-value=2.8e+02 Score=20.63 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHH
Q psy5981 32 QEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKIS 77 (131)
Q Consensus 32 ~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L 77 (131)
+++-+.++++.+++.+. ++.-|++-.|-=..=-.|.+.++++|
T Consensus 10 s~~~t~~l~~~la~~l~---~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 10 DEQATLDLGARVAKACD---GATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred CHHHHHHHHHHHHHhCC---CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34446777877776553 22335566666666667777777766
No 165
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=25.05 E-value=49 Score=21.64 Aligned_cols=11 Identities=9% Similarity=-0.012 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy5981 67 DVAVDKIIKIS 77 (131)
Q Consensus 67 ~~~a~~~a~~L 77 (131)
..+...+.+.+
T Consensus 37 ~~~~~~i~~~i 47 (102)
T PF13676_consen 37 EDWREEIERAI 47 (102)
T ss_dssp S-HHCCCHHCC
T ss_pred CCHHHHHHHHH
Confidence 34444444444
No 166
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=24.99 E-value=3.8e+02 Score=21.84 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=31.3
Q ss_pred HHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEE
Q psy5981 41 QSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLI 86 (131)
Q Consensus 41 ~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~ 86 (131)
.++++++.+..+.+++.+-++.-..++...+.+.+.+.+.|.++..
T Consensus 149 ~~~~~~~~~~~~~k~va~i~~d~~~g~~~~~~~~~~~~~~G~~v~~ 194 (369)
T PRK15404 149 PTAAKYILEKVKPKRIAVLHDKQQYGEGLARSVKDGLKKAGANVVF 194 (369)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEE
Confidence 3444544333334567666666667888888888899999999864
No 167
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=24.84 E-value=1.9e+02 Score=19.84 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=14.8
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEE
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLI 86 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~ 86 (131)
+|+|+-|.-..|....+.+.+-....|.++++
T Consensus 5 ~ILvavD~S~~s~~al~~a~~la~~~~a~l~l 36 (144)
T PRK15118 5 HILIAVDLSPESKVLVEKAVSMARPYNAKVSL 36 (144)
T ss_pred EEEEEccCChhHHHHHHHHHHHHHhhCCEEEE
Confidence 35555555555544444433333334444443
No 168
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=24.65 E-value=93 Score=22.60 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=18.5
Q ss_pred CCcCHHHHH--HHHHHHHHHCCCcEEEe
Q psy5981 62 GRYFGDVAV--DKIIKISAANGVAKLIV 87 (131)
Q Consensus 62 ~R~~s~~~a--~~~a~~L~~~Gi~V~~~ 87 (131)
....|+++. +.+.++|...|++|+++
T Consensus 28 ~y~~SpEy~Dl~l~L~~~k~~g~~~lfV 55 (130)
T PF04914_consen 28 SYTKSPEYDDLQLLLDVCKELGIDVLFV 55 (130)
T ss_dssp --SS-THHHHHHHHHHHHHHTT-EEEEE
T ss_pred cccCCccHHHHHHHHHHHHHcCCceEEE
Confidence 346788885 55889999999999876
No 169
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.28 E-value=3.7e+02 Score=21.37 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=27.9
Q ss_pred HHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 41 QSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 41 ~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
..+++++.++.+.++|.+-++.-..+...++.+.+.+.+.|+++...
T Consensus 132 ~~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~ 178 (362)
T cd06343 132 RIYAKYLVEEKPNAKIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVAE 178 (362)
T ss_pred HHHHHHHHHhCCCceEEEEEeccHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 34444443322334554444444457778888888888889887543
No 170
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=23.51 E-value=2.4e+02 Score=18.90 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=17.4
Q ss_pred EEEEecCCcCHHHHHHHHHHHHHHCCCcE
Q psy5981 56 LVVGGDGRYFGDVAVDKIIKISAANGVAK 84 (131)
Q Consensus 56 vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V 84 (131)
|++.-.+..+|-.+++.+-+.+..+|+++
T Consensus 2 Il~~Cg~G~sTS~~~~ki~~~~~~~~~~~ 30 (96)
T cd05564 2 ILLVCSAGMSTSILVKKMKKAAEKRGIDA 30 (96)
T ss_pred EEEEcCCCchHHHHHHHHHHHHHHCCCce
Confidence 44444455555566666666777777653
No 171
>KOG1322|consensus
Probab=23.50 E-value=1.3e+02 Score=25.82 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCC
Q psy5981 68 VAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNP 118 (131)
Q Consensus 68 ~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP 118 (131)
.+...-.+.|..+|++-+++- .-+-|.-......+.+ ..-||-|+|||--
T Consensus 41 pmI~hqieal~nsGi~~I~la-~~y~s~sl~~~~~k~y~~~lgVei~~s~et 91 (371)
T KOG1322|consen 41 PMILHQIEALINSGITKIVLA-TQYNSESLNRHLSKAYGKELGVEILASTET 91 (371)
T ss_pred hhhHHHHHHHHhCCCcEEEEE-EecCcHHHHHHHHHHhhhccceEEEEEecc
Confidence 344455678999999765442 2467777788888888 7778999999853
No 172
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=23.14 E-value=2.5e+02 Score=23.54 Aligned_cols=61 Identities=8% Similarity=0.065 Sum_probs=38.8
Q ss_pred CeEEEEecCCcCHHHHHHHHH------------HHHHHCCCcEEEecCCccccchH-HH------HHHHHh--cCceEEE
Q psy5981 54 SVLVVGGDGRYFGDVAVDKII------------KISAANGVAKLIVGQNGILSTPA-VS------ALIRKH--ILGRLVK 112 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a------------~~L~~~Gi~V~~~~~~g~~PTP~-vs------fav~~~--~~~GImI 112 (131)
..||+++|....+..-...+. ..+..+|++-.+++ -+..|-|. .. ++++.. .-.|
T Consensus 144 aaIvLaFn~~d~s~~gr~~~le~~~~~~~kgll~~a~e~GI~~~LvD-~~v~plgsg~g~s~r~~~~vK~~~G~P~G--- 219 (296)
T PF02007_consen 144 AAIVLAFNPMDPSVEGRIEMLENGGGGQDKGLLDIAEECGIENPLVD-TAVTPLGSGAGISIRAIFAVKAKFGYPVG--- 219 (296)
T ss_pred EEEEEecCCCCCChhhhHHHHhccCcccccchHHHHHHcCCcceeec-ccccCCcccchHHHHHHHHHHHHhCCCcc---
Confidence 358999999988886543333 44678999988773 35666665 32 334443 3333
Q ss_pred cCCCCC
Q psy5981 113 VPSSNP 118 (131)
Q Consensus 113 TASHNP 118 (131)
.|.||=
T Consensus 220 ~a~hN~ 225 (296)
T PF02007_consen 220 CAIHNA 225 (296)
T ss_pred cccccc
Confidence 467883
No 173
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=23.12 E-value=3.9e+02 Score=21.33 Aligned_cols=44 Identities=11% Similarity=-0.001 Sum_probs=28.1
Q ss_pred HHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEE
Q psy5981 43 ILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLI 86 (131)
Q Consensus 43 i~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~ 86 (131)
+.+++.+..+.+++.+=++.-..++.+++.+.+.+.+.|.+|+.
T Consensus 123 ~~~~~~~~~g~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~ 166 (348)
T cd06355 123 AVDWLMSNKGGKRFYLVGSDYVYPRTANKILKAQLESLGGEVVG 166 (348)
T ss_pred HHHHHHhccCCCeEEEECCcchHHHHHHHHHHHHHHHcCCeEEe
Confidence 33444332234556555554456778888888888889999764
No 174
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=22.98 E-value=1.2e+02 Score=24.71 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=25.1
Q ss_pred EEEEecCCcCHHHHHHHHHHHHHHCCCcEEEec
Q psy5981 56 LVVGGDGRYFGDVAVDKIIKISAANGVAKLIVG 88 (131)
Q Consensus 56 vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~ 88 (131)
+++|.|.+.+++.+...+-+....+|.+++.++
T Consensus 153 l~~G~n~~~~~p~~~~~~~~a~~~~g~kli~id 185 (386)
T cd02768 153 LLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIG 185 (386)
T ss_pred EEEcCCcchhchHHHHHHHHHHHcCCCeEEEEC
Confidence 568999998888776666665555699988873
No 175
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=22.90 E-value=2.4e+02 Score=24.69 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=35.6
Q ss_pred CCCeEEEEecCCcCHHHHHHHHHHHHHHC-CCcEEEecCCccccchHH-HHHHHHhcCceEEEcCCCCCC
Q psy5981 52 KGSVLVVGGDGRYFGDVAVDKIIKISAAN-GVAKLIVGQNGILSTPAV-SALIRKHILGRLVKVPSSNPS 119 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s~~~a~~~a~~L~~~-Gi~V~~~~~~g~~PTP~v-sfav~~~~~~GImITASHNP~ 119 (131)
++.+|++-.|.+++- .++..+..++.. |++|.++...++.|.+-+ .++ . ..|..|+-+|||.
T Consensus 240 ~G~kIa~vGD~~~~r--v~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~-~---~~G~~v~~~~d~~ 303 (429)
T PRK11891 240 DGAHIALVGDLKYGR--TVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQI-S---RNGHVIEQTDDLA 303 (429)
T ss_pred CCCEEEEECcCCCCh--HHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHH-H---hcCCeEEEEcCHH
Confidence 345677666985432 235556666665 999998876676444433 222 1 1244455567764
No 176
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=22.81 E-value=58 Score=24.36 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=20.3
Q ss_pred ccccchHHHHHH--HHh-cCceEEEcCCCC
Q psy5981 91 GILSTPAVSALI--RKH-ILGRLVKVPSSN 117 (131)
Q Consensus 91 g~~PTP~vsfav--~~~-~~~GImITASHN 117 (131)
|.+|+|++.|.- .+. .+-||+-++.-|
T Consensus 57 ~~Vp~~vi~FLn~~~Nr~~~rGViaSGN~N 86 (141)
T COG1780 57 GAVPKQVIRFLNNEHNRALCRGVIASGNRN 86 (141)
T ss_pred CccCHHHHHHhccccchhheEEEEecCCcc
Confidence 699999999996 222 467888777655
No 177
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=22.70 E-value=1.8e+02 Score=17.93 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=21.2
Q ss_pred EEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 57 VVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 57 vVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++|..-+...+-.+..+.+.|+.+|+.++.+
T Consensus 11 v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~i 41 (65)
T PF13840_consen 11 VVGPGLRFDVPGVAAKIFSALAEAGINIFMI 41 (65)
T ss_dssp EEEECGTTTSHHHHHHHHHHHHHTTS-ECEE
T ss_pred EEccccCCCcccHHHHHHHHHHHCCCCEEEE
Confidence 3454466645667777888999999998655
No 178
>COG5402 Uncharacterized conserved protein [Function unknown]
Probab=22.54 E-value=29 Score=27.07 Aligned_cols=30 Identities=13% Similarity=0.016 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHhcCceEEEcCCCCCCCCC
Q psy5981 93 LSTPAVSALIRKHILGRLVKVPSSNPSRTI 122 (131)
Q Consensus 93 ~PTP~vsfav~~~~~~GImITASHNP~~~n 122 (131)
.|.-.-|+.+...+|+++.||=||.+.++|
T Consensus 123 ~~~Al~s~~Vlrs~Dg~~~I~vsp~a~pgn 152 (194)
T COG5402 123 RPSALNSRTVLRSADGSWVITVSPDAQPGN 152 (194)
T ss_pred CchheeceeeeeecCCcEEEEECCCCCCCc
Confidence 444445555555579999999999999887
No 179
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=22.50 E-value=2.3e+02 Score=23.22 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=35.5
Q ss_pred CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCCC
Q psy5981 52 KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPSR 120 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~~ 120 (131)
++.+|.+-.|... .++..+..|+..|++|+++...++.|.+.+ +..+ ...|.-++-+||+.+
T Consensus 151 ~gl~i~~vGd~~~----v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~---~~~~~~~~g~~~~~~~d~~~ 213 (304)
T PRK00779 151 KGLKVAWVGDGNN----VANSLLLAAALLGFDLRVATPKGYEPDPEI---VEKIAKETGASIEVTHDPKE 213 (304)
T ss_pred CCcEEEEEeCCCc----cHHHHHHHHHHcCCEEEEECCcccCCCHHH---HHHHHHHcCCeEEEEcCHHH
Confidence 3445655556211 455666778889999999876666664422 1111 123445666677644
No 180
>PF09717 CPW_WPC: Plasmodium falciparum domain of unknown function (CPW_WPC); InterPro: IPR006387 This entry represents a domain of about 61 residues in length with six well-conserved cysteine residues and six well-conserved aromatic sites. The domain can be found in tandem repeats. It is named for motifs of CPxxW and (less well conserved) WPC. Its function is unknown.
Probab=22.47 E-value=45 Score=20.65 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=8.9
Q ss_pred CCCCCCCCcccc
Q psy5981 118 PSRTIRPCPLLI 129 (131)
Q Consensus 118 P~~~ng~~~~~~ 129 (131)
|..|+|||.-.+
T Consensus 24 p~~Y~GpC~~~~ 35 (60)
T PF09717_consen 24 PDSYNGPCKRKI 35 (60)
T ss_pred CcccCCCCcCcc
Confidence 467999997543
No 181
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=22.46 E-value=2e+02 Score=24.31 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=28.9
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHH
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVS 99 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vs 99 (131)
++++|-.|......-+.+.+.+.|...|+++..+ +++.|-|.+.
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~--~~v~~~P~~~ 93 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLW--PCPVGEPCIT 93 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEE--CCCCCCcCHH
Confidence 4555555654433334556888899999998776 3677777555
No 182
>PRK15005 universal stress protein F; Provisional
Probab=22.41 E-value=2e+02 Score=19.51 Aligned_cols=7 Identities=29% Similarity=0.966 Sum_probs=3.9
Q ss_pred CCccccc
Q psy5981 124 PCPLLIT 130 (131)
Q Consensus 124 ~~~~~~~ 130 (131)
|||+|+.
T Consensus 137 ~cpVlvV 143 (144)
T PRK15005 137 ECSVLVV 143 (144)
T ss_pred CCCEEEe
Confidence 4666554
No 183
>TIGR01492 CPW_WPC Plasmodium falciparum CPW-WPC domain. This model represents a domain of about 61 residues in length with six well-conserved cysteine residues and six well-conserved aromatic sites. The domain can be found in tandem repeats, and is known so far only in Plasmodium falciparum. It is named for motifs of CPxxW and (less well conserved) WPC.
Probab=22.36 E-value=45 Score=20.95 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=8.7
Q ss_pred CCCCCCCCcc
Q psy5981 118 PSRTIRPCPL 127 (131)
Q Consensus 118 P~~~ng~~~~ 127 (131)
|..|+|||.-
T Consensus 26 p~~Y~GpC~~ 35 (62)
T TIGR01492 26 PDNYKGPCER 35 (62)
T ss_pred CcccCCCCCC
Confidence 8899999984
No 184
>TIGR01089 fucI L-fucose isomerase. This enzyme catalyzes the first step in fucose metabolism, and has been characterized in Escherichia coli and Bacteroides thetaiotaomicron.
Probab=22.32 E-value=2.6e+02 Score=25.62 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=39.6
Q ss_pred cCCccccCCcccchHHHHHHHHHHHHHhcc---cCCCCe-EEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 20 TSGLRKPTKTFQQEHYTENFIQSILTALGD---KLKGSV-LVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 20 T~GiRg~~g~~~~~~~~~~~~~ai~~~~~~---~~~~~~-vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+||-|.-+.+.+.++ +.+++++.++.+.+ +..+.. -+|--|+=..+..-+.++++-|...|+++.++
T Consensus 12 iDgR~~~vresle~~-tm~mak~~a~~i~~~L~~~~G~~ve~viad~~I~~~aeA~a~a~kfk~~~Vd~tIt 82 (587)
T TIGR01089 12 IDGRRMGVRESLEEQ-TMNMAKAVAALLTEKLRHADGAAVECVIADTTIGGVAEAAACAEKFSRENVGLTIT 82 (587)
T ss_pred ccCcccchhhHHHHH-HHHHHHHHHHHHHHHhcccCCCeEEEEeCccccCCHHHHHHHHHHHhhcCCCEEEE
Confidence 555554333322222 34555555555543 222232 24556777777777888889999999998765
No 185
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.91 E-value=2.5e+02 Score=18.63 Aligned_cols=14 Identities=7% Similarity=-0.005 Sum_probs=8.4
Q ss_pred HHHHHHCCCcEEEe
Q psy5981 74 IKISAANGVAKLIV 87 (131)
Q Consensus 74 a~~L~~~Gi~V~~~ 87 (131)
.+.+.+..-+++.+
T Consensus 44 ~~~~~~~~pd~V~i 57 (121)
T PF02310_consen 44 VEALRAERPDVVGI 57 (121)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHhcCCCcEEEE
Confidence 44456667776655
No 186
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=21.75 E-value=2.3e+02 Score=23.62 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=29.4
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHH
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVS 99 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vs 99 (131)
++++|-.|.......+.+.+.+.|..+|+++..+ ++..|.|...
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~--~~v~~~p~~~ 72 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVF--SDVSPNPRDE 72 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEe--CCCCCCCCHH
Confidence 4566666754322225566788899999998777 3677777654
No 187
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=21.73 E-value=3.2e+02 Score=21.90 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=25.4
Q ss_pred CCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 53 GSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 53 ~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
.+.||+-||+.. +......++..|.+.|++.+-+
T Consensus 230 ~G~IILmHd~~~-T~~aL~~iI~~Lk~kGy~fvtl 263 (268)
T TIGR02873 230 PGAMVLMHPTAS-STEGLEEMITIIKEKGYKIGTI 263 (268)
T ss_pred CCcEEEEcCCcc-HHHHHHHHHHHHHHCCCEEEeH
Confidence 456899999864 4455677888899999986544
No 188
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=21.65 E-value=3.3e+02 Score=21.58 Aligned_cols=47 Identities=9% Similarity=0.126 Sum_probs=31.5
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHH--CCCcEEE
Q psy5981 40 IQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAA--NGVAKLI 86 (131)
Q Consensus 40 ~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~--~Gi~V~~ 86 (131)
+..++.++.+..+.+++.|-++....++...+.+.+.+.. .|++|+.
T Consensus 130 ~~~l~~~~~~~~~~k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~ 178 (342)
T cd06329 130 MEALASYIKKQPDGKKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVG 178 (342)
T ss_pred HHHHHHHHHhcccCceEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEec
Confidence 3444555443222456766666667788888888899998 9998763
No 189
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=21.63 E-value=67 Score=23.33 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=17.3
Q ss_pred ceEEEcCCCCCCCCCCCCccc
Q psy5981 108 GRLVKVPSSNPSRTIRPCPLL 128 (131)
Q Consensus 108 ~GImITASHNP~~~ng~~~~~ 128 (131)
+.++.+-|-+-..|.||||--
T Consensus 84 ~~~~g~n~~~~~~Y~gP~Pp~ 104 (150)
T cd00865 84 GAVQGRNDFGEAGYGGPCPPD 104 (150)
T ss_pred CCeEeecCCCCCeecCCCCcC
Confidence 567777788899999999964
No 190
>KOG2781|consensus
Probab=21.40 E-value=48 Score=27.32 Aligned_cols=52 Identities=13% Similarity=-0.036 Sum_probs=28.2
Q ss_pred EEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCC
Q psy5981 58 VGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 58 VG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~ 119 (131)
|.++-|.-+..+.+.+- ..+.|-++....-+ =-|.- .- .+.=||||-||||.
T Consensus 42 ip~elrkda~~l~d~~~--~ed~~~~~~~~~vd-------dEy~~-ag~~dPKimvTTSR~PS 94 (290)
T KOG2781|consen 42 IPKELRKDALLLKDEIY--YEDEGGEADDSHVD-------DEYRW-AGEEDPKIMVTTSRDPS 94 (290)
T ss_pred CChHHHHhHHHhhhhhh--cccccccccccccc-------HHHHh-ccCCCCcEEEEeCCCch
Confidence 67788877776655432 22334332211000 01221 12 57789999999996
No 191
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=21.24 E-value=4.3e+02 Score=21.02 Aligned_cols=52 Identities=23% Similarity=0.116 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhcccC--------C--CCe-EEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 34 HYTENFIQSILTALGDKL--------K--GSV-LVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 34 ~~~~~~~~ai~~~~~~~~--------~--~~~-vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
.+.++.++++++.+.+.. . .++ +|+..-+...++-|+ +|+-|...|++|.++
T Consensus 31 ~LME~AG~ava~~i~~~~~~~~~~~~~~~~~~V~VlcG~GNNGGDGlv--~AR~L~~~G~~V~v~ 93 (246)
T PLN03050 31 QLMELAGLSVAEAVYEVADGEKASNPPGRHPRVLLVCGPGNNGGDGLV--AARHLAHFGYEVTVC 93 (246)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCccCCCCeEEEEECCCCCchhHHH--HHHHHHHCCCeEEEE
Confidence 345556666666554322 1 134 466777888888776 778899999999776
No 192
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=20.98 E-value=1.1e+02 Score=25.36 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=22.0
Q ss_pred HHHHHHHHHCCCcEEEecCCccccchH
Q psy5981 71 DKIIKISAANGVAKLIVGQNGILSTPA 97 (131)
Q Consensus 71 ~~~a~~L~~~Gi~V~~~~~~g~~PTP~ 97 (131)
.+.+++|...|+||+++.+.|---||-
T Consensus 60 ~amve~L~~~GvdV~ifddtg~~~TPD 86 (318)
T COG4874 60 NAMVEGLRQAGVDVVIFDDTGQGETPD 86 (318)
T ss_pred HHHHHHHHhcCceEEEeecCCCCCCCc
Confidence 346789999999999997777777774
No 193
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=20.82 E-value=3e+02 Score=20.13 Aligned_cols=45 Identities=16% Similarity=0.266 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcccC-CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcE
Q psy5981 37 ENFIQSILTALGDKL-KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAK 84 (131)
Q Consensus 37 ~~~~~ai~~~~~~~~-~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V 84 (131)
.+++..+...+.+.. .++-+++|| ..|-.+|..+|+-|.+.|.+|
T Consensus 49 ~~la~~y~~~I~~~~~~gp~~L~G~---S~Gg~lA~E~A~~Le~~G~~v 94 (229)
T PF00975_consen 49 EELASRYAEAIRARQPEGPYVLAGW---SFGGILAFEMARQLEEAGEEV 94 (229)
T ss_dssp HHHHHHHHHHHHHHTSSSSEEEEEE---THHHHHHHHHHHHHHHTT-SE
T ss_pred HHHHHHHHHHhhhhCCCCCeeehcc---CccHHHHHHHHHHHHHhhhcc
Confidence 334444444443322 234578888 478899999999999999976
No 194
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=20.80 E-value=3.6e+02 Score=20.06 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=36.7
Q ss_pred cCHHHHHHHHHHHHHHCCCcEEEecCCccccc---hHHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 64 YFGDVAVDKIIKISAANGVAKLIVGQNGILST---PAVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 64 ~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PT---P~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
.+...++++ .+-+.+.|++|+.+. .|.... +.+.-++.+. ..+.++|.|+.|=...+.
T Consensus 75 ~~~~~~~~a-i~~a~~~~v~Vin~S-~G~~~~~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~ 136 (222)
T cd07492 75 CNSFVLEKA-LRACVENDIRIVNLS-LGGPGDRDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT 136 (222)
T ss_pred cCHHHHHHH-HHHHHHCCCCEEEeC-CCCCCCCcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
Confidence 344445444 455667999998774 354433 5666566555 558899999988544433
No 195
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.68 E-value=1.7e+02 Score=17.28 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=21.1
Q ss_pred EEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 57 VVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 57 vVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+||.+-+... .+...+.+.|...|+++..+
T Consensus 6 vvg~~~~~~~-~~~~~if~~L~~~~I~v~~i 35 (66)
T cd04919 6 LVGKHMKNMI-GIAGRMFTTLADHRINIEMI 35 (66)
T ss_pred EECCCCCCCc-CHHHHHHHHHHHCCCCEEEE
Confidence 5777776654 44445778889999998655
No 196
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=20.62 E-value=3.6e+02 Score=22.77 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=35.7
Q ss_pred CeEEEEecCCcCHHHHHHH------------HHHHHHHCCCcEEEecCCccccchH---------HHHHHHHh
Q psy5981 54 SVLVVGGDGRYFGDVAVDK------------IIKISAANGVAKLIVGQNGILSTPA---------VSALIRKH 105 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~------------~a~~L~~~Gi~V~~~~~~g~~PTP~---------vsfav~~~ 105 (131)
..|++++|.+..|.+=... +...+..+|++-.++ +...||. ..++++..
T Consensus 149 aaIiLaFnp~dpsv~gr~~~l~~gg~~~~~gll~~ae~~GI~~pli---D~avtplg~g~g~a~r~~~a~K~k 218 (314)
T TIGR01114 149 AAIVLAFNPMDPTVEGKIDILEVGGGTSDKGMLEIAEECGIKYPLI---DVAVTPLGAGAGAAVRSSFAVKAK 218 (314)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCccccccHHHHHHHcCCCceee---cccccCCCCCccHHHHHHHHHHHH
Confidence 3599999999888765544 455678899998877 4677766 45666554
No 197
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=20.57 E-value=3.5e+02 Score=26.80 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=42.4
Q ss_pred CCeEEEE---ecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCC
Q psy5981 53 GSVLVVG---GDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPS 115 (131)
Q Consensus 53 ~~~vvVG---~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITAS 115 (131)
+++||++ .|..--+..+. +-.|..+|++|++++. -+|...+-=++++. ++ -|.++++
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV---~~~L~~~GfeVIdLG~--dVp~e~iv~aa~e~~~d-iVgLS~L 792 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIV---GVVLSCNGYEVVDLGV--MVPIEKILEAAKDHNAD-VIGLSGL 792 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHH---HHHHHhCCCEEEECCC--CCCHHHHHHHHHHhCCC-EEEEcCc
Confidence 3567766 68888888665 5559999999999953 58888888888887 54 3666665
No 198
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=20.49 E-value=4.9e+02 Score=21.40 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=35.1
Q ss_pred eEEEEecCC---cCHH---HHHHHHHHHHHHCCCcEEEecCCccccchH-HHHHHHHh--cCceE-EE
Q psy5981 55 VLVVGGDGR---YFGD---VAVDKIIKISAANGVAKLIVGQNGILSTPA-VSALIRKH--ILGRL-VK 112 (131)
Q Consensus 55 ~vvVG~D~R---~~s~---~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~-vsfav~~~--~~~GI-mI 112 (131)
.|+||.|+| .+.+ .+...+.+.+...|..+++... .=||. +.-+.++. ...++ +.
T Consensus 150 avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttS---RRTp~~~~~~L~~~~~~~~~~~~~ 214 (311)
T PF06258_consen 150 AVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTS---RRTPPEAEAALRELLKDNPGVYIW 214 (311)
T ss_pred EEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcC---CCCcHHHHHHHHHhhcCCCceEEe
Confidence 478999998 4445 6677788889999988777632 33444 33334444 34566 44
No 199
>PTZ00445 p36-lilke protein; Provisional
Probab=20.30 E-value=3.9e+02 Score=21.36 Aligned_cols=59 Identities=17% Similarity=0.022 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHHCCCcEEEecCCc------------cccchHHHHHHHHh-cCceEEEcCCCCCCCCCCC
Q psy5981 65 FGDVAVDKIIKISAANGVAKLIVGQNG------------ILSTPAVSALIRKH-ILGRLVKVPSSNPSRTIRP 124 (131)
Q Consensus 65 ~s~~~a~~~a~~L~~~Gi~V~~~~~~g------------~~PTP~vsfav~~~-~~~GImITASHNP~~~ng~ 124 (131)
-.++|.. ..+.|...|+.|.++.... +.-.+++++++++- |+.=|-.+=--+|+-|.-|
T Consensus 76 ~tpefk~-~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p 147 (219)
T PTZ00445 76 VTPDFKI-LGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEP 147 (219)
T ss_pred CCHHHHH-HHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCCh
Confidence 4566655 5777888999987764211 23357899999887 8887877777888888776
No 200
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=20.18 E-value=2.2e+02 Score=21.31 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHH--CCCcEEEecCCccccchHHHHHHHH
Q psy5981 66 GDVAVDKIIKISAA--NGVAKLIVGQNGILSTPAVSALIRK 104 (131)
Q Consensus 66 s~~~a~~~a~~L~~--~Gi~V~~~~~~g~~PTP~vsfav~~ 104 (131)
|++-++.+++.+.. .+...+ ..+.||.++.++++
T Consensus 8 s~~T~~~l~~~l~~~~~~~~~i-----aclstPsl~~~l~~ 43 (162)
T PF10237_consen 8 SDETAEFLARELLDGALDDTRI-----ACLSTPSLYEALKK 43 (162)
T ss_pred CHHHHHHHHHHHHHhcCCCCEE-----EEEeCcHHHHHHHh
Confidence 44555555665555 222222 25889999999888
No 201
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=20.18 E-value=4.3e+02 Score=20.63 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHCCCcEEEecCCcc-cc------chHHHHHHHHh-cCceEEEcCCCCCC
Q psy5981 66 GDVAVDKIIKISAANGVAKLIVGQNGI-LS------TPAVSALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 66 s~~~a~~~a~~L~~~Gi~V~~~~~~g~-~P------TP~vsfav~~~-~~~GImITASHNP~ 119 (131)
...+++++ +-....|++|+.+.- |. .+ ++.+.-++++. ..+=++|.|+.|-.
T Consensus 88 ~~~i~~Ai-~~Ai~~gadIIn~S~-g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g 147 (247)
T cd07491 88 PQSAAKAI-EAAVEKKVDIISMSW-TIKKPEDNDNDINELENAIKEALDRGILLFCSASDQG 147 (247)
T ss_pred HHHHHHHH-HHHHHCCCcEEEeee-ecccccccccchHHHHHHHHHHHhCCeEEEEecCCCC
Confidence 34455544 334568999988753 43 22 56777777766 44445555666643
No 202
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=20.14 E-value=2.6e+02 Score=23.26 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=28.2
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHH
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVS 99 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vs 99 (131)
++++|-.|.....--+.+.+.+.|..+|+++..+. ++.|-|.+.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~--~v~~~p~~~ 67 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFD--DVVSEPTDE 67 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEEC--CCCCCcCHH
Confidence 35555557554322255668888999999987763 566666654
Done!