Query psy5981
Match_columns 131
No_of_seqs 165 out of 1233
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 23:32:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pmg_A Alpha-D-glucose-1,6-bis 100.0 5.5E-36 1.9E-40 259.3 9.4 120 4-123 2-127 (561)
2 3pdk_A Phosphoglucosamine muta 100.0 1.7E-34 5.9E-39 245.3 11.7 106 15-123 23-129 (469)
3 3i3w_A Phosphoglucosamine muta 100.0 4.9E-34 1.7E-38 240.7 11.4 104 16-123 3-109 (443)
4 2f7l_A 455AA long hypothetical 100.0 6.9E-34 2.4E-38 239.8 11.8 102 16-123 3-105 (455)
5 1wqa_A Phospho-sugar mutase; a 100.0 6.8E-34 2.3E-38 239.8 11.6 105 16-123 3-109 (455)
6 1tuo_A Putative phosphomannomu 100.0 6.7E-34 2.3E-38 240.7 11.6 107 14-123 10-117 (464)
7 1p5d_X PMM, phosphomannomutase 100.0 9.1E-34 3.1E-38 239.5 10.9 108 12-123 8-116 (463)
8 3na5_A Phosphoglucomutase; iso 100.0 7.3E-34 2.5E-38 246.5 8.8 119 5-123 43-178 (570)
9 2z0f_A Putative phosphoglucomu 100.0 2.7E-33 9.2E-38 239.7 11.6 115 9-123 17-138 (524)
10 1kfi_A Phosphoglucomutase 1; p 100.0 1.6E-33 5.5E-38 243.7 9.5 118 6-123 9-138 (572)
11 3uw2_A Phosphoglucomutase/phos 100.0 2.3E-33 7.8E-38 239.5 9.8 110 10-123 20-138 (485)
12 4hjh_A Phosphomannomutase; str 100.0 3E-33 1E-37 237.6 9.7 105 14-123 8-116 (481)
13 2dka_A Phosphoacetylglucosamin 99.2 7E-12 2.4E-16 107.9 4.1 22 102-123 51-74 (544)
14 2dka_A Phosphoacetylglucosamin 97.9 1.2E-05 4.1E-10 69.1 6.2 48 55-105 134-182 (544)
15 4dik_A Flavoprotein; TM0755, e 88.5 2.3 8E-05 34.9 8.7 65 52-117 264-331 (410)
16 3fni_A Putative diflavin flavo 86.4 3.1 0.00011 29.3 7.3 62 53-117 4-68 (159)
17 1o1x_A Ribose-5-phosphate isom 85.7 3.4 0.00011 30.2 7.2 60 54-115 13-79 (155)
18 2vvp_A Ribose-5-phosphate isom 83.9 3.6 0.00012 30.2 6.8 59 55-115 5-71 (162)
19 2vvr_A Ribose-5-phosphate isom 83.9 2.9 9.8E-05 30.3 6.1 59 55-115 3-68 (149)
20 3hly_A Flavodoxin-like domain; 82.2 6.4 0.00022 27.5 7.4 58 56-117 3-63 (161)
21 3he8_A Ribose-5-phosphate isom 80.7 8.4 0.00029 27.8 7.6 59 55-115 2-67 (149)
22 3ph3_A Ribose-5-phosphate isom 77.4 11 0.00038 27.8 7.5 59 55-115 22-87 (169)
23 3s5p_A Ribose 5-phosphate isom 69.5 13 0.00046 27.3 6.2 60 54-115 22-88 (166)
24 5nul_A Flavodoxin; electron tr 68.9 9.6 0.00033 25.3 5.1 31 57-87 2-33 (138)
25 1y80_A Predicted cobalamin bin 67.9 21 0.00071 25.9 7.1 59 53-117 88-150 (210)
26 2ppw_A Conserved domain protei 67.0 11 0.00039 28.8 5.6 61 55-115 5-77 (216)
27 1zq6_A Otcase, ornithine carba 65.8 13 0.00046 30.3 6.2 69 51-119 188-260 (359)
28 1ccw_A Protein (glutamate muta 64.0 12 0.00041 25.7 4.9 52 58-115 11-63 (137)
29 1ycg_A Nitric oxide reductase; 59.9 40 0.0014 26.2 7.8 60 54-117 252-314 (398)
30 3k7p_A Ribose 5-phosphate isom 57.4 26 0.00089 26.0 5.9 59 55-115 24-91 (179)
31 4em8_A Ribose 5-phosphate isom 56.3 34 0.0012 24.6 6.2 59 55-115 9-73 (148)
32 2yxb_A Coenzyme B12-dependent 54.4 20 0.00067 25.4 4.7 57 53-115 18-78 (161)
33 4amu_A Ornithine carbamoyltran 53.4 22 0.00076 29.0 5.4 66 51-119 178-246 (365)
34 3tnj_A Universal stress protei 52.9 24 0.00083 23.1 4.8 34 54-87 7-40 (150)
35 1jmv_A USPA, universal stress 51.8 28 0.00095 22.6 4.9 34 54-87 3-36 (141)
36 3ono_A Ribose/galactose isomer 51.8 29 0.00098 26.5 5.5 61 55-115 5-76 (214)
37 2yfk_A Aspartate/ornithine car 50.9 16 0.00053 30.5 4.2 68 52-119 187-258 (418)
38 3ezx_A MMCP 1, monomethylamine 50.7 72 0.0025 23.5 9.5 59 53-117 92-156 (215)
39 3q98_A Transcarbamylase; rossm 50.2 16 0.00056 30.2 4.2 68 52-119 190-261 (399)
40 3f6r_A Flavodoxin; FMN binding 49.6 26 0.00089 23.4 4.6 33 55-87 3-36 (148)
41 3hgm_A Universal stress protei 49.1 19 0.00066 23.4 3.8 34 54-87 3-36 (147)
42 3sgw_A Ribose 5-phosphate isom 47.5 59 0.002 24.2 6.5 59 55-115 31-99 (184)
43 2c71_A Glycoside hydrolase, fa 46.8 43 0.0015 24.4 5.7 33 53-85 148-183 (216)
44 1q77_A Hypothetical protein AQ 46.2 25 0.00086 22.7 4.0 34 54-87 5-38 (138)
45 3s3t_A Nucleotide-binding prot 46.0 25 0.00086 22.9 4.0 34 54-87 6-39 (146)
46 2i2x_B MTAC, methyltransferase 45.9 53 0.0018 24.8 6.3 60 53-118 123-186 (258)
47 2hna_A Protein MIOC, flavodoxi 45.9 36 0.0012 22.8 4.8 33 55-87 3-36 (147)
48 2ohh_A Type A flavoprotein FPR 45.9 1E+02 0.0035 23.8 8.7 61 53-117 256-319 (404)
49 1ny1_A Probable polysaccharide 45.8 48 0.0016 24.6 5.9 36 52-87 191-226 (240)
50 3bul_A Methionine synthase; tr 45.6 1.3E+02 0.0043 26.0 9.2 60 53-118 98-161 (579)
51 1vlv_A Otcase, ornithine carba 45.1 39 0.0013 27.1 5.5 65 51-119 165-231 (325)
52 1e5d_A Rubredoxin\:oxygen oxid 43.7 1.1E+02 0.0038 23.6 9.8 35 53-87 252-287 (402)
53 2i6u_A Otcase, ornithine carba 43.5 35 0.0012 27.0 5.0 45 51-98 146-190 (307)
54 2z08_A Universal stress protei 43.1 29 0.001 22.4 3.9 8 124-131 130-137 (137)
55 3grf_A Ornithine carbamoyltran 43.0 31 0.0011 27.6 4.7 65 52-119 160-229 (328)
56 1dxh_A Ornithine carbamoyltran 42.6 30 0.001 27.9 4.5 64 53-120 155-220 (335)
57 3c5y_A Ribose/galactose isomer 42.5 38 0.0013 26.2 4.9 60 56-115 24-93 (231)
58 2vzf_A NADH-dependent FMN redu 42.5 78 0.0027 22.3 6.4 24 64-87 16-40 (197)
59 4a8t_A Putrescine carbamoyltra 41.7 34 0.0012 27.6 4.8 63 53-119 175-238 (339)
60 2j13_A Polysaccharide deacetyl 40.8 49 0.0017 24.8 5.3 35 53-87 204-238 (247)
61 2gm3_A Unknown protein; AT3G01 40.5 39 0.0013 22.9 4.4 46 73-120 92-137 (175)
62 3csu_A Protein (aspartate carb 39.7 64 0.0022 25.6 6.0 64 51-120 152-217 (310)
63 3fdx_A Putative filament prote 39.0 32 0.0011 22.2 3.6 34 54-87 2-37 (143)
64 4a8p_A Putrescine carbamoyltra 38.9 39 0.0013 27.5 4.7 63 53-119 153-216 (355)
65 2a5l_A Trp repressor binding p 38.7 89 0.003 21.6 6.2 33 55-87 7-40 (200)
66 1duv_G Octase-1, ornithine tra 38.7 35 0.0012 27.5 4.3 64 52-119 154-219 (333)
67 4h31_A Otcase, ornithine carba 38.6 30 0.001 28.0 4.0 64 53-119 181-245 (358)
68 2fz5_A Flavodoxin; alpha/beta 38.1 79 0.0027 20.3 6.4 19 66-84 13-31 (137)
69 2ark_A Flavodoxin; FMN, struct 37.8 86 0.0029 21.8 6.0 33 55-87 6-40 (188)
70 3fg9_A Protein of universal st 37.3 35 0.0012 22.6 3.6 35 53-87 15-51 (156)
71 4ekn_B Aspartate carbamoyltran 37.2 66 0.0023 25.4 5.7 65 51-120 149-214 (306)
72 1tq8_A Hypothetical protein RV 35.8 40 0.0014 22.9 3.8 34 53-87 17-50 (163)
73 1pvv_A Otcase, ornithine carba 35.3 52 0.0018 26.1 4.8 64 51-119 153-218 (315)
74 4ep1_A Otcase, ornithine carba 34.9 36 0.0012 27.5 3.9 65 51-119 177-242 (340)
75 1pg5_A Aspartate carbamoyltran 34.8 48 0.0016 26.1 4.5 62 51-120 147-209 (299)
76 3ooo_A Proline dipeptidase; st 34.6 74 0.0025 20.8 4.9 41 73-118 8-53 (132)
77 2w37_A Ornithine carbamoyltran 34.3 41 0.0014 27.4 4.1 65 51-119 174-240 (359)
78 3hr4_A Nitric oxide synthase, 33.8 1.1E+02 0.0036 22.9 6.2 57 52-117 39-98 (219)
79 3gd5_A Otcase, ornithine carba 33.8 36 0.0012 27.2 3.7 65 51-119 155-220 (323)
80 3i7m_A XAA-Pro dipeptidase; st 33.4 80 0.0027 20.8 5.0 41 73-118 9-54 (140)
81 1bvy_F Protein (cytochrome P45 33.1 47 0.0016 24.0 4.0 56 53-117 21-79 (191)
82 3dlo_A Universal stress protei 32.8 47 0.0016 22.3 3.8 64 66-131 76-155 (155)
83 3idf_A USP-like protein; unive 31.8 29 0.001 22.3 2.4 33 55-87 3-36 (138)
84 1mjh_A Protein (ATP-binding do 31.5 26 0.0009 23.3 2.2 34 54-87 6-39 (162)
85 2cc0_A Acetyl-xylan esterase; 30.9 96 0.0033 21.9 5.3 36 53-88 148-183 (195)
86 1f4p_A Flavodoxin; electron tr 30.2 65 0.0022 21.2 4.1 20 65-84 13-32 (147)
87 3mt0_A Uncharacterized protein 29.7 1.1E+02 0.0036 22.6 5.5 35 53-87 134-175 (290)
88 3b6i_A Flavoprotein WRBA; flav 29.0 1E+02 0.0036 21.1 5.2 33 55-87 3-37 (198)
89 2h54_A Caspase-1; allosteric s 28.7 1.6E+02 0.0056 21.1 7.9 60 56-118 47-120 (178)
90 2dum_A Hypothetical protein PH 28.6 36 0.0012 22.9 2.5 34 54-87 6-39 (170)
91 3o5v_A X-Pro dipeptidase; crea 28.2 1.1E+02 0.0038 19.9 4.9 40 73-117 8-52 (132)
92 3ab8_A Putative uncharacterize 28.0 76 0.0026 22.9 4.4 33 55-87 2-34 (268)
93 2nyt_A Probable C->U-editing e 27.5 1.6E+02 0.0056 21.5 6.2 34 53-87 111-145 (190)
94 2ehp_A AQ_1627 protein; putati 27.3 1.5E+02 0.0052 20.3 6.7 62 20-87 11-73 (126)
95 3sds_A Ornithine carbamoyltran 27.2 1.5E+02 0.005 24.0 6.3 43 52-98 187-229 (353)
96 3ipc_A ABC transporter, substr 27.1 96 0.0033 23.0 4.9 46 40-85 125-170 (356)
97 3tr9_A Dihydropteroate synthas 26.6 57 0.0019 26.1 3.7 28 60-88 42-69 (314)
98 3cis_A Uncharacterized protein 25.9 82 0.0028 23.4 4.3 34 54-87 172-205 (309)
99 2zki_A 199AA long hypothetical 25.6 82 0.0028 21.8 4.1 33 55-87 6-38 (199)
100 3tpf_A Otcase, ornithine carba 25.5 64 0.0022 25.5 3.8 63 53-119 146-209 (307)
101 1ykg_A SIR-FP, sulfite reducta 24.1 52 0.0018 22.7 2.7 32 55-86 11-43 (167)
102 3ckm_A YRAM (HI1655), LPOA; pe 23.8 2.3E+02 0.0077 21.1 7.5 62 57-125 37-100 (327)
103 2q62_A ARSH; alpha/beta, flavo 23.3 2.3E+02 0.008 21.1 6.8 33 55-87 36-71 (247)
104 2c1l_A Restriction endonucleas 23.2 85 0.0029 25.2 4.0 31 55-89 68-100 (358)
105 1usg_A Leucine-specific bindin 23.1 1.6E+02 0.0054 21.6 5.4 45 41-85 126-170 (346)
106 2au3_A DNA primase; zinc ribbo 22.9 1.1E+02 0.0036 24.7 4.7 34 54-87 288-321 (407)
107 3pn9_A Proline dipeptidase; st 22.8 1.2E+02 0.0042 19.6 4.3 40 73-117 10-54 (138)
108 3lkb_A Probable branched-chain 22.3 1E+02 0.0035 23.3 4.3 47 40-86 130-176 (392)
109 1ydg_A Trp repressor binding p 22.2 1.8E+02 0.006 20.3 5.4 33 55-87 8-41 (211)
110 4eyg_A Twin-arginine transloca 22.2 2.1E+02 0.0073 21.1 6.1 47 39-86 126-172 (368)
111 1oth_A Protein (ornithine tran 21.9 56 0.0019 26.1 2.8 44 51-98 153-196 (321)
112 1ml4_A Aspartate transcarbamoy 21.7 1.2E+02 0.0041 23.9 4.7 62 52-119 154-216 (308)
113 2y8u_A Chitin deacetylase; hyd 21.0 1.1E+02 0.0037 22.5 4.1 35 53-87 182-217 (230)
114 2kgw_A Outer membrane protein 20.9 1.1E+02 0.0037 20.3 3.8 44 40-83 43-94 (129)
115 3mw8_A Uroporphyrinogen-III sy 20.7 1.4E+02 0.0047 21.6 4.6 41 74-114 17-58 (240)
116 3loq_A Universal stress protei 20.7 1E+02 0.0035 22.6 3.9 64 66-131 212-289 (294)
117 4gi5_A Quinone reductase; prot 20.6 1E+02 0.0035 23.8 4.0 32 56-87 27-59 (280)
118 3n9r_A Fructose-bisphosphate a 20.5 63 0.0022 25.7 2.8 56 65-122 56-113 (307)
119 3i09_A Periplasmic branched-ch 20.5 2.4E+02 0.0081 21.1 6.1 46 40-86 128-173 (375)
120 4evq_A Putative ABC transporte 20.5 2.4E+02 0.0083 20.9 6.1 46 39-85 138-183 (375)
121 3hut_A Putative branched-chain 20.4 2E+02 0.0068 21.2 5.6 45 40-85 127-171 (358)
No 1
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase, phosphotransferase; HET: SEP; 2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Probab=100.00 E-value=5.5e-36 Score=259.30 Aligned_cols=120 Identities=51% Similarity=0.828 Sum_probs=106.2
Q ss_pred eeeeeecccCCCCCCCcCCccccCCcc-cchHHHHHHHHHHHHHhccc-CCCCeEEEEecCCcCHHHHHHHHHHHHHHCC
Q psy5981 4 KSVTVETKVFDGQKPGTSGLRKPTKTF-QQEHYTENFIQSILTALGDK-LKGSVLVVGGDGRYFGDVAVDKIIKISAANG 81 (131)
Q Consensus 4 ~~~~~~~~~~~~~~FGT~GiRg~~g~~-~~~~~~~~~~~ai~~~~~~~-~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~G 81 (131)
++++|+|.||.+|+|||+|+||.++.| .+.+++.+|+++++.+++.. .++.+|+||||+|++|++|+++++++|+++|
T Consensus 2 ~~~~~~~~~~~~~~fGTsGiRG~v~~~~~~~~~t~~f~~~l~~A~g~~~~~g~~VvVG~D~R~~s~~~~~~~a~~l~a~G 81 (561)
T 3pmg_A 2 KIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIVRIAAANG 81 (561)
T ss_dssp CCEEEECCCCSCCCCBTTBEEEEHHHHHHSTTHHHHHHHHHHHTSCGGGTTTCEEEEEECCCTTHHHHHHHHHHHHHHTT
T ss_pred cceEEecccCCCCCCCCCCcCeeeCCCCCCcCccHHHHHHHHHHHHhhhcCCCEEEEEeCCCccHHHHHHHHHHHHHHCC
Confidence 578999999999999999999999876 45577888888888877532 2346799999999999999999999999999
Q ss_pred CcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCC---CCCC
Q psy5981 82 VAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPS---RTIR 123 (131)
Q Consensus 82 i~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~---~~ng 123 (131)
++|+++.++|++|||+++|+++++ +++||||||||||+ +|||
T Consensus 82 v~V~~~~~~g~~pTP~vs~av~~~~a~gGImITASHNP~~~~~~nG 127 (561)
T 3pmg_A 82 IGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFG 127 (561)
T ss_dssp CCEEEEEEEEECCHHHHHHHHHHHTCSEEEEECCTTSCCSTTSEEE
T ss_pred CEEEEecCCCccCHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCcce
Confidence 999998555899999999999999 99999999999995 4666
No 2
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=100.00 E-value=1.7e-34 Score=245.29 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=98.1
Q ss_pred CCCCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCcccc
Q psy5981 15 GQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILS 94 (131)
Q Consensus 15 ~~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~P 94 (131)
...|||+||||++++.++++++.+++++++.++.+..+.++|+||||+|.+|++|+++++++|+++|++|+++ |++|
T Consensus 23 ~~~FGt~GiRG~~~~~lt~~~v~~~g~a~~~~l~~~~~~~~VvIG~D~R~ss~~~~~a~a~gl~s~Gi~V~~~---g~~p 99 (469)
T 3pdk_A 23 GKYFGTDGVRGVANKELTPELAFKIGRFGGYVLTKDTDRPKVIIGRDTRISGHMLEGALVAGLLSTGAEVMRL---GVIS 99 (469)
T ss_dssp CCSCBTTBEEEEBTTTBCHHHHHHHHHHHHHHHHTTCSSCEEEEEECSCTTHHHHHHHHHHHHHTTTCEEEEE---EECC
T ss_pred ccccCCCCeeeecCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHHCCCEEEEe---CCCC
Confidence 4679999999999988888889999999999886433356799999999999999999999999999999998 8999
Q ss_pred chHHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 95 TPAVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 95 TP~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
||+++|+++++ +++||||||||||++|||
T Consensus 100 TP~l~fav~~~~a~~GImITASHNP~~~NG 129 (469)
T 3pdk_A 100 TPGVAYLTKALDAQAGVMISASHNPVQDNG 129 (469)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSCTTEEE
T ss_pred hHHHHHHHHhcCCCeEEEEEeCCCcchhCc
Confidence 99999999999 999999999999999998
No 3
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=100.00 E-value=4.9e-34 Score=240.72 Aligned_cols=104 Identities=22% Similarity=0.264 Sum_probs=96.3
Q ss_pred CCCCcCCccccCCc-ccchHHHHHHHHHHHHHhcccCCCC-eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccc
Q psy5981 16 QKPGTSGLRKPTKT-FQQEHYTENFIQSILTALGDKLKGS-VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGIL 93 (131)
Q Consensus 16 ~~FGT~GiRg~~g~-~~~~~~~~~~~~ai~~~~~~~~~~~-~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~ 93 (131)
..|||+||||++++ .++++++.+++++++.++.+.. .+ +|+||||+|.+|++|+++++++|+++|++|+++ |++
T Consensus 3 ~~FGt~GiRG~~~~g~lt~~~v~~~g~a~~~~l~~~~-~~~~VvVG~D~R~ss~~l~~a~~~gl~s~G~~V~~~---g~~ 78 (443)
T 3i3w_A 3 KYFGTDGIRGEVANSTITVEFTQKLGNAVGSLINQKN-YPKFVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDL---GVV 78 (443)
T ss_dssp CCCCSSSSEEEBSSSSBSHHHHHHHHHHHHHHHHHTT-CCSEEEEEECSCTTHHHHHHHHHHHHHHHTCEEEEE---EEC
T ss_pred cccCCCCeeEEeCCCCCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEeCCCcCHHHHHHHHHHHHHHCCCeEEEe---CCC
Confidence 46999999999998 7888999999999999886432 34 799999999999999999999999999999998 899
Q ss_pred cchHHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 94 STPAVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 94 PTP~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
|||+++|+++++ +++||||||||||++|||
T Consensus 79 pTP~~~~av~~~~a~~GImITASHNP~~~NG 109 (443)
T 3i3w_A 79 PTPVVAFMTVKHRAAAGFVITASHNKFTDNG 109 (443)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCTTSCTTEEE
T ss_pred CHHHHHHHHHhcCCCeEEEEEECCCCchhCe
Confidence 999999999999 999999999999999998
No 4
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.9e-34 Score=239.77 Aligned_cols=102 Identities=25% Similarity=0.242 Sum_probs=95.7
Q ss_pred CCCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccc
Q psy5981 16 QKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILST 95 (131)
Q Consensus 16 ~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PT 95 (131)
..|||+||||+++..++++++.+++++++.++.+ +++|+||||+|.+|++|+++++++|+++|++|+++ |++||
T Consensus 3 ~~Fgt~GiRG~~~~~lt~~~v~~~~~a~~~~l~~---~~~VvIG~D~R~ss~~~~~a~a~gl~~~G~~V~~~---g~~pT 76 (455)
T 2f7l_A 3 KLFGTDGVRGIVNKELTPELVLKLSKAIGTFFGK---NSKILVGRDVRAGGDMLVKIVEGGLLSVGVEVYDG---GMAPT 76 (455)
T ss_dssp SSCCSSSEEEEBTTTBCHHHHHHHHHHHHHHHCT---TCEEEEEECSCTTHHHHHHHHHHHHHHTTCEEEEE---EECCH
T ss_pred CcccCCCeeeecCCCcCHHHHHHHHHHHHHHHcc---CCeEEEEECCCCCHHHHHHHHHHHHHHCCCcEEEc---CCCCc
Confidence 4699999999999888889899999999998853 35799999999999999999999999999999887 89999
Q ss_pred hHHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 96 PAVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 96 P~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
|+++|+++++ +++||||||||||++|||
T Consensus 77 P~~~~av~~~~~~~GImITASHNP~~~NG 105 (455)
T 2f7l_A 77 PALQYAVKTLGYDGGVVITASHNPAPYNG 105 (455)
T ss_dssp HHHHHHHHHHCCSEEEEECCTTSCTTEEE
T ss_pred HHHHHHHHhcCCCeEEEEEcCCCChHHCE
Confidence 9999999999 999999999999999998
No 5
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.8e-34 Score=239.81 Aligned_cols=105 Identities=26% Similarity=0.247 Sum_probs=97.2
Q ss_pred CCCCcCCccccCCcccchHHHHHHHHHHHHHhcccC-CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCcccc
Q psy5981 16 QKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKL-KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILS 94 (131)
Q Consensus 16 ~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~-~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~P 94 (131)
..|||+||||++++.++++++.+++++++.++.+.. .+++|+||||+|.+|++|+++++++|+++|++|+++ |++|
T Consensus 3 ~~Fgt~GiRG~~~~~lt~~~v~~~~~a~~~~l~~~~~~~~~VvIG~D~R~ss~~l~~a~~~gl~~~G~~V~~~---g~~p 79 (455)
T 1wqa_A 3 KLFGTFGVRGIANEKITPEFAMKIGMAFGTLLKREGRKKPLVVVGRDTRVSGEMLKEALISGLLSVGCDVIDV---GIAP 79 (455)
T ss_dssp TTCBTTBEEEEBTTTBCHHHHHHHHHHHHHHHHHTTCSSCEEEEEECSCTTHHHHHHHHHHHHHHTTCEEEEE---EECC
T ss_pred cccCCCceeeecCCCcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcCHHHHHHHHHHHHHHcCCeEEEe---CCCC
Confidence 479999999999988889999999999999886431 245699999999999999999999999999999998 8999
Q ss_pred chHHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 95 TPAVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 95 TP~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
||+++|+++++ +++||||||||||++|||
T Consensus 80 TP~l~~~v~~~~~~~GimITASHNP~~~NG 109 (455)
T 1wqa_A 80 TPAVQWATKHFNADGGAVITASHNPPEYNG 109 (455)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSCTTEEE
T ss_pred hHHHHHHHHhcCCCEEEEEEeCCCChHHCe
Confidence 99999999999 999999999999999998
No 6
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=100.00 E-value=6.7e-34 Score=240.74 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=97.9
Q ss_pred CCCCCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccc
Q psy5981 14 DGQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGIL 93 (131)
Q Consensus 14 ~~~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~ 93 (131)
..+.|||+||||+++...+++++.+++++++.++.+.. +++|+||||+|.+|++|+++++++|+++|++|++. .|++
T Consensus 10 ~~l~FGt~GiRG~~~~~lt~~~v~~~~~a~~~~l~~~~-~~~VvVG~D~R~ss~~~~~a~a~gl~~~G~~V~~~--~g~~ 86 (464)
T 1tuo_A 10 APIRFGTEGFRGVIAREFTFATLHRLAEAYGRHLLERG-GGLVVVGHDTRFLADAFARALSGHLAGMGLKVVLL--KGPV 86 (464)
T ss_dssp CCCCCCSSSEEEEBTTTBCHHHHHHHHHHHHHHHHHTT-CCEEEEEECSSTTHHHHHHHHHHHHHHHTCEEEEE--SSSC
T ss_pred CCccccCCCcceecCCCcCHHHHHHHHHHHHHHHHHhC-CCeEEEeeCCCCCHHHHHHHHHHHHHHCCCeEEEc--CCCC
Confidence 56899999999999987788889999999999886432 45799999999999999999999999999999754 3899
Q ss_pred cchHHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 94 STPAVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 94 PTP~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
|||+++|+++++ +++||||||||||++|||
T Consensus 87 pTP~~~~av~~~~~~~GImITASHNP~~~NG 117 (464)
T 1tuo_A 87 PTPLLSFAVRHLKAAGGAMLTASHNPPQYLG 117 (464)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCTTSCTTEEE
T ss_pred CHHHHHHHHHHhCCCceEEEcCCCCCchHCC
Confidence 999999999999 999999999999999998
No 7
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=100.00 E-value=9.1e-34 Score=239.47 Aligned_cols=108 Identities=17% Similarity=0.093 Sum_probs=98.7
Q ss_pred cCCCCCCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCc
Q psy5981 12 VFDGQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNG 91 (131)
Q Consensus 12 ~~~~~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g 91 (131)
+++...|||+||||+++..++++++.+++++++.++.+. +.++|+||||+|.+|++|+++++++|+++|++|+++ |
T Consensus 8 ~~~~~~Fgt~GiRG~~~~~~t~~~~~~i~~a~~~~l~~~-~~~~VvVG~D~R~ss~~l~~a~~~gl~a~G~~V~~~---g 83 (463)
T 1p5d_X 8 TLPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLAR-GEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDV---G 83 (463)
T ss_dssp -CCGGGBCSSSEEEEBTTTBCHHHHHHHHHHHHHHHHHT-TCCEEEEEECSCTTHHHHHHHHHHHHHTBTCEEEEE---E
T ss_pred cccccccCCCCcceeCCCCCCHHHHHHHHHHHHHHHHHc-CCCeEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEe---C
Confidence 466789999999999998888888999999999888642 245799999999999999999999999999999988 8
Q ss_pred cccchHHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 92 ILSTPAVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 92 ~~PTP~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
++|||+++|+++++ +++||||||||||++|||
T Consensus 84 ~~pTP~l~~av~~~~~~~GImITASHNP~~~NG 116 (463)
T 1p5d_X 84 MVPTPVLYYAANVLEGKSGVMLTGSHNPPDYNG 116 (463)
T ss_dssp ECCHHHHHHHHHHSSCSEEEEECCTTSCTTEEE
T ss_pred CCChHHHHHHHHhcCCCeEEEEccCCCCcccce
Confidence 99999999999999 999999999999999996
No 8
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A {Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Probab=100.00 E-value=7.3e-34 Score=246.49 Aligned_cols=119 Identities=27% Similarity=0.281 Sum_probs=103.4
Q ss_pred eeeeecccCCC----------CCCCcCCccccCC-cccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHH
Q psy5981 5 SVTVETKVFDG----------QKPGTSGLRKPTK-TFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKI 73 (131)
Q Consensus 5 ~~~~~~~~~~~----------~~FGT~GiRg~~g-~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~ 73 (131)
+.++.+++|+. +.|||+||||+++ ..++++.+.+++++++.++.+....++|+||||+|.+|+.+++.+
T Consensus 43 ~~~l~~~~~~~~~~~~~~~~r~~FGT~GiRG~~~~~~ln~~~v~~i~~A~a~~l~~~~~~~~VvVG~D~R~~S~~~~~~a 122 (570)
T 3na5_A 43 VAQLTAQYYVLKPEAGNAEHAVKFGTSGHRGSAGRHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISV 122 (570)
T ss_dssp HHHHHHHHHHCCCCTTCGGGSCCCBTTBEEECGGGTSSSHHHHHHHHHHHHHHHHHTTCCSCEEEEECSSTTHHHHHHHH
T ss_pred hHHHHHHHhccCCCcCCccccceecCCCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcccHHHHHHH
Confidence 44667778877 9999999999997 457788889999999988864322356999999999999999999
Q ss_pred HHHHHHCCCcEEEecCCccccchHHHHHHHHh------cCceEEEcCCCCCCCCCC
Q psy5981 74 IKISAANGVAKLIVGQNGILSTPAVSALIRKH------ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 74 a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~------~~~GImITASHNP~~~ng 123 (131)
+++|+++|++|+++.+.|++|||+++|+++++ +++||||||||||++|||
T Consensus 123 ~~~L~a~Gi~V~~~~d~g~~PTP~vsfav~~~~~~~~~~~~GImITASHNP~~~NG 178 (570)
T 3na5_A 123 LEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGG 178 (570)
T ss_dssp HHHHHHTTCCEEEEGGGCCCCHHHHHHHHHHHHHTCSSCCEEEEECCTTCCTTCEE
T ss_pred HHHHHHCCCEEEEeCCCCccChHHHHHHHHHhCCCccccceEEEEEeCCCChHHCc
Confidence 99999999999986445899999999999876 489999999999999998
No 9
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics; 2.52A {Thermus thermophilus}
Probab=100.00 E-value=2.7e-33 Score=239.67 Aligned_cols=115 Identities=23% Similarity=0.222 Sum_probs=98.3
Q ss_pred ecccCCCCCCCcCCcccc-CCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 9 ETKVFDGQKPGTSGLRKP-TKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 9 ~~~~~~~~~FGT~GiRg~-~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++..+..+.|||+||||+ ++...+++++.+++++++.++.+....++|+||||+|.+|++|+++++++|+++|++|+++
T Consensus 17 ~~~~~~~~~FGT~GiRG~~~~~~lt~~~v~~i~~a~~~~l~~~~~~~~VvIG~D~R~~S~~~~~~~~~gl~a~Gi~V~~~ 96 (524)
T 2z0f_A 17 PQNPLEGVRFGTSGHRGSSLKATFTEAHVLAIAQAIAELRPSFGATGPLFLAKDTHALSEPAWATALSVFAAHGIEVRVE 96 (524)
T ss_dssp TTCGGGSCCEETTEEEECGGGTSSCHHHHHHHHHHHHHHTTTTTCCSCEEEEECSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCccCcCcccCccccCCcccCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcchHHHHHHHHHHHHHCCCEEEEe
Confidence 455666799999999996 5766778888999999998876432234699999999999999999999999999999998
Q ss_pred cCCccccchHHHHHHHHh-c-----CceEEEcCCCCCCCCCC
Q psy5981 88 GQNGILSTPAVSALIRKH-I-----LGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 88 ~~~g~~PTP~vsfav~~~-~-----~~GImITASHNP~~~ng 123 (131)
.+.|++|||+++|+++++ + ++||||||||||++|||
T Consensus 97 ~~~G~~pTP~l~~av~~~~~~~~~a~~GImITASHNP~~~NG 138 (524)
T 2z0f_A 97 ADGDYTPTPLVSLAILEHNAHHEAKADGVLLTPSHNPPEDGG 138 (524)
T ss_dssp SSSSCCCHHHHHHHHHHHHTTCSSCCEEEEECC--CCTTCEE
T ss_pred CCCCccCcHHHHHHHHHhCCCccccceEEEEcCCCCCchhCC
Confidence 555899999999999998 5 89999999999999998
No 10
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis, isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Probab=100.00 E-value=1.6e-33 Score=243.73 Aligned_cols=118 Identities=46% Similarity=0.706 Sum_probs=104.9
Q ss_pred eeeecccCCCCCCCcCCccccCCcccchHHHHHHHHHHHHHhccc-CCCC-eEEEEecCCcCHHHHHHHHHHHHHHCCCc
Q psy5981 6 VTVETKVFDGQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDK-LKGS-VLVVGGDGRYFGDVAVDKIIKISAANGVA 83 (131)
Q Consensus 6 ~~~~~~~~~~~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~-~~~~-~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~ 83 (131)
-..++.+|++++|||+||||+++++++++++.+++++++.++.+. ..++ +|+||||+|.+|++|+++++++|+++|++
T Consensus 9 ~~~~~~~~~~~~FGT~GiRG~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~VvIG~D~R~sS~~~a~~~a~~l~a~Gi~ 88 (572)
T 1kfi_A 9 RVQVTQPYAGQKPGTSGLRKKVSEATQPNYLENFVQSIFNTLRKDELKPKNVLFVGGDGRYFNRQAIFSIIRLAYANDIS 88 (572)
T ss_dssp EEEECCCCTTCCCBTTBEEEEHHHHTSTTHHHHHHHHHHHHSCGGGSSSSCEEEEEECCCTTHHHHHHHHHHHHHHTTCS
T ss_pred ccccCCcCccCCccCCccceEecceecHHHHHHHHHHHHHHHhhhccCCCCEEEEEecCCCCHHHHHHHHHHHHHHCCCE
Confidence 346899999999999999999998888999999999999988632 2234 79999999999999999999999999999
Q ss_pred EEEecCCccccchHHHHHHHHh------cCceEEEcCCCCCC----CCCC
Q psy5981 84 KLIVGQNGILSTPAVSALIRKH------ILGRLVKVPSSNPS----RTIR 123 (131)
Q Consensus 84 V~~~~~~g~~PTP~vsfav~~~------~~~GImITASHNP~----~~ng 123 (131)
|+++.+.|++|||+++|+++++ +++||||||||||+ +|||
T Consensus 89 V~~~~~~G~~pTP~l~fav~~~n~~~~~a~~GImITASHNP~~~~~~~NG 138 (572)
T 1kfi_A 89 EVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGIILTASHNPGGKEHGDFG 138 (572)
T ss_dssp EEEEEGGGCBCHHHHHHHHHHHHHHSCCEEEEEEECCTTSCCSTTTCEEE
T ss_pred EEEecCCCCCChHHHHHHHHHhccccCCcceEEEEeCCCCCCCcCcccCc
Confidence 9988555899999999999986 58999999999995 3887
No 11
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=100.00 E-value=2.3e-33 Score=239.51 Aligned_cols=110 Identities=18% Similarity=0.170 Sum_probs=99.1
Q ss_pred cccCCCCCCCcCCccccCCcccchHHHHHHHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecC
Q psy5981 10 TKVFDGQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQ 89 (131)
Q Consensus 10 ~~~~~~~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~ 89 (131)
+.-+....|||+||||++++.++++++.+++++++.++.+. +.++|+||||+|.+|++|+++++++|+++|++|+++
T Consensus 20 ~~~~~~~~Fgt~GiRG~~~~~lt~~~~~~ig~A~~~~l~~~-~~~~VvVG~D~R~ss~~~~~a~a~gl~a~Gi~V~~~-- 96 (485)
T 3uw2_A 20 GSMISQSIFKAYDIRGVIGKTLDADVARSIGRAFGSEVRAQ-GGDAVVVARDGRLSGPELVGALADGLRAAGVDVVDV-- 96 (485)
T ss_dssp --CCCGGGBCSSSEEEEBTTTBCHHHHHHHHHHHHHHHHHT-TCCEEEEEECSCTTHHHHHHHHHHHHHHTTCEEEEE--
T ss_pred cccccccccccCCEEEEeCCCCCHHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCHHHHHHHHHHHHHHCCCEEEEe--
Confidence 34466678999999999998888888999999999888642 346799999999999999999999999999999988
Q ss_pred CccccchHHHHHHH--------Hh-cCceEEEcCCCCCCCCCC
Q psy5981 90 NGILSTPAVSALIR--------KH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 90 ~g~~PTP~vsfav~--------~~-~~~GImITASHNP~~~ng 123 (131)
|++|||+++|+++ ++ +++||||||||||++|||
T Consensus 97 -g~~pTP~l~~av~~~~~~~~~~~~~~~GImITASHNP~~~NG 138 (485)
T 3uw2_A 97 -GMVPTPVGYFAASVPLALSGGERRVDSCIVVTGSHNPPDYNG 138 (485)
T ss_dssp -EECCHHHHHHHTTSCEEETTEEECCCCEEEECCTTSCTTEEE
T ss_pred -CCCChHHHHHHHhccccccccccCCCeEEEEEeCCCCcccce
Confidence 8999999999999 88 999999999999999998
No 12
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=100.00 E-value=3e-33 Score=237.64 Aligned_cols=105 Identities=23% Similarity=0.202 Sum_probs=93.7
Q ss_pred CCCCCCcCCccccCCcccchHHHHHHHHHHHHHhccc---CCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCC
Q psy5981 14 DGQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDK---LKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQN 90 (131)
Q Consensus 14 ~~~~FGT~GiRg~~g~~~~~~~~~~~~~ai~~~~~~~---~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~ 90 (131)
+.+.|||+||||+++ ..+++.+.+++++++.++.+. ...++|+||||+|.+|++|+++++++|+++|++|+++
T Consensus 8 ~~~~FGT~GiRG~~~-~lt~~~v~~~~~a~a~~l~~~~~~~~~~~VvVG~D~R~ss~~~~~a~~~gl~a~Gi~V~~~--- 83 (481)
T 4hjh_A 8 NSLKFGTSGLRGLAV-ELNGLPAYAYTMAFVQMLAAKGQLQKGDKVFVGRDLRPSSPDIAALAMGAIEDAGFTPVNC--- 83 (481)
T ss_dssp CCCEECSSSEEEEHH-HHTTHHHHHHHHHHHHHHHHTTSCCTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCEEEEE---
T ss_pred ccCcccCCCcceecC-CCCHHHHHHHHHHHHHHHHhhccccCCCeEEEeecCCcCHHHHHHHHHHHHHHCCCEEEEe---
Confidence 467999999999994 456677889999999888532 2346799999999999999999999999999999987
Q ss_pred ccccchHHHHHHHHh-cCceEEEcCCCCCCCCCC
Q psy5981 91 GILSTPAVSALIRKH-ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 91 g~~PTP~vsfav~~~-~~~GImITASHNP~~~ng 123 (131)
|++|||+++|+++++ + +||||||||||++|||
T Consensus 84 g~~pTP~l~fav~~~~~-~GImITASHNP~~~NG 116 (481)
T 4hjh_A 84 GVLPTPALSYYAMGAKA-PSIMVTGSHIPDDRNG 116 (481)
T ss_dssp EECCHHHHHHHHHHTTC-CEEEECCTTSCTTEEE
T ss_pred CCcCcHHHHHHHHhcCC-ceEEEecCCCCCCCCC
Confidence 899999999999999 7 7999999999999998
No 13
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=99.20 E-value=7e-12 Score=107.90 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=17.8
Q ss_pred HHHh--cCceEEEcCCCCCCCCCC
Q psy5981 102 IRKH--ILGRLVKVPSSNPSRTIR 123 (131)
Q Consensus 102 v~~~--~~~GImITASHNP~~~ng 123 (131)
++++ +++||||||||||++|||
T Consensus 51 ~~~~~~~~~GImITASHNP~~dNG 74 (544)
T 2dka_A 51 SKYLQGKTVGVMITASHNPPEDNG 74 (544)
T ss_dssp HHHTTTCEEEEEECCC-CCTTEEE
T ss_pred HHhcCCcCceEEEeCCCCCcccCc
Confidence 3554 579999999999999997
No 14
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=97.94 E-value=1.2e-05 Score=69.10 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=45.2
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHC-CCcEEEecCCccccchHHHHHHHHh
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAAN-GVAKLIVGQNGILSTPAVSALIRKH 105 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~-Gi~V~~~~~~g~~PTP~vsfav~~~ 105 (131)
.|+||||+|.+|+.+.+++.++|.+. |.+|..+ |.++||+++|+++..
T Consensus 134 ~v~vg~d~r~s~~~l~~al~~gl~~~~G~~v~~~---G~~ttP~l~~~v~~~ 182 (544)
T 2dka_A 134 NVVIARDSRESSPALSMATIDGFQSVPNTKYQDF---GLFTTPELHYVTRTL 182 (544)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHHHTSSSEEEEEE---EECCHHHHHHHHHHH
T ss_pred eEEeccCCCCCCHHHHHHHHhhhhhhcCCeEEEe---cccccchheeeeeec
Confidence 58999999999999999999999999 9999887 899999999999877
No 15
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=88.46 E-value=2.3 Score=34.89 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=43.5
Q ss_pred CCCeEEEEecCCcCH-HHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEE-cCCCC
Q psy5981 52 KGSVLVVGGDGRYFG-DVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVK-VPSSN 117 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s-~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImI-TASHN 117 (131)
.+++|+|-|++.+.+ +.+|++++++|.+.|+++..+.-.. +..+-++..+... -..|+++ |.+.|
T Consensus 264 ~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d-~~~~~~s~i~~~i~~~~~ivlGspT~~ 331 (410)
T 4dik_A 264 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSD-EERPAISEILKDIPDSEALIFGVSTYE 331 (410)
T ss_dssp CTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECS-SCCCCHHHHHHHSTTCSEEEEEECCTT
T ss_pred cccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEecc-CCCCCHHHHHHHHHhCCeEEEEeCCcC
Confidence 345799999999766 4579999999999999976431112 2333457766666 3345544 65555
No 16
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=86.40 E-value=3.1 Score=29.30 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=41.4
Q ss_pred CCeEEEEecCCc-CHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh--cCceEEEcCCCC
Q psy5981 53 GSVLVVGGDGRY-FGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH--ILGRLVKVPSSN 117 (131)
Q Consensus 53 ~~~vvVG~D~R~-~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~--~~~GImITASHN 117 (131)
+++|+|-|++.. +.+.+|+.++++|.+.|++|..+ .+..++-.+...... +++=|+.|..++
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~---~~~~~~~~~~~~~~~~~~d~ii~Gspty~ 68 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVV---DLGAAVDLQELRELVGRCTGLVIGMSPAA 68 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEE---ESSSCCCHHHHHHHHHTEEEEEEECCBTT
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEE---ECcCcCCHHHHHHHHHhCCEEEEEcCcCC
Confidence 357999999985 67889999999999999987665 233331234333333 455556666654
No 17
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=85.71 E-value=3.4 Score=30.22 Aligned_cols=60 Identities=8% Similarity=0.022 Sum_probs=43.4
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCc--cccchHHHHHHH----Hh-cCceEEEcCC
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNG--ILSTPAVSALIR----KH-ILGRLVKVPS 115 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g--~~PTP~vsfav~----~~-~~~GImITAS 115 (131)
-+|+||-|. .+-++.+.+.+-|.+.|++|.+++... -+.=|-.+..+- .. ++-||+|-+|
T Consensus 13 ~~i~igsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 79 (155)
T 1o1x_A 13 VKIAIASDH--AAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGT 79 (155)
T ss_dssp CEEEEEECS--TTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred eeEEEeeCc--hHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 469999995 678899999999999999999984211 223455555543 33 5679998766
No 18
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=83.91 E-value=3.6 Score=30.20 Aligned_cols=59 Identities=19% Similarity=0.042 Sum_probs=42.0
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCc---cccchHHHHHH----HHh-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNG---ILSTPAVSALI----RKH-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g---~~PTP~vsfav----~~~-~~~GImITAS 115 (131)
+|+||-|. .+..+.+.+.+-|.+.|++|++++... -+.=|-.+..+ ... ++-||.|-+|
T Consensus 5 kIaigsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 71 (162)
T 2vvp_A 5 RVYLGADH--AGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGS 71 (162)
T ss_dssp EEEEEECH--HHHHHHHHHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCC
Confidence 58899984 678888899999999999999984211 22345444444 333 6779998766
No 19
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=83.88 E-value=2.9 Score=30.31 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=40.7
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCC--ccccchHHHHHHH----Hh-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQN--GILSTPAVSALIR----KH-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~--g~~PTP~vsfav~----~~-~~~GImITAS 115 (131)
+|+||-|. .+.++.+.+.+-|.+.|++|.+++.. ..+.=|-.+..+- .. ++-||.|-+|
T Consensus 3 kIaigsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 68 (149)
T 2vvr_A 3 KIAFGCDH--VGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGT 68 (149)
T ss_dssp EEEEEECT--TGGGGHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCC
Confidence 48899995 45667777889999999999998421 1233455555543 33 5679998766
No 20
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=82.17 E-value=6.4 Score=27.54 Aligned_cols=58 Identities=22% Similarity=0.285 Sum_probs=35.8
Q ss_pred EEEEecCCc-CHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh--cCceEEEcCCCC
Q psy5981 56 LVVGGDGRY-FGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH--ILGRLVKVPSSN 117 (131)
Q Consensus 56 vvVG~D~R~-~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~--~~~GImITASHN 117 (131)
|+|-|.+.. +.+.+|+.++++|.+.|++|..+. +.-++ ........ +++=|+.|..++
T Consensus 3 v~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~---~~~~~-~~~~~~~~~~~d~ii~Gspty~ 63 (161)
T 3hly_A 3 VLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVD---LRAVD-PQELIEAVSSARGIVLGTPPSQ 63 (161)
T ss_dssp EEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEE---TTTCC-HHHHHHHHHHCSEEEEECCBSS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEE---CCCCC-HHHHHHHHHhCCEEEEEcCCcC
Confidence 677788774 677888999999988888875552 22222 23333322 555566666653
No 21
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=80.74 E-value=8.4 Score=27.82 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=42.3
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCc--cccchHHHHHHHH----h-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNG--ILSTPAVSALIRK----H-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g--~~PTP~vsfav~~----~-~~~GImITAS 115 (131)
+|+||-|. .+-++.+.+.+-|.+.|++|.+++... .+.=|-.+..+-+ . ++-||.|-+|
T Consensus 2 kI~igsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 67 (149)
T 3he8_A 2 KIGIGSDH--GGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGT 67 (149)
T ss_dssp EEEEEECG--GGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred EEEEEECc--hhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 48899885 578888999999999999999984221 2233666555433 3 6779998766
No 22
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=77.38 E-value=11 Score=27.81 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=42.8
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCc--cccchHHHHHHHH----h-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNG--ILSTPAVSALIRK----H-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g--~~PTP~vsfav~~----~-~~~GImITAS 115 (131)
+|+||-|. .+-++.+.+.+-|.+.|++|++++... -+.=|-.+..+-+ . ++-||.|-+|
T Consensus 22 kIaIgsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 87 (169)
T 3ph3_A 22 KIGIGSDH--GGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGT 87 (169)
T ss_dssp EEEEEECG--GGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred EEEEEeCc--hHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 59999996 567888999999999999999984221 2233666655433 3 6779998766
No 23
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=69.46 E-value=13 Score=27.30 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=41.5
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCc--cccchHHHHHH----HHh-cCceEEEcCC
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNG--ILSTPAVSALI----RKH-ILGRLVKVPS 115 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g--~~PTP~vsfav----~~~-~~~GImITAS 115 (131)
-+|+||-|. .+-++.+.+.+-|.+.|++|++++... -+.=|-.+..+ ... ++-||.|-+|
T Consensus 22 MkIaIgsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGT 88 (166)
T 3s5p_A 22 MKVAFASDH--GGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGT 88 (166)
T ss_dssp CEEEEEECG--GGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred eEEEEEECc--hHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCC
Confidence 369999996 578889999999999999999984211 22345555544 333 6779998766
No 24
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=68.85 E-value=9.6 Score=25.35 Aligned_cols=31 Identities=10% Similarity=-0.149 Sum_probs=22.2
Q ss_pred EEEecCCc-CHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 57 VVGGDGRY-FGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 57 vVG~D~R~-~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+|-|.+.. +.+.+|+.+++.|.+.|++|.++
T Consensus 2 ~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~ 33 (138)
T 5nul_A 2 KIVYWSGTGNTEKMAELIAKGIIESGKDVNTI 33 (138)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EEEEECCCchHHHHHHHHHHHHHHCCCeEEEE
Confidence 45666664 56777888888888888776554
No 25
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=67.92 E-value=21 Score=25.93 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=41.1
Q ss_pred CCeEEEE---ecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCC
Q psy5981 53 GSVLVVG---GDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSN 117 (131)
Q Consensus 53 ~~~vvVG---~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHN 117 (131)
+++|+++ .|...-+..+ ++..|..+|++|++++. -+|...+.-++++. .+ -|.+|++..
T Consensus 88 ~~~vll~~~~gd~H~iG~~~---va~~l~~~G~~v~~LG~--~vp~~~l~~~~~~~~~d-~v~lS~~~~ 150 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNL---VAMMLESGGFTVYNLGV--DIEPGKFVEAVKKYQPD-IVGMSALLT 150 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHH---HHHHHHHTTCEEEECCS--SBCHHHHHHHHHHHCCS-EEEEECCSG
T ss_pred CCEEEEEeCCCcccHHHHHH---HHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCCC-EEEEecccc
Confidence 3467766 4666555544 57779999999998853 47777777777777 44 477777644
No 26
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=66.96 E-value=11 Score=28.79 Aligned_cols=61 Identities=8% Similarity=0.075 Sum_probs=40.1
Q ss_pred eEEEEecCCcCHH--HHHHHHHHHHHHCCCcEEEecCCc-----cccchHHHHHH----HHh-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGD--VAVDKIIKISAANGVAKLIVGQNG-----ILSTPAVSALI----RKH-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~--~~a~~~a~~L~~~Gi~V~~~~~~g-----~~PTP~vsfav----~~~-~~~GImITAS 115 (131)
+|+||-|.-..-+ .+.+.+.+-|.+.|++|.+++... -+-=|-.+..+ ... ++-||.|-+|
T Consensus 5 kIaIgsDha~~lKn~ilk~~i~~~L~~~G~eV~D~G~~s~~d~~s~DYPd~a~~vA~~V~~g~~d~GIliCGT 77 (216)
T 2ppw_A 5 KIALINENSQASKNHIIYDSLKEATDKKGYQLFNYGMRGEEGESQLTYVQNGLMAAILLNTKAVDFVVTGCGT 77 (216)
T ss_dssp EEEECCCTTTGGGHHHHHHHHHHHHHHHTCEEEECSCCSCTTCCCCCHHHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred EEEEEcCChHhhhhhhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCC
Confidence 5899999883222 245788899999999999984211 12245555444 333 5678988776
No 27
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=65.83 E-value=13 Score=30.29 Aligned_cols=69 Identities=9% Similarity=0.042 Sum_probs=46.4
Q ss_pred CCCCe--EEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCC-ccccchHHHHHHHHh-cCceEEEcCCCCCC
Q psy5981 51 LKGSV--LVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQN-GILSTPAVSALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 51 ~~~~~--vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~-g~~PTP~vsfav~~~-~~~GImITASHNP~ 119 (131)
.++.+ |.+..|-++++-..++..+..++..|+++.++... ++.|-|.+--..++. ...|.-|+-+|||.
T Consensus 188 l~glkvvva~vGDl~~~~nrva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~ 260 (359)
T 1zq6_A 188 LRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDID 260 (359)
T ss_dssp CTTCEEEEEECCCSSCCCSHHHHHHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECCHH
T ss_pred ccCCeeEEEEEecccccccchHHHHHHHHHHcCCEEEEEcCccccCCCHHHHHHHHHHHHHcCCeEEEECCHH
Confidence 45667 66778988876677788888899999999998777 777776543222333 22234455556653
No 28
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=64.04 E-value=12 Score=25.71 Aligned_cols=52 Identities=10% Similarity=0.088 Sum_probs=32.6
Q ss_pred EEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCC
Q psy5981 58 VGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPS 115 (131)
Q Consensus 58 VG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITAS 115 (131)
++.|...-+..+ ++..|..+|++|++++ ..+|...+.-++++. ++. |.++++
T Consensus 11 ~~~d~HdiG~~~---v~~~l~~~G~~Vi~lG--~~~p~e~~v~~a~~~~~d~-v~lS~~ 63 (137)
T 1ccw_A 11 IGSDCHAVGNKI---LDHAFTNAGFNVVNIG--VLSPQELFIKAAIETKADA-ILVSSL 63 (137)
T ss_dssp ETTCCCCHHHHH---HHHHHHHTTCEEEEEE--EEECHHHHHHHHHHHTCSE-EEEEEC
T ss_pred CCCchhHHHHHH---HHHHHHHCCCEEEECC--CCCCHHHHHHHHHhcCCCE-EEEEec
Confidence 446766555544 4666899999998874 246666666667766 432 444443
No 29
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=59.94 E-value=40 Score=26.15 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=38.9
Q ss_pred CeEEEEecCCc-CHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh--cCceEEEcCCCC
Q psy5981 54 SVLVVGGDGRY-FGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH--ILGRLVKVPSSN 117 (131)
Q Consensus 54 ~~vvVG~D~R~-~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~--~~~GImITASHN 117 (131)
.+++|.|.+.. +.+.+|+.+++.|.+.|+++..+ .+...+. ....... +++=|+.|..+|
T Consensus 252 ~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~---~~~~~~~-~~~~~~~~~~d~ii~g~p~y~ 314 (398)
T 1ycg_A 252 AKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLF---KLSVSDR-NDVIKEILDARAVLVGSPTIN 314 (398)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEE---EGGGSCH-HHHHHHHHHCSEEEEECCCBT
T ss_pred CeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEE---ECCCCCH-HHHHHHHHHCCEEEEECCccC
Confidence 56888888884 46778999999999999887655 2333332 2222222 565566666654
No 30
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=57.37 E-value=26 Score=26.04 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=41.8
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHH--CCCcEEEecCCc--cccchHHHHHHHH----h-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAA--NGVAKLIVGQNG--ILSTPAVSALIRK----H-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~--~Gi~V~~~~~~g--~~PTP~vsfav~~----~-~~~GImITAS 115 (131)
+|+||-|. .+-++.+.+.+-|.+ .|++|++++... -+.=|-.+..+-+ . ++-||.|-+|
T Consensus 24 kIaIgsDh--aG~~lK~~i~~~L~~~~~G~eV~D~G~~s~~s~DYPd~a~~vA~~V~~g~~d~GIliCGT 91 (179)
T 3k7p_A 24 RVAIGTDH--PAFAIHENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVARKEVEFGVLAAGS 91 (179)
T ss_dssp EEEEEECT--GGGGGHHHHHHHHHHTCTTEEEEECSCSSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred EEEEEECc--hHHHHHHHHHHHHHhcCCCCeEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEccC
Confidence 59999996 456777888899999 999999984221 2234666555433 3 6779998766
No 31
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=56.34 E-value=34 Score=24.60 Aligned_cols=59 Identities=8% Similarity=-0.041 Sum_probs=42.7
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCc---cccchHHHHHHHHh---cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNG---ILSTPAVSALIRKH---ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g---~~PTP~vsfav~~~---~~~GImITAS 115 (131)
+|+||-|. .+-++.+.+.+-|.+.|++|++++... -+.=|-.+..+-+. ++-||.|-+|
T Consensus 9 kI~igsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~d~GIliCGT 73 (148)
T 4em8_A 9 RVFLSSDH--AGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVSDTSFGVLICGT 73 (148)
T ss_dssp EEEEEECG--GGHHHHHHHHHHHHHTTCEEEECCCCTTCSCCCGGGGTHHHHTTCBTTBEEEEEESS
T ss_pred EEEEEECc--hhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCeEEEEccC
Confidence 69999995 578889999999999999999984211 22346666555443 4668888665
No 32
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=54.39 E-value=20 Score=25.40 Aligned_cols=57 Identities=12% Similarity=0.038 Sum_probs=37.5
Q ss_pred CCeEEEE---ecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCC
Q psy5981 53 GSVLVVG---GDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPS 115 (131)
Q Consensus 53 ~~~vvVG---~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITAS 115 (131)
+++|+++ .|...-+..+ ++..|..+|++|++++ ..+|...+.-++++. ++ -|.++++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~---va~~l~~~G~eVi~lG--~~~p~e~lv~aa~~~~~d-iV~lS~~ 78 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKV---VARALRDAGFEVVYTG--LRQTPEQVAMAAVQEDVD-VIGVSIL 78 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHH---HHHHHHHTTCEEECCC--SBCCHHHHHHHHHHTTCS-EEEEEES
T ss_pred CCEEEEEeCCCCccHHHHHH---HHHHHHHCCCEEEECC--CCCCHHHHHHHHHhcCCC-EEEEEee
Confidence 3566544 5887777655 4666999999999873 246666666677776 44 3555554
No 33
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=53.38 E-value=22 Score=29.04 Aligned_cols=66 Identities=18% Similarity=0.053 Sum_probs=44.0
Q ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCcccc--chHHHHHHHHh-cCceEEEcCCCCCC
Q psy5981 51 LKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILS--TPAVSALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 51 ~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~P--TP~vsfav~~~-~~~GImITASHNP~ 119 (131)
.++.+|++-.|.|. . .++..+.+++..|++|.++...++.| -|.+--.+++. ...|.-|+-+|+|.
T Consensus 178 l~glkva~vGD~~n-n--va~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~ 246 (365)
T 4amu_A 178 LKNKKIVFIGDYKN-N--VGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKI 246 (365)
T ss_dssp CTTCEEEEESSTTS-H--HHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHH
T ss_pred CCCCEEEEECCCCc-c--hHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHH
Confidence 34567887789984 2 57888888999999999997777888 66443223333 22344455556664
No 34
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=52.88 E-value=24 Score=23.11 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=29.3
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++|+|+.|....|+...+.+++.....|.+++++
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll 40 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQIGARLSLI 40 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEE
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEE
Confidence 5799999999999999988888877778887665
No 35
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=51.80 E-value=28 Score=22.56 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=25.4
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++|+|+.|....|+...+.+++.....|.+++++
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll 36 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSII 36 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEE
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEE
Confidence 3688888888888887777777666667776555
No 36
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=51.79 E-value=29 Score=26.50 Aligned_cols=61 Identities=7% Similarity=0.035 Sum_probs=39.6
Q ss_pred eEEEEecCCcCHHH--HHHHHHHHHHHCCCcEEEec--CCc--cccchHHHHHHH----Hh-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDV--AVDKIIKISAANGVAKLIVG--QNG--ILSTPAVSALIR----KH-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~--~a~~~a~~L~~~Gi~V~~~~--~~g--~~PTP~vsfav~----~~-~~~GImITAS 115 (131)
+|+||-|.-+.-+. +.+.+.+-|.+.|++|++++ ... -+.=|-.+..+- .. ++-||+|-+|
T Consensus 5 kIaigsDha~~lK~~~i~~~l~~~L~~~G~eV~D~G~~~~~~~~~dYpd~a~~vA~~V~~g~~d~GIliCGT 76 (214)
T 3ono_A 5 KIALMMENSQAAKNAMVAGELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILLNSKAVDFVVTGCGT 76 (214)
T ss_dssp EEEECCCGGGGGGHHHHHHHHHHHHHHTTCEEEECSCSSTTSSCCCHHHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred EEEEECCCcHHHHChhHHHHHHHHHHHCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 58999997632222 34488899999999999984 111 233455555442 33 6779998776
No 37
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=50.92 E-value=16 Score=30.52 Aligned_cols=68 Identities=13% Similarity=0.084 Sum_probs=43.0
Q ss_pred CCCeEEEEecCCcC-HH--HHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCC
Q psy5981 52 KGSVLVVGGDGRYF-GD--VAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 52 ~~~~vvVG~D~R~~-s~--~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~ 119 (131)
++.+|.+-+|...+ ++ ..++..+.+++..|++|.++...++.|-|.+-=..++. ...|.-|+-+|+|.
T Consensus 187 ~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~ 258 (418)
T 2yfk_A 187 KGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMA 258 (418)
T ss_dssp TTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHH
T ss_pred CCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHH
Confidence 34567665664333 33 67778888899999999999877787777643222333 22344455557764
No 38
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=50.75 E-value=72 Score=23.49 Aligned_cols=59 Identities=19% Similarity=0.118 Sum_probs=41.5
Q ss_pred CCeEEEE---ecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEE--cCCCC
Q psy5981 53 GSVLVVG---GDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVK--VPSSN 117 (131)
Q Consensus 53 ~~~vvVG---~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImI--TASHN 117 (131)
.++|+++ .|...-+..+. +..|..+|++|++++. -+|...+.-++++. .+. |.+ |++..
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv---~~~l~~~G~~Vi~LG~--~vp~e~iv~~~~~~~~d~-v~l~~S~l~~ 156 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLV---TTMLGANGFQIVDLGV--DVLNENVVEEAAKHKGEK-VLLVGSALMT 156 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHH---HHHHHHTSCEEEECCS--SCCHHHHHHHHHHTTTSC-EEEEEECSSH
T ss_pred CCeEEEEeCCCChhHHHHHHH---HHHHHHCCCeEEEcCC--CCCHHHHHHHHHHcCCCE-EEEEchhccc
Confidence 4578776 58887777664 6669999999998842 36666666677777 543 777 66543
No 39
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=50.23 E-value=16 Score=30.16 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=42.1
Q ss_pred CCCeEEEEecCCcC-H--HHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCC
Q psy5981 52 KGSVLVVGGDGRYF-G--DVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 52 ~~~~vvVG~D~R~~-s--~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~ 119 (131)
++.+|++-.|-..+ + -..++..+.+++..|++|.++...|+.|-|.+--..++. ...|.-|+-+|+|.
T Consensus 190 ~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~ 261 (399)
T 3q98_A 190 KGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSME 261 (399)
T ss_dssp TTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHH
T ss_pred CCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHH
Confidence 44567766553322 2 245666777788889999998777777777643333333 23355566667764
No 40
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=49.56 E-value=26 Score=23.39 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=22.0
Q ss_pred eEEEEecCCc-CHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 55 VLVVGGDGRY-FGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 55 ~vvVG~D~R~-~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+++|-|.++. +++.+|+.+++.|.+.|++|.++
T Consensus 3 ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~ 36 (148)
T 3f6r_A 3 KVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLL 36 (148)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 3666666653 45677777888777777766544
No 41
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=49.14 E-value=19 Score=23.41 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=28.9
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++|+|+.|....|+...+.+++-....|.+++++
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll 36 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYIL 36 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4699999999999988888888777788888776
No 42
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=47.52 E-value=59 Score=24.19 Aligned_cols=59 Identities=15% Similarity=0.068 Sum_probs=42.5
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCC--CcEEEecCC---ccccchHHHHHHH----Hh-cCceEEEcCC
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANG--VAKLIVGQN---GILSTPAVSALIR----KH-ILGRLVKVPS 115 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~G--i~V~~~~~~---g~~PTP~vsfav~----~~-~~~GImITAS 115 (131)
+|+||-|. .+-++.+.+.+-|.+.| ++|++++.. .-+.=|-.+..+- .. ++-||+|-+|
T Consensus 31 kIaIgsDH--aG~~LK~~i~~~L~~~G~g~eV~D~G~~s~~e~~DYPd~a~~vA~~V~~ge~d~GIliCGT 99 (184)
T 3sgw_A 31 RLAIACDD--AGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDGKVDRALMICGT 99 (184)
T ss_dssp EEEEEECG--GGHHHHHHHHHHHTTCTTEEEEEECSCCSTTCCCCHHHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred EEEEEECc--hhHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCC
Confidence 59999995 57888899999999999 799998421 1223466655543 33 6779998766
No 43
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A
Probab=46.83 E-value=43 Score=24.43 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=26.4
Q ss_pred CCeEEEEecC---CcCHHHHHHHHHHHHHHCCCcEE
Q psy5981 53 GSVLVVGGDG---RYFGDVAVDKIIKISAANGVAKL 85 (131)
Q Consensus 53 ~~~vvVG~D~---R~~s~~~a~~~a~~L~~~Gi~V~ 85 (131)
.+.|++-||. +.........+...|.+.|++++
T Consensus 148 ~g~IiL~Hd~~~~~~~t~~al~~ii~~l~~~Gy~fv 183 (216)
T 2c71_A 148 DGTIILLHDVQPEPHPTPEALDIIIPTLKSRGYEFV 183 (216)
T ss_dssp TTBEEEEESCCSSSCCHHHHHHHHHHHHHHTTCEEC
T ss_pred CCcEEEEECCCCChHHHHHHHHHHHHHHHHCCCEEE
Confidence 4569999998 45667777888999999999854
No 44
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=46.21 E-value=25 Score=22.74 Aligned_cols=34 Identities=24% Similarity=0.158 Sum_probs=28.5
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++|+|+.|.-..|....+.+++-....|.+++++
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll 38 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEKLGAELDIL 38 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEE
Confidence 4699999999999988888877777778888776
No 45
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=46.00 E-value=25 Score=22.86 Aligned_cols=34 Identities=12% Similarity=0.124 Sum_probs=24.5
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++|+|+.|....|+...+.+++-....|.+++++
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll 39 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRHQANLTAL 39 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4688888888777777777776666667776554
No 46
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=45.95 E-value=53 Score=24.77 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=41.3
Q ss_pred CCeEEEE---ecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCC
Q psy5981 53 GSVLVVG---GDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNP 118 (131)
Q Consensus 53 ~~~vvVG---~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP 118 (131)
+++|+++ .|...-+..+ ++..|..+|++|++++. .+|...+.-++++. .+ -|.++++..+
T Consensus 123 ~~~vlla~~~gd~HdiG~~i---va~~L~~~G~~Vi~LG~--~vp~e~l~~~~~~~~~d-~V~lS~l~~~ 186 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNI---VTALLRANGYNVVDLGR--DVPAEEVLAAVQKEKPI-MLTGTALMTT 186 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHH---HHHHHHHTTCEEEEEEE--ECCSHHHHHHHHHHCCS-EEEEECCCTT
T ss_pred CCeEEEEeCCCCccHHHHHH---HHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCCC-EEEEEeeccC
Confidence 4567665 4666666544 56779999999998842 46777777777777 44 4777776544
No 47
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=45.85 E-value=36 Score=22.81 Aligned_cols=33 Identities=3% Similarity=-0.010 Sum_probs=26.4
Q ss_pred eEEEEecCC-cCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 55 VLVVGGDGR-YFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 55 ~vvVG~D~R-~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+++|-|.+. -+++.+|+.+++.|.+.|++|..+
T Consensus 3 ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~ 36 (147)
T 2hna_A 3 DITLISGSTLGGAEYVAEHLAEKLEEAGFTTETL 36 (147)
T ss_dssp SEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEECCchHHHHHHHHHHHHHHHCCCceEEe
Confidence 366777776 577889999999999999987765
No 48
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=45.85 E-value=1e+02 Score=23.81 Aligned_cols=61 Identities=10% Similarity=-0.009 Sum_probs=38.0
Q ss_pred CCeEEEEecCC-cCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh--cCceEEEcCCCC
Q psy5981 53 GSVLVVGGDGR-YFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH--ILGRLVKVPSSN 117 (131)
Q Consensus 53 ~~~vvVG~D~R-~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~--~~~GImITASHN 117 (131)
..+++|-|-+. -+++.+|+.+++.+.+.|+++..+. +...+.-. ..... +++=|+.|..+|
T Consensus 256 ~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~---~~~~~~~~-~~~~l~~~d~iiigsP~y~ 319 (404)
T 2ohh_A 256 DERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYC---LHEDDRSE-IVKDILESGAIALGAPTIY 319 (404)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEE---TTTSCHHH-HHHHHHTCSEEEEECCEET
T ss_pred CCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEE---CCCCCHHH-HHHHHHHCCEEEEECcccc
Confidence 35677777776 4468899999999999998876652 33333222 22233 555555555544
No 49
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=45.85 E-value=48 Score=24.58 Aligned_cols=36 Identities=11% Similarity=-0.050 Sum_probs=29.2
Q ss_pred CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 52 KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
..+.|++-||.+....+....+...|.+.|++.+-+
T Consensus 191 ~~g~Iil~Hd~~~~t~~aL~~ii~~l~~~Gy~fvtl 226 (240)
T 1ny1_A 191 HPGAIYLLHTVSRDNAEALDDAITDLKKQGYTFKSI 226 (240)
T ss_dssp CTTEEEEECSCSTTHHHHHHHHHHHHHHHTCEEECH
T ss_pred CCCeEEEEcCCChhHHHHHHHHHHHHHHCCCEEEEh
Confidence 345799999998777778888899999999986644
No 50
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=45.56 E-value=1.3e+02 Score=26.01 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=42.7
Q ss_pred CCeEEEE---ecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCC
Q psy5981 53 GSVLVVG---GDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNP 118 (131)
Q Consensus 53 ~~~vvVG---~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP 118 (131)
+++|+++ .|...-+..+ ++..|..+|++|++++. .+|...+.-++++. .+ .|.++++..+
T Consensus 98 ~~kVLlatv~GD~HdiG~~i---va~~L~~~G~eVi~LG~--~vP~e~iv~aa~~~~~d-iVgLS~l~t~ 161 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNI---VGVVLQCNNYEIVDLGV--MVPAEKILRTAKEVNAD-LIGLSGLITP 161 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHH---HHHHHHTTTCEEEECCS--SBCHHHHHHHHHHHTCS-EEEEECCSTH
T ss_pred CCeEEEEECCCCCchHHHHH---HHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCCC-EEEEEecCCC
Confidence 4567766 4777666655 56679999999999853 47777777777777 54 4777776543
No 51
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=45.11 E-value=39 Score=27.08 Aligned_cols=65 Identities=20% Similarity=0.142 Sum_probs=44.0
Q ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHH-HHHHHHh-cCceEEEcCCCCCC
Q psy5981 51 LKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAV-SALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 51 ~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~v-sfav~~~-~~~GImITASHNP~ 119 (131)
.++.+|.+-.|.+ + ..++..+.+++..|++|.++...++.|-+.+ .++ ++. ...|.-|+-+|||.
T Consensus 165 l~gl~va~vGD~~-~--rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~-~~~a~~~G~~v~~~~d~~ 231 (325)
T 1vlv_A 165 LKGVKVVFMGDTR-N--NVATSLMIACAKMGMNFVACGPEELKPRSDVFKRC-QEIVKETDGSVSFTSNLE 231 (325)
T ss_dssp STTCEEEEESCTT-S--HHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHH-HHHHHHHCCEEEEESCHH
T ss_pred cCCcEEEEECCCC-c--CcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHH-HHHHHHcCCeEEEEcCHH
Confidence 3456788888963 2 4677888889999999999988888887743 332 322 23344455557664
No 52
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=43.67 E-value=1.1e+02 Score=23.59 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=27.6
Q ss_pred CCeEEEEecCCcC-HHHHHHHHHHHHHHCCCcEEEe
Q psy5981 53 GSVLVVGGDGRYF-GDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 53 ~~~vvVG~D~R~~-s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
.++++|.|.++.. .+.+|+.+++.+.+.|+++..+
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~ 287 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLM 287 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEE
Confidence 4578888888854 5777999999999999877554
No 53
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=43.47 E-value=35 Score=27.05 Aligned_cols=45 Identities=24% Similarity=0.386 Sum_probs=35.5
Q ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHH
Q psy5981 51 LKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAV 98 (131)
Q Consensus 51 ~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~v 98 (131)
.++.+|.+-.|.+ + ..++..+.+++..|++|.++...++.|-+.+
T Consensus 146 l~gl~va~vGD~~-~--rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~ 190 (307)
T 2i6u_A 146 LRGLRLSYFGDGA-N--NMAHSLLLGGVTAGIHVTVAAPEGFLPDPSV 190 (307)
T ss_dssp CTTCEEEEESCTT-S--HHHHHHHHHHHHTTCEEEEECCTTSCCCHHH
T ss_pred cCCeEEEEECCCC-c--CcHHHHHHHHHHCCCEEEEECCccccCCHHH
Confidence 3456788888973 2 6677888889999999999988888887743
No 54
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=43.06 E-value=29 Score=22.44 Aligned_cols=8 Identities=50% Similarity=1.580 Sum_probs=5.4
Q ss_pred CCcccccC
Q psy5981 124 PCPLLITK 131 (131)
Q Consensus 124 ~~~~~~~~ 131 (131)
+||+|+.+
T Consensus 130 ~~pVlvv~ 137 (137)
T 2z08_A 130 PCPVLLVR 137 (137)
T ss_dssp SSCEEEEC
T ss_pred CCCEEEeC
Confidence 68877653
No 55
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=43.03 E-value=31 Score=27.64 Aligned_cols=65 Identities=11% Similarity=-0.079 Sum_probs=43.3
Q ss_pred CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccc--cchHHHHHHHHh-cC--ceEEEcCCCCCC
Q psy5981 52 KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGIL--STPAVSALIRKH-IL--GRLVKVPSSNPS 119 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~--PTP~vsfav~~~-~~--~GImITASHNP~ 119 (131)
++.+|.+-.|.| + ..++..+.+++..|++|.++...++. |-|.+--..++. .. .|.-|+-+|||.
T Consensus 160 ~gl~va~vGD~~-~--~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~ 229 (328)
T 3grf_A 160 KGIKFAYCGDSM-N--NVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCK 229 (328)
T ss_dssp GGCCEEEESCCS-S--HHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHH
T ss_pred CCcEEEEeCCCC-c--chHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHH
Confidence 345687778987 3 36788888888899999998777888 877443223333 11 344455557664
No 56
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=42.61 E-value=30 Score=27.86 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=43.8
Q ss_pred CCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHH-HHHHHHh-cCceEEEcCCCCCCC
Q psy5981 53 GSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAV-SALIRKH-ILGRLVKVPSSNPSR 120 (131)
Q Consensus 53 ~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~v-sfav~~~-~~~GImITASHNP~~ 120 (131)
+.+|++-.|.| + ..++..+.+++..|++|.++...++.|-+.+ .++ ++. ...|.-|+-+|||.+
T Consensus 155 gl~va~vGD~~-~--~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~-~~~a~~~G~~v~~~~d~~e 220 (335)
T 1dxh_A 155 DISYAYLGDAR-N--NMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQC-KKFAEESGAKLTLTEDPKE 220 (335)
T ss_dssp GCEEEEESCCS-S--HHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHH-HHHHHHHTCEEEEESCHHH
T ss_pred CeEEEEecCCc-c--chHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHH-HHHHHHcCCeEEEEeCHHH
Confidence 45688888974 2 5677888889999999999988888887744 333 333 233444555577643
No 57
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=42.51 E-value=38 Score=26.17 Aligned_cols=60 Identities=10% Similarity=0.012 Sum_probs=41.0
Q ss_pred EEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCc-----cccchHHHHHH----HHh-cCceEEEcCC
Q psy5981 56 LVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNG-----ILSTPAVSALI----RKH-ILGRLVKVPS 115 (131)
Q Consensus 56 vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g-----~~PTP~vsfav----~~~-~~~GImITAS 115 (131)
++++.|.-...+.+.+.+.+-|.+.|++|.+++... -+.=|-.+..+ ... ++-||.|-+|
T Consensus 24 li~~~sqa~kN~~lKe~i~~~L~~~G~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~g~~d~GIliCGT 93 (231)
T 3c5y_A 24 LIIENSQAAKNAVVHEALTTVAEPLGHKVFNYGMYTAEDKASLTYVMNGLLAGILLNSGAADFVVTGCGT 93 (231)
T ss_dssp ECCCGGGGGGHHHHHHHHHHHHGGGTCEEEECCCCSTTCSSCCCHHHHHHHHHHHHHHTSCSEEEEEESS
T ss_pred EEecCCHhhhHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCC
Confidence 566677666667889999999999999999984211 11235555544 333 6779988776
No 58
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=42.50 E-value=78 Score=22.28 Aligned_cols=24 Identities=4% Similarity=-0.152 Sum_probs=19.3
Q ss_pred cCHHHHHHHHHHH-HHHCCCcEEEe
Q psy5981 64 YFGDVAVDKIIKI-SAANGVAKLIV 87 (131)
Q Consensus 64 ~~s~~~a~~~a~~-L~~~Gi~V~~~ 87 (131)
-+++.+++.+++. |.+.|.+|..+
T Consensus 16 g~t~~la~~i~~~~l~~~g~~v~~~ 40 (197)
T 2vzf_A 16 STTAKLAEYALAHVLARSDSQGRHI 40 (197)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHCCCeEEEE
Confidence 4578889999998 88888877655
No 59
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=41.74 E-value=34 Score=27.57 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=41.4
Q ss_pred CCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCC
Q psy5981 53 GSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 53 ~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~ 119 (131)
+.+|++-.|. + ..++..+..++..|++|.++...++.|-+.+--..++. ...|.-|+-+|||.
T Consensus 175 glkva~vGD~---~-rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~ 238 (339)
T 4a8t_A 175 DCKVVFVGDA---T-QVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS 238 (339)
T ss_dssp GCEEEEESSC---C-HHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG
T ss_pred CCEEEEECCC---c-hhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh
Confidence 4567777787 2 45667778888899999999877888877543333333 22344455566664
No 60
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3
Probab=40.82 E-value=49 Score=24.79 Aligned_cols=35 Identities=14% Similarity=-0.053 Sum_probs=28.8
Q ss_pred CCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 53 GSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 53 ~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
.+.|++-||.+....+....+...|.+.|++++-+
T Consensus 204 ~G~IiL~Hd~~~~t~~aL~~ii~~l~~~Gy~fvtl 238 (247)
T 2j13_A 204 PGSILLLHAISKDNAEALAKIIDDLREKGYHFKSL 238 (247)
T ss_dssp TTBEEEECCCSTTHHHHHHHHHHHHHHTTCEEECH
T ss_pred CCeEEEEeCCcHhHHHHHHHHHHHHHHCCCEEEEh
Confidence 45699999998777778888999999999996543
No 61
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=40.46 E-value=39 Score=22.88 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=21.5
Q ss_pred HHHHHHHCCCcEEEecCCccccchHHHHHHHHhcCceEEEcCCCCCCC
Q psy5981 73 IIKISAANGVAKLIVGQNGILSTPAVSALIRKHILGRLVKVPSSNPSR 120 (131)
Q Consensus 73 ~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~~~~GImITASHNP~~ 120 (131)
+.+.+...|+++......| -|.-.+.-.+++. ..-++|-+||....
T Consensus 92 ~~~~~~~~g~~~~~~v~~G-~~~~~I~~~a~~~-~~DLIVmG~~g~~~ 137 (175)
T 2gm3_A 92 FVNKCHEIGVGCEAWIKTG-DPKDVICQEVKRV-RPDFLVVGSRGLGR 137 (175)
T ss_dssp HHHHHHHHTCEEEEEEEES-CHHHHHHHHHHHH-CCSEEEEEECCCC-
T ss_pred HHHHHHHCCCceEEEEecC-CHHHHHHHHHHHh-CCCEEEEeCCCCCh
Confidence 3444566788763221124 2444444444544 23355556665443
No 62
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=39.71 E-value=64 Score=25.56 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=44.5
Q ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHHHHC-CCcEEEecCCccccchHH-HHHHHHhcCceEEEcCCCCCCC
Q psy5981 51 LKGSVLVVGGDGRYFGDVAVDKIIKISAAN-GVAKLIVGQNGILSTPAV-SALIRKHILGRLVKVPSSNPSR 120 (131)
Q Consensus 51 ~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~-Gi~V~~~~~~g~~PTP~v-sfav~~~~~~GImITASHNP~~ 120 (131)
.++.+|.+-.|.+++- .++..+.+++.. |++|.++...++.|-|.+ .++ ++ .|.-++-+|||.+
T Consensus 152 l~gl~va~vGD~~~~r--va~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~-~~---~g~~~~~~~d~~e 217 (310)
T 3csu_A 152 LDNLHVAMVGDLKYGR--TVHSLTQALAKFDGNRFYFIAPDALAMPQYILDML-DE---KGIAWSLHSSIEE 217 (310)
T ss_dssp SSSCEEEEESCTTTCH--HHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHH-HH---TTCCEEECSCGGG
T ss_pred cCCcEEEEECCCCCCc--hHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHH-HH---cCCeEEEEcCHHH
Confidence 3456788888987643 467778888999 999999988788887754 332 22 2334555688865
No 63
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=39.03 E-value=32 Score=22.24 Aligned_cols=34 Identities=6% Similarity=-0.008 Sum_probs=24.3
Q ss_pred CeEEEEecCCcC--HHHHHHHHHHHHHHCCCcEEEe
Q psy5981 54 SVLVVGGDGRYF--GDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 54 ~~vvVG~D~R~~--s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++|+|+.|.-.. |....+.+++.....|.+++++
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll 37 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFL 37 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEE
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEE
Confidence 468888888877 7777777666666667776655
No 64
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=38.92 E-value=39 Score=27.49 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=41.5
Q ss_pred CCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCC
Q psy5981 53 GSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 53 ~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~ 119 (131)
+.+|++-.|. + ..++..+.+++..|++|.++...++.|-+.+--..++. ...|.-|+-+|||.
T Consensus 153 glkva~vGD~---~-rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~ 216 (355)
T 4a8p_A 153 DCKVVFVGDA---T-QVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS 216 (355)
T ss_dssp GCEEEEESCC---C-HHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG
T ss_pred CCEEEEECCC---c-hhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH
Confidence 4567777787 3 34667778888899999999877888877543333333 22344555567764
No 65
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=38.73 E-value=89 Score=21.55 Aligned_cols=33 Identities=12% Similarity=-0.004 Sum_probs=24.3
Q ss_pred eEEEEecCCc-CHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 55 VLVVGGDGRY-FGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 55 ~vvVG~D~R~-~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+|+|-+.++. +++.+++.+++.+.+.|++|.++
T Consensus 7 kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~ 40 (200)
T 2a5l_A 7 YILVLYYSRHGATAEMARQIARGVEQGGFEARVR 40 (200)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEE
Confidence 4556566653 46788999999999899887655
No 66
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=38.72 E-value=35 Score=27.47 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=43.3
Q ss_pred CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHH-HHHHHHh-cCceEEEcCCCCCC
Q psy5981 52 KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAV-SALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~v-sfav~~~-~~~GImITASHNP~ 119 (131)
++.+|++-.|.| + ..++..+.+++..|++|.++...++.|-|.+ .++ ++. ...|.-|+-+|||.
T Consensus 154 ~gl~ia~vGD~~-~--~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~-~~~a~~~G~~v~~~~d~~ 219 (333)
T 1duv_G 154 NEMTLVYAGDAR-N--NMGNSMLEAAALTGLDLRLVAPQACWPEAALVTEC-RALAQQNGGNITLTEDVA 219 (333)
T ss_dssp GGCEEEEESCTT-S--HHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHH-HHHHHHTTCEEEEESCHH
T ss_pred CCcEEEEECCCc-c--chHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHH-HHHHHHcCCeEEEEECHH
Confidence 345788888974 2 5667778888888999999988888887744 333 333 23344455557764
No 67
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=38.63 E-value=30 Score=27.99 Aligned_cols=64 Identities=14% Similarity=0.044 Sum_probs=45.0
Q ss_pred CCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCC
Q psy5981 53 GSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 53 ~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~ 119 (131)
+.+|.+-.|.| + ..++..+..++..|++|.++...++.|-+.+--..+.. ...|.-|+-+|||.
T Consensus 181 gl~ia~vGD~~-~--~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~ 245 (358)
T 4h31_A 181 DIQFAYLGDAR-N--NVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVA 245 (358)
T ss_dssp GCEEEEESCTT-S--HHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHH
T ss_pred ceEEEecCCCC-c--ccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHH
Confidence 34677777986 2 57777788889999999999877888888766555554 33444555556654
No 68
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=38.08 E-value=79 Score=20.29 Aligned_cols=19 Identities=16% Similarity=0.178 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHCCCcE
Q psy5981 66 GDVAVDKIIKISAANGVAK 84 (131)
Q Consensus 66 s~~~a~~~a~~L~~~Gi~V 84 (131)
++.+|+.+++.+.+.|++|
T Consensus 13 T~~~a~~i~~~l~~~g~~v 31 (137)
T 2fz5_A 13 TEAMANEIEAAVKAAGADV 31 (137)
T ss_dssp HHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHhCCCeE
Confidence 4445555555555555544
No 69
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=37.81 E-value=86 Score=21.81 Aligned_cols=33 Identities=12% Similarity=0.034 Sum_probs=21.2
Q ss_pred eEEEEecCCc-CHHHHHHHHHHHHHH-CCCcEEEe
Q psy5981 55 VLVVGGDGRY-FGDVAVDKIIKISAA-NGVAKLIV 87 (131)
Q Consensus 55 ~vvVG~D~R~-~s~~~a~~~a~~L~~-~Gi~V~~~ 87 (131)
+|+|-|.++. +++.+++.+++.|.+ .|++|..+
T Consensus 6 kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~ 40 (188)
T 2ark_A 6 KVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLK 40 (188)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEE
Confidence 3555555553 356677778888877 77766544
No 70
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=37.26 E-value=35 Score=22.57 Aligned_cols=35 Identities=11% Similarity=-0.009 Sum_probs=27.8
Q ss_pred CCeEEEEec--CCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 53 GSVLVVGGD--GRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 53 ~~~vvVG~D--~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
-++|+|+.| .-..|+...+.+++.....|.+++++
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll 51 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGIC 51 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 357999999 88888888888888777778887665
No 71
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=37.20 E-value=66 Score=25.42 Aligned_cols=65 Identities=11% Similarity=0.110 Sum_probs=42.5
Q ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHHHHC-CCcEEEecCCccccchHHHHHHHHhcCceEEEcCCCCCCC
Q psy5981 51 LKGSVLVVGGDGRYFGDVAVDKIIKISAAN-GVAKLIVGQNGILSTPAVSALIRKHILGRLVKVPSSNPSR 120 (131)
Q Consensus 51 ~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~-Gi~V~~~~~~g~~PTP~vsfav~~~~~~GImITASHNP~~ 120 (131)
.++.+|++-.|.+++- .++..+.+++.. |+++.++...++.|-|.+--..++ .|.-|+-+|+|.+
T Consensus 149 l~glkva~vGD~~~~r--va~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~---~g~~~~~~~d~~e 214 (306)
T 4ekn_B 149 IDGIKIAFVGDLKYGR--TVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKA---KNIKFYEKESLDD 214 (306)
T ss_dssp STTCEEEEESCTTTCH--HHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHH---TTCCEEEESCGGG
T ss_pred cCCCEEEEEcCCCCCc--HHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHH---cCCEEEEEcCHHH
Confidence 4456787777988653 667778888899 999998876677666543211222 2444555677754
No 72
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=35.83 E-value=40 Score=22.91 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=27.5
Q ss_pred CCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 53 GSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 53 ~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
.++|+|+.|....|....+.+++... .|.++.++
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll 50 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIA 50 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEE
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEE
Confidence 46799999999888888877777666 88887766
No 73
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=35.30 E-value=52 Score=26.13 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=42.7
Q ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHH-HHHHHHh-cCceEEEcCCCCCC
Q psy5981 51 LKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAV-SALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 51 ~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~v-sfav~~~-~~~GImITASHNP~ 119 (131)
.++.+|.+-.|. + ..++..+.+++..|++|.++...++.|-+.+ .++ ++. ...|.-|+-+|||.
T Consensus 153 l~gl~va~vGD~---~-rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~-~~~a~~~g~~~~~~~d~~ 218 (315)
T 1pvv_A 153 IKGVKVVYVGDG---N-NVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWA-EQNAAESGGSFELLHDPV 218 (315)
T ss_dssp CTTCEEEEESCC---C-HHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHH-HHHHHHHTCEEEEESCHH
T ss_pred cCCcEEEEECCC---c-chHHHHHHHHHHCCCEEEEECCccccCCHHHHHHH-HHHHHHcCCeEEEEeCHH
Confidence 345678888886 2 4667778888899999999988888887743 333 222 22344455557764
No 74
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=34.92 E-value=36 Score=27.49 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=42.3
Q ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCC
Q psy5981 51 LKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 51 ~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~ 119 (131)
.++.+|++-.|. + ..++..+.+++..|+++.++...++.|-|.+-=.+++. ...|.-|+-+|||.
T Consensus 177 l~glkva~vGD~---~-nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~ 242 (340)
T 4ep1_A 177 FKGIKLAYVGDG---N-NVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPE 242 (340)
T ss_dssp CTTCEEEEESCC---C-HHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHH
T ss_pred CCCCEEEEECCC---c-hhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHH
Confidence 445678777787 2 25677777888889999999877888877543233332 22344455566664
No 75
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=34.84 E-value=48 Score=26.14 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=43.1
Q ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHHHHC-CCcEEEecCCccccchHHHHHHHHhcCceEEEcCCCCCCC
Q psy5981 51 LKGSVLVVGGDGRYFGDVAVDKIIKISAAN-GVAKLIVGQNGILSTPAVSALIRKHILGRLVKVPSSNPSR 120 (131)
Q Consensus 51 ~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~-Gi~V~~~~~~g~~PTP~vsfav~~~~~~GImITASHNP~~ 120 (131)
.++.+|.+-.|.+++- .++..+.+++.. |++|.++...++.|-+.+ ++ ..|.-++-+|||.+
T Consensus 147 l~gl~va~vGD~~~~r--va~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~---~~---~~g~~~~~~~d~~e 209 (299)
T 1pg5_A 147 IDGLVFALLGDLKYAR--TVNSLLRILTRFRPKLVYLISPQLLRARKEI---LD---ELNYPVKEVENPFE 209 (299)
T ss_dssp STTCEEEEEECCSSCH--HHHHHHHHGGGSCCSEEEEECCGGGCCCHHH---HT---TCCSCEEEESCGGG
T ss_pred cCCcEEEEECCCCCCc--hHHHHHHHHHhCCCCEEEEECCchhcCCHHH---HH---HcCCeEEEeCCHHH
Confidence 3456788888987643 467778888899 999999987788887765 12 22334555577754
No 76
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae} PDB: 3peb_A*
Probab=34.58 E-value=74 Score=20.78 Aligned_cols=41 Identities=12% Similarity=-0.049 Sum_probs=26.1
Q ss_pred HHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCc----eEEEcCCCCC
Q psy5981 73 IIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILG----RLVKVPSSNP 118 (131)
Q Consensus 73 ~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~----GImITASHNP 118 (131)
+.+.|.++|+|.+++ .+-+-+.|.+-.. ..+ .++||+...|
T Consensus 8 l~~~m~~~glDa~li-----~~~~ni~YlTGf~~~~~er~~~l~v~~~g~~ 53 (132)
T 3ooo_A 8 IRHHLHSVQAELAVF-----SDPVTVNYLTGFFCDPHERQMFLFVYEDRDP 53 (132)
T ss_dssp HHHHHHHTTCSEEEE-----CCHHHHHHHHSCCCCCTTSCCEEEEESSSCC
T ss_pred HHHHHHHCCCCEEEE-----cCcchHHHHhCCCCCCCcceEEEEEeCCCCE
Confidence 456688999998876 3345566666443 222 6888875443
No 77
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=34.32 E-value=41 Score=27.39 Aligned_cols=65 Identities=22% Similarity=0.247 Sum_probs=42.6
Q ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHH-HHHHHHh-cCceEEEcCCCCCC
Q psy5981 51 LKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAV-SALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 51 ~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~v-sfav~~~-~~~GImITASHNP~ 119 (131)
.++.+|++-.|.| + ..++..+.+++..|++|.++...++.|-+.+ .++ ++. ...|.-|+-+|||.
T Consensus 174 l~gl~va~vGD~~-~--rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~-~~~a~~~G~~v~~~~d~~ 240 (359)
T 2w37_A 174 LQGLTLTFMGDGR-N--NVANSLLVTGAILGVNIHIVAPKALFPTEETQNIA-KGFAEKSGAKLVITDDLD 240 (359)
T ss_dssp CTTCEEEEESCTT-S--HHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHH-HHHHHHHTCCEEEESCHH
T ss_pred cCCeEEEEECCCc-c--chHHHHHHHHHHcCCEEEEECCccccCCHHHHHHH-HHHHHHcCCeEEEEeCHH
Confidence 3456788888974 2 5667778888888999999988888887744 333 222 22343344446653
No 78
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=33.80 E-value=1.1e+02 Score=22.94 Aligned_cols=57 Identities=5% Similarity=-0.189 Sum_probs=38.2
Q ss_pred CCCeEEEEecCC-cCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh--cCceEEEcCCCC
Q psy5981 52 KGSVLVVGGDGR-YFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH--ILGRLVKVPSSN 117 (131)
Q Consensus 52 ~~~~vvVG~D~R-~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~--~~~GImITASHN 117 (131)
..++|+|-|.+. -+++.+|+.+++.| ..|+++.++. +--.. ...+ .+.-|++|++++
T Consensus 39 ~~~kv~IlYgS~tGnte~~A~~La~~l-~~g~~v~v~~---l~~~~-----~~~l~~~~~vI~~tsTyG 98 (219)
T 3hr4_A 39 SRVRVTILFATETGKSEALAWDLGALF-SCAFNPKVVC---MDKYR-----LSCLEEERLLLVVTSTFG 98 (219)
T ss_dssp TSCEEEEEEECSSSHHHHHHHHHHHHH-TTTSEEEEEE---GGGCC-----GGGGGTCSEEEEEEECBT
T ss_pred cCCcEEEEEECCchHHHHHHHHHHHHH-HcCCCeEEEE---cccCC-----HhHhccCCeEEEEEeccC
Confidence 345788999988 56788899999987 6888765442 11111 1122 566788999985
No 79
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=33.76 E-value=36 Score=27.25 Aligned_cols=65 Identities=23% Similarity=0.197 Sum_probs=40.2
Q ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCC
Q psy5981 51 LKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 51 ~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~ 119 (131)
.++.+|++-.|. + ..++..+..++..|+++.++...++.|-|.+--.+++. ...|.-|+-+|||.
T Consensus 155 l~glkva~vGD~---~-rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~ 220 (323)
T 3gd5_A 155 LAGLKLAYVGDG---N-NVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPF 220 (323)
T ss_dssp CTTCEEEEESCC---C-HHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHH
T ss_pred CCCCEEEEECCC---C-cHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHH
Confidence 345678777787 2 34566667778889999999877888877543222322 12233344445553
No 80
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Probab=33.40 E-value=80 Score=20.83 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=25.8
Q ss_pred HHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCc----eEEEcCCCCC
Q psy5981 73 IIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILG----RLVKVPSSNP 118 (131)
Q Consensus 73 ~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~----GImITASHNP 118 (131)
+.+.|.++|+|.+++ .+-+-+.|.+-.. ..+ .++||+...|
T Consensus 9 l~~~m~~~glDa~li-----~~~~ni~YlTGf~~~~~er~~~llv~~~g~~ 54 (140)
T 3i7m_A 9 IQQWTAQHHASMTYL-----SNPKTIEYLTGFGSDPIERVLALVVFPDQDP 54 (140)
T ss_dssp HHHHHHHTTCSEEEE-----CCHHHHHHHHCCCCCCCSSCCEEEECSSSCC
T ss_pred HHHHHHHcCCCEEEE-----CCCCcceeecCCCCCCccceEEEEEeCCCCE
Confidence 456788999998876 2334566665433 222 6788875443
No 81
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=33.14 E-value=47 Score=23.99 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=38.6
Q ss_pred CCeEEEEecCCc-CHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh--cCceEEEcCCCC
Q psy5981 53 GSVLVVGGDGRY-FGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH--ILGRLVKVPSSN 117 (131)
Q Consensus 53 ~~~vvVG~D~R~-~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~--~~~GImITASHN 117 (131)
..+++|-|.+.. +.+.+|+.+++.|.+.|++|.++. +.-. ...+ ++.-|++|++||
T Consensus 21 ~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~---l~~~------~~~l~~~d~vi~g~~Ty~ 79 (191)
T 1bvy_F 21 NTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVAT---LDSH------AGNLPREGAVLIVTASYN 79 (191)
T ss_dssp CCCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEE---GGGS------TTCCCSSSEEEEEECCBT
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEee---HHHh------hhhhhhCCeEEEEEeecC
Confidence 356889999884 567899999999999998865542 2111 0123 566678888874
No 82
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=32.78 E-value=47 Score=22.33 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHCCCcEEE--ecCCccccchHHHHHHHHhcCceEEEcCCCCCCCCCC--------------CCcccc
Q psy5981 66 GDVAVDKIIKISAANGVAKLI--VGQNGILSTPAVSALIRKHILGRLVKVPSSNPSRTIR--------------PCPLLI 129 (131)
Q Consensus 66 s~~~a~~~a~~L~~~Gi~V~~--~~~~g~~PTP~vsfav~~~~~~GImITASHNP~~~ng--------------~~~~~~ 129 (131)
.+...+.+.+.+...|+++-. ....| -|.-.+.-.+++. +.-++|-++|......+ |||+|+
T Consensus 76 ~~~~l~~~~~~~~~~g~~~~~~~~v~~G-~~~~~I~~~a~~~-~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLv 153 (155)
T 3dlo_A 76 AKETLSWAVSIIRKEGAEGEEHLLVRGK-EPPDDIVDFADEV-DAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVIC 153 (155)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSS-CHHHHHHHHHHHT-TCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCC-CHHHHHHHHHHHc-CCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEE
Confidence 344455566778888998653 22223 2333444444544 33455666665544433 788887
Q ss_pred cC
Q psy5981 130 TK 131 (131)
Q Consensus 130 ~~ 131 (131)
.|
T Consensus 154 Vr 155 (155)
T 3dlo_A 154 IK 155 (155)
T ss_dssp EC
T ss_pred eC
Confidence 65
No 83
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=31.78 E-value=29 Score=22.35 Aligned_cols=33 Identities=12% Similarity=0.093 Sum_probs=25.8
Q ss_pred eEEEEecCCcCHHHHHHHHHHHH-HHCCCcEEEe
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKIS-AANGVAKLIV 87 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L-~~~Gi~V~~~ 87 (131)
+|+|+.|.-..|....+.+++-. ...|.++.++
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll 36 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKDADCTLTLI 36 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEE
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 58999999888888877777766 6677777655
No 84
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=31.47 E-value=26 Score=23.33 Aligned_cols=34 Identities=6% Similarity=0.114 Sum_probs=25.8
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++|+|+.|....|....+.+++.....|.+++++
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll 39 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTLKAEEVILL 39 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEE
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 4699999998888887777766666667777655
No 85
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=30.88 E-value=96 Score=21.88 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=28.4
Q ss_pred CCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEec
Q psy5981 53 GSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVG 88 (131)
Q Consensus 53 ~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~ 88 (131)
.+.|++-||...........+...|.+.|++.+.+.
T Consensus 148 ~g~IiL~Hd~~~~t~~al~~ii~~l~~~Gy~~v~l~ 183 (195)
T 2cc0_A 148 NGQVILMHDWPANTLAAIPRIAQTLAGKGLCSGMIS 183 (195)
T ss_dssp TTCEEEEESSCHHHHHHHHHHHHHHHHTTEEECEEC
T ss_pred cCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEeC
Confidence 356999999886666667778889999999877664
No 86
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=30.24 E-value=65 Score=21.25 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHHHHHCCCcE
Q psy5981 65 FGDVAVDKIIKISAANGVAK 84 (131)
Q Consensus 65 ~s~~~a~~~a~~L~~~Gi~V 84 (131)
+++.+|+.+++.|.+.|++|
T Consensus 13 nt~~~a~~i~~~l~~~g~~v 32 (147)
T 1f4p_A 13 NTEYTAETIARELADAGYEV 32 (147)
T ss_dssp HHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHhcCCee
Confidence 34555555555555555554
No 87
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=29.74 E-value=1.1e+02 Score=22.55 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=29.2
Q ss_pred CCeEEEEecCCcC-------HHHHHHHHHHHHHHCCCcEEEe
Q psy5981 53 GSVLVVGGDGRYF-------GDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 53 ~~~vvVG~D~R~~-------s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
.++|+|+.|.... |....+.+.+.....|.+++++
T Consensus 134 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll 175 (290)
T 3mt0_A 134 GGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVI 175 (290)
T ss_dssp TCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4689999999988 8888888888788888888776
No 88
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=28.99 E-value=1e+02 Score=21.13 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=23.3
Q ss_pred eEEEEecCCc-CHHHHHHHHHHHHHH-CCCcEEEe
Q psy5981 55 VLVVGGDGRY-FGDVAVDKIIKISAA-NGVAKLIV 87 (131)
Q Consensus 55 ~vvVG~D~R~-~s~~~a~~~a~~L~~-~Gi~V~~~ 87 (131)
+|+|-+.++. +++.+++.+++++.+ .|++|.++
T Consensus 3 kilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~ 37 (198)
T 3b6i_A 3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVK 37 (198)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEE
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 3555566654 467788889999988 88876554
No 89
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=28.69 E-value=1.6e+02 Score=21.10 Aligned_cols=60 Identities=10% Similarity=0.111 Sum_probs=42.9
Q ss_pred EEEEec------CCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh--------cCceEEEcCCCCC
Q psy5981 56 LVVGGD------GRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH--------ILGRLVKVPSSNP 118 (131)
Q Consensus 56 vvVG~D------~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~--------~~~GImITASHNP 118 (131)
+||+.. .|..+..=++.+.+.|...|++|....+ ..--.+.-+++++ .+..+++=+||==
T Consensus 47 LIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~d---lt~~em~~~l~~f~~~~d~~~~d~~v~~~lsHG~ 120 (178)
T 2h54_A 47 LIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKN---LTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGI 120 (178)
T ss_dssp EEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEES---CCHHHHHHHHHHHHTCGGGGGCSCEEEEEESCBC
T ss_pred EEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEecC---CCHHHHHHHHHHHHhhhhcCCCCEEEEEEecCCC
Confidence 678876 6888888899999999999999987742 2333344344332 4567888889943
No 90
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=28.60 E-value=36 Score=22.87 Aligned_cols=34 Identities=12% Similarity=-0.077 Sum_probs=25.0
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++|+|+.|....|+...+.+++.....|.+++++
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll 39 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILL 39 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEE
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4689999988888877777666666667776554
No 91
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas}
Probab=28.18 E-value=1.1e+02 Score=19.94 Aligned_cols=40 Identities=13% Similarity=-0.079 Sum_probs=25.4
Q ss_pred HHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCc----eEEEcCCCC
Q psy5981 73 IIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILG----RLVKVPSSN 117 (131)
Q Consensus 73 ~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~----GImITASHN 117 (131)
+.+.|.++|+|.+++ .+-+-+.|.+-.. ..+ .++||+...
T Consensus 8 l~~~m~~~glDa~li-----~~~~ni~YltGf~~~~~er~~~l~v~~~g~ 52 (132)
T 3o5v_A 8 IRLYLDQKGAELAIF-----SDPVTINYLTGFFCDPHERQLFLFVYHDLA 52 (132)
T ss_dssp HHHHHHHTTCCEEEE-----CCHHHHHHHHSCCCCCTTSCCEEEEESSSC
T ss_pred HHHHHHHCCCCEEEE-----cCcchhhHhhCCCCCCccceEEEEEeCCCC
Confidence 456688999998876 3345566666443 222 688887543
No 92
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=27.95 E-value=76 Score=22.89 Aligned_cols=33 Identities=9% Similarity=-0.020 Sum_probs=27.3
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+|+|+.|.-..|+...+.++.-....|.+++++
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll 34 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKLSAPLTVL 34 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEE
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 589999999999988888877777778887766
No 93
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=27.50 E-value=1.6e+02 Score=21.49 Aligned_cols=34 Identities=12% Similarity=-0.068 Sum_probs=19.5
Q ss_pred CCeEEEE-ecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 53 GSVLVVG-GDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 53 ~~~vvVG-~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
-++||+| +|.....+.+. ...+.|.++|++|..+
T Consensus 111 I~rVV~~~~d~~~~~p~~~-~g~~~L~~aGI~V~~~ 145 (190)
T 2nyt_A 111 LRLLILVGRLFMWEEPEIQ-AALKKLKEAGCKLRIM 145 (190)
T ss_pred ccEEEEEeecCCcCChHHH-HHHHHHHHCCCEEEEe
Confidence 3456664 56543333333 4556688888887654
No 94
>2ehp_A AQ_1627 protein; putative protein, NPPSFA, national project protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eiu_A
Probab=27.34 E-value=1.5e+02 Score=20.32 Aligned_cols=62 Identities=8% Similarity=-0.132 Sum_probs=40.6
Q ss_pred cCCccccCCcccchHHHHHHHHHHHHHhc-ccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 20 TSGLRKPTKTFQQEHYTENFIQSILTALG-DKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 20 T~GiRg~~g~~~~~~~~~~~~~ai~~~~~-~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
--|+||.+. ++.+.+.+...|++..+. +.....++++--|..+.+- +++-+++..|-+|+..
T Consensus 11 v~G~pG~YP--LTaENL~R~GLALCtLl~iek~~eeP~l~i~elNFltm----alsVGFM~gGG~V~vg 73 (126)
T 2ehp_A 11 VEGVPGNYP--LTAENLFRIGLALCTLWILDKEIEEPTLSIPETNFVTL----ALSVGFMNAGGSVNVG 73 (126)
T ss_dssp EEECTTSTT--SSHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCSHHHH----HHHHHHHHTTCEEEES
T ss_pred EeccCCccc--ccHHHHHHHHHHHHHHHHHHhhhcCCeeeecccceeee----eeeeeEeccCcceEee
Confidence 457777776 555557778888886664 2222345777778776543 4566788888887754
No 95
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=27.19 E-value=1.5e+02 Score=23.97 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=31.6
Q ss_pred CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHH
Q psy5981 52 KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAV 98 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~v 98 (131)
++.+|.+-.|... .++..+..++..|++|.++...++.|-+.+
T Consensus 187 ~glkva~vGD~~n----va~Sl~~~l~~lG~~v~~~~P~~~~~~~~i 229 (353)
T 3sds_A 187 EGLKIAWVGDANN----VLFDLAIAATKMGVNVAVATPRGYEIPSHI 229 (353)
T ss_dssp TTCEEEEESCCCH----HHHHHHHHHHHTTCEEEEECCTTCCCCHHH
T ss_pred CCCEEEEECCCch----HHHHHHHHHHHcCCEEEEECCcccCCCHHH
Confidence 4557877779853 677778888889999999877777554443
No 96
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=27.14 E-value=96 Score=23.04 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=29.7
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEE
Q psy5981 40 IQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKL 85 (131)
Q Consensus 40 ~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~ 85 (131)
+..+++++.+..+.++|.+-++.-..+....+.+.+.|.+.|+++.
T Consensus 125 ~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~ 170 (356)
T 3ipc_A 125 GGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEV 170 (356)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEE
Confidence 3444454433334455655566556677888888889999999863
No 97
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=26.59 E-value=57 Score=26.06 Aligned_cols=28 Identities=11% Similarity=0.006 Sum_probs=23.9
Q ss_pred ecCCcCHHHHHHHHHHHHHHCCCcEEEec
Q psy5981 60 GDGRYFGDVAVDKIIKISAANGVAKLIVG 88 (131)
Q Consensus 60 ~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~ 88 (131)
+| |+.+.+.+..-++-+.+.|.++++++
T Consensus 42 sd-~~~~~~~al~~A~~~v~~GAdIIDIG 69 (314)
T 3tr9_A 42 YH-PHLDLNSALRTAEKMVDEGADILDIG 69 (314)
T ss_dssp BC-BCCSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred hh-ccCCHHHHHHHHHHHHHCCCCEEEEC
Confidence 57 88888888888888999999999994
No 98
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=25.93 E-value=82 Score=23.41 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=27.8
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
++|+|+.|....|....+.+.+.+...|.++.++
T Consensus 172 ~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll 205 (309)
T 3cis_A 172 APVLVGVDGSSASELATAIAFDEASRRNVDLVAL 205 (309)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5799999999989888888777777778777665
No 99
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=25.63 E-value=82 Score=21.82 Aligned_cols=33 Identities=18% Similarity=-0.132 Sum_probs=23.7
Q ss_pred eEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 55 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 55 ~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+|+|-+.+.-+++.+++.+++++.+.|++|..+
T Consensus 6 kilii~~S~g~T~~la~~i~~~l~~~g~~v~~~ 38 (199)
T 2zki_A 6 NILVLFYGYGSIVELAKEIGKGAEEAGAEVKIR 38 (199)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEE
T ss_pred EEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEE
Confidence 355444444457888999999998888887555
No 100
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=25.50 E-value=64 Score=25.55 Aligned_cols=63 Identities=11% Similarity=0.046 Sum_probs=39.9
Q ss_pred CCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcCCCCCC
Q psy5981 53 GSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNPS 119 (131)
Q Consensus 53 ~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITASHNP~ 119 (131)
+.+|.+-.|. + ..++..+..++..|+++.++...++.|-|.+--..++. ...|.-|+-+|||.
T Consensus 146 gl~va~vGD~---~-~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~ 209 (307)
T 3tpf_A 146 IAKVAFIGDS---N-NMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKF 209 (307)
T ss_dssp CCEEEEESCS---S-HHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHH
T ss_pred CCEEEEEcCC---C-ccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHH
Confidence 5567776784 2 36777778888889999999877888877542222322 12234455556653
No 101
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=24.15 E-value=52 Score=22.68 Aligned_cols=32 Identities=3% Similarity=-0.090 Sum_probs=21.4
Q ss_pred eEEEEecCCc-CHHHHHHHHHHHHHHCCCcEEE
Q psy5981 55 VLVVGGDGRY-FGDVAVDKIIKISAANGVAKLI 86 (131)
Q Consensus 55 ~vvVG~D~R~-~s~~~a~~~a~~L~~~Gi~V~~ 86 (131)
+++|-|.+.. +++.+|+.+++.|.+.|++|..
T Consensus 11 ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~ 43 (167)
T 1ykg_A 11 GITIISASQTGNARRVAEALRDDLLAAKLNVKL 43 (167)
T ss_dssp -CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEE
T ss_pred eEEEEEECCchHHHHHHHHHHHHHHHCCCceEE
Confidence 4666677763 5567788888888777766543
No 102
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=23.78 E-value=2.3e+02 Score=21.08 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=38.4
Q ss_pred EEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceE-EEcCCCCCCCCCCCC
Q psy5981 57 VVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRL-VKVPSSNPSRTIRPC 125 (131)
Q Consensus 57 vVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GI-mITASHNP~~~ng~~ 125 (131)
++-+|+..... +++.+-+...|+++++ |...+..+.-+.... ...++ +++.+.++....+|.
T Consensus 37 l~~~D~~~~~~---~aa~~~~~~~~v~~ii----Gp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~ 100 (327)
T 3ckm_A 37 VQVFDTSMNSV---QDIIAQAKQAGIKTLV----GPLLKQNLDVILADPAQIQGMDVLALNATPNSRAIPQ 100 (327)
T ss_dssp EEEEETTTSCH---HHHHHHHHHTTCCEEE----CCCSHHHHHHHHHCGGGGTTCEEEESCCCTTCCCCTT
T ss_pred EEEEeCCCCHH---HHHHHHHHHcCCeEEE----EccccccchhhHHHHHhccCceEeccCcCcccccCCC
Confidence 56689886653 3456778899999664 666666555444443 33444 556667776655554
No 103
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=23.28 E-value=2.3e+02 Score=21.07 Aligned_cols=33 Identities=9% Similarity=0.170 Sum_probs=23.8
Q ss_pred eEE-EEecCC--cCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 55 VLV-VGGDGR--YFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 55 ~vv-VG~D~R--~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+|+ |-.=.| .++..+++.+++.+...|++|.++
T Consensus 36 kIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~i 71 (247)
T 2q62_A 36 RILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVF 71 (247)
T ss_dssp EEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred eEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEE
Confidence 443 333345 456788999999999999988766
No 104
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=23.20 E-value=85 Score=25.17 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=24.2
Q ss_pred eEEEE--ecCCcCHHHHHHHHHHHHHHCCCcEEEecC
Q psy5981 55 VLVVG--GDGRYFGDVAVDKIIKISAANGVAKLIVGQ 89 (131)
Q Consensus 55 ~vvVG--~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~ 89 (131)
.+++| -|.|.+|+... +-+.++|++|+++++
T Consensus 68 ~~IlGgstsQrlTSKQav----EElL~cGvev~IiNr 100 (358)
T 2c1l_A 68 IAILGGSTSQRLSSRQVV----EELLNRGVEVHIINR 100 (358)
T ss_dssp EEEEECCSSSCCBBHHHH----HHHHHTTCEEEEEEC
T ss_pred EEEEcccccccccHHHHH----HHHHhcCCceEEeee
Confidence 36788 78999998764 445789999999854
No 105
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=23.11 E-value=1.6e+02 Score=21.60 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=25.3
Q ss_pred HHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEE
Q psy5981 41 QSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKL 85 (131)
Q Consensus 41 ~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~ 85 (131)
+.+++++.+..+.++|.+-++.-..+....+.+.+.|...|+++.
T Consensus 126 ~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~ 170 (346)
T 1usg_A 126 PTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVV 170 (346)
T ss_dssp HHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEE
Confidence 334444432223345544443334566667777788888888865
No 106
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=22.86 E-value=1.1e+02 Score=24.71 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=30.7
Q ss_pred CeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 54 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 54 ~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+.|++.+|+=.-++.++..+++.|...|+++.++
T Consensus 288 ~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~~~v~ 321 (407)
T 2au3_A 288 KKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPV 321 (407)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 5799999999999999999999999999988655
No 107
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; 2.00A {Streptococcus pneumoniae}
Probab=22.84 E-value=1.2e+02 Score=19.61 Aligned_cols=40 Identities=10% Similarity=0.015 Sum_probs=25.7
Q ss_pred HHHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCc----eEEEcCCCC
Q psy5981 73 IIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILG----RLVKVPSSN 117 (131)
Q Consensus 73 ~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~----GImITASHN 117 (131)
+.+.|.++|+|.+++ .+-+-+.|.+--. .++ .++||+...
T Consensus 10 lr~~m~~~~~da~li-----~~~~ni~yltGf~g~~~er~~~lli~~~g~ 54 (138)
T 3pn9_A 10 ILTYLESEKLDVAVV-----SDPVTINYLTGFYSDPHERQMFLFVLADQE 54 (138)
T ss_dssp HHHHHHHHTCSEEEE-----CCHHHHHHHHSCCCCCTTSCCEEEEESSSC
T ss_pred HHHHHHHCCCCEEEE-----cCcCceeeecCCCCCCccceEEEEEeCCCC
Confidence 456688899998876 2345677776444 332 678886533
No 108
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=22.27 E-value=1e+02 Score=23.35 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=29.8
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEE
Q psy5981 40 IQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLI 86 (131)
Q Consensus 40 ~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~ 86 (131)
+..+++++.+..+.++|.+-++.-..+...++.+.+.|...|+++..
T Consensus 130 ~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~ 176 (392)
T 3lkb_A 130 VVALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVD 176 (392)
T ss_dssp HHHHHHHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEE
Confidence 34444554433344567655555556777777788888899998753
No 109
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=22.25 E-value=1.8e+02 Score=20.34 Aligned_cols=33 Identities=12% Similarity=0.020 Sum_probs=25.3
Q ss_pred eEEEEecCC-cCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 55 VLVVGGDGR-YFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 55 ~vvVG~D~R-~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
+|+|-+-+. -+++.+++.+++++.+.|++|..+
T Consensus 8 kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~ 41 (211)
T 1ydg_A 8 KLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLL 41 (211)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEE
Confidence 566666665 457889999999999999987655
No 110
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=22.16 E-value=2.1e+02 Score=21.11 Aligned_cols=47 Identities=11% Similarity=-0.171 Sum_probs=30.4
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEE
Q psy5981 39 FIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLI 86 (131)
Q Consensus 39 ~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~ 86 (131)
.++.+++++.+. +.++|.+-++.-..+...++.+.+.|.+.|+++..
T Consensus 126 ~~~~~~~~l~~~-g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~ 172 (368)
T 4eyg_A 126 SSIIIGDWAAKN-GIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVE 172 (368)
T ss_dssp HHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEE
Confidence 344455555432 44566555555566777788888889999998753
No 111
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=21.91 E-value=56 Score=26.06 Aligned_cols=44 Identities=27% Similarity=0.299 Sum_probs=33.4
Q ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchHH
Q psy5981 51 LKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAV 98 (131)
Q Consensus 51 ~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~v 98 (131)
.++.+|.+-.|.. ..++..+.+++..|++|.++...++.|-+.+
T Consensus 153 l~gl~va~vGD~~----~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~ 196 (321)
T 1oth_A 153 LKGLTLSWIGDGN----NILHSIMMSAAKFGMHLQAATPKGYEPDASV 196 (321)
T ss_dssp CTTCEEEEESCSS----HHHHHHHTTTGGGTCEEEEECCTTCCCCHHH
T ss_pred cCCcEEEEECCch----hhHHHHHHHHHHcCCeEEEECCccccCCHHH
Confidence 3456788888964 3677778888889999999987788765544
No 112
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=21.72 E-value=1.2e+02 Score=23.90 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=41.3
Q ss_pred CCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEEecCCccccchH-HHHHHHHhcCceEEEcCCCCCC
Q psy5981 52 KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPA-VSALIRKHILGRLVKVPSSNPS 119 (131)
Q Consensus 52 ~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~-vsfav~~~~~~GImITASHNP~ 119 (131)
++.+|++-.|.+++- .++..+.+++..|++|.++...++.|-+. +.++ ++. |.-++-+|||.
T Consensus 154 ~gl~va~vGD~~~~r--va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~-~~~---g~~~~~~~d~~ 216 (308)
T 1ml4_A 154 DGLKIGLLGDLKYGR--TVHSLAEALTFYDVELYLISPELLRMPRHIVEEL-REK---GMKVVETTTLE 216 (308)
T ss_dssp SSEEEEEESCTTTCH--HHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHH-HHT---TCCEEEESCTH
T ss_pred CCeEEEEeCCCCcCc--hHHHHHHHHHHCCCEEEEECCccccCCHHHHHHH-HHc---CCeEEEEcCHH
Confidence 445688888987643 46777788888999999998778888774 3332 221 23344457764
No 113
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=21.05 E-value=1.1e+02 Score=22.54 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=25.3
Q ss_pred CCeEEEEecCCcCHHH-HHHHHHHHHHHCCCcEEEe
Q psy5981 53 GSVLVVGGDGRYFGDV-AVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 53 ~~~vvVG~D~R~~s~~-~a~~~a~~L~~~Gi~V~~~ 87 (131)
.+.|++.||.+...-. ....+...|.+.|++.+-+
T Consensus 182 ~g~IiL~Hd~~~~t~~~~L~~ii~~l~~~Gy~fvtl 217 (230)
T 2y8u_A 182 GGNIVLAHDIHYWTVASLAERMLQEVNARGLIATTV 217 (230)
T ss_dssp TCCEEEECTTSHHHHHTHHHHHHHHHHHTTCEEECH
T ss_pred CCEEEEEECCCcchHHHHHHHHHHHHHHCCCEEEEh
Confidence 3459999999754332 4566888899999997654
No 114
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=20.93 E-value=1.1e+02 Score=20.29 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=28.1
Q ss_pred HHHHHHHhcccCCCCeEEEEecCC--------cCHHHHHHHHHHHHHHCCCc
Q psy5981 40 IQSILTALGDKLKGSVLVVGGDGR--------YFGDVAVDKIIKISAANGVA 83 (131)
Q Consensus 40 ~~ai~~~~~~~~~~~~vvVG~D~R--------~~s~~~a~~~a~~L~~~Gi~ 83 (131)
...++..+.++....-.|.||-.. ..|..=|+++.+.|...|++
T Consensus 43 L~~ia~~l~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~ 94 (129)
T 2kgw_A 43 LNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVA 94 (129)
T ss_dssp HHHHHHHHHTCTTSCEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555432234467887433 45666688899999999985
No 115
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=20.71 E-value=1.4e+02 Score=21.56 Aligned_cols=41 Identities=10% Similarity=0.029 Sum_probs=19.8
Q ss_pred HHHHHHCCCcEEEecCCccccchHHHHHHHHh-cCceEEEcC
Q psy5981 74 IKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVP 114 (131)
Q Consensus 74 a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~-~~~GImITA 114 (131)
++.|.+.|.+|+.+.-..+.|.+-+.-+...+ ....|+.|.
T Consensus 17 ~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS 58 (240)
T 3mw8_A 17 ASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFIS 58 (240)
T ss_dssp HHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECS
T ss_pred HHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEEC
Confidence 45566677777665444455544322222333 223455554
No 116
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=20.70 E-value=1e+02 Score=22.64 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHCCCcEEEecCCccccchHHHHHHHHhcCceEEEcCCCCCCC--------------CCCCCcccccC
Q psy5981 66 GDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHILGRLVKVPSSNPSR--------------TIRPCPLLITK 131 (131)
Q Consensus 66 s~~~a~~~a~~L~~~Gi~V~~~~~~g~~PTP~vsfav~~~~~~GImITASHNP~~--------------~ng~~~~~~~~ 131 (131)
.+...+.+.+-|...|+++......| -|.-.+.-.+++. +..++|-++|.-.. .+-+||+|+.+
T Consensus 212 ~~~~l~~~~~~l~~~~~~~~~~~~~g-~~~~~I~~~a~~~-~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~ 289 (294)
T 3loq_A 212 KTADLRVMEEVIGAEGIEVHVHIESG-TPHKAILAKREEI-NATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCK 289 (294)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEECS-CHHHHHHHHHHHT-TCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecC-CHHHHHHHHHHhc-CcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEEC
Confidence 45555556667777787754332224 2333333333444 23355555554333 24478887753
No 117
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=20.60 E-value=1e+02 Score=23.81 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=24.4
Q ss_pred EEEEe-cCCcCHHHHHHHHHHHHHHCCCcEEEe
Q psy5981 56 LVVGG-DGRYFGDVAVDKIIKISAANGVAKLIV 87 (131)
Q Consensus 56 vvVG~-D~R~~s~~~a~~~a~~L~~~Gi~V~~~ 87 (131)
||.|+ |.+..+..+++.+++.|.+.|.+|.++
T Consensus 27 II~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~ 59 (280)
T 4gi5_A 27 LIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVS 59 (280)
T ss_dssp EEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEE
Confidence 56666 444456788999999999999888665
No 118
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=20.50 E-value=63 Score=25.73 Aligned_cols=56 Identities=11% Similarity=-0.067 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHH--CCCcEEEecCCccccchHHHHHHHHhcCceEEEcCCCCCCCCC
Q psy5981 65 FGDVAVDKIIKISAA--NGVAKLIVGQNGILSTPAVSALIRKHILGRLVKVPSSNPSRTI 122 (131)
Q Consensus 65 ~s~~~a~~~a~~L~~--~Gi~V~~~~~~g~~PTP~vsfav~~~~~~GImITASHNP~~~n 122 (131)
.+..+...+++.++. .++.|.+= .+-..++.......+.--..|||=+||-|.+.|
T Consensus 56 ~g~~~~~~~v~~aa~~~~~VPValH--LDHg~~~e~~~~ai~~GFtSVMiDgS~~p~eeN 113 (307)
T 3n9r_A 56 MGIDMAVGMVKIMCERYPHIPVALH--LDHGTTFESCEKAVKAGFTSVMIDASHHAFEEN 113 (307)
T ss_dssp HCHHHHHHHHHHHHHHSTTSCEEEE--EEEECSHHHHHHHHHHTCSEEEECCTTSCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEE--CCCCCCHHHHHHHHHhCCCcEEEECCCCCHHHH
Confidence 344555555555655 57777553 245666544433333323469999999998776
No 119
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=20.47 E-value=2.4e+02 Score=21.06 Aligned_cols=46 Identities=17% Similarity=0.118 Sum_probs=30.4
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEEE
Q psy5981 40 IQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLI 86 (131)
Q Consensus 40 ~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~~ 86 (131)
++++++++.+. +.++|.+-++.-..+...++.+.+.+...|++|..
T Consensus 128 ~~~~~~~l~~~-g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~ 173 (375)
T 3i09_A 128 AKGTGSAVVKQ-GGKTWFFLTADYAFGKALEKNTADVVKANGGKVLG 173 (375)
T ss_dssp HHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHc-CCceEEEEecccHHHHHHHHHHHHHHHHcCCEEee
Confidence 44455554432 44566555665566788888888889999998753
No 120
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=20.45 E-value=2.4e+02 Score=20.86 Aligned_cols=46 Identities=13% Similarity=-0.148 Sum_probs=30.1
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEE
Q psy5981 39 FIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKL 85 (131)
Q Consensus 39 ~~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~ 85 (131)
.++.+++++.+. +.++|.+-++.-..+....+.+.+.|...|+++.
T Consensus 138 ~~~~~~~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~ 183 (375)
T 4evq_A 138 IGRATGDAMIKA-GLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVV 183 (375)
T ss_dssp HHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHc-CCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEE
Confidence 344455555432 4456654455555677788888889999999874
No 121
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=20.36 E-value=2e+02 Score=21.23 Aligned_cols=45 Identities=13% Similarity=-0.051 Sum_probs=29.2
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCcCHHHHHHHHHHHHHHCCCcEE
Q psy5981 40 IQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKL 85 (131)
Q Consensus 40 ~~ai~~~~~~~~~~~~vvVG~D~R~~s~~~a~~~a~~L~~~Gi~V~ 85 (131)
++.+++++.+. +.++|.+-++.-..+....+.+.+.|...|+++.
T Consensus 127 ~~~~~~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~ 171 (358)
T 3hut_A 127 GPNNAAWMIGD-GFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVV 171 (358)
T ss_dssp HHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHc-CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEE
Confidence 34444444332 4456654455556677888888889999999875
Done!