RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5981
(131 letters)
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase,
phosphotransferase; HET: SEP; 2.40A {Oryctolagus
cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1
PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Length = 561
Score = 141 bits (358), Expect = 6e-41
Identities = 62/118 (52%), Positives = 85/118 (72%), Gaps = 3/118 (2%)
Query: 4 KSVTVETKVFDGQKPGTSGLRKPTKTFQQ-EHYTENFIQSILTALGD-KLKGSVLVVGGD 61
K VTV+TK + QKPGTSGLRK K FQ +Y ENFIQSI++ + + + + LVVGGD
Sbjct: 2 KIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGD 61
Query: 62 GRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-ILGRLVKVPSSNP 118
GR++ A+ I++I+AANG+ +L++GQNGILSTPAVS +IRK +G ++ S NP
Sbjct: 62 GRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNP 119
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis,
isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1
c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Length = 572
Score = 135 bits (342), Expect = 1e-38
Identities = 48/101 (47%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 7 TVETKVFDGQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDK--LKGSVLVVGGDGRY 64
T+ + GQKPGTSGLRK Q +Y ENF+QSI L +VL VGGDGRY
Sbjct: 10 VQVTQPYAGQKPGTSGLRKKVSEATQPNYLENFVQSIFNTLRKDELKPKNVLFVGGDGRY 69
Query: 65 FGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH 105
F A+ II+++ AN ++++ VGQ G++STPA S IRK
Sbjct: 70 FNRQAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIRKV 110
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A
{Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Length = 570
Score = 116 bits (293), Expect = 9e-32
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 3 FKSVTVETKVFDGQKPGTSGLRK--PTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGG 60
+ K GTSG R +F + H Q+I VG
Sbjct: 51 YVLKPEAGNAEHAVKFGTSGHRGSAGRHSFNEPHILA-IAQAIAEERAKNGITGPCYVGK 109
Query: 61 DGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH 105
D + A ++++ AANGV ++ NG TPAVS I H
Sbjct: 110 DTHALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVH 154
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding,
structural genomics; 2.52A {Thermus thermophilus}
Length = 524
Score = 96.6 bits (241), Expect = 1e-24
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 3 FKSVTVETKVFDGQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKLK----GSVLVV 58
+++ +G + GTSG R + + +TE + +I A+ + L +
Sbjct: 11 YEATPDPQNPLEGVRFGTSGHRG---SSLKATFTEAHVLAIAQAIAELRPSFGATGPLFL 67
Query: 59 GGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHILGRLVKV----- 113
D + A + + AA+G+ + TP VS I +H K
Sbjct: 68 AKDTHALSEPAWATALSVFAAHGIEVRVEADGDYTPTPLVSLAILEHNAHHEAKADGVLL 127
Query: 114 -PSSNP 118
PS NP
Sbjct: 128 TPSHNP 133
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis
of alginate, structural genomics; 1.70A {Thermus
thermophilus}
Length = 464
Score = 42.6 bits (101), Expect = 9e-06
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 19 GTSGLRKPTKTFQQEHYTENFIQSILTALGDKLK---GSVLVVGGDGRYFGDVAVDKIIK 75
GT G R +T + + A G L G ++VVG D R+ D +
Sbjct: 15 GTEGFRGVIA----REFTFATLHRLAEAYGRHLLERGGGLVVVGHDTRFLADAFARALSG 70
Query: 76 ISAANGVAKLIVGQNGILSTPAVSALIRKH 105
A G+ +++ G + TP +S +R
Sbjct: 71 HLAGMGLKVVLL--KGPVPTPLLSFAVRHL 98
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.078
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 32/109 (29%)
Query: 1 MSFKSVTVETKVFD-GQ---------KPGTSGLR----KPTK---TFQQEHYTENFIQSI 43
MS +S VE VF G + G S P + +F QE + ++ +
Sbjct: 1777 MSIES-LVEV-VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA-LQYVVERV 1833
Query: 44 LTALGDKL-------KGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKL 85
G + + V GD R A+D + + + K+
Sbjct: 1834 GKRTGWLVEIVNYNVENQQYVAAGDLR-----ALDTVTNVLNFIKLQKI 1877
Score = 30.0 bits (67), Expect = 0.22
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 25/113 (22%)
Query: 22 GLRKPTKTFQQEHYTENFIQSILT---ALGDKLKGSVLVVGGDGRYFGDVAVDKI----- 73
G+R + + + SIL + + +L + + V+K
Sbjct: 307 GVR-----CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 74 ----IKISAANGVAKLIVGQNGILSTPAVSALIRKHILGRLVKVPSS-NPSRT 121
++IS NG +N ++S P S L ++ R K PS + SR
Sbjct: 362 AGKQVEISLVNG------AKNLVVSGPPQS-LYGLNLTLRKAKAPSGLDQSRI 407
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia
sympodialis}
Length = 334
Score = 28.3 bits (62), Expect = 0.71
Identities = 17/105 (16%), Positives = 23/105 (21%), Gaps = 24/105 (22%)
Query: 47 LGDKLKGSVLVVGGDGRYFGDVAVD--------------KIIKISA----------ANGV 82
G A D I ++SA +G
Sbjct: 121 FEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGN 180
Query: 83 AKLIVGQNGILSTPAVSALIRKHILGRLVKVPSSNPSRTIRPCPL 127
G +GI P + LI L S P P +
Sbjct: 181 GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKI 225
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 27.3 bits (61), Expect = 1.5
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 45 TALGDKLKGSVLVVGGD-----GRYFGDVAVDKIIKIS 77
T +G K V V+ D G D K+ +IS
Sbjct: 31 TIVGVKFNNGV-VIAADTRSTQGPIVADKNCAKLHRIS 67
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 1.8
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 102 IRKHILGRLVKV--PSSNPSRTIR 123
++K + L K+ S P+ I+
Sbjct: 22 LKK-LQASL-KLYADDSAPALAIK 43
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative;
rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG;
2.30A {Leishmania major} PDB: 2oef_A*
Length = 505
Score = 27.0 bits (59), Expect = 2.1
Identities = 9/76 (11%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 26 PTKTFQQEHYT--ENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVA 83
P HY F + + + ++ + V G ++ + + I + +
Sbjct: 412 PVVDLDSAHYKMMNGFEKLVQHGVPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTDSAS 471
Query: 84 KLIVGQNGILSTPAVS 99
++ L+ S
Sbjct: 472 AFVIPDGAKLNDTTAS 487
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 26.5 bits (59), Expect = 2.5
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 45 TALGDKLKGSVLVVGGD-----GRYFGDVAVDKIIKIS 77
T +G K V V+ D G D K+ +IS
Sbjct: 2 TIVGVKFNNGV-VIAADTRSTQGPIVADKNCAKLHRIS 38
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_H* 3une_H
Length = 234
Score = 25.7 bits (57), Expect = 4.2
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Query: 45 TALGDKLKGSVLVVGGD-----GRYFGDVAVDKIIKIS 77
T G K + V+G D G D KI IS
Sbjct: 2 TIAGVVYKDGI-VLGADTRATEGMVVADKNCSKIHFIS 38
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 25.6 bits (57), Expect = 4.5
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 45 TALGDKLKGSVLVVGGD-----GRYFGDVAVDKIIKIS 77
T L K + V +V D G Y V K+I+I+
Sbjct: 2 TTLAFKFRHGV-IVAADSRATAGAYIASQTVKKVIEIN 38
>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase;
beta, beta alpha domain; 1.90A {Geobacillus
kaustophilus}
Length = 161
Score = 25.6 bits (57), Expect = 4.5
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 43 ILTALGDKLKGSVLVVGGDGR----YFGDVAVDKIIKISAANGVAKLIV 87
+ AL G+VLVV G G GD + +I+ G+A +I+
Sbjct: 46 VREALETVPPGTVLVVDGKGSRRVALLGDR----LAQIACERGLAGVII 90
>1vi4_A Regulator of ribonuclease acivity A protein 1; structural
genomics, unknown function; 1.87A {Vibrio cholerae}
SCOP: c.8.7.1
Length = 174
Score = 25.6 bits (57), Expect = 4.9
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 43 ILTALGDKLKGSVLVVGGDGR----YFGDVAVDKIIKISAANGVAKLIV 87
+ L KG VLVV G G GD + ++ N +I+
Sbjct: 51 VRDVLSQNGKGKVLVVDGHGSCHKALMGDQ----LAILAIKNDWEGVII 95
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase,
phosphoserine, enzyme complex, enzyme-metal complex,
isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa}
SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A*
1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A*
3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Length = 463
Score = 25.7 bits (57), Expect = 5.0
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 36 TENFIQSILTALGDKLK---GSVLVVGGDGR 63
T I A+G + + VG DGR
Sbjct: 28 TAETAYWIGRAIGSESLARGEPCVAVGRDGR 58
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida
albicans} PDB: 2dkc_A* 2dkd_A*
Length = 544
Score = 25.7 bits (56), Expect = 5.0
Identities = 10/81 (12%), Positives = 21/81 (25%), Gaps = 4/81 (4%)
Query: 26 PTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIK-ISAANGVAK 84
++ E + D + +V+ D R I +
Sbjct: 105 NDSEGEKNSLVEVIKNLVSDLKIDLSIPANVVIARDSRESSPALSMATIDGFQSVPNTKY 164
Query: 85 LIVGQNGILSTPAVSALIRKH 105
G + +TP + + R
Sbjct: 165 QDFG---LFTTPELHYVTRTL 182
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 25.7 bits (57), Expect = 5.6
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 45 TALGDKLKGSVLVVGGD-----GRYFGDVAVDKIIKIS 77
T G + V ++G D D + +KI I+
Sbjct: 2 TIAGLVFRDGV-ILGADTRATNDSVVADKSCEKIHFIA 38
>1nxj_A Probable S-adenosylmethionine:2- demethylmenaquinone
methyltransferase; beta/BETA/alpha domain, structural
genomics, PSI; HET: TLA; 1.90A {Mycobacterium
tuberculosis} SCOP: c.8.7.1
Length = 183
Score = 25.3 bits (56), Expect = 5.8
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 43 ILTALGDKLKGSVLVVGGDGR----YFGDVAVDKIIKISAANGVAKLIV 87
+ + L G VLV+ G G GDV I +++ + G LIV
Sbjct: 77 LKSVLSQPSAGGVLVIDGAGSLHTALVGDV----IAELARSTGWTGLIV 121
>3c8o_A Regulator of ribonuclease activity A; RRAA, PAO1, RNAse E
regulater, hydrolase regulator; HET: PGE PG4; 1.90A
{Pseudomonas aeruginosa}
Length = 162
Score = 25.2 bits (56), Expect = 6.1
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 43 ILTALGDKLKGSVLVVGGDGR----YFGDVAVDKIIKISAANGVAKLIV 87
+ + KG VLVV G G GD+ + + +A NG ++V
Sbjct: 48 VKEQVDKDGKGKVLVVDGGGSLRRALLGDM----LAEKAAKNGWEGIVV 92
>1j3l_A Demethylmenaquinone methyltransferase; vitamine K2, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.30A {Thermus thermophilus} SCOP:
c.8.7.1
Length = 164
Score = 25.2 bits (56), Expect = 6.3
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 43 ILTALGDKLKGSVLVV--GGDGR--YFGDVAVDKIIKISAANGVAKLIV 87
+ L ++ G VL V GG R G + + + G A ++V
Sbjct: 47 VRKVLEEEGAGQVLFVDGGGSLRTALLGGN----LARRAWEKGWAGVVV 91
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural
genomics, seattle structural genomics center for
infectious disease; 1.95A {Burkholderia thailandensis}
Length = 485
Score = 25.7 bits (57), Expect = 6.3
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 36 TENFIQSILTALGDKLK---GSVLVVGGDGR 63
+ +SI A G +++ G +VV DGR
Sbjct: 42 DADVARSIGRAFGSEVRAQGGDAVVVARDGR 72
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase;
1.70A {Streptomyces hygroscopicus} PDB: 3t7d_A*
Length = 496
Score = 25.4 bits (56), Expect = 6.5
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 30 FQQEHYTENFIQSILTALGD-KLKGSVLVVGGDGR 63
F + + NF++S+ L D ++ + V G
Sbjct: 213 FFADRWCRNFLESVADLLPDARIDREAMTVEWRGH 247
>1q5x_A Regulator of RNAse E activity A; 3-layer sandwich, alpha-beta
structure, parallel beta sheet, antiparallel beta
sheet, hydrolase inhibitor; 2.00A {Escherichia coli}
SCOP: c.8.7.1
Length = 161
Score = 24.9 bits (55), Expect = 6.9
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 43 ILTALGDKLKGSVLVVGGDGRYFGDVAV--DKIIKISAANGVAKLIV 87
+ L +G VLVV G G A+ ++ +++ N L++
Sbjct: 48 LYDLLEQNGRGRVLVVDGGGSV--RRALVDAELARLAVQNEWEGLVI 92
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 25.2 bits (56), Expect = 8.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 90 NGILSTPAVSALIRKHILGR 109
NGIL PA ALI I+ +
Sbjct: 343 NGILLAPATGALISDLIMNK 362
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.382
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,933,565
Number of extensions: 110383
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 43
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.8 bits)