RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5981
         (131 letters)



>d1kfia1 c.84.1.1 (A:3-205) Exocytosis-sensitive phosphoprotein,
           pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
          Length = 203

 Score =  108 bits (270), Expect = 3e-31
 Identities = 48/102 (47%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 6   VTVETKVFDGQKPGTSGLRKPTKTFQQEHYTENFIQSILTALG--DKLKGSVLVVGGDGR 63
               T+ + GQKPGTSGLRK      Q +Y ENF+QSI   L   +    +VL VGGDGR
Sbjct: 7   RVQVTQPYAGQKPGTSGLRKKVSEATQPNYLENFVQSIFNTLRKDELKPKNVLFVGGDGR 66

Query: 64  YFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH 105
           YF   A+  II+++ AN ++++ VGQ G++STPA S  IRK 
Sbjct: 67  YFNRQAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIRKV 108


>d3pmga1 c.84.1.1 (A:1-190) Phosphoglucomutase {Rabbit (Oryctolagus
           cuniculus) [TaxId: 9986]}
          Length = 190

 Score = 83.2 bits (205), Expect = 1e-21
 Identities = 56/101 (55%), Positives = 76/101 (75%), Gaps = 2/101 (1%)

Query: 7   TVETKVFDGQKPGTSGLRKPTKTFQQ-EHYTENFIQSILTALGD-KLKGSVLVVGGDGRY 64
           TV+TK +  QKPGTSGLRK  K FQ   +Y ENFIQSI++ +   + + + LVVGGDGR+
Sbjct: 5   TVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGRF 64

Query: 65  FGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH 105
           +   A+  I++I+AANG+ +L++GQNGILSTPAVS +IRK 
Sbjct: 65  YMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKI 105


>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A
           (TM0820) {Thermotoga maritima [TaxId: 2336]}
          Length = 398

 Score = 29.3 bits (64), Expect = 0.14
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 26  PTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVAKL 85
           PTK           I   +   G +    VL + G G    +   D+++     +G+  +
Sbjct: 12  PTKIVFGRGTIPK-IGEEIKNAGIR---KVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWV 67

Query: 86  IVGQNGILSTPAVSALIRKH 105
            V  +G+   P +S +    
Sbjct: 68  EV--SGVKPNPVLSKVHEAV 85


>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 359

 Score = 27.3 bits (59), Expect = 0.55
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 26 PTKTFQQEHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISAANGVA 83
          PT  F  E   E    +I+  LG +     LVV G      + ++D + K+     ++
Sbjct: 7  PTDVFFGEKILEK-RGNIIDLLGKR----ALVVTGKSSSKKNGSLDDLKKLLDETEIS 59


>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922,
          C-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 278

 Score = 26.1 bits (56), Expect = 1.5
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 4/35 (11%)

Query: 36 TENFIQSILTALG-DKLKGS---VLVVGGDGRYFG 66
          T   ++S+L     D  KG+   VL++ G   Y G
Sbjct: 1  TREMVRSLLPERPRDSHKGTYGKVLIIAGSRLYSG 35


>d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea
           virus [TaxId: 11099]}
          Length = 588

 Score = 25.2 bits (55), Expect = 3.0
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 12  VFDGQKPGTSGLRKPTKTFQQEHYTENFIQSILTALGDKL-KGSVLVVGGDGRYFGDVAV 70
           V D  + G   + K  +  Q          +I   + + + +  V++ G +G+       
Sbjct: 178 VSDDWQAGDLVVEKRPRVIQYPEAKTRL--AITKVMYNWVKQQPVVIPGYEGKTPLFNIF 235

Query: 71  DKIIK 75
           DK+ K
Sbjct: 236 DKVRK 240


>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
          {Escherichia coli [TaxId: 562]}
          Length = 197

 Score = 24.7 bits (52), Expect = 4.1
 Identities = 3/28 (10%), Positives = 11/28 (39%)

Query: 36 TENFIQSILTALGDKLKGSVLVVGGDGR 63
              I   +  + +++    +++G  G 
Sbjct: 3  PAKIIDDAVARIREQVGDDKVILGLSGG 30


>d1f2ri_ d.15.2.1 (I:) Inhibitor of caspase-activated DNase (ICAD),
           DFF45, N-terminal domain {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 100

 Score = 23.7 bits (51), Expect = 5.4
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 107 LGRLVKVPSSNPSRTIRPC 125
           L R    P  +  R ++PC
Sbjct: 3   LSRGASAPDPDDVRPLKPC 21


>d2a29a1 d.220.1.1 (A:316-451) Potassium-transporting ATPase B
           chain, KdpB {Escherichia coli [TaxId: 562]}
          Length = 136

 Score = 23.5 bits (50), Expect = 7.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 53  GSVLVVGGDGRYFGDVAVDKIIK 75
            + LVV    R  G +A+  I+K
Sbjct: 113 ATPLVVVEGSRVLGVIALKDIVK 135


>d1c8ba_ c.56.1.2 (A:) Germination protease {Bacillus megaterium
           [TaxId: 1404]}
          Length = 371

 Score = 24.0 bits (52), Expect = 8.2
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 9/54 (16%)

Query: 15  GQKPGT------SGLRKPTKTFQQEHYTE---NFIQSILTALGDKLKGSVLVVG 59
           G+K G        G+R+     Q+E   E     +   + +L      S LVVG
Sbjct: 66  GKKKGRYVTLESVGIREQDTEKQEEAMEEVFAKELNFFIKSLNIPDDASCLVVG 119


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.382 

Gapped
Lambda     K      H
   0.267   0.0525    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 460,037
Number of extensions: 19407
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 16
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.7 bits)