BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5982
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P41512|TOP1_XENLA DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1
Length = 829
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 44/50 (88%)
Query: 1 MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
+ + KK A+ R++EQL+KLEVQ TD+EENK IALGTSKLNYLDPRISVAW
Sbjct: 739 LVESKKKAVQRIEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAW 788
>sp|Q07050|TOP1_CRIGR DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 PE=2 SV=1
Length = 767
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 44/50 (88%)
Query: 1 MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
+ + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNYLDPRI+VAW
Sbjct: 685 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAW 734
>sp|P11387|TOP1_HUMAN DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2
Length = 765
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 44/50 (88%)
Query: 1 MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
+ + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNYLDPRI+VAW
Sbjct: 683 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAW 732
>sp|Q7YR26|TOP1_CHLAE DNA topoisomerase 1 OS=Chlorocebus aethiops GN=TOP1 PE=2 SV=1
Length = 767
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 44/50 (88%)
Query: 1 MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
+ + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNYLDPRI+VAW
Sbjct: 685 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAW 734
>sp|Q9WUL0|TOP1_RAT DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1
Length = 767
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 44/50 (88%)
Query: 1 MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
+ + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNYLDPRI+VAW
Sbjct: 685 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAW 734
>sp|Q04750|TOP1_MOUSE DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2
Length = 767
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 44/50 (88%)
Query: 1 MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
+ + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNYLDPRI+VAW
Sbjct: 685 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAW 734
>sp|P30189|TOP1_DROME DNA topoisomerase 1 OS=Drosophila melanogaster GN=Top1 PE=1 SV=1
Length = 972
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 43/48 (89%)
Query: 3 DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
+KK L RL++QL KLE+QETD++ENKTIALGTSKLNYLDPRISVAW
Sbjct: 892 EKKGKQLERLRDQLKKLELQETDRDENKTIALGTSKLNYLDPRISVAW 939
>sp|A9Q1D5|TOP1M_PANTR DNA topoisomerase I, mitochondrial OS=Pan troglodytes GN=TOP1MT
PE=2 SV=1
Length = 601
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 34/48 (70%), Positives = 41/48 (85%)
Query: 3 DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
+KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNYLDPRIS+AW
Sbjct: 521 EKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAW 568
>sp|Q969P6|TOP1M_HUMAN DNA topoisomerase I, mitochondrial OS=Homo sapiens GN=TOP1MT PE=2
SV=1
Length = 601
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 34/48 (70%), Positives = 41/48 (85%)
Query: 3 DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
+KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNYLDPRIS+AW
Sbjct: 521 EKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAW 568
>sp|O17966|TOP1_CAEEL DNA topoisomerase 1 OS=Caenorhabditis elegans GN=top-1 PE=2 SV=1
Length = 806
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 39/48 (81%)
Query: 3 DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
+K + RLKEQL KL++ TDK+ENK IALGTSKLNY+DPRI+VAW
Sbjct: 723 EKAQKKYDRLKEQLKKLKISRTDKDENKQIALGTSKLNYIDPRITVAW 770
>sp|Q8R4U6|TOP1M_MOUSE DNA topoisomerase I, mitochondrial OS=Mus musculus GN=Top1mt PE=2
SV=1
Length = 593
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/47 (63%), Positives = 39/47 (82%)
Query: 4 KKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
+K+ L +L+EQL +L + TDKEENK +ALGT+KLNYLDPRIS+AW
Sbjct: 514 QKQRRLLKLEEQLARLCAKATDKEENKQVALGTAKLNYLDPRISIAW 560
>sp|Q6IM78|TOP1M_RAT DNA topoisomerase I, mitochondrial OS=Rattus norvegicus GN=Top1mt
PE=2 SV=1
Length = 593
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/47 (63%), Positives = 39/47 (82%)
Query: 4 KKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
+K+ L +L+EQL +L + TDKEENK +ALGT+KLNYLDPRIS+AW
Sbjct: 514 QKQQRLLKLEEQLARLCTKATDKEENKQVALGTAKLNYLDPRISIAW 560
>sp|Q54RC3|TOP1_DICDI DNA topoisomerase 1 OS=Dictyostelium discoideum GN=top1 PE=3 SV=1
Length = 893
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%)
Query: 6 KTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
K + + +EQ+ K E+ +T K+E KT+ALGTSK+NYLDPRI+VAW
Sbjct: 818 KEKIAKYEEQIKKQEILKTGKDELKTVALGTSKINYLDPRITVAW 862
>sp|P30181|TOP1_ARATH DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1
Length = 916
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 11 RLKEQLLKLEVQETD---KEENKTIALGTSKLNYLDPRISVAW 50
++ +Q K+E E D KE+ KT+ALGTSK+NYLDPRI+VAW
Sbjct: 839 KIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVAW 881
>sp|P93119|TOP1_DAUCA DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 SV=1
Length = 790
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 30/36 (83%)
Query: 15 QLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
++ K+E + KE+ KT+ALGTSK+NYLDPRI+VAW
Sbjct: 723 KIEKMERDKETKEDLKTVALGTSKINYLDPRITVAW 758
>sp|P07799|TOP1_SCHPO DNA topoisomerase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=top1 PE=1 SV=2
Length = 814
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 32/42 (76%)
Query: 9 LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
L +L E++ + Q DK+ENKT ALGTSK+NY+DPR++ ++
Sbjct: 741 LNKLNERINVMRTQMIDKDENKTTALGTSKINYIDPRLTYSF 782
>sp|P04786|TOP1_YEAST DNA topoisomerase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=TOP1 PE=1 SV=2
Length = 769
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 2 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
+K K + +L++++ +Q DKEEN ++LGTSK+NY+DPR+SV +
Sbjct: 688 VEKIKAQVEKLEQRIQTSSIQLKDKEENSQVSLGTSKINYIDPRLSVVF 736
>sp|Q00313|TOP1_CANAX DNA topoisomerase 1 OS=Candida albicans GN=TOP1 PE=3 SV=1
Length = 778
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 2 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAWYNLGFD 56
+K K + L+ ++L + +Q DKE+N ++LGTSK+NY+DPR+ + ++ FD
Sbjct: 697 VEKLKQQIETLENRILNVSIQLKDKEDNSEVSLGTSKMNYIDPRL-IVMFSKKFD 750
>sp|P41511|TOP1_USTMA DNA topoisomerase 1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=TOP1 PE=3 SV=2
Length = 1019
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 14 EQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
E + K E + +K +AL TSKLNY+DPRI++AW
Sbjct: 795 EMIKKQEAELVNKNNTSDVALSTSKLNYIDPRITLAW 831
>sp|Q756F4|RAD52_ASHGO DNA repair and recombination protein RAD52 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RAD52 PE=3 SV=1
Length = 435
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 1 MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAWYNLGFDFYNW 60
M D KK +G + + KL+ + + +K + GT+++ Y++ ++ N F F W
Sbjct: 1 MADDKKGQMGNVDDIQAKLDKRLGPEYISKRVGHGTTRVAYIEGWKAINLANQIFGFNGW 60
Query: 61 SGKTKKV 67
S + K V
Sbjct: 61 SSEVKSV 67
>sp|O67323|SYA_AQUAE Alanine--tRNA ligase OS=Aquifex aeolicus (strain VF5) GN=alaS PE=1
SV=1
Length = 867
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 5 KKTALGRLKEQLLKLEVQETDKEEN 29
++ + RLK++LLKL+++E KEEN
Sbjct: 737 REREIQRLKQELLKLQIREVVKEEN 761
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,952,697
Number of Sequences: 539616
Number of extensions: 1354608
Number of successful extensions: 2988
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2967
Number of HSP's gapped (non-prelim): 30
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)