Query psy5982
Match_columns 102
No_of_seqs 109 out of 193
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 23:33:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14370 Topo_C_assoc: C-termi 100.0 7E-40 1.5E-44 219.6 2.6 71 12-97 1-71 (71)
2 KOG0981|consensus 100.0 1.2E-32 2.7E-37 239.7 3.6 81 2-97 678-759 (759)
3 smart00435 TOPEUc DNA Topoisom 99.9 4.2E-24 9.1E-29 177.7 2.6 52 2-53 338-389 (391)
4 cd00659 Topo_IB_C DNA topoisom 43.9 9 0.00019 29.9 0.4 19 35-53 199-217 (218)
5 PF14770 TMEM18: Transmembrane 41.3 12 0.00027 27.1 0.8 15 37-51 70-87 (123)
6 COG1801 Uncharacterized conser 40.2 51 0.0011 26.4 4.1 56 31-98 2-69 (263)
7 PF04098 Rad52_Rad22: Rad52/22 36.5 17 0.00037 26.4 0.9 29 37-65 28-56 (154)
8 KOG0930|consensus 36.5 32 0.0007 29.6 2.6 30 24-54 57-86 (395)
9 PRK10302 hypothetical protein; 33.2 80 0.0017 25.4 4.3 55 32-98 2-61 (272)
10 COG4594 FecB ABC-type Fe3+-cit 31.3 46 0.00099 28.2 2.7 36 5-42 165-200 (310)
11 PF07820 TraC: TraC-like prote 27.1 65 0.0014 22.9 2.5 23 3-25 5-27 (92)
12 PF11471 Sugarporin_N: Maltopo 25.7 66 0.0014 20.7 2.1 23 4-26 29-51 (60)
13 KOG3257|consensus 25.4 9.6 0.00021 29.7 -2.1 41 48-94 49-89 (168)
14 TIGR02743 TraW type-F conjugat 25.3 46 0.001 25.9 1.6 17 33-49 76-95 (202)
15 PF09340 NuA4: Histone acetylt 24.8 85 0.0018 21.0 2.6 26 3-28 5-30 (80)
16 PF01904 DUF72: Protein of unk 24.2 1E+02 0.0022 23.4 3.3 30 67-98 21-51 (230)
17 COG5509 Uncharacterized small 22.8 72 0.0016 21.5 1.9 30 2-31 27-56 (65)
18 PF06698 DUF1192: Protein of u 22.0 70 0.0015 20.8 1.7 29 2-30 23-51 (59)
19 PRK13738 conjugal transfer pil 21.9 50 0.0011 26.0 1.2 54 33-93 74-142 (209)
20 PF07611 DUF1574: Protein of u 20.8 1.2E+02 0.0025 25.7 3.2 42 23-65 57-99 (345)
No 1
>PF14370 Topo_C_assoc: C-terminal topoisomerase domain; PDB: 1TL8_A 1K4T_A 1A36_A 1RR8_C 1T8I_A 1SC7_A 1EJ9_A 1LPQ_A 1RRJ_A 1A31_A ....
Probab=100.00 E-value=7e-40 Score=219.64 Aligned_cols=71 Identities=44% Similarity=0.786 Sum_probs=58.2
Q ss_pred HHHHHHhhcchhhhhhccceeeeecccccccCchhhHhhhhcccCcccCCCCcceeeeccccccCchHHHHhhhhhhccC
Q psy5982 12 LKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAIKRRIDWDLSG 91 (102)
Q Consensus 12 l~erI~kl~~q~~dKeeNK~VALGTSKiNYiDPRItVAWCKk~~~~~~~~~~~~~~v~ie~~~~~~s~tl~~kf~Wa~~~ 91 (102)
+++||+++++|+.+||+||+|||||||+|||||||||||||++ + |||| +|||+|||+||.|||++
T Consensus 1 ~~~ri~k~~~~~~~k~~~K~vaLgTSKiNYlDPRItvAWck~~-~-----------VPie---Kifsktlr~KF~WA~~~ 65 (71)
T PF14370_consen 1 IKERIKKLELQLKDKEDNKTVALGTSKINYLDPRITVAWCKRH-E-----------VPIE---KIFSKTLREKFAWAMDV 65 (71)
T ss_dssp -HHHHHHHHHHHHHHHHTSCE-SHHHHHHTS-HHHHHHHHHHT-T-------------GG---GTS-HHHHHHTHHHCCS
T ss_pred ChHHHHHHHHHHHHHhhcceeecchhhhhhcCcHHHHHHHHHh-C-----------CcHH---HHhhHHHHHhhhHHHcC
Confidence 5799999999999999999999999999999999999999994 4 8988 56899999999999999
Q ss_pred CCCccc
Q psy5982 92 LPNTRI 97 (102)
Q Consensus 92 ~p~~~~ 97 (102)
+|+|+|
T Consensus 66 ~~~~~F 71 (71)
T PF14370_consen 66 DEDFKF 71 (71)
T ss_dssp -TT---
T ss_pred CCCCCC
Confidence 999987
No 2
>KOG0981|consensus
Probab=99.97 E-value=1.2e-32 Score=239.68 Aligned_cols=81 Identities=48% Similarity=0.807 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHhhcchhhhhhccceeeeecccccccCchhhHhhhhcccCcccCCCCcceeeeccccccCchHHH
Q psy5982 2 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAI 81 (102)
Q Consensus 2 ~Ek~e~~iekl~erI~kl~~q~~dKeeNK~VALGTSKiNYiDPRItVAWCKk~~~~~~~~~~~~~~v~ie~~~~~~s~tl 81 (102)
+|+++++++++++||++|++|++|||+||+|||||||||||||||||||||+ +| |||| +||++|+
T Consensus 678 ~Ek~~k~~~~l~eqi~kl~~q~~dkeenK~vALGTSKiNYiDPRitvawcKk-~d-----------VPiE---Kif~Kt~ 742 (759)
T KOG0981|consen 678 VEKKEKKLERLEEQLKKLEIQMTDKEENKQVALGTSKLNYIDPRITVAWCKK-HD-----------VPIE---KIFTKTL 742 (759)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhcceeecccccccccCCceeeeehhc-cC-----------CcHH---HHhhHHH
Confidence 6899999999999999999999999999999999999999999999999999 56 9999 5779999
Q ss_pred HhhhhhhccCC-CCccc
Q psy5982 82 KRRIDWDLSGL-PNTRI 97 (102)
Q Consensus 82 ~~kf~Wa~~~~-p~~~~ 97 (102)
|+||.|||+.. |++||
T Consensus 743 reKF~WA~d~~de~~~f 759 (759)
T KOG0981|consen 743 REKFAWAIDMADEEYRF 759 (759)
T ss_pred HHHHHHHhhcCCcccCC
Confidence 99999999999 99987
No 3
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=99.88 E-value=4.2e-24 Score=177.69 Aligned_cols=52 Identities=65% Similarity=0.993 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHHhhcchhhhhhccceeeeecccccccCchhhHhhhhc
Q psy5982 2 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAWYNL 53 (102)
Q Consensus 2 ~Ek~e~~iekl~erI~kl~~q~~dKeeNK~VALGTSKiNYiDPRItVAWCKk 53 (102)
+++.+++++++++||++|++|++|||+||+|||||||||||||||||||||+
T Consensus 338 ~~~~~k~~~~~~~~i~k~~~q~~~ke~nk~vaLgTSk~NY~DPRitvawck~ 389 (391)
T smart00435 338 EEKKKKQIERLEERIEKLEVQATDKEENKTVALGTSKINYIDPRITVAWCKK 389 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCeeeecccchhhccCCcceeEeecc
Confidence 4667789999999999999999999999999999999999999999999999
No 4
>cd00659 Topo_IB_C DNA topoisomerase IB, C-terminal catalytic domain. Topoisomerase I promotes the relaxation of both positive and negative DNA superhelical tension by introducing a transient single-stranded break in duplex DNA. This function is vital for the processes of replication, transcription, and recombination. Unlike Topo IA enzymes, Topo IB enzymes do not require a single-stranded region of DNA or metal ions for their function. The type IB family of DNA topoisomerases includes eukaryotic nuclear topoisomerase I, topoisomerases of poxviruses and bacterial versions of Topo IB. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their C-terminal catalytic domain and the overall reaction mechanism with tyrosine recombinases. The C-terminal catalytic domain in topoisomerases is linked to a divergent N-terminal domain that shows no sequence or structure similarity to the N-terminal domains of tyrosine recombinases.
Probab=43.87 E-value=9 Score=29.93 Aligned_cols=19 Identities=58% Similarity=1.108 Sum_probs=15.7
Q ss_pred ecccccccCchhhHhhhhc
Q psy5982 35 GTSKLNYLDPRISVAWYNL 53 (102)
Q Consensus 35 GTSKiNYiDPRItVAWCKk 53 (102)
..++-+||||+|.-+|++.
T Consensus 199 av~r~sYi~P~v~~~~~~~ 217 (218)
T cd00659 199 AISKINYIDPRITVAWCKK 217 (218)
T ss_pred chhHHHccCHHHHHHhhcC
Confidence 4568889999999999764
No 5
>PF14770 TMEM18: Transmembrane protein 18
Probab=41.28 E-value=12 Score=27.08 Aligned_cols=15 Identities=53% Similarity=0.749 Sum_probs=12.3
Q ss_pred ccccccCch---hhHhhh
Q psy5982 37 SKLNYLDPR---ISVAWY 51 (102)
Q Consensus 37 SKiNYiDPR---ItVAWC 51 (102)
|+-||-||+ |++.||
T Consensus 70 s~qnYFDs~G~Fisvv~s 87 (123)
T PF14770_consen 70 SKQNYFDSSGVFISVVFS 87 (123)
T ss_pred hhccCcCCCCeeehHHHH
Confidence 345999999 888887
No 6
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=40.24 E-value=51 Score=26.36 Aligned_cols=56 Identities=27% Similarity=0.536 Sum_probs=36.2
Q ss_pred eeeeecccccccC------ch-hh----HhhhhcccCcccCCCCcceeeecc-ccccCchHHHHhhhhhhccCCCCcccc
Q psy5982 31 TIALGTSKLNYLD------PR-IS----VAWYNLGFDFYNWSGKTKKVIKVE-SFNSLPSQAIKRRIDWDLSGLPNTRIA 98 (102)
Q Consensus 31 ~VALGTSKiNYiD------PR-It----VAWCKk~~~~~~~~~~~~~~v~ie-~~~~~~s~tl~~kf~Wa~~~~p~~~~~ 98 (102)
.+-+|||--.|-+ |. ++ .+..-.+|| .|-|. .|+.+++...-+ .|+-+++++||||
T Consensus 2 ~i~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~----------~VEiN~TFYa~p~~~t~~--~W~~~~p~~FrFs 69 (263)
T COG1801 2 MIYIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFN----------TVEINSTFYAPPSPETVL--RWAEETPDDFRFS 69 (263)
T ss_pred ceEEeecCCCcccccccccCcccchhhHHHHHhccCC----------EEEECCcccCCCCHHHHH--HHHHhCCCCeEEE
Confidence 4668888777666 21 11 333444566 66665 677766654433 4999999999997
No 7
>PF04098 Rad52_Rad22: Rad52/22 family double-strand break repair protein; InterPro: IPR007232 The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to Rad52. These proteins contain two helix-hairpin-helix motifs [].; GO: 0006281 DNA repair, 0006310 DNA recombination; PDB: 1KN0_I 1H2I_U.
Probab=36.53 E-value=17 Score=26.36 Aligned_cols=29 Identities=38% Similarity=0.590 Sum_probs=22.5
Q ss_pred ccccccCchhhHhhhhcccCcccCCCCcc
Q psy5982 37 SKLNYLDPRISVAWYNLGFDFYNWSGKTK 65 (102)
Q Consensus 37 SKiNYiDPRItVAWCKk~~~~~~~~~~~~ 65 (102)
+++-||+.|-.+.-+.+-|-|=+||-...
T Consensus 28 ~~~~yl~~~~vi~~aN~vfGfngWs~~i~ 56 (154)
T PF04098_consen 28 SKLPYLESRKVIELANEVFGFNGWSSEII 56 (154)
T ss_dssp -EEEEE-HHHHHHHHHHHH-TTTEEEEEE
T ss_pred ccccccCHHHHHHHHHHHhCcCCCceEEE
Confidence 67999999999999999888889986544
No 8
>KOG0930|consensus
Probab=36.46 E-value=32 Score=29.63 Aligned_cols=30 Identities=30% Similarity=0.596 Sum_probs=25.1
Q ss_pred hhhhccceeeeecccccccCchhhHhhhhcc
Q psy5982 24 TDKEENKTIALGTSKLNYLDPRISVAWYNLG 54 (102)
Q Consensus 24 ~dKeeNK~VALGTSKiNYiDPRItVAWCKk~ 54 (102)
+.++.||.|++|--|.| +||-=-+.|.-.+
T Consensus 57 kt~q~~k~~~~GRKKFN-mDP~Kgiq~l~e~ 86 (395)
T KOG0930|consen 57 KTKQRNKQVAMGRKKFN-MDPKKGIQFLIEN 86 (395)
T ss_pred hhHHHhHHHhhchhhcC-CChHHHhHHHHHc
Confidence 56789999999999998 7888777777664
No 9
>PRK10302 hypothetical protein; Provisional
Probab=33.24 E-value=80 Score=25.41 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=36.4
Q ss_pred eeeecccccccCch----hhHhhhhcccCcccCCCCcceeeecc-ccccCchHHHHhhhhhhccCCCCcccc
Q psy5982 32 IALGTSKLNYLDPR----ISVAWYNLGFDFYNWSGKTKKVIKVE-SFNSLPSQAIKRRIDWDLSGLPNTRIA 98 (102)
Q Consensus 32 VALGTSKiNYiDPR----ItVAWCKk~~~~~~~~~~~~~~v~ie-~~~~~~s~tl~~kf~Wa~~~~p~~~~~ 98 (102)
|-+|||--.|=|=+ =..++..++|+ .|-|. .|+.+++...-+ .|+.+++++|+|+
T Consensus 2 i~IGtsgWsy~~W~g~~~~~L~~Ya~~F~----------tVEiNsTFY~~P~~~t~~--~W~~~~P~~F~F~ 61 (272)
T PRK10302 2 IYIGLPQWQHPKWVRLGITSLEDYARHFN----------CVEGNTTLYALPKPEIVL--RWRDMTTDDFRFC 61 (272)
T ss_pred EEEEeCCCCCccccCccHHHHHHHHhhCC----------EEEECccccCCCCHHHHH--HHHHhCCCCcEEE
Confidence 45788766654332 22344445565 56666 688777766555 4999999999996
No 10
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=31.27 E-value=46 Score=28.16 Aligned_cols=36 Identities=17% Similarity=0.344 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhccceeeeeccccccc
Q psy5982 5 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 42 (102)
Q Consensus 5 ~e~~iekl~erI~kl~~q~~dKeeNK~VALGTSKiNYi 42 (102)
-|+++++|+++|...+.++.- +.|+ +++|+|+-.-+
T Consensus 165 ~ekrLa~Hkk~ia~~k~~l~k-~~~~-~~~Gvsr~~~f 200 (310)
T COG4594 165 MEKRLAKHKKKIAEIKKKLPK-GTNS-LAIGVSRATQF 200 (310)
T ss_pred HHHHHHHHHHHHHHHHHhCcC-Ccce-eeEEecchhhe
Confidence 478999999999999887753 3444 99999975533
No 11
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=27.07 E-value=65 Score=22.86 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHhhcchhhh
Q psy5982 3 DKKKTALGRLKEQLLKLEVQETD 25 (102)
Q Consensus 3 Ek~e~~iekl~erI~kl~~q~~d 25 (102)
.+++.+|++|.+|++.++.+.-.
T Consensus 5 s~I~~eIekLqe~lk~~e~keaE 27 (92)
T PF07820_consen 5 SKIREEIEKLQEQLKQAETKEAE 27 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999888876554
No 12
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=25.72 E-value=66 Score=20.68 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhcchhhhh
Q psy5982 4 KKKTALGRLKEQLLKLEVQETDK 26 (102)
Q Consensus 4 k~e~~iekl~erI~kl~~q~~dK 26 (102)
++|.+++.++.||...+..+..-
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~a 51 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAA 51 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888777766543
No 13
>KOG3257|consensus
Probab=25.36 E-value=9.6 Score=29.69 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=24.1
Q ss_pred HhhhhcccCcccCCCCcceeeeccccccCchHHHHhhhhhhccCCCC
Q psy5982 48 VAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAIKRRIDWDLSGLPN 94 (102)
Q Consensus 48 VAWCKk~~~~~~~~~~~~~~v~ie~~~~~~s~tl~~kf~Wa~~~~p~ 94 (102)
++|||+ |+ ++|++++|.-+.----+-.=.|-|+..+.++|-
T Consensus 49 iafcke-fn-----arT~~~k~~vplp~kiTv~pDrsftf~iktPpt 89 (168)
T KOG3257|consen 49 IAFCKE-FN-----ARTKKVKPGVPLPGKITVKPDRSFTFIIKTPPT 89 (168)
T ss_pred HHhchh-hh-----hhhccccCCCccceeEeecCCCeEEEEecCCCh
Confidence 569999 65 888887665432110111224667777777664
No 14
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=25.27 E-value=46 Score=25.94 Aligned_cols=17 Identities=53% Similarity=0.882 Sum_probs=12.8
Q ss_pred eeecc---cccccCchhhHh
Q psy5982 33 ALGTS---KLNYLDPRISVA 49 (102)
Q Consensus 33 ALGTS---KiNYiDPRItVA 49 (102)
.|+|. +.-|+||.+++.
T Consensus 76 gL~~a~~~~t~~~DPs~tl~ 95 (202)
T TIGR02743 76 GLGTTETPKTWYFDPSITLA 95 (202)
T ss_pred CCcccccCceEEeCCcEEec
Confidence 46665 455999999986
No 15
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=24.78 E-value=85 Score=20.98 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHhhcchhhhhhc
Q psy5982 3 DKKKTALGRLKEQLLKLEVQETDKEE 28 (102)
Q Consensus 3 Ek~e~~iekl~erI~kl~~q~~dKee 28 (102)
..+.++.+++++.|.+++.|+-++|.
T Consensus 5 ~~l~~~k~~Le~~L~~lE~qIy~~Et 30 (80)
T PF09340_consen 5 KELLQKKKKLEKDLAALEKQIYDKET 30 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667788888888888888774
No 16
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=24.23 E-value=1e+02 Score=23.43 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=20.4
Q ss_pred eeecc-ccccCchHHHHhhhhhhccCCCCcccc
Q psy5982 67 VIKVE-SFNSLPSQAIKRRIDWDLSGLPNTRIA 98 (102)
Q Consensus 67 ~v~ie-~~~~~~s~tl~~kf~Wa~~~~p~~~~~ 98 (102)
.|-|. .|+.+++...-+ .|+.+++|+|+|+
T Consensus 21 ~VEvn~TFY~~P~~~t~~--~W~~~~p~~F~F~ 51 (230)
T PF01904_consen 21 TVEVNSTFYRIPSPETVA--RWREQTPEGFRFS 51 (230)
T ss_dssp EEEE-HHCCSSS-HHHHH--HHHCTS-TT-EEE
T ss_pred eEEECcccCCCCCHHHHH--HHHhhCCCCeEEE
Confidence 56665 788888776555 4999999999996
No 17
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=22.83 E-value=72 Score=21.50 Aligned_cols=30 Identities=10% Similarity=0.281 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHhhcchhhhhhccce
Q psy5982 2 TDKKKTALGRLKEQLLKLEVQETDKEENKT 31 (102)
Q Consensus 2 ~Ek~e~~iekl~erI~kl~~q~~dKeeNK~ 31 (102)
|..++.+|.-+...|+.++-+..-|...+.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~~srs 56 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKKASRS 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccHH
Confidence 456788999999999999998888877664
No 18
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=22.01 E-value=70 Score=20.79 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHhhcchhhhhhccc
Q psy5982 2 TDKKKTALGRLKEQLLKLEVQETDKEENK 30 (102)
Q Consensus 2 ~Ek~e~~iekl~erI~kl~~q~~dKeeNK 30 (102)
++.++..|+-++..|..++..+..|...+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r 51 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASR 51 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999888887776544
No 19
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=21.87 E-value=50 Score=25.98 Aligned_cols=54 Identities=19% Similarity=0.378 Sum_probs=29.0
Q ss_pred eeecc---cccccCchhhHhhhhcccCcccCCCC-----cceeeeccccccCchHHH-------HhhhhhhccCCC
Q psy5982 33 ALGTS---KLNYLDPRISVAWYNLGFDFYNWSGK-----TKKVIKVESFNSLPSQAI-------KRRIDWDLSGLP 93 (102)
Q Consensus 33 ALGTS---KiNYiDPRItVAWCKk~~~~~~~~~~-----~~~~v~ie~~~~~~s~tl-------~~kf~Wa~~~~p 93 (102)
.|.|. +.-|+||.+++.- |-.+=.|. --.+=|++.+. |+++| .+-..||....+
T Consensus 74 gL~~a~~~rt~~~DPs~tl~~-----DI~d~~G~vi~~~G~~vNPLd~v~--~~~~LvfiDgdD~~Qv~wak~~~~ 142 (209)
T PRK13738 74 GIGRAEKYRSRLFDPSVRLAA-----DIRDNEGRVFARQGEVVNPLQYVP--FNQTLYFINGDDPAQVAWMKRQTP 142 (209)
T ss_pred CCcccccCceEEeCCcEEecC-----ccCCCCCCEEEcCCCeECcccccC--CCceEEEEeCCCHHHHHHHHHhhh
Confidence 35555 4559999999863 32233332 11233555322 45555 566677765444
No 20
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=20.77 E-value=1.2e+02 Score=25.68 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=27.0
Q ss_pred hhhhhccc-eeeeecccccccCchhhHhhhhcccCcccCCCCcc
Q psy5982 23 ETDKEENK-TIALGTSKLNYLDPRISVAWYNLGFDFYNWSGKTK 65 (102)
Q Consensus 23 ~~dKeeNK-~VALGTSKiNYiDPRItVAWCKk~~~~~~~~~~~~ 65 (102)
...+++-| -|.+|||..-+.+-+=.-.- ..+...||.|+-..
T Consensus 57 ~~~~~~kk~~~~fG~SRs~~F~~~~i~~~-~~dw~~yNFS~P~~ 99 (345)
T PF07611_consen 57 DKKKKDKKLLVVFGSSRSLPFSNEYIEKK-YPDWEVYNFSVPGG 99 (345)
T ss_pred ccCCcCceEEEEEecCcccccChHHHHhh-CCCCeEEEecCCCC
Confidence 33444444 68999999998876533344 34467788886543
Done!