Query psy5982
Match_columns 102
No_of_seqs 109 out of 193
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 23:34:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b9s_B DNA topoisomerase I-lik 100.0 3E-36 1E-40 197.2 1.9 62 20-97 1-62 (62)
2 1a31_A Protein (topoisomerase 100.0 4.2E-34 1.4E-38 245.2 2.4 81 2-97 510-591 (591)
3 3tbi_A RNA polymerase-associat 55.7 2.8 9.5E-05 29.9 0.3 37 38-88 55-91 (115)
4 1vpq_A Hypothetical protein TM 54.9 21 0.00071 27.2 5.1 56 31-98 13-82 (273)
5 2aw2_A B and T lymphocyte atte 51.7 1.9 6.5E-05 30.9 -1.1 29 26-54 17-50 (120)
6 2lw1_A ABC transporter ATP-bin 43.1 17 0.00058 23.2 2.6 26 2-27 24-49 (89)
7 1zme_C Proline utilization tra 42.6 19 0.00065 21.0 2.5 23 2-24 46-68 (70)
8 1vpy_A Protein (hypothetical p 33.4 27 0.00093 26.7 2.7 56 31-98 13-74 (289)
9 1xau_A B- and T-lymphocyte att 32.9 5.5 0.00019 28.5 -1.2 34 21-54 14-53 (122)
10 1zxa_A CGMP-dependent protein 20.9 40 0.0014 21.5 1.4 27 2-28 13-39 (67)
11 3qu6_A IRF3 protein; helix-tur 20.4 66 0.0022 22.3 2.5 43 43-97 53-95 (116)
No 1
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=100.00 E-value=3e-36 Score=197.19 Aligned_cols=62 Identities=34% Similarity=0.666 Sum_probs=48.6
Q ss_pred cchhhhhhccceeeeecccccccCchhhHhhhhcccCcccCCCCcceeeeccccccCchHHHHhhhhhhccCCCCccc
Q psy5982 20 EVQETDKEENKTIALGTSKLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAIKRRIDWDLSGLPNTRI 97 (102)
Q Consensus 20 ~~q~~dKeeNK~VALGTSKiNYiDPRItVAWCKk~~~~~~~~~~~~~~v~ie~~~~~~s~tl~~kf~Wa~~~~p~~~~ 97 (102)
+.++++||+||+|||||||||||||||||||||++ + |||| +||++|||+||.||+++ |+|+|
T Consensus 1 ~~~~~~k~~~K~vaLgTSKiNYlDPRItvaWcKr~-~-----------VPie---Kif~ktlr~KF~WA~~~-~~~~F 62 (62)
T 2b9s_B 1 ENIIRIKDDNKAVSLGTSKINYIDPRIICSWAKAQ-D-----------VPIN---KIFSATIQKKFPWAMNA-ENFDF 62 (62)
T ss_dssp ----------CEECCHHHHHHTSCHHHHHHHHHHT-T-----------CCGG---GTSCHHHHHHCTTTTTC-CSCCC
T ss_pred CchhhhhhhCeeEecccchhhccCchhhhhhhhhc-C-----------CCHH---HHhhHHHHHhhhhhhcC-CCccC
Confidence 45789999999999999999999999999999994 4 9988 57799999999999999 99987
No 2
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=99.98 E-value=4.2e-34 Score=245.15 Aligned_cols=81 Identities=48% Similarity=0.794 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHhhcchhhhhhccceeeeecccccccCchhhHhhhhcccCcccCCCCcceeeeccccccCchHHH
Q psy5982 2 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAI 81 (102)
Q Consensus 2 ~Ek~e~~iekl~erI~kl~~q~~dKeeNK~VALGTSKiNYiDPRItVAWCKk~~~~~~~~~~~~~~v~ie~~~~~~s~tl 81 (102)
+|+++++|+++++||.+|++|++|||+||+|||||||||||||||||||||+ ++ |||| +|||+||
T Consensus 510 ~e~~~k~~~~~~~~i~k~~~q~~~ke~nk~vaLgTSKiNYlDPRItvawckk-~~-----------VPie---Kif~ktl 574 (591)
T 1a31_A 510 VESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKK-WG-----------VPIE---KIYNKTQ 574 (591)
T ss_dssp ------------------------------------CTTTSCHHHHHHHHHH-TT-----------CCGG---GTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcCeeeecccchhhccCchhheeehhh-cC-----------CCHH---HhccHHH
Confidence 5889999999999999999999999999999999999999999999999999 55 9988 5779999
Q ss_pred HhhhhhhccC-CCCccc
Q psy5982 82 KRRIDWDLSG-LPNTRI 97 (102)
Q Consensus 82 ~~kf~Wa~~~-~p~~~~ 97 (102)
|+||.|||++ .|+|+|
T Consensus 575 r~KF~WA~~~~~~~~~F 591 (591)
T 1a31_A 575 REKFAWAIDMADEDYEF 591 (591)
T ss_dssp HHHTHHHHHHCCTTCCC
T ss_pred HHhhhhHHhCCCCCCcC
Confidence 9999999997 899987
No 3
>3tbi_A RNA polymerase-associated protein GP33; transcription accessory protein, transcription; 3.00A {Enterobacteria phage T4}
Probab=55.68 E-value=2.8 Score=29.86 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=32.4
Q ss_pred cccccCchhhHhhhhcccCcccCCCCcceeeeccccccCchHHHHhhhhhh
Q psy5982 38 KLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAIKRRIDWD 88 (102)
Q Consensus 38 KiNYiDPRItVAWCKk~~~~~~~~~~~~~~v~ie~~~~~~s~tl~~kf~Wa 88 (102)
-++||+- ++.||..+ .||++.|.++-+++|++|+.+.
T Consensus 55 gmsYLEA--~~~w~EEn------------sIe~~~~~K~Ip~~IiEKIk~E 91 (115)
T 3tbi_A 55 GMSYLEA--TTAFLEEN------------SIPETQFAKFIPSGIIEKIQSE 91 (115)
T ss_dssp CCCHHHH--HHHHHHHH------------TCCGGGHHHHSCHHHHHHHHHH
T ss_pred CchHHHH--HHHHHHHc------------CCCHHHhhHhcCHHHHHHHHHH
Confidence 3899985 78999995 3999999999999999999874
No 4
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Probab=54.94 E-value=21 Score=27.18 Aligned_cols=56 Identities=20% Similarity=0.353 Sum_probs=40.4
Q ss_pred eeeeecccccccC-----------chhhHhhhhc--ccCcccCCCCcceeeecc-ccccCchHHHHhhhhhhccCCCCcc
Q psy5982 31 TIALGTSKLNYLD-----------PRISVAWYNL--GFDFYNWSGKTKKVIKVE-SFNSLPSQAIKRRIDWDLSGLPNTR 96 (102)
Q Consensus 31 ~VALGTSKiNYiD-----------PRItVAWCKk--~~~~~~~~~~~~~~v~ie-~~~~~~s~tl~~kf~Wa~~~~p~~~ 96 (102)
-|-+|||-=.|=| ++=..++.-+ +|+ .|-|. .|+.+++...-+ .|+.+++++|+
T Consensus 13 ~i~iG~sgW~~~~W~G~fYP~~~~~~~~L~~Ya~~~~F~----------tVEiNsTFY~~p~~~t~~--~W~~~tP~~F~ 80 (273)
T 1vpq_A 13 MVYVGTSGFSFEDWKGVVYPEHLKPSQFLKYYWAVLGFR----------IVELNFTYYTQPSWRSFV--QMLRKTPPDFY 80 (273)
T ss_dssp EEEEEEBCSCCSTTBTTTBCTTCCGGGHHHHHHHTSCCC----------EEEECCCSSSSSCHHHHH--HHHTTSCTTCE
T ss_pred eEEEECCCCCCCCcCcccCCCCCCchHHHHHHhCCCCCC----------eEEECccccCCCCHHHHH--HHHHhCCCCeE
Confidence 4678998666644 3444566666 676 67775 788888765544 59999999999
Q ss_pred cc
Q psy5982 97 IA 98 (102)
Q Consensus 97 ~~ 98 (102)
|+
T Consensus 81 F~ 82 (273)
T 1vpq_A 81 FT 82 (273)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 5
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1
Probab=51.69 E-value=1.9 Score=30.93 Aligned_cols=29 Identities=24% Similarity=0.554 Sum_probs=22.0
Q ss_pred hhccceeeeecc-----cccccCchhhHhhhhcc
Q psy5982 26 KEENKTIALGTS-----KLNYLDPRISVAWYNLG 54 (102)
Q Consensus 26 KeeNK~VALGTS-----KiNYiDPRItVAWCKk~ 54 (102)
++..-+|..|-| ..-|-++|++|.|||-+
T Consensus 17 R~S~hsv~~G~~f~leCpv~yc~~rP~VtWcKln 50 (120)
T 2aw2_A 17 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLN 50 (120)
T ss_dssp TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEEC
T ss_pred ecccceEecCCeEEEEccEEeccCCCceEEEecC
Confidence 344556777776 45699999999999973
No 6
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=43.08 E-value=17 Score=23.23 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHhhcchhhhhh
Q psy5982 2 TDKKKTALGRLKEQLLKLEVQETDKE 27 (102)
Q Consensus 2 ~Ek~e~~iekl~erI~kl~~q~~dKe 27 (102)
.+.++.+|++++.+|..++.++.|-+
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~ 49 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADAS 49 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 35677888888888888888776643
No 7
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=42.59 E-value=19 Score=20.97 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHhhcchhh
Q psy5982 2 TDKKKTALGRLKEQLLKLEVQET 24 (102)
Q Consensus 2 ~Ek~e~~iekl~erI~kl~~q~~ 24 (102)
++.++.+++.++.+|..|+..+.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777888888777766544
No 8
>1vpy_A Protein (hypothetical protein EF0366); TIM alpha/beta barrel fold, structural genomics, joint cente structural genomics, JCSG; 2.52A {Enterococcus faecalis} SCOP: c.1.32.1 PDB: 1ztv_A
Probab=33.42 E-value=27 Score=26.69 Aligned_cols=56 Identities=18% Similarity=0.350 Sum_probs=37.0
Q ss_pred eeeeecccccccC-----chhhHhhhhcccCcccCCCCcceeeecc-ccccCchHHHHhhhhhhccCCCCcccc
Q psy5982 31 TIALGTSKLNYLD-----PRISVAWYNLGFDFYNWSGKTKKVIKVE-SFNSLPSQAIKRRIDWDLSGLPNTRIA 98 (102)
Q Consensus 31 ~VALGTSKiNYiD-----PRItVAWCKk~~~~~~~~~~~~~~v~ie-~~~~~~s~tl~~kf~Wa~~~~p~~~~~ 98 (102)
-|-+|||-=.|=| ++=..++.-++|+ .|-|. .|+.+++...-+ .|+.+++++|+|+
T Consensus 13 ~i~iG~sgWs~~~w~~~~~~~~L~~Ya~~F~----------tVEiNsTFY~~p~~~t~~--~W~~~tP~~F~F~ 74 (289)
T 1vpy_A 13 MIRLGLTSFSEHDYLTGKKRSTLYEYASHLP----------LVEMDTAYYGIPPKERVA--EWVKAVPENFRFV 74 (289)
T ss_dssp EEEEEESTTC----------CCHHHHHHHCS----------EEEECHHHHSCCCHHHHH--HHHHTSCTTCEEE
T ss_pred eEEEecCCCCChhhcCCChhhHHHHHHhhCC----------EEEECccccCCCCHHHHH--HHHHhCCCCcEEE
Confidence 4667777666633 4444556656676 67775 788888665544 4999999999997
No 9
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4
Probab=32.91 E-value=5.5 Score=28.53 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=22.2
Q ss_pred chhhhhhc-cceeeeecc-----cccccCchhhHhhhhcc
Q psy5982 21 VQETDKEE-NKTIALGTS-----KLNYLDPRISVAWYNLG 54 (102)
Q Consensus 21 ~q~~dKee-NK~VALGTS-----KiNYiDPRItVAWCKk~ 54 (102)
.|+..|.+ .-+|.-|.| ..-|-+||++|.|||-+
T Consensus 14 ~ql~ikR~S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~ 53 (122)
T 1xau_A 14 VQLNIKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHN 53 (122)
T ss_dssp CEECCCTTEEEEECTTSCEEEEEEEECSSSCCCEEEEEEC
T ss_pred eEEEEEeeccEEEecCCeEEEEeEecCCCCCCcEEEEecC
Confidence 34444443 445556666 23388899999999963
No 10
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.94 E-value=40 Score=21.54 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHhhcchhhhhhc
Q psy5982 2 TDKKKTALGRLKEQLLKLEVQETDKEE 28 (102)
Q Consensus 2 ~Ek~e~~iekl~erI~kl~~q~~dKee 28 (102)
+|.+.+.+..-+++|..|+..+.++++
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~ 39 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEE 39 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 566677788888888888777766654
No 11
>3qu6_A IRF3 protein; helix-turn-helix, gene regulation, DNA binding protein; 2.30A {Homo sapiens} SCOP: a.4.5.23 PDB: 2pi0_A 2o6g_E 1t2k_A
Probab=20.42 E-value=66 Score=22.34 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=29.9
Q ss_pred CchhhHhhhhcccCcccCCCCcceeeeccccccCchHHHHhhhhhhccCCCCccc
Q psy5982 43 DPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAIKRRIDWDLSGLPNTRI 97 (102)
Q Consensus 43 DPRItVAWCKk~~~~~~~~~~~~~~v~ie~~~~~~s~tl~~kf~Wa~~~~p~~~~ 97 (102)
|-.|+.|||.. +|+-.+- +++-. .++-+..|.=||+..|+|+.
T Consensus 53 D~~IFkaWA~~-------~Gk~~~g--~d~~d---p~~WKtnfRcALn~~~~f~~ 95 (116)
T 3qu6_A 53 DFGIFQAWAEA-------TGAYVPG--RDKPD---LPTWKRNFRSAMNRKEGLRL 95 (116)
T ss_dssp CCSHHHHHHHH-------TTSCCBT--TBCCC---HHHHHHHHHHHHHTCTTEEE
T ss_pred HHHHHHHHHHh-------cCcccCC--CCCCC---HHHHHHHHHHHHhcCCCEEE
Confidence 78899999996 3443322 11111 45789999999999988763
Done!