RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5982
         (102 letters)



>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
          dispensable insert domain {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 72

 Score = 46.3 bits (110), Expect = 7e-09
 Identities = 19/28 (67%), Positives = 24/28 (85%)

Query: 3  DKKKTALGRLKEQLLKLEVQETDKEENK 30
          + KK A+ RL+EQL+KLEVQ TD+EENK
Sbjct: 45 ESKKKAVQRLEEQLMKLEVQATDREENK 72


>d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA
           topoisomerase I, catalytic core {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 263

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 18/23 (78%), Positives = 20/23 (86%)

Query: 28  ENKTIALGTSKLNYLDPRISVAW 50
           +   IALGTSKLNYLDPRI+VAW
Sbjct: 208 KTFQIALGTSKLNYLDPRITVAW 230


>d1flca2 c.23.10.2 (A:1-150,A:307-427) Esterase domain of
           haemagglutinin-esterase-fusion glycoprotein HEF1
           {Influenza C virus [TaxId: 11552]}
          Length = 271

 Score = 26.1 bits (57), Expect = 0.83
 Identities = 9/32 (28%), Positives = 11/32 (34%)

Query: 51  YNLGFDFYNWSGKTKKVIKVESFNSLPSQAIK 82
              G   Y + G  K  +  E  N  P  AI 
Sbjct: 94  GPPGKVDYLYQGCGKHKVFYEGVNWSPHAAIN 125


>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase
          II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 91

 Score = 23.7 bits (51), Expect = 3.7
 Identities = 5/32 (15%), Positives = 17/32 (53%)

Query: 13 KEQLLKLEVQETDKEENKTIALGTSKLNYLDP 44
           +  ++++++    + +   A+G+ K +YL  
Sbjct: 59 IKSRIRVKIEGCISQVSSIHAIGSIKEDYLGA 90


>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 204

 Score = 23.7 bits (50), Expect = 5.4
 Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 18  KLEVQETDKEENKTIALGTSKLNYLDPRISVAWY--NLGFDFYNWSG 62
           ++ +   +     T+  GT +      +    ++  N  FDF+N++G
Sbjct: 146 RITIAINNTLTPTTLPPGTIQYLTDTSKYPKGYFVQNTYFDFFNYAG 192


>d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase
          II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 94

 Score = 22.6 bits (48), Expect = 9.6
 Identities = 7/32 (21%), Positives = 18/32 (56%)

Query: 13 KEQLLKLEVQETDKEENKTIALGTSKLNYLDP 44
          ++  ++L++  T  ++N   A+G+   +YL  
Sbjct: 62 QDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 93


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 376,980
Number of extensions: 15407
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 7
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)