BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5984
(512 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 270 bits (691), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/319 (49%), Positives = 194/319 (60%), Gaps = 42/319 (13%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAXXXXXXXXXNLKQDTRITVLGHVQRGGSP 86
RL+ RT G RLNIIIVAEGAIDR+GKPIT+ L DTR+TVLGHVQRGG+P
Sbjct: 246 RLSETRTRGSRLNIIIVAEGAIDRNGKPITSEGVKDLVVRRLGYDTRVTVLGHVQRGGTP 305
Query: 87 SAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADK 146
SAFDR+LG RMG EAVMAL+E TP T CV+SL GNQAVRLPLMECV+ TK V KAM +K
Sbjct: 306 SAFDRILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMDEK 365
Query: 147 QWDLAVQLRGRQVFPHPSFARNLETYKMLTRLKPP--KSAFDEMGRGLEGYTLAVMHIGA 204
++D A++LRGR SF N E YK+L ++PP KS YT+AVM++GA
Sbjct: 366 RFDEAMKLRGR------SFMNNWEVYKLLAHIRPPAPKSG---------SYTVAVMNVGA 410
Query: 205 PACGMNAAVRSFCN----DNYNTDFIYRLYSEEGKGLF--SARQNVLGHMQQGGSPSPFD 258
PA GMNAAVRS ++ + KG + V G QGGS
Sbjct: 411 PAAGMNAAVRSTVRIGLIQGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGSKLGSK 470
Query: 259 RNMGTKQ----AANT---------------AYQAGIQLVEARSDYKEFCIPMVVIPSTIS 299
R + K +AN AY G++L+E R + E CIP VVIP+T+S
Sbjct: 471 RTLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVS 530
Query: 300 NNVPGTEFSLGCDTALNEI 318
NNVPG++FS+G DTALN I
Sbjct: 531 NNVPGSDFSVGADTALNTI 549
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 115/230 (50%), Gaps = 31/230 (13%)
Query: 238 FSARQNVLGHMQQGGSPSPFDRNMGTK--------------------------QAANTAY 271
+ R VLGH+Q+GG+PS FDR +G++ QA
Sbjct: 289 YDTRVTVLGHVQRGGTPSAFDRILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPL 348
Query: 272 QAGIQL---VEARSDYKEFCIPMVVIPSTISNNVPGTEFSLGCDTALNEITEEGYTLAVM 328
+Q+ V D K F M + + NN + L YT+AVM
Sbjct: 349 MECVQVTKDVTKAMDEKRFDEAMKLRGRSFMNNWE--VYKLLAHIRPPAPKSGSYTVAVM 406
Query: 329 HIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQGGAM 388
++GAPA GMNAAVRS VR + +G+ V+ +HDG EG G ++ WS V GW GQGG+
Sbjct: 407 NVGAPAAGMNAAVRSTVRIGLIQGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGSK 466
Query: 389 LGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFEDEQGHMQQGGSPSPFD 438
LG+KRTLP+K QI+A + + IQ L+IIGGFE G ++ FD
Sbjct: 467 LGSKRTLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFD 516
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 38/51 (74%), Positives = 44/51 (86%)
Query: 217 CNDNYNTDFIYRLYSEEGKGLFSARQNVLGHMQQGGSPSPFDRNMGTKQAA 267
CN+NY TDFI+ LYSEEGKG+F +R+NVLGHMQQGGSP+PFDRN TK A
Sbjct: 631 CNENYTTDFIFNLYSEEGKGIFDSRKNVLGHMQQGGSPTPFDRNFATKMGA 681
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 426 GHMQQGGSPSPFDRNMGTKQAANTVEWMIDQLKKCTKPDGSVFTDSPETAVLMGVIRRQY 485
GHMQQGGSP+PFDRN TK A + WM ++K+ + +G +F ++P++ ++G+ +R
Sbjct: 660 GHMQQGGSPTPFDRNFATKMGAKAMNWMAGKIKESYR-NGRIFANTPDSGCVLGMRKRAL 718
Query: 486 CFTPLQTLKKETNFECK 502
F P+ L+ +T+FE +
Sbjct: 719 VFQPVTELQNQTDFEHR 735
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 322 GYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQ--WSDVT 379
G +AV+ G A GMNAAVR+ VR I+ G V +H+G +GLV G I + W V+
Sbjct: 15 GKAIAVLTSGGDAQGMNAAVRAVVRVGIFTGARVFFVHEGYQGLVDGGDHIREATWESVS 74
Query: 380 GWVGQGGAMLGTKRTLPEKKLP---QIAAKLKELKIQALLIIGG 420
+ GG ++G+ R ++ + A L + I L +IGG
Sbjct: 75 MMLQLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGG 118
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 71 DTRITVLGHVQRGGSPSAFDRVLGCRMGAEAV--MA-----------LMEATPGTEPCVM 117
D+R VLGH+Q+GGSP+ FDR +MGA+A+ MA + TP + CV+
Sbjct: 653 DSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWMAGKIKESYRNGRIFANTPDS-GCVL 711
Query: 118 SLDGNQAVRLPLMECVEKTKAVAKAMADKQW 148
+ V P+ E +T + ++ W
Sbjct: 712 GMRKRALVFQPVTELQNQTDFEHRIPKEQWW 742
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 121/331 (36%), Gaps = 88/331 (26%)
Query: 194 GYTLAVMHIGAPACGMNAAVRSFCNDNYNTDFIYRLYSEEGKGLF--------SARQNVL 245
G +AV+ G A GMNAAVR+ T E +GL + ++V
Sbjct: 15 GKAIAVLTSGGDAQGMNAAVRAVVRVGIFTGARVFFVHEGYQGLVDGGDHIREATWESVS 74
Query: 246 GHMQQGGSP------SPFDRNMGTKQAANTAYQAGI----------QLVEA---RSDYKE 286
+Q GG+ F G +AA+ + GI L A RS++ +
Sbjct: 75 MMLQLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSD 134
Query: 287 FC-------------------IPMVVIPSTISNNVPGTEFSLGCDTALNEITEEGYTLAV 327
+ +V + +I N+ GT+ ++G D+AL+ ITE
Sbjct: 135 LLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITE------- 187
Query: 328 MHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDV------TGW 381
+ A + R+FV V+G H G LV W + W
Sbjct: 188 -IVDAITTTAQSHQRTFVLE-------VMGRHCGYLALVTSLSCGADWVFIPECPPDDNW 239
Query: 382 VGQGGAMLGTKRT--------------LPEKKLPQIAAKLKELKIQALLIIGGFEDE--- 424
L RT + P + +K+L ++ L G++
Sbjct: 240 EDHLCRRLSETRTRGSRLNIIIVAEGAIDRNGKPITSEGVKDLVVRRL----GYDTRVTV 295
Query: 425 QGHMQQGGSPSPFDRNMGTKQAANTVEWMID 455
GH+Q+GG+PS FDR +G++ V +++
Sbjct: 296 LGHVQRGGTPSAFDRILGSRMGVEAVMALLE 326
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 766
Score = 179 bits (453), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 150/472 (31%), Positives = 226/472 (47%), Gaps = 68/472 (14%)
Query: 31 ERTAGQRLNIIIVAEGAIDRDGKPITAXXXXXXXXXNLKQDTRITVLGHVQRGGSPSAFD 90
R+ G+R I++VAEGAI D PI+ L DTRIT LGHVQRGG+ A+D
Sbjct: 240 HRSRGKRTTIVVVAEGAIAADLTPISPSDVHKVLVDRLGLDTRITTLGHVQRGGTAVAYD 299
Query: 91 RVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADKQWDL 150
R+L G EAV A++E+TP T +++++ N+ VR PLME V+ TKAVA+A+ K +
Sbjct: 300 RILATLQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQAKDFKR 359
Query: 151 AVQLRGRQVFPHPSFARNLETYKMLTRL--KPPKSAFDEMGRGLEGYTLAVMHIGAPACG 208
A+ LR + H L + + PK D+ + +A++++GAPA G
Sbjct: 360 AMSLRDTEFIEH------LNNFMAINSADHNEPKLPKDKRLK------IAIVNVGAPAGG 407
Query: 209 MNAAVRS---FCNDNYNTDF-IYRLYS-----EEGKGLFSARQNVLGHMQQGGSP----- 254
+N+AV S +C + + IY +S E + L +++LG +GGS
Sbjct: 408 INSAVYSMATYCMSQGHRPYAIYNGWSGLARHESVRSL--NWKDMLGWQSRGGSEIGTNR 465
Query: 255 -SPFDRNMGTKQ--------------AANTAYQAGIQLVEARSDYKEFCIPMVVIPSTIS 299
+P + ++G A+++ QL AR Y F IPMV+IP+T+S
Sbjct: 466 VTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLS 525
Query: 300 NNVPGTEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNC------IYRGD 353
NNVPGTE+SLG DTALN + E Y V + G R+FV +C
Sbjct: 526 NNVPGTEYSLGSDTALNALME--YCDVVKQSASSTRG-----RAFVVDCQGGNSGYLATY 578
Query: 354 TVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQ------GGAMLGTKRTLPEKKLPQIAAKL 407
+ + V + + + Q S+ ++ Q G G K L + +
Sbjct: 579 ASLAVGAQVSYVPEEGISLEQLSEDIEYLAQSFEKAEGRGRFG-KLILKSTNASKALSAT 637
Query: 408 KELKIQALLIIGGFEDE---QGHMQQGGSPSPFDRNMGTKQAANTVEWMIDQ 456
K ++ G F+ + GH+QQGG PSP DR T+ A V ++ D
Sbjct: 638 KLAEVITAEADGRFDAKPAYPGHVQQGGLPSPIDRTRATRMAIKAVGFIKDN 689
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 14/191 (7%)
Query: 325 LAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGN---VQIMQWSDVTGW 381
+AVM G A GMN+ VR+ VR+ I++G + +G EGLV G ++ W DV GW
Sbjct: 6 IAVMTSGGDAPGMNSNVRAIVRSAIFKGCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGW 65
Query: 382 VGQGGAMLGTKRTLPEKKLPQI---AAKLKELKIQALLIIGGFEDEQG-HMQQGGSPSPF 437
+GG +GT R + KK A L E + AL++ GG G + + PS
Sbjct: 66 SAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLI 125
Query: 438 DRNMGTKQAANTVEWMIDQLKKCTKPDGSVFTDSPETAVLMGVIRRQYCFTPLQTLKKET 497
+ + T + +N + L C GS+ D T +G ++ L + K
Sbjct: 126 EELLKTNRISNEQYERMKHLNICGTV-GSIDNDMSTTDATIG------AYSALDRICKAI 178
Query: 498 NFECKSCNGQT 508
++ + N +
Sbjct: 179 DYVEATANSHS 189
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 153/520 (29%), Positives = 240/520 (46%), Gaps = 86/520 (16%)
Query: 31 ERTAGQRLNIIIVAEGAIDRDGKPITAXXXXXXXXXNLKQDTRITVLGHVQRGGSPSAFD 90
R G+R I+IVAEGAI D PI+ L DTR+T LGHVQRGG+ AFD
Sbjct: 418 HRARGKRKTIVIVAEGAISNDLSPISCDQVKDVLVNRLGLDTRVTTLGHVQRGGTAVAFD 477
Query: 91 RVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADKQWDL 150
R+ G EAV A++E T ++++ +Q R+PL++ VE T+ VAK++ + +
Sbjct: 478 RIYATLQGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSIESRNFKK 537
Query: 151 AVQLRGRQVFPHPSFARNLETYKMLTRLKPPKSAFDEMGRGLEGYTLAVMHIGAPACGMN 210
A+ LR + H +N + + PP ++ + +A++++GAPA GMN
Sbjct: 538 AISLRDSEFVEH---MKNFISTNSADHV-PPSLPLEKRKK------IAIINVGAPAGGMN 587
Query: 211 AAVRS---FCNDNYNTDF-IYRLYSEEGKGLFSARQ----NVLGHMQQGGSPS------P 256
+AV S +C + + I+ +S + S R ++ G GGS P
Sbjct: 588 SAVYSMATYCMSRGHVPYAIHNGFSGLARHE-SVRSINWLDIEGWGSLGGSEIGTNRTLP 646
Query: 257 FDRNMGTKQAANTAY-----------QAGI---QLVEARSDYKEFCIPMVVIPSTISNNV 302
D ++G Y +A I QL AR +Y IP+V+IP+TISNNV
Sbjct: 647 NDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNV 706
Query: 303 PGTEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGV 362
PGTE+SLG DT LN E C + + RN ++ V+ + G
Sbjct: 707 PGTEYSLGSDTCLNSFME-------------YCDVIKQSAAATRNRVF----VVEVQGGN 749
Query: 363 EGLVAGNVQIMQWSDVTGWVGQGGAMLG--------TKRTLPEKKLPQIAAKL------- 407
G +A + Q+ + ++ +V + G L K + + + +L
Sbjct: 750 SGYIATHAQLACGAQIS-YVPEEGISLAQLEMDINSLKESFANDQGKTKSGRLILKSENA 808
Query: 408 -KELKIQALLII------GGFEDEQ---GHMQQGGSPSPFDRNMGTKQAANTVEWMIDQL 457
K L + + I G F+ + GH+QQGG PSP DR ++ A V ++
Sbjct: 809 SKVLTTEVISTIIDDEASGRFDSKTAIPGHVQQGGIPSPMDRVRASRFAIRAVSFIERHS 868
Query: 458 KKCTKPDGSV-FTDSPE---TAVLMGVIRRQYCFTPLQTL 493
+C S+ F + E TAV++G+ + Q FTP++ L
Sbjct: 869 DRCQTFKNSISFRQTDEITSTAVVLGIHKSQLRFTPIRQL 908
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 12/106 (11%)
Query: 324 TLAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGN---VQIMQWSDVTG 380
T+ VM G + GMN VR+ VR IY+G V IH+G EGLV G ++ QW DV G
Sbjct: 183 TIGVMTSGGDSPGMNPFVRAVVRAGIYKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRG 242
Query: 381 WVGQGGAMLGTKRTLPEKKLPQIAAKLKELK------IQALLIIGG 420
W+ +GG +GT R K+ + + +LK K I AL++ GG
Sbjct: 243 WLVEGGTNIGTARC---KEFRERSGRLKACKNMIDMGIDALIVCGG 285
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 158/544 (29%), Positives = 232/544 (42%), Gaps = 117/544 (21%)
Query: 31 ERTAGQRLNIIIVAEGAIDRDGKPITAXXXXXXXXXNLKQDTRITVLGHVQRGGSPSAFD 90
R G+R +IVAEGAID PIT+ + DTRIT LGHVQRGG+P AFD
Sbjct: 446 HREKGRRKTTVIVAEGAIDDQLNPITSEEVKDVLV-EIGLDTRITRLGHVQRGGAPCAFD 504
Query: 91 RVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADKQWDL 150
R L G +AV A++E+TP V+S+ N+ VR PL+E V +TK V+ A+ K +D
Sbjct: 505 RFLATVQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIEAKDFDK 564
Query: 151 AVQLRGRQVFPHPSFARNLETYKMLTRLKPPKSAFDEMGRGLEGYTLAVMHIGAPACGMN 210
A+QLR ++ FA + E + +++ E R +A++H+GAP +N
Sbjct: 565 ALQLRDQE------FATSYENFLSVSKYDDGSYLVPESSR----LNIAIIHVGAPTSALN 614
Query: 211 AAVRSFCNDNYNTDFIYRLYSEEGKGLFSARQNVLGHMQQ-----------------GGS 253
A R ++ +G +F+ R G ++ GGS
Sbjct: 615 PATRVATLNSL----------AKGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGS 664
Query: 254 PSPFDRNMGTKQAANTAY-------------------QAGIQLVEARSDYKEFCIPMVVI 294
+R++ + AY A +L AR+ Y F IPM +
Sbjct: 665 EIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCL 724
Query: 295 PSTISNNVPGTEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDT 354
P+T+SNNVPGTE+SLG DT LN ++ GY AV + + R+FV
Sbjct: 725 PATVSNNVPGTEYSLGSDTCLNTLS--GYCDAVKQSASA-----SRRRTFVVE------- 770
Query: 355 VIGIHDG----VEGLVAG-----------NVQIMQWSDVTGWVGQGGAMLGTKRTLPEKK 399
V G + G GL+ G N+Q +Q D+ G R+
Sbjct: 771 VQGGYSGYLASYAGLITGALAVYTPENPINLQTVQ-EDIELLTRTYEEDDGKNRSGKIFI 829
Query: 400 LPQIAAKLKELKIQALLI----IGGFEDEQ---GHMQQGGSPSPFDR------------- 439
+ A+K+ + A +I G FE GH+QQG SPS DR
Sbjct: 830 HNEKASKVYTTDLIAAIIGEAGKGRFESRTAVPGHVQQGKSPSSIDRVNACRLAIKCCNF 889
Query: 440 ----NMGTKQAANT------VEWMIDQLKKCTKPDGSVFTDSPETAVLMGVIRRQYCFTP 489
N K AN + + D K + G T+V++G+ + FTP
Sbjct: 890 IEDANFQVKHNANLSADERHLRFFYDDGVKTSAVSGKSSVIDDNTSVVIGIQGSEVTFTP 949
Query: 490 LQTL 493
++ L
Sbjct: 950 VKQL 953
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 19/141 (13%)
Query: 272 QAGIQLVEARSDYKEF--------CIPMVVIPSTISNNVPGTEFSL-------GCDTALN 316
+ G +++ ++ D EF I PS S + +F L ++ +
Sbjct: 143 EIGAEIIPSKIDLVEFSTRDPMGDVISFSSYPSLNSKKITSPDFFLHPKKEVRSEESIVE 202
Query: 317 EI-TEEGYT-LAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGN--VQI 372
++ +EEG +A++ G A GMNAAVR+ R I+ G V ++G GLV G ++
Sbjct: 203 QVKSEEGKKKIAIITSGGDAPGMNAAVRAVTRAGIFYGCKVYACYEGYTGLVKGGDMLKE 262
Query: 373 MQWSDVTGWVGQGGAMLGTKR 393
+QW DV G + GG ++GT R
Sbjct: 263 LQWQDVRGLLSIGGTIIGTAR 283
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 34/201 (16%)
Query: 289 IPMVVIPSTISNNVPGTEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNC 348
+ +V + +I N++ GT+ ++G ++L I E V +I A A + R+FV
Sbjct: 351 LTIVGLVGSIDNDMCGTDSTIGAYSSLERIIE-----LVDYIDATAASHS---RAFVVE- 401
Query: 349 IYRGDTVIGIHDGVEGLVAGNVQIMQWSDV-------TGWVGQGGAMLGTKRTLPEKKLP 401
V+G H G GL++G + + + W + R +K
Sbjct: 402 ------VMGRHCGWLGLMSGIATGADYIFIPERPPSESNWKDDLKKVCLRHREKGRRKTT 455
Query: 402 QIAAK---------LKELKIQALLIIGGFEDE---QGHMQQGGSPSPFDRNMGTKQAANT 449
I A+ + +++ +L+ G + GH+Q+GG+P FDR + T Q +
Sbjct: 456 VIVAEGAIDDQLNPITSEEVKDVLVEIGLDTRITRLGHVQRGGAPCAFDRFLATVQGVDA 515
Query: 450 VEWMIDQLKKCTKPDGSVFTD 470
V +++ P S+ +
Sbjct: 516 VRAVLESTPAIPSPVISILEN 536
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 165/315 (52%), Gaps = 37/315 (11%)
Query: 31 ERTAGQRLNIIIVAEGAIDRDGKPITAXXXXXXXXXNLKQDTRITVLGHVQRGGSPSAFD 90
R+ G+R N IIVAEGA+D P+TA L DT++T+LGHVQRGG+ A D
Sbjct: 241 HRSKGRRNNTIIVAEGALDDQLNPVTANDVKDALI-ELGLDTKVTILGHVQRGGTAVAHD 299
Query: 91 RVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADKQWDL 150
R L G +AV A++E TP T ++ + N+ +R+PL+E V+ TK+VA A+ +K +D
Sbjct: 300 RWLATLQGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIENKDFDK 359
Query: 151 AVQLRGRQVFPHPSFARNLETYKMLTRLKPPKSAFDEMGRGLEGYTLAVMHIGAPACGMN 210
A+ LR + F E + + T +K S + L + ++H+GAP+ +N
Sbjct: 360 AISLRDTE------FIELYENF-LSTTVKDDGSELLPVSDRL---NIGIVHVGAPSAALN 409
Query: 211 AAVRS---FCNDNYNTDF-IYRLYS---EEGKGLFSARQNVLGHMQQGGSPSPFDRNMGT 263
AA R+ +C + + + I +S + G+ + +V GGS +R++ +
Sbjct: 410 AATRAATLYCLSHGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGSEIGTNRSVAS 469
Query: 264 KQAANTAY-------------------QAGIQLVEARSDYKEFCIPMVVIPSTISNNVPG 304
+ AY ++ QL + R+ + F IPM +IP+T+SNNVPG
Sbjct: 470 EDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPG 529
Query: 305 TEFSLGCDTALNEIT 319
TE+SLG DT LN +
Sbjct: 530 TEYSLGVDTCLNALV 544
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 5/101 (4%)
Query: 325 LAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGN--VQIMQWSDVTGWV 382
+AVM G + GMNAAVR+ VR I+ G V +++G EGL+ G ++ M W DV GW+
Sbjct: 8 IAVMTSGGDSPGMNAAVRAVVRTGIHFGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWL 67
Query: 383 GQGGAMLGTKRTLPEKKLP---QIAAKLKELKIQALLIIGG 420
+GG ++GT R++ +K Q A L I AL++ GG
Sbjct: 68 SEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGG 108
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 33/217 (15%)
Query: 238 FSARQNVLGHMQQGGSPSPFDRNMGTKQAANTAYQAGIQLV-EARS------DYKEFCIP 290
+ +LGH+Q+GG+ DR + T Q + A +A ++ E S + K +P
Sbjct: 279 LDTKVTILGHVQRGGTAVAHDRWLATLQGVD-AVKAVLEFTPETPSPLIGILENKIIRMP 337
Query: 291 MV---VIPSTISNNVPGTEFSLGC---DTALNEITE------------------EGYTLA 326
+V + +++ + +F DT E+ E + +
Sbjct: 338 LVESVKLTKSVATAIENKDFDKAISLRDTEFIELYENFLSTTVKDDGSELLPVSDRLNIG 397
Query: 327 VMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLV-AGNVQIMQWSDVTGWVGQG 385
++H+GAP+ +NAA R+ C+ G I +G GL+ G V+ + W DV W G
Sbjct: 398 IVHVGAPSAALNAATRAATLYCLSHGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLG 457
Query: 386 GAMLGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFE 422
G+ +GT R++ + L IA ++ K+ L+I+GGFE
Sbjct: 458 GSEIGTNRSVASEDLGTIAYYFQKNKLDGLIILGGFE 494
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 221 YNTDFIYRLYSEEGKGLFSARQNVLGHMQQGGSPSPFDRNMGTKQA 266
Y+T + + SE KG F R + GH+QQGG PS DR ++ A
Sbjct: 633 YSTQLLADIISEASKGKFGVRTAIPGHVQQGGVPSSKDRVTASRFA 678
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 72 TRITVLGHVQRGGSPSAFDRVLGCRMGAEAVMALM------EATPGTEPCVMSLDGN-QA 124
R + GHVQ+GG PS+ DRV R + + + EA+P T+ V+ +
Sbjct: 652 VRTAIPGHVQQGGVPSSKDRVTASRFAVKCIKFIEQWNKKNEASPNTDAKVLRFKFDTHG 711
Query: 125 VRLPLMECVEKTKAV 139
++P +E + + AV
Sbjct: 712 EKVPTVEHEDDSAAV 726
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 78/152 (51%), Gaps = 19/152 (12%)
Query: 325 LAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQ 384
+ V+ G + GMNAA+RS VR IY G V G++ G GL+AGN++ ++ DV + +
Sbjct: 4 IGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHR 63
Query: 385 GGAMLGTKRTLPEKKLPQIAAK----LKELKIQALLIIGGFEDEQGH---MQQG----GS 433
GG +L T R PE K + K LK+ IQ L++IGG QG + G G
Sbjct: 64 GGTILYTARC-PEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFPCVGV 122
Query: 434 PSPFDRN-------MGTKQAANTVEWMIDQLK 458
P D + +G A NTV ID+++
Sbjct: 123 PGTIDNDIPGTDFTIGFDTALNTVIDAIDKIR 154
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 67/129 (51%), Gaps = 16/129 (12%)
Query: 27 RLACERTAGQRLNIIIVAEG---AIDRDGKPITAXXXXXXXXXNLKQDTRITVLGHVQRG 83
RL G++ +IIIVAEG +D G+ I +TR+TVLGHVQRG
Sbjct: 204 RLKRGHERGKKHSIIIVAEGVGSGVDF-GRQIQEATGF---------ETRVTVLGHVQRG 253
Query: 84 GSPSAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAM 143
GSP+AFDRVL R+GA AV L+E G CV + NQ V + E + + + M
Sbjct: 254 GSPTAFDRVLASRLGARAVELLLEGKGGR--CV-GIQNNQLVDHDIAEALANKHTIDQRM 310
Query: 144 ADKQWDLAV 152
+L++
Sbjct: 311 YALSKELSI 319
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 126/307 (41%), Gaps = 81/307 (26%)
Query: 197 LAVMHIGAPACGMNAAVRSFCNDN-YNTDFIYRLYSEEGKGLFSAR------QNVLGHMQ 249
+ V+ G + GMNAA+RS Y+ +Y +Y GL + +V +
Sbjct: 4 IGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGY-AGLIAGNIKKLEVGDVGDIIH 62
Query: 250 QGGSP------SPFDRNMGTKQAANTAYQAGIQ---LVEARSDYK------EFCIPMVVI 294
+GG+ F G K+ + GIQ ++ Y+ E P V +
Sbjct: 63 RGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFPCVGV 122
Query: 295 PSTISNNVPGTEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDT 354
P TI N++PGT+F++G DTALN + + A+ I A R++V
Sbjct: 123 PGTIDNDIPGTDFTIGFDTALNTVID-----AIDKIRDTATSHE---RTYVIE------- 167
Query: 355 VIGIHDGVEGLVAGNVQIMQWSDVTGWVGQGGAMLGTKRTLPEK--KLPQIAAKLK---- 408
V+G H G I WS G G +L +PE + + A+LK
Sbjct: 168 VMGRHAG---------DIALWS---GLAGGAETIL-----IPEADYDMNDVIARLKRGHE 210
Query: 409 ELKIQALLIIG-----------------GFEDE---QGHMQQGGSPSPFDRNMGTKQAAN 448
K +++I+ GFE GH+Q+GGSP+ FDR + ++ A
Sbjct: 211 RGKKHSIIIVAEGVGSGVDFGRQIQEATGFETRVTVLGHVQRGGSPTAFDRVLASRLGAR 270
Query: 449 TVEWMID 455
VE +++
Sbjct: 271 AVELLLE 277
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 19/152 (12%)
Query: 325 LAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQ 384
+ V+ G + GMNAA+RS VR IY G V G++ G GL+AGN++ ++ DV + +
Sbjct: 4 IGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHR 63
Query: 385 GGAMLGTKRTLPEKKLPQIAAK----LKELKIQALLIIGGFEDEQGH---MQQG----GS 433
GG +L T R PE K + K LK+ I+ L++IGG QG + G G
Sbjct: 64 GGTILYTARC-PEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEHGFPCVGV 122
Query: 434 PSPFDRN-------MGTKQAANTVEWMIDQLK 458
P D + +G A NTV ID+++
Sbjct: 123 PGTIDNDIPGTDFTIGFDTALNTVIDAIDKIR 154
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 67/129 (51%), Gaps = 16/129 (12%)
Query: 27 RLACERTAGQRLNIIIVAEG---AIDRDGKPITAXXXXXXXXXNLKQDTRITVLGHVQRG 83
RL G++ +IIIVAEG +D G+ I +TR+TVLGHVQRG
Sbjct: 204 RLKRGHERGKKHSIIIVAEGVGSGVDF-GRQIQEATGF---------ETRVTVLGHVQRG 253
Query: 84 GSPSAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAM 143
GSP+AFDRVL R+GA AV L+E G CV + NQ V + E + + + M
Sbjct: 254 GSPTAFDRVLASRLGARAVELLLEGKGGR--CV-GIQNNQLVDHDIAEALANKHTIDQRM 310
Query: 144 ADKQWDLAV 152
+L++
Sbjct: 311 YALSKELSI 319
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 128/307 (41%), Gaps = 81/307 (26%)
Query: 197 LAVMHIGAPACGMNAAVRSFCNDN-YNTDFIYRLYSEEGKGLFSAR------QNVLGHMQ 249
+ V+ G + GMNAA+RS Y+ +Y +Y GL + +V +
Sbjct: 4 IGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGY-AGLIAGNIKKLEVGDVGDIIH 62
Query: 250 QGGSP------SPFDRNMGTKQAANTAYQAGIQ---LVEARSDYK------EFCIPMVVI 294
+GG+ F G K+ + GI+ ++ Y+ E P V +
Sbjct: 63 RGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEHGFPCVGV 122
Query: 295 PSTISNNVPGTEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDT 354
P TI N++PGT+F++G DTALN + + A+ I A R++V
Sbjct: 123 PGTIDNDIPGTDFTIGFDTALNTVID-----AIDKIRDTATSHE---RTWVIE------- 167
Query: 355 VIGIHDGVEGLVAGNVQIMQWSDVTGWVGQGGAMLGTKRTLPEK--KLPQIAAKLK---- 408
V+G H AG++ + +G G +L +PE + + A+LK
Sbjct: 168 VMGRH-------AGDIALY-----SGLAGGAETIL-----IPEADYDMNDVIARLKRGHE 210
Query: 409 ELKIQALLIIG-----------------GFEDE---QGHMQQGGSPSPFDRNMGTKQAAN 448
K +++I+ GFE GH+Q+GGSP+ FDR + ++ A
Sbjct: 211 RGKKHSIIIVAEGVGSGVDFGRQIQEATGFETRVTVLGHVQRGGSPTAFDRVLASRLGAR 270
Query: 449 TVEWMID 455
VE +++
Sbjct: 271 AVELLLE 277
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 19/152 (12%)
Query: 325 LAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQ 384
+ V+ G + GMNAA+RS VR IY G V G++ G GL+AGN++ ++ DV + +
Sbjct: 4 IGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHR 63
Query: 385 GGAMLGTKRTLPEKKLPQIAAK----LKELKIQALLIIGGFEDEQGH---MQQG----GS 433
GG +L T R PE K + K LK+ I+ L++IGG QG + G G
Sbjct: 64 GGTILYTARC-PEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEHGFPCVGV 122
Query: 434 PSPFDRN-------MGTKQAANTVEWMIDQLK 458
P D + +G A NTV ID+++
Sbjct: 123 PGTIDNDIPGTDFTIGFDTALNTVIDAIDKIR 154
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 67/129 (51%), Gaps = 16/129 (12%)
Query: 27 RLACERTAGQRLNIIIVAEG---AIDRDGKPITAXXXXXXXXXNLKQDTRITVLGHVQRG 83
RL G++ +IIIVAEG +D G+ I +TR+TVLGHVQRG
Sbjct: 204 RLKRGHERGKKHSIIIVAEGVGSGVDF-GRQIQEATGF---------ETRVTVLGHVQRG 253
Query: 84 GSPSAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAM 143
GSP+AFDRVL R+GA AV L+E G CV + NQ V + E + + + M
Sbjct: 254 GSPTAFDRVLASRLGARAVELLLEGKGGR--CV-GIQNNQLVDHDIAEALANKHTIDQRM 310
Query: 144 ADKQWDLAV 152
+L++
Sbjct: 311 YALSKELSI 319
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 126/307 (41%), Gaps = 81/307 (26%)
Query: 197 LAVMHIGAPACGMNAAVRSFCNDN-YNTDFIYRLYSEEGKGLFSAR------QNVLGHMQ 249
+ V+ G + GMNAA+RS Y+ +Y +Y GL + +V +
Sbjct: 4 IGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGY-AGLIAGNIKKLEVGDVGDIIH 62
Query: 250 QGGSP------SPFDRNMGTKQAANTAYQAGIQ---LVEARSDYK------EFCIPMVVI 294
+GG+ F G K+ + GI+ ++ Y+ E P V +
Sbjct: 63 RGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEHGFPCVGV 122
Query: 295 PSTISNNVPGTEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDT 354
P TI N++PGT+F++G DTALN + + A+ I A R++V
Sbjct: 123 PGTIDNDIPGTDFTIGFDTALNTVID-----AIDKIRDTATSHE---RTYVIE------- 167
Query: 355 VIGIHDGVEGLVAGNVQIMQWSDVTGWVGQGGAMLGTKRTLPEK--KLPQIAAKLK---- 408
V+G H G I WS G G +L +PE + + A+LK
Sbjct: 168 VMGRHAG---------DIALWS---GLAGGAETIL-----IPEADYDMNDVIARLKRGHE 210
Query: 409 ELKIQALLIIG-----------------GFEDE---QGHMQQGGSPSPFDRNMGTKQAAN 448
K +++I+ GFE GH+Q+GGSP+ FDR + ++ A
Sbjct: 211 RGKKHSIIIVAEGVGSGVDFGRQIQEATGFETRVTVLGHVQRGGSPTAFDRVLASRLGAR 270
Query: 449 TVEWMID 455
VE +++
Sbjct: 271 AVELLLE 277
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 68/128 (53%), Gaps = 14/128 (10%)
Query: 27 RLACERTAGQRLNIIIVAEGAID--RDGKPITAXXXXXXXXXNLKQDTRITVLGHVQRGG 84
RL G++ +IIIVAEG GK I NL +TR++VLGH+QRGG
Sbjct: 204 RLKRGHERGKKHSIIIVAEGVGSGVEFGKRIE-------EETNL--ETRVSVLGHIQRGG 254
Query: 85 SPSAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMA 144
SPSA DRVL R+GA AV L+E G CV + N+ V ++E +E V + M
Sbjct: 255 SPSAADRVLASRLGAYAVELLLEGKGGR--CV-GIQNNKLVDHDIIEILETKHTVEQNMY 311
Query: 145 DKQWDLAV 152
+L++
Sbjct: 312 QLSKELSI 319
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 19/152 (12%)
Query: 325 LAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQ 384
+ V+ G + GMNAAVR+ VR IY V GI++G GL++G ++ ++ V + +
Sbjct: 4 IGVLTSGGDSPGMNAAVRAVVRKAIYHDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHR 63
Query: 385 GGAMLGTKRTLPEKKL----PQIAAKLKELKIQALLIIGG---FEDEQGHMQQG----GS 433
GG L T R PE K + A LK+L I+ L++IGG + + + G G
Sbjct: 64 GGTKLYTARC-PEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEHGFPCVGV 122
Query: 434 PSPFDRN-------MGTKQAANTVEWMIDQLK 458
P D + +G A NTV ID+++
Sbjct: 123 PGTIDNDIPGTDFTIGFDTALNTVIDAIDKIR 154
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 122/298 (40%), Gaps = 63/298 (21%)
Query: 197 LAVMHIGAPACGMNAAVRSFCNDNYNTDF-IYRLYSEEGKGLFSAR------QNVLGHMQ 249
+ V+ G + GMNAAVR+ D +Y +Y+ GL S + +V +
Sbjct: 4 IGVLTSGGDSPGMNAAVRAVVRKAIYHDVEVYGIYNGYA-GLISGKIEKLELGSVGDIIH 62
Query: 250 QGGSP------SPFDRNMGTKQAANTAYQAGIQ-LVEARSD--------YKEFCIPMVVI 294
+GG+ F G ++ + GI+ LV D E P V +
Sbjct: 63 RGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEHGFPCVGV 122
Query: 295 PSTISNNVPGTEFSLGCDTALNEIT-------------EEGYTLAVM--HIGAPA--CGM 337
P TI N++PGT+F++G DTALN + E Y + VM H G A G+
Sbjct: 123 PGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTYVIEVMGRHAGDIALWAGL 182
Query: 338 NAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQGGAMLGTKRTLPE 397
S + I D +H+ + L G+ + + S + G G + KR E
Sbjct: 183 AGGAESIL---IPEADY--DMHEIIARLKRGHERGKKHSIIIVAEGVGSGVEFGKRIEEE 237
Query: 398 KKLPQIAAKLKELKIQALLIIGGFEDEQGHMQQGGSPSPFDRNMGTKQAANTVEWMID 455
L E ++ L GH+Q+GGSPS DR + ++ A VE +++
Sbjct: 238 TNL--------ETRVSVL----------GHIQRGGSPSAADRVLASRLGAYAVELLLE 277
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 325 LAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQ 384
+ V+ G A GMNAA+R VR+ + G V+GI+DG GL + + V+ + +
Sbjct: 5 IGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 385 GGAMLGTKRTLPEKKLPQIAA----KLKELKIQALLIIGGFEDEQGHMQQG-------GS 433
GG LG+ R PE + I A LK+ I AL++IGG G M+ G
Sbjct: 65 GGTFLGSAR-FPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIGL 123
Query: 434 PSPFDRN-------MGTKQAANTVEWMIDQLKKCT 461
P D + +G A +TV ID+L+ +
Sbjct: 124 PGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTS 158
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 70 QDTRITVLGHVQRGGSPSAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPL 129
++TR TVLGH+QRGGSP +DR+L RMGA A+ L+ G CV + Q V +
Sbjct: 241 RETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGR--CV-GIQNEQLVHHDI 297
Query: 130 MECVEKTK 137
++ +E K
Sbjct: 298 IDAIENMK 305
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 117/287 (40%), Gaps = 43/287 (14%)
Query: 197 LAVMHIGAPACGMNAA----VRSFCNDNYNTDFIYRLYS--EEGKGLFSARQNVLGHMQQ 250
+ V+ G A GMNAA VRS + IY Y E + + R +V + +
Sbjct: 5 IGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 251 GGS-------PSPFDRNMGTKQAANTAYQAGIQLVEARSD--------YKEFCIPMVVIP 295
GG+ P D N+ N + LV D E P + +P
Sbjct: 65 GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIGLP 124
Query: 296 STISNNVPGTEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDTV 355
TI N++ GT++++G TAL+ + E + + + + + V R C GD
Sbjct: 125 GTIDNDIKGTDYTIGFFTALSTVVE---AIDRLRDTSSSHQRISVVEVMGRYC---GDLT 178
Query: 356 I--GIHDGVEGLVAGNVQIMQ---WSDVTGWVGQG---GAMLGTKRTLPEKKLPQIAAKL 407
+ I G E +V V+ + +++ + +G + T+ +L K
Sbjct: 179 LAAAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEHMCDVDELAHFIEKE 238
Query: 408 KELKIQALLIIGGFEDEQGHMQQGGSPSPFDRNMGTKQAANTVEWMI 454
+ +A ++ GH+Q+GGSP P+DR + ++ A ++ ++
Sbjct: 239 TGRETRATVL--------GHIQRGGSPVPYDRILASRMGAYAIDLLL 277
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 325 LAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQ 384
+ ++ G A GMNAAVR+ R I G V GI G GLVAG++ ++ DV +
Sbjct: 4 IGILTSGGDAPGMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINV 63
Query: 385 GGAMLGTKRTLPE--KKLPQIAA--KLKELKIQALLIIGGFEDEQGHMQ-------QGGS 433
G L + R PE ++ Q+A +LK+ I A+++IGG G +Q G
Sbjct: 64 SGTFLYSAR-YPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRHGFNSIGL 122
Query: 434 PSPFDRN-------MGTKQAANTVEWMIDQLKKCTKPDGSVF 468
P D + +G A T ID+++ VF
Sbjct: 123 PGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASSHHRVF 164
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAXXXXXXXXXNLKQDTRITVLGHVQRGGSP 86
RL + +G+ +++VAEG + TA D R VLGH+QRGG+P
Sbjct: 204 RLKQAQESGKDHGLVVVAEGVM-------TADQFMAELKKYGDFDVRANVLGHMQRGGTP 256
Query: 87 SAFDRVLGCRMGAEAVMALMEATPG 111
+ DRVL ++G+EAV L+E G
Sbjct: 257 TVSDRVLASKLGSEAVHLLLEGKGG 281
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 236 GLFSARQNVLGHMQQGGSPSPFDRNMGTKQAANTAY 271
G F R NVLGHMQ+GG+P+ DR + +K + +
Sbjct: 238 GDFDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVH 273
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 46/182 (25%)
Query: 294 IPSTISNNVPGTEFSLG----CDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCI 349
+P TI N++P T+ ++G C TA++ I + T + H R F+ N +
Sbjct: 122 LPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASSHH------------RVFIVNVM 169
Query: 350 YR--GDTV--IGIHDGVEGLV-----------AGNVQIMQWSDVT-GWVGQGGAMLGTKR 393
R GD +G+ G + +V A ++ Q S G V ++ +
Sbjct: 170 GRNCGDIAMRVGVACGADAIVIPERPYDVEEIANRLKQAQESGKDHGLVVVAEGVMTADQ 229
Query: 394 TLPEKKLPQIAAKLKELKIQALLIIGGFEDEQGHMQQGGSPSPFDRNMGTKQAANTVEWM 453
+ E K K + ++A ++ GHMQ+GG+P+ DR + +K + V +
Sbjct: 230 FMAELK------KYGDFDVRANVL--------GHMQRGGTPTVSDRVLASKLGSEAVHLL 275
Query: 454 ID 455
++
Sbjct: 276 LE 277
>pdb|1VDX|A Chain A, Crystal Structure Of A Pyrococcus Horikoshii Protein With
Similarities To 2'5' Rna-Ligase
Length = 184
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 131 ECVEKTKAVAKAMADKQWDLAVQLRGRQVFPHPSFAR-------NLETYKMLTRL---KP 180
E E+ K + K +A+K V+++G VFP+P++ R N E + + R +
Sbjct: 52 EQAEEIKNILKKIAEKYKKHEVKVKGIGVFPNPNYIRVIWAGIENDEIIREMAREIEDEL 111
Query: 181 PKSAFDEMGRGLEGYTLAVMHIGAPACGMNAAVRSFCNDNYNT 223
K F + G + TL + G+ ++ N+++ +
Sbjct: 112 AKLGFKKEGNFVAHITLGRVKFVKDKLGLTMKLKELANEDFGS 154
>pdb|3AHC|A Chain A, Resting Form Of Phosphoketolase From Bifidobacterium Breve
pdb|3AHD|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
2-Acetyl- Thiamine Diphosphate
pdb|3AHE|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Dihydroxyethyl Thiamine Diphosphate
pdb|3AHF|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Inorganic Phosphate
Length = 845
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 225 FIYRLYSEEGKGLFSARQN-----VLGHMQQGGSPSPFDRNMGTKQAANTAYQAGIQLVE 279
F Y Y+++ +GL R N V+G+ +QG + +PFD A ++L++
Sbjct: 727 FAYHSYAQDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALKLID 786
Query: 280 A 280
A
Sbjct: 787 A 787
>pdb|3AHJ|A Chain A, H553a Mutant Of Phosphoketolase From Bifidobacterium Breve
Length = 845
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 225 FIYRLYSEEGKGLFSARQN-----VLGHMQQGGSPSPFDRNMGTKQAANTAYQAGIQLVE 279
F Y Y+++ +GL R N V+G+ +QG + +PFD A ++L++
Sbjct: 727 FAYHSYAQDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALKLID 786
Query: 280 A 280
A
Sbjct: 787 A 787
>pdb|3AHI|A Chain A, H320a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 225 FIYRLYSEEGKGLFSARQN-----VLGHMQQGGSPSPFDRNMGTKQAANTAYQAGIQLVE 279
F Y Y+++ +GL R N V+G+ +QG + +PFD A ++L++
Sbjct: 727 FAYHSYAQDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALKLID 786
Query: 280 A 280
A
Sbjct: 787 A 787
>pdb|3AHH|A Chain A, H142a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 225 FIYRLYSEEGKGLFSARQN-----VLGHMQQGGSPSPFDRNMGTKQAANTAYQAGIQLVE 279
F Y Y+++ +GL R N V+G+ +QG + +PFD A ++L++
Sbjct: 727 FAYHSYAQDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALKLID 786
Query: 280 A 280
A
Sbjct: 787 A 787
>pdb|3AHG|A Chain A, H64a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With A Tricyclic Ring Form Of Thiamine
Diphosphate
Length = 845
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 225 FIYRLYSEEGKGLFSARQN-----VLGHMQQGGSPSPFDRNMGTKQAANTAYQAGIQLVE 279
F Y Y+++ +GL R N V+G+ +QG + +PFD A ++L++
Sbjct: 727 FAYHSYAQDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALKLID 786
Query: 280 A 280
A
Sbjct: 787 A 787
>pdb|1J36|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J36|B Chain B, Crystal Structure Of Drosophila Ance
pdb|1J37|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J37|B Chain B, Crystal Structure Of Drosophila Ance
pdb|1J38|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J38|B Chain B, Crystal Structure Of Drosophila Ance
Length = 607
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 80/194 (41%), Gaps = 25/194 (12%)
Query: 307 FSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCI--YRGDTVIGIHDGVEG 364
F+ G + L+E ++ + + I A + + +VR + + GD V+ +
Sbjct: 184 FTSGAEAWLDEYEDDTFEQQLEDIFADIRPLYQQIHGYVRFRLRKHYGDAVVSETGPIPM 243
Query: 365 LVAGNVQIMQWSDVTGWVGQGGAMLGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFEDE 424
+ GN+ QWS++ V PEK L ++A++++ L + +D
Sbjct: 244 HLLGNMWAQQWSEIADIVS----------PFPEKPLVDVSAEMEKQAYTPLKMFQMGDDF 293
Query: 425 QGHMQQGGSPSPF-DRNMGTK---------QAANTVEWMID--QLKKCTK-PDGSVFTDS 471
M P F D+++ K A+ ++ID ++K+CT+ +FT
Sbjct: 294 FTSMNLTKLPQDFWDKSIIEKPTDGRDLVCHASAWDFYLIDDVRIKQCTRVTQDQLFTVH 353
Query: 472 PETAVLMGVIRRQY 485
E + ++ Q+
Sbjct: 354 HELGHIQYFLQYQH 367
>pdb|2ZWI|A Chain A, Crystal Structure Of AlphaBETA-Galactoside Alpha-2,3-
Sialyltransferase From A Luminous Marine Bacterium,
photobacterium Phosphoreum
pdb|2ZWI|B Chain B, Crystal Structure Of AlphaBETA-Galactoside Alpha-2,3-
Sialyltransferase From A Luminous Marine Bacterium,
photobacterium Phosphoreum
Length = 373
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 420 GFEDEQGHMQQGGSPSPFDRNMGTKQAANTVEWMIDQLKKCTKPDGSVFTDS 471
GF E+ Q SP +GT T E ID L + KPD + T+S
Sbjct: 219 GFNPEKIKEQYKASPHENFIFIGTNSGTATAEQQIDILTEAKKPDSPIITNS 270
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 143 MADKQWDLAVQLRGRQVFPHPSFARNLETYKMLTRLKPPKSAFD 186
++ ++ D+A + +FPH + +NLE + ++K PK D
Sbjct: 67 LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLD 110
>pdb|2X8Y|A Chain A, Crystal Structure Of Ance
pdb|2X8Z|A Chain A, Crystal Structure Of Ance-Captopril Complex
pdb|2X90|A Chain A, Crystal Structure Of Ance-Enalaprilat Complex
pdb|2X91|A Chain A, Crystal Structure Of Ance-Lisinopril Complex
pdb|2X96|A Chain A, Crystal Structure Of Ance-Rxpa380 Complex
pdb|2X97|A Chain A, Crystal Structure Of Ance-Rxp407 Complex
pdb|2XHM|A Chain A, Crystal Structure Of Ance-K26 Complex
pdb|3ZQZ|A Chain A, Crystal Structure Of Ance In Complex With A Selenium
Analogue Of Captopril
pdb|4AA1|A Chain A, Crystal Structure Of Ance In Complex With Angiotensin-Ii
pdb|4AA2|A Chain A, Crystal Structure Of Ance In Complex With Bradykinin
Potentiating Peptide B
pdb|4ASQ|A Chain A, Crystal Structure Of Ance In Complex With Bradykinin
pdb|4ASR|A Chain A, Crystal Structure Of Ance In Complex With Thr6-Bradykinin
Length = 598
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 307 FSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCI--YRGDTVIGIHDGVEG 364
F+ G + L+E ++ + + I A + + +VR + + GD V+ +
Sbjct: 181 FTSGAEAWLDEYEDDTFEQQLEDIFADIRPLYQQIHGYVRFRLRKHYGDAVVSETGPIPM 240
Query: 365 LVAGNVQIMQWSDVTGWVGQGGAMLGTKRTLPEKKLPQIAAKLKE 409
+ GN+ QWS++ V PEK L ++A++++
Sbjct: 241 HLLGNMWAQQWSEIADIVS----------PFPEKPLVDVSAEMEK 275
>pdb|2X92|A Chain A, Crystal Structure Of Ance-Ramiprilat Complex
pdb|2X93|A Chain A, Crystal Structure Of Ance-Trandolaprilat Complex
pdb|2X94|A Chain A, Crystal Structure Of Ance-Perindoprilat Complex
pdb|2X95|A Chain A, Crystal Structure Of Ance-Lisinopril-Tryptophan Analogue,
Lisw-S Complex
Length = 599
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 307 FSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCI--YRGDTVIGIHDGVEG 364
F+ G + L+E ++ + + I A + + +VR + + GD V+ +
Sbjct: 181 FTSGAEAWLDEYEDDTFEQQLEDIFADIRPLYQQIHGYVRFRLRKHYGDAVVSETGPIPM 240
Query: 365 LVAGNVQIMQWSDVTGWVGQGGAMLGTKRTLPEKKLPQIAAKLKE 409
+ GN+ QWS++ V PEK L ++A++++
Sbjct: 241 HLLGNMWAQQWSEIADIVS----------PFPEKPLVDVSAEMEK 275
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 333 PACGMNA----------AVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWV 382
P CG N + ++ R+C R D I IHD L + W D +
Sbjct: 193 PICGGNGINDSLKEIEGSFQALQRSCQGREDFKISIHDPFAALQKAQKGVTAWDDP--YK 250
Query: 383 GQGGAMLGTKRTLPEKK-LPQI 403
G G ++ K+ P+ K LP I
Sbjct: 251 GNFGQLMALKQAHPDLKILPSI 272
>pdb|1MAE|H Chain H, The Active Site Structure Of Methylamine Dehydrogenase:
Hydrazines Identify C6 As The Reactive Site Of The
Tryptophan Derived Quinone Cofactor
pdb|1MAF|H Chain H, The Active Site Structure Of Methylamine Dehydrogenase:
Hydrazines Identify C6 As The Reactive Site Of The
Tryptophan Derived Quinone Cofactor
pdb|2MAD|H Chain H, The Active Site Structure Of Methylamine Dehydrogenase:
Hydrazines Identify C6 As The Reactive Site Of The
Tryptophan Derived Quinone Cofactor
Length = 373
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 13/128 (10%)
Query: 214 RSFCN-DNYNTDFIYRLYSEEGKGLFSARQNVLGHMQQGGSPSPFDRNMGTKQA-ANTAY 271
RS+ N +++ I + + G G ++LGH+ G P+P + G++ A A+T++
Sbjct: 34 RSYINLPAHHSAIIQQWVLDAGSG------SILGHVNGGFLPNPVAAHSGSEFALASTSF 87
Query: 272 QAGIQLVEA-RSDYKEFCIPMVVIPSTISNNVPGTEFSLGCDTALNEITEEGYTLAVMHI 330
++ + R+DY E P+ +P F +G + +N T L
Sbjct: 88 S---RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF 144
Query: 331 GA-PACGM 337
A PA G+
Sbjct: 145 AAGPAVGL 152
>pdb|1T90|A Chain A, Crystal Structure Of Methylmalonate Semialdehyde
Dehydrogenase From Bacillus Subtilis
pdb|1T90|B Chain B, Crystal Structure Of Methylmalonate Semialdehyde
Dehydrogenase From Bacillus Subtilis
pdb|1T90|C Chain C, Crystal Structure Of Methylmalonate Semialdehyde
Dehydrogenase From Bacillus Subtilis
pdb|1T90|D Chain D, Crystal Structure Of Methylmalonate Semialdehyde
Dehydrogenase From Bacillus Subtilis
Length = 486
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 142 AMADKQWD-LAVQLRGRQVFPHPSFARNLETYKM-LTRL------KPPKSAFDEMGRGLE 193
A A K W +AV R R +F +F + L +K L L K K A E+GRG+E
Sbjct: 53 AEAFKTWSKVAVPRRARILF---NFQQLLSQHKEELAHLITIENGKNTKEALGEVGRGIE 109
Query: 194 GYTLAVMHIGAPACGMNAAVRSFCNDNYNTDFIY 227
A GAP+ M ++ S D ++ Y
Sbjct: 110 NVEFAA---GAPSLMMGDSLASIATDVEAANYRY 140
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 333 PACGMNA----------AVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWV 382
P CG N + ++ R+C R D I IHD L + W D +
Sbjct: 170 PICGGNGINDSLKEIEGSFQALQRSCQGREDFKISIHDPFAALQKAQKGVTAWDDP--YK 227
Query: 383 GQGGAMLGTKRTLPEKK-LPQI 403
G G ++ K+ P+ K LP I
Sbjct: 228 GNFGQLMALKQAHPDLKILPSI 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,122,411
Number of Sequences: 62578
Number of extensions: 624451
Number of successful extensions: 1462
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1353
Number of HSP's gapped (non-prelim): 108
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)