RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5984
(512 letters)
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include eukaryotic ATP-dependent
phosphofructokinases. These have evolved from the
bacterial PFKs by gene duplication and fusion events and
exhibit complex allosteric behavior.
Length = 762
Score = 355 bits (913), Expect = e-114
Identities = 202/518 (38%), Positives = 279/518 (53%), Gaps = 79/518 (15%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSP 86
RL+ R+ G+RLNIIIVAEGAID KPIT+E VK++VVE L DTR+T LGHVQRGG+P
Sbjct: 234 RLSEHRSRGKRLNIIIVAEGAIDDQLKPITSEDVKDLVVERLGLDTRVTTLGHVQRGGTP 293
Query: 87 SAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADK 146
SAFDR+L MG EAVMAL+EATP T CV+SL+GN+AVRLPLMECV+ TK V KAM +K
Sbjct: 294 SAFDRILASLMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAMDEK 353
Query: 147 QWDLAVQLRGRQVFPHPSFARNLETYKMLTRLKPPKSAFDEMGRGLEGYTLAVMHIGAPA 206
++D A LRG+ SF +N YK+L P E +A++++GAPA
Sbjct: 354 RFDEAAALRGK------SFDKNWNLYKLLAIELPQPLP--EKTN----LNIAIVNVGAPA 401
Query: 207 CGMNAAVRS---FCNDNYNTDF-IYRLYSEEGKGLFSARQ------NVLGHMQQGGSPSP 256
GMNAAVRS + + + + IY + GL + +V G +GGS
Sbjct: 402 AGMNAAVRSAVRYGLAHGHRPYAIYDGFE----GLAKGQIVELGWIDVGGWTGRGGSELG 457
Query: 257 FDRNMGTKQ----AAN---------------TAYQAGIQLVEARSDYKEFCIPMVVIPST 297
R + K A N AY+ +QL EAR Y+EFCIPMV+IP+T
Sbjct: 458 TKRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPAT 517
Query: 298 ISNNVPGTEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIG 357
+SNNVPGT+FSLG DTALN + + Y + + R F+ +G
Sbjct: 518 VSNNVPGTDFSLGSDTALNALMK--YCDRIKQSASGTKR-----RVFIVE-------TMG 563
Query: 358 IHDG----VEGLVAG-----------NVQIMQWSDVTGWVGQGGAMLGTKRTLPEKKLPQ 402
+ G + GL G N++ +Q +V + +G L +K +
Sbjct: 564 GYCGYLATMTGLAVGADAAYVFEEPFNIRDLQ-ENVEHLTEKMKTTIGRGLVLRNEKCNE 622
Query: 403 IAAKLKELKIQALLIIGGFEDEQ---GHMQQGGSPSPFDRNMGTKQAANTVEWMIDQLKK 459
+ ++ + G F+ GH+QQGG+PSPFDRN GTK A ++W+ +LK+
Sbjct: 623 NYTTVFTYELYSEEGKGVFDCRTNVLGHVQQGGAPSPFDRNFGTKFAVKAMKWIEQKLKE 682
Query: 460 CTKPDGSVFTDSPETAVLMGVIRRQYCFTPLQTLKKET 497
G+ F + P+ + GV + F P++ LK+ T
Sbjct: 683 NYA-AGNEFANDPDFNCVNGVKKYAVLFEPVEELKQTT 719
Score = 76.8 bits (189), Expect = 1e-14
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 7/105 (6%)
Query: 322 GYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAG--NVQIMQWSDVT 379
G +AV+ G A GMNAAVR+ VR IY G V +++G EGLV G ++ +W V+
Sbjct: 3 GKAIAVLTSGGDAQGMNAAVRAVVRMGIYVGAKVFFVYEGYEGLVKGGDYIKQAEWESVS 62
Query: 380 GWVGQGGAMLGTKR----TLPEKKLPQIAAKLKELKIQALLIIGG 420
W+ +GG ++G+ R E +L Q A L + I L +IGG
Sbjct: 63 NWLQEGGTIIGSARCKEFREREGRL-QAAYNLIQRGITNLCVIGG 106
Score = 47.1 bits (112), Expect = 2e-05
Identities = 81/328 (24%), Positives = 121/328 (36%), Gaps = 92/328 (28%)
Query: 194 GYTLAVMHIGAPACGMNAAVRSFCNDNY----NTDFIYRLYSEEGKGLFSARQ----NVL 245
G +AV+ G A GMNAAVR+ F+Y Y KG +Q +V
Sbjct: 3 GKAIAVLTSGGDAQGMNAAVRAVVRMGIYVGAKVFFVYEGYEGLVKGGDYIKQAEWESVS 62
Query: 246 GHMQQGGS------PSPFDRNMGTKQAANTAYQAGI------------------------ 275
+Q+GG+ F G QAA Q GI
Sbjct: 63 NWLQEGGTIIGSARCKEFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPS 122
Query: 276 ---QLV-------EARSDYKEFCIPMVVIPSTISNNVPGTEFSLGCDTALNEITEEGYTL 325
+LV E + Y+ I +V +I N+ GT+ ++G D+AL+ I E
Sbjct: 123 LLEELVKDGKITEEEVAKYQHLNIVGMV--GSIDNDFCGTDMTIGTDSALHRICE----- 175
Query: 326 AVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVT------ 379
V I A + R+FV V+G H G LV+G W +
Sbjct: 176 VVDAITTTA---QSHQRTFVLE-------VMGRHCGYLALVSGLATGADWIFIPERPPED 225
Query: 380 GWVGQGGAMLGTKRT--------------LPEKKLPQIAAKLKELKIQALLIIGGFEDE- 424
GW Q L R+ + ++ P + +K+L ++ L G +
Sbjct: 226 GWEDQMCRRLSEHRSRGKRLNIIIVAEGAIDDQLKPITSEDVKDLVVERL----GLDTRV 281
Query: 425 --QGHMQQGGSPSPFDRNMGTKQAANTV 450
GH+Q+GG+PS FDR + + V
Sbjct: 282 TTLGHVQRGGTPSAFDRILASLMGVEAV 309
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 746
Score = 354 bits (911), Expect = e-114
Identities = 148/315 (46%), Positives = 186/315 (59%), Gaps = 34/315 (10%)
Query: 31 ERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSPSAFD 90
R AG+R I+IVAEGAIDRD PIT+E VK+V+VE L DTRITVLGHVQRGG+PSAFD
Sbjct: 235 NRKAGKRKTIVIVAEGAIDRDLNPITSEDVKDVLVERLGLDTRITVLGHVQRGGAPSAFD 294
Query: 91 RVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADKQWDL 150
R+L R G EAV+A++E+TP T V+SL GN+ VR PL+E V +TK VAKA+ +K +D
Sbjct: 295 RILATRQGVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAIEEKDFDE 354
Query: 151 AVQLRGRQVFPHPSFARNLETYKMLTRLKPPKSAFDEMGRGLEGYTLAVMHIGAPACGMN 210
A++LRGR FA NLET+ L+ K +A++H+GAPA GMN
Sbjct: 355 AMRLRGR------EFAENLETFLFLSIPDDDKKLVPSEA---SRLRIAIIHVGAPAGGMN 405
Query: 211 AAVRSF---CNDNYNTDF-IYRLYSEEGKGLFS--ARQNVLGHMQQGGSPSPFDRNMGTK 264
AA RS +T I+ +S + +V G + +GGS +R++
Sbjct: 406 AATRSAVRYALARGHTVIAIHNGFSGLARHDVRELTWSDVEGWVGEGGSELGTNRSLPGD 465
Query: 265 QAANTAYQ-------------------AGIQLVEARSDYKEFCIPMVVIPSTISNNVPGT 305
AY A QL AR Y F IPMVVIP+TISNNVPGT
Sbjct: 466 DLGTIAYYFQQHKIDGLIIIGGFEAFEALYQLDAAREKYPAFRIPMVVIPATISNNVPGT 525
Query: 306 EFSLGCDTALNEITE 320
E+SLG DTALNEITE
Sbjct: 526 EYSLGSDTALNEITE 540
Score = 183 bits (467), Expect = 2e-50
Identities = 82/224 (36%), Positives = 108/224 (48%), Gaps = 51/224 (22%)
Query: 240 ARQNVLGHMQQGGSPSPFDRNMGTKQAANTAYQAGIQLVEARSDYKEFCIPMVVIPSTIS 299
R VLGH+Q+GG+PS FDR + T+Q +A + ++E+ + P VI S
Sbjct: 276 TRITVLGHVQRGGAPSAFDRILATRQG----VEAVLAVLESTPE-----TPSPVI-SLRG 325
Query: 300 NN---VP---------------------------GTEF-----------SLGCDTALNEI 318
N P G EF D L
Sbjct: 326 NKIVRKPLVEAVAQTKTVAKAIEEKDFDEAMRLRGREFAENLETFLFLSIPDDDKKLVPS 385
Query: 319 TEEGYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDV 378
+A++H+GAPA GMNAA RS VR + RG TVI IH+G GL +V+ + WSDV
Sbjct: 386 EASRLRIAIIHVGAPAGGMNAATRSAVRYALARGHTVIAIHNGFSGLARHDVRELTWSDV 445
Query: 379 TGWVGQGGAMLGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFE 422
GWVG+GG+ LGT R+LP L IA ++ KI L+IIGGFE
Sbjct: 446 EGWVGEGGSELGTNRSLPGDDLGTIAYYFQQHKIDGLIIIGGFE 489
Score = 95.9 bits (239), Expect = 7e-21
Identities = 33/51 (64%), Positives = 36/51 (70%)
Query: 217 CNDNYNTDFIYRLYSEEGKGLFSARQNVLGHMQQGGSPSPFDRNMGTKQAA 267
+ Y TDFI R+ SEEGKG F AR VLGHMQQGGSPSPFDR T+ A
Sbjct: 620 ASKVYTTDFIARIISEEGKGRFDARTAVLGHMQQGGSPSPFDRVRATRLAI 670
Score = 78.5 bits (194), Expect = 2e-15
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 426 GHMQQGGSPSPFDRNMGTKQAANTVEWMIDQLKKCTKPDGSVFTDSPETAVLMGVIRRQY 485
GHMQQGGSPSPFDR T+ A V+++ +++K D +AV++G+
Sbjct: 649 GHMQQGGSPSPFDRVRATRLAIRAVDFIEEKIKANKHADKLS--ADDTSAVVIGIRGSNV 706
Query: 486 CFTPL-QTLKKETNFE 500
FTP+ Q L ET+FE
Sbjct: 707 LFTPVKQLLANETDFE 722
Score = 78.5 bits (194), Expect = 3e-15
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 325 LAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAG--NVQIMQWSDVTGWV 382
+AV+ G A GMNAAVR+ VR IY G V I +G +GLV G N++ QW DV G +
Sbjct: 3 IAVLTSGGDAQGMNAAVRAVVRMAIYVGCRVYAIREGYQGLVDGGDNIEEAQWEDVRGIL 62
Query: 383 GQGGAMLGTKRTLPEKKLP---QIAAKLKELKIQALLIIGG 420
GG ++GT R ++ P + A L I AL++IGG
Sbjct: 63 SLGGTIIGTARCKEFRERPGRLKAARNLVSNGIDALVVIGG 103
Score = 63.5 bits (155), Expect = 1e-10
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQ--DTRITVLGHVQRGG 84
A R +I+ E A K T + + ++ E K D R VLGH+Q+GG
Sbjct: 604 TFAEGRAGK----LILRNEKAS----KVYTTDFIARIISEEGKGRFDARTAVLGHMQQGG 655
Query: 85 SPSAFDRVLGCRMGAEAV 102
SPS FDRV R+ AV
Sbjct: 656 SPSPFDRVRATRLAIRAV 673
Score = 41.2 bits (97), Expect = 0.001
Identities = 76/322 (23%), Positives = 119/322 (36%), Gaps = 86/322 (26%)
Query: 197 LAVMHIGAPACGMNAAVRS------FCN-DNYNTDFIYRLYSEEGKGLFSARQ----NVL 245
+AV+ G A GMNAAVR+ + Y I Y G + + +V
Sbjct: 3 IAVLTSGGDAQGMNAAVRAVVRMAIYVGCRVY---AIREGYQGLVDGGDNIEEAQWEDVR 59
Query: 246 GHMQQGGSPSPFDRNM------GTKQAANTAYQAGI------------------------ 275
G + GG+ R G +AA GI
Sbjct: 60 GILSLGGTIIGTARCKEFRERPGRLKAARNLVSNGIDALVVIGGDGSLTGADLFREEWPS 119
Query: 276 ---QLVEARS----DYKEFCIPMVV-IPSTISNNVPGTEFSLGCDTALNEITEEGYTLAV 327
+LV+ +E +V + +I N++ GT+ ++G D+AL+ I E A+
Sbjct: 120 LLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALHRICE-----AI 174
Query: 328 MHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAG------NVQIMQWSDVTGW 381
I + A + R+FV V+G H G L+A V I + GW
Sbjct: 175 DAISSTA---QSHQRAFVVE-------VMGRHCGYLALMAAIATGADYVFIPERPPEEGW 224
Query: 382 VGQGGAMLGTKRTLPEKKLPQIAA---------KLKELKIQALLIIGGFEDEQ----GHM 428
Q L R ++K I A + ++ +L+ D + GH+
Sbjct: 225 EDQLCHKLKRNRKAGKRKTIVIVAEGAIDRDLNPITSEDVKDVLVERLGLDTRITVLGHV 284
Query: 429 QQGGSPSPFDRNMGTKQAANTV 450
Q+GG+PS FDR + T+Q V
Sbjct: 285 QRGGAPSAFDRILATRQGVEAV 306
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 157 bits (399), Expect = 9e-44
Identities = 61/127 (48%), Positives = 80/127 (62%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSP 86
+ R G+R I+IVAEGAID KPIT + + ++V E L DTR TVLGHVQRGG+P
Sbjct: 212 VIKKRRERGKRHGIVIVAEGAIDFIPKPITEKLLAKLVEERLGFDTRATVLGHVQRGGTP 271
Query: 87 SAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADK 146
+AFDR+L R+GAEAV L+E T GT + +L+ NQ VR PL E V TK V + +
Sbjct: 272 TAFDRILASRLGAEAVELLLEGTGGTPVGIQNLNENQVVRHPLTEAVNMTKRVGVDLEGR 331
Query: 147 QWDLAVQ 153
+ +
Sbjct: 332 PFKKFAK 338
Score = 90.8 bits (226), Expect = 5e-20
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 25/156 (16%)
Query: 326 AVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQG 385
V+ G A GMNAA+R VR+ I G V GI++G GLV G+++ + W V+ + +G
Sbjct: 4 GVLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIYEGYAGLVEGDIKELDWESVSDIINRG 63
Query: 386 GAMLGTKRTLPEKKLPQIAAK----LKELKIQALLIIGG-------------FEDEQGHM 428
G ++G+ R E + + AK LK+ I AL++IGG + +
Sbjct: 64 GTIIGSARC-KEFRTEEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGF 122
Query: 429 QQGGSPSPFDRNM-------GTKQAANTVEWMIDQL 457
G P D ++ G A T+ ID++
Sbjct: 123 NVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRI 158
Score = 56.5 bits (137), Expect = 1e-08
Identities = 74/303 (24%), Positives = 117/303 (38%), Gaps = 67/303 (22%)
Query: 198 AVMHIGAPACGMNAAVRSFCN----DNYNTDFIYRLYSEEGKGLFSA------RQNVLGH 247
V+ G A GMNAA+R + IY Y+ GL ++V
Sbjct: 4 GVLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIYEGYA----GLVEGDIKELDWESVSDI 59
Query: 248 MQQGG-------SPSPFDRNMGTKQAANTAYQAGIQ-LV----------------EARSD 283
+ +GG G +AA + GI LV E S
Sbjct: 60 INRGGTIIGSARCKEFRTEE-GRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSK 118
Query: 284 YKEFCIPMVVIPSTISNNVPGTEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRS 343
Y+ F ++ +P TI N++ GT++++G DTAL I E A+ I A R+
Sbjct: 119 YQGF--NVIGLPGTIDNDIKGTDYTIGFDTALKTIVE-----AIDRIRDTASSHQ---RT 168
Query: 344 FV-----RNCIYRGDT--VIGIHDGVEGLVAGN-VQIMQWSDVTGWVGQGGAMLGTKRTL 395
FV R+C GD G+ G + + +W + V + G + +
Sbjct: 169 FVVEVMGRHC---GDIALEAGLATGADIIFIPEEPAADEWEEEMVDVIKKRRERGKRHGI 225
Query: 396 ---PEKKLPQIAAKLKELKIQALLI-IGGFEDEQ---GHMQQGGSPSPFDRNMGTKQAAN 448
E + I + E + L+ GF+ GH+Q+GG+P+ FDR + ++ A
Sbjct: 226 VIVAEGAIDFIPKPITEKLLAKLVEERLGFDTRATVLGHVQRGGTPTAFDRILASRLGAE 285
Query: 449 TVE 451
VE
Sbjct: 286 AVE 288
Score = 48.4 bits (116), Expect = 4e-06
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 224 DFIYRLYSEEG-------KGLFSARQNVLGHMQQGGSPSPFDRNMGTKQAANTAYQAGIQ 276
DFI + +E+ + F R VLGH+Q+GG+P+ FDR + ++ A A
Sbjct: 234 DFIPKPITEKLLAKLVEERLGFDTRATVLGHVQRGGTPTAFDRILASRLGAE----AVEL 289
Query: 277 LVEARSDY 284
L+E
Sbjct: 290 LLEGTGGT 297
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase.
Length = 279
Score = 111 bits (279), Expect = 1e-27
Identities = 53/81 (65%), Positives = 63/81 (77%), Gaps = 5/81 (6%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSP 86
RL R G+R NI+IVAEGAID PIT+E VK++VVE DTR+TVLGHVQRGG+P
Sbjct: 204 RLKRGRERGKRHNIVIVAEGAID----PITSEFVKKLVVE-GGYDTRVTVLGHVQRGGTP 258
Query: 87 SAFDRVLGCRMGAEAVMALME 107
+AFDR+L RMGAEAV AL+E
Sbjct: 259 TAFDRILASRMGAEAVEALLE 279
Score = 90.5 bits (225), Expect = 3e-20
Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 22/154 (14%)
Query: 325 LAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQ 384
+ V+ G A GMNAA+R+ VR+ I G V GI++G GLVAGN++ + W V+ + +
Sbjct: 3 IGVLTSGGDAPGMNAAIRAVVRSAIAEGLEVYGIYEGYAGLVAGNIKQLDWESVSDIIQR 62
Query: 385 GGAMLGTKRTLPEKKLPQI----AAKLKELKIQALLIIGG---------FEDEQGHMQQG 431
GG +G+ R PE + + A LK+ I AL++IGG E G
Sbjct: 63 GGTFIGSAR-CPEFREREGRLKAAENLKKHGIDALVVIGGDGSYTGADLLTSEHG-FNCV 120
Query: 432 GSPSPFDRNM-------GTKQAANTVEWMIDQLK 458
G P D ++ G A NT+ ID+++
Sbjct: 121 GLPGTIDNDICGTDYTIGFDTALNTIVEAIDRIR 154
Score = 67.0 bits (164), Expect = 3e-12
Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 70/303 (23%)
Query: 197 LAVMHIGAPACGMNAAVRSFCN----DNYNTDFIYRLYSEEGKGLFSA------RQNVLG 246
+ V+ G A GMNAA+R+ + IY Y+ GL + ++V
Sbjct: 3 IGVLTSGGDAPGMNAAIRAVVRSAIAEGLEVYGIYEGYA----GLVAGNIKQLDWESVSD 58
Query: 247 HMQQGG-------SPSPFDRNMGTKQAANTAYQAGIQ-LVEARSD---------YKEFCI 289
+Q+GG P +R G +AA + GI LV D E
Sbjct: 59 IIQRGGTFIGSARCPEFRERE-GRLKAAENLKKHGIDALVVIGGDGSYTGADLLTSEHGF 117
Query: 290 PMVVIPSTISNNVPGTEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFV---- 345
V +P TI N++ GT++++G DTALN I E A+ I A R+FV
Sbjct: 118 NCVGLPGTIDNDICGTDYTIGFDTALNTIVE-----AIDRIRDTASSHQ---RTFVVEVM 169
Query: 346 -RNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQGGAMLGTKRT---------L 395
R+C GD + + G +AG + + W + L R +
Sbjct: 170 GRHC---GD--LALVAG----IAGGADYIFIPEAPFWEEELCNRLKRGRERGKRHNIVIV 220
Query: 396 PEKKLPQIAAKLKELKIQALLIIGGFEDEQ---GHMQQGGSPSPFDRNMGTKQAANTVEW 452
E + I ++ + L++ GG++ GH+Q+GG+P+ FDR + ++ A VE
Sbjct: 221 AEGAIDPITSEFVK----KLVVEGGYDTRVTVLGHVQRGGTPTAFDRILASRMGAEAVEA 276
Query: 453 MID 455
+++
Sbjct: 277 LLE 279
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 104 bits (261), Expect = 1e-24
Identities = 46/110 (41%), Positives = 65/110 (59%), Gaps = 10/110 (9%)
Query: 32 RTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSPSAFDR 91
R G++ II+VAEG + AE++ + + E +TR+TVLGH+QRGGSP+AFDR
Sbjct: 209 RERGKKHAIIVVAEGVMP-------AEELAKEIEERTGLETRVTVLGHIQRGGSPTAFDR 261
Query: 92 VLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAK 141
VL RMGA AV L+E G ++ + N+ V +P+ E VE K
Sbjct: 262 VLASRMGAHAVELLLEGKGGR---MVGIQNNKIVHVPIEEAVENMKHPFD 308
Score = 89.4 bits (223), Expect = 1e-19
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 332 APACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQGGAMLGT 391
AP GMNAA+R+ VR I G V GI+DG GL+ G++ + V+ + +GG +LG+
Sbjct: 13 AP--GMNAAIRAVVRTAISEGLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGS 70
Query: 392 KRTLPEKKL---PQIAAKLKELKIQALLIIGG 420
R K + LK+L I AL++IGG
Sbjct: 71 ARFPEFKDEEGRAKAIENLKKLGIDALVVIGG 102
Score = 50.5 bits (122), Expect = 9e-07
Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 204 APACGMNAAVRSFC----NDNYNTDFIYRLYSEEGKGLFSAR------QNVLGHMQQGG- 252
AP GMNAA+R+ ++ IY Y GL ++V + +GG
Sbjct: 13 AP--GMNAAIRAVVRTAISEGLEVYGIYDGY----AGLLEGDIVKLDLKSVSDIINRGGT 66
Query: 253 ------SPSPFDRNMGTKQAANTAYQAGIQ-LVEARSD--YK------EFCIPMVVIPST 297
P F G +A + GI LV D Y E IP++ +P T
Sbjct: 67 ILGSARFP-EFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGT 125
Query: 298 ISNNVPGTEFSLGCDTALNEITE 320
I N++ GT++++G DTALN E
Sbjct: 126 IDNDIAGTDYTIGFDTALNTAVE 148
Score = 44.3 bits (106), Expect = 8e-05
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 233 EGKGLFSARQNVLGHMQQGGSPSPFDRNMGTK 264
E + R VLGH+Q+GGSP+ FDR + ++
Sbjct: 235 EERTGLETRVTVLGHIQRGGSPTAFDRVLASR 266
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
metabolism].
Length = 347
Score = 103 bits (260), Expect = 2e-24
Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 6/110 (5%)
Query: 35 GQRLNIIIVAEGAIDRDGKPI--TAEKVKEVVVENLKQDTRITVLGHVQRGGSPSAFDRV 92
G++ II+VAEGAID+ G+ ++E++ +TR+TVLGH+QRGG+PSAFDRV
Sbjct: 217 GKKHAIIVVAEGAIDQIGENGAELLAAIEELLALGDF-ETRVTVLGHIQRGGTPSAFDRV 275
Query: 93 LGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKA 142
L R+GA AV L+E G V + N+ V +P+ E V K V
Sbjct: 276 LASRLGAAAVDLLLEGKTG--YMV-GIRNNKIVHVPIDEAVAPLKMVMSL 322
Score = 89.6 bits (223), Expect = 2e-19
Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 324 TLAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVG 383
+A++ G A GMNA +R+ VR I G V GI++G GL+ G+++ + DV +
Sbjct: 4 KIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNGYLGLLEGDIKPLTREDVDDLIN 63
Query: 384 QGGAMLGTKR---TLPEKKLPQIAAKLKELKIQALLIIGG 420
+GG LG+ R E+ A LK+L I AL++IGG
Sbjct: 64 RGGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGG 103
Score = 53.4 bits (129), Expect = 1e-07
Identities = 43/157 (27%), Positives = 63/157 (40%), Gaps = 42/157 (26%)
Query: 196 TLAVMHIGAPACGMNAAVRSFCNDNYNTDFIYRLYSEEGKGLFSARQNVLGHM------- 248
+A++ G A GMNA +R+ + R +EG +F LG +
Sbjct: 4 KIAILTSGGDAPGMNAVIRA----------VVRTAIKEGLEVFGIYNGYLGLLEGDIKPL 53
Query: 249 ---------QQGGSPS------PFDRNMGTKQAANTAYQAGIQ-LV---------EARSD 283
+GG+ F G K AA + GI LV A
Sbjct: 54 TREDVDDLINRGGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALL 113
Query: 284 YKEFCIPMVVIPSTISNNVPGTEFSLGCDTALNEITE 320
+E IP+V +P TI N++ GT+F++G DTAL E
Sbjct: 114 AEEGGIPVVGVPKTIDNDISGTDFTIGFDTALETAVE 150
Score = 43.8 bits (104), Expect = 1e-04
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 233 EGKGLFSARQNVLGHMQQGGSPSPFDRNMGTKQAANTA 270
G F R VLGH+Q+GG+PS FDR + ++ A
Sbjct: 248 LALGDFETRVTVLGHIQRGGTPSAFDRVLASRLGAAAV 285
Score = 42.2 bits (100), Expect = 4e-04
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 402 QIAAKLKELKIQALLIIGGFEDEQGHMQQGGSPSPFDRNMGTKQAANTVE 451
+A E ++ L GH+Q+GG+PS FDR + ++ A V+
Sbjct: 247 LLALGDFETRVTVL----------GHIQRGGTPSAFDRVLASRLGAAAVD 286
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 90.9 bits (226), Expect = 3e-20
Identities = 50/106 (47%), Positives = 66/106 (62%), Gaps = 10/106 (9%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSP 86
RL + AG++ +IIIVAEG I K + A+K++E +TR+TVLGH QRGGSP
Sbjct: 203 RLKEQHEAGKKHSIIIVAEGNIVGSAKEV-AKKIEEKT----GIETRVTVLGHTQRGGSP 257
Query: 87 SAFDRVLGCRMGAEAVMALMEATPGTEPCVM-SLDGNQAVRLPLME 131
SAFDRVL R+GA+AV L+E G VM + N+ V P+ E
Sbjct: 258 SAFDRVLASRLGAKAVELLLEGKGG----VMIGIQNNKIVTHPIEE 299
Score = 75.1 bits (185), Expect = 7e-15
Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 5/100 (5%)
Query: 325 LAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQ 384
+ ++ G A GMNAA+R+ VR IY G V GI G +GL+ G ++ ++ +V+G + +
Sbjct: 2 IGILTSGGDAPGMNAAIRAVVRTAIYHGFEVYGIRRGYKGLINGKIEPLESKNVSGIIHR 61
Query: 385 GGAMLGTKRTLPEKKLP---QIAAK-LKELKIQALLIIGG 420
GG +LGT R PE K + A + LK+L I+ L++IGG
Sbjct: 62 GGTILGTAR-CPEFKTEEVREKAVENLKKLGIEGLVVIGG 100
Score = 71.2 bits (175), Expect = 1e-13
Identities = 70/303 (23%), Positives = 122/303 (40%), Gaps = 70/303 (23%)
Query: 197 LAVMHIGAPACGMNAAVRSFCNDNYNTDF----IYRLYSE--EGKGLFSARQNVLGHMQQ 250
+ ++ G A GMNAA+R+ F I R Y GK +NV G + +
Sbjct: 2 IGILTSGGDAPGMNAAIRAVVRTAIYHGFEVYGIRRGYKGLINGKIEPLESKNVSGIIHR 61
Query: 251 GG-----SPSP-FDRNMGTKQAANTAYQAGIQ----------LVEARSDYKEFCIPMVVI 294
GG + P F ++A + GI+ A+ Y+E IP++ +
Sbjct: 62 GGTILGTARCPEFKTEEVREKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGL 121
Query: 295 PSTISNNVPGTEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDT 354
P TI N++PGT++++G DTALN I + AV I A R+FV + R
Sbjct: 122 PGTIDNDIPGTDYTIGFDTALNTIID-----AVDKIRDTATSHE---RAFVIEVMGRHAG 173
Query: 355 VIGIHDGVEGLVAGNVQIMQWSDVTGWVGQGGAMLGTKRTLPEKKLPQIAAKLKELKIQA 414
+ ++ G+ G ++ ++ + ++ + + K +
Sbjct: 174 DLALYAGIAT------------------GAEIIIIPEFDYDIDELIQRLKEQHEAGKKHS 215
Query: 415 LLII-------GGFEDEQ---------------GHMQQGGSPSPFDRNMGTKQAANTVEW 452
++I+ E + GH Q+GGSPS FDR + ++ A VE
Sbjct: 216 IIIVAEGNIVGSAKEVAKKIEEKTGIETRVTVLGHTQRGGSPSAFDRVLASRLGAKAVEL 275
Query: 453 MID 455
+++
Sbjct: 276 LLE 278
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 87.9 bits (218), Expect = 4e-19
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 14/128 (10%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSP 86
R+ G++ I++VAEG D +++ + + E +TR TVLGH+QRGGSP
Sbjct: 203 RIKAGIERGKKHAIVVVAEGVYD-------VDELAKEIEEATGFETRATVLGHIQRGGSP 255
Query: 87 SAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADK 146
+AFDR+L RMGA AV L+ G V + Q V +++ +E K K
Sbjct: 256 TAFDRILASRMGAYAVELLLAGKGGL--AV-GIQNEQLVHHDIIDAIENMKPFKKDW--- 309
Query: 147 QWDLAVQL 154
LA +L
Sbjct: 310 -LALAKKL 316
Score = 77.4 bits (191), Expect = 1e-15
Identities = 54/152 (35%), Positives = 76/152 (50%), Gaps = 19/152 (12%)
Query: 325 LAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQ 384
+ V+ G A GMNAA+R VR+ I G V GI DG GL+AG++ + V+ + +
Sbjct: 3 IGVLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINR 62
Query: 385 GGAMLGTKRTLPEKKLPQIAAK----LKELKIQALLIIGGFEDEQGHMQ---QG----GS 433
GG LG+ R PE K + AK LK+ I AL++IGG G M+ G G
Sbjct: 63 GGTFLGSAR-FPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGL 121
Query: 434 PSPFDRNM-------GTKQAANTVEWMIDQLK 458
P D ++ G A NTV ID+++
Sbjct: 122 PGTIDNDIPGTDYTIGFDTALNTVVEAIDRIR 153
Score = 52.4 bits (126), Expect = 2e-07
Identities = 80/311 (25%), Positives = 120/311 (38%), Gaps = 89/311 (28%)
Query: 197 LAVMHIGAPACGMNAA----VRSFCNDNYNTDFIYRLYSEEGKGLFSARQNVLGH----- 247
+ V+ G A GMNAA VRS + I Y+ GL + L
Sbjct: 3 IGVLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIRDGYA----GLIAGDIVPLDRYSVSD 58
Query: 248 -MQQGGS-----PSP-FDRNMGTKQAANTAYQAGIQ-LVEARSD--YK------EFCIPM 291
+ +GG+ P F G +A + GI LV D Y E P
Sbjct: 59 IINRGGTFLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPC 118
Query: 292 VVIPSTISNNVPGTEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCIYR 351
V +P TI N++PGT++++G DTALN + E A+ I + R V
Sbjct: 119 VGLPGTIDNDIPGTDYTIGFDTALNTVVE-----AIDRIRDTSSSHQ---RISVVE---- 166
Query: 352 GDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVG-QGGAMLGTKRTLPEKKL--PQIAAKLK 408
V+G H G D+ G GGA +PE + ++A ++K
Sbjct: 167 ---VMGRHCG---------------DIALAAGIAGGA---EFIVIPEAEFDREEVANRIK 205
Query: 409 EL----KIQALLII-----------------GGFEDEQ---GHMQQGGSPSPFDRNMGTK 444
K A++++ GFE GH+Q+GGSP+ FDR + ++
Sbjct: 206 AGIERGKKHAIVVVAEGVYDVDELAKEIEEATGFETRATVLGHIQRGGSPTAFDRILASR 265
Query: 445 QAANTVEWMID 455
A VE ++
Sbjct: 266 MGAYAVELLLA 276
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family
that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 324
Score = 83.5 bits (207), Expect = 1e-17
Identities = 44/118 (37%), Positives = 60/118 (50%), Gaps = 19/118 (16%)
Query: 32 RTAGQRLNIIIVAEGAIDRDGKPITAEKVKEV----------------VVENLKQDTRIT 75
G+R I++VAEGA + G+ + E VK+ + +TR T
Sbjct: 210 FARGKRFAIVVVAEGAKPKGGEMVVQEGVKDAFGHVRLGGIGNWLAEEIERRTGIETRAT 269
Query: 76 VLGHVQRGGSPSAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECV 133
VLGH+QRGGSPSAFDRVL R G AV + E G +++L G V +P+ E V
Sbjct: 270 VLGHLQRGGSPSAFDRVLATRFGVAAVDLVHEGQFGH---MVALRGTDIVYVPIAEAV 324
Score = 68.1 bits (167), Expect = 2e-12
Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 6/102 (5%)
Query: 325 LAVMHIGAPACGMNAAVRSFVRNCIY-RGDTVIGIHDGVEGLVAGN-VQIMQWSDVTGWV 382
+ V+ G G+NA +R VR I G VIGI DG GL+ G+ V ++ DV G +
Sbjct: 2 IGVLTGGGDCPGLNAVIRGVVRRAIAEYGWEVIGIRDGWRGLLEGDTVPLLDLEDVRGIL 61
Query: 383 GQGGAMLGTKRTLPEKK----LPQIAAKLKELKIQALLIIGG 420
+GG +LG+ RT P K +I A LKEL + AL+ IGG
Sbjct: 62 PRGGTILGSSRTNPFKYEEDGDDKIVANLKELGLDALIAIGG 103
Score = 44.6 bits (106), Expect = 7e-05
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 240 ARQNVLGHMQQGGSPSPFDRNMGTK 264
R VLGH+Q+GGSPS FDR + T+
Sbjct: 266 TRATVLGHLQRGGSPSAFDRVLATR 290
Score = 40.7 bits (96), Expect = 0.001
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 289 IPMVVIPSTISNNVPGTEFSLGCDTALNEITE 320
+P+V +P TI N++ T+++ G DTA+ TE
Sbjct: 118 LPVVGVPKTIDNDLEATDYTFGFDTAVEIATE 149
Score = 40.4 bits (95), Expect = 0.002
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 426 GHMQQGGSPSPFDRNMGTKQAANTVE 451
GH+Q+GGSPS FDR + T+ V+
Sbjct: 272 GHLQRGGSPSAFDRVLATRFGVAAVD 297
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 57.0 bits (138), Expect = 7e-09
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 35 GQRLNIIIVAEGAIDRDGKPITAEK-------------VKEVVVENLKQDTRITVLGHVQ 81
G+ +++V+E +G+ +T + + E + E +TR+TVLGH+Q
Sbjct: 227 GKNFCLVVVSEAVRTEEGEQVTKTQALGEDRYGGIGQYLAEQIAERTGAETRVTVLGHIQ 286
Query: 82 RGGSPSAFDRVLGCRMGAEAV 102
RGG PS DR+L G AV
Sbjct: 287 RGGIPSPRDRLLASAFGVAAV 307
Score = 43.5 bits (103), Expect = 2e-04
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 289 IPMVVIPSTISNNVPGTEFSLGCDTALNEITE 320
I +V IP TI N+V TE S+G DTA+N TE
Sbjct: 132 INLVGIPKTIDNDVGATEVSIGFDTAVNIATE 163
Score = 42.4 bits (100), Expect = 4e-04
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 331 GAPACGMNAAVRSFVRNCIYR-GDTVIGIHDGVEGLVAGNVQIMQWS--DVTGWVGQGGA 387
G G+NA +R+ V G VIGI D +GL+A Q ++ V + GG
Sbjct: 13 GGDCAGLNAVIRAVVHRARGTYGWEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGT 72
Query: 388 MLGTKRT-------LPEKKL----PQIAAKLKELKIQALLIIGG 420
+LGT +P+ L +I L + AL+ IGG
Sbjct: 73 ILGTTNKGDPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGG 116
Score = 36.6 bits (85), Expect = 0.026
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 241 RQNVLGHMQQGGSPSPFDRNMGT 263
R VLGH+Q+GG PSP DR + +
Sbjct: 278 RVTVLGHIQRGGIPSPRDRLLAS 300
Score = 31.2 bits (71), Expect = 1.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 426 GHMQQGGSPSPFDRNMGT 443
GH+Q+GG PSP DR + +
Sbjct: 283 GHIQRGGIPSPRDRLLAS 300
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 38.5 bits (90), Expect = 0.007
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 336 GMNAAVRSFVRNCI--YRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQGGAMLGTKR 393
G+N +R V N I Y T+ G G +GL + + DV GG +LG+ R
Sbjct: 101 GLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSR 160
Query: 394 TLPEKKLPQIAAKLKELKIQALLIIGG 420
+ K+ + L I L +GG
Sbjct: 161 GGFDPKV--MVDTLIRHGINILFTLGG 185
Score = 30.0 bits (68), Expect = 3.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 262 GTKQAANTAYQAGIQLVEARSDYKEFCIPMVVIPSTISNNVPGTEFSLGCDTALNE 317
GT + A Y+ E R ++ I +V IP TI N++P + S G TA+ E
Sbjct: 187 GTHRGALAIYK------ELRR--RKLNISVVGIPKTIDNDIPIIDESFGFQTAVEE 234
>gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein
[ACP] reductase (BKR), subgroup 1, classical (c) SDR.
This subgroup includes Escherichia coli CFT073 FabG. The
Escherichai coli K12 BKR, FabG, belongs to a different
subgroup. BKR catalyzes the NADPH-dependent reduction of
ACP in the first reductive step of de novo fatty acid
synthesis (FAS). FAS consists of four elongation steps,
which are repeated to extend the fatty acid chain
through the addition of two-carbo units from malonyl
acyl-carrier protein (ACP): condensation, reduction,
dehydration, and a final reduction. Type II FAS, typical
of plants and many bacteria, maintains these activities
on discrete polypeptides, while type I FAS utilizes one
or two multifunctional polypeptides. BKR resembles enoyl
reductase, which catalyzes the second reduction step in
FAS. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet) NAD(P)(H) binding
region and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRS are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes have a 3-glycine N-terminal NAD(P)(H) binding
pattern: TGxxxGxG in classical SDRs. Extended SDRs have
additional elements in the C-terminal region, and
typically have a TGXXGXXG cofactor binding motif.
Complex (multidomain) SDRs such as ketoreductase domains
of fatty acid synthase have a GGXGXXG NAD(P) binding
motif and an altered active site motif (YXXXN). Fungal
type type ketoacyl reductases have a TGXXXGX(1-2)G
NAD(P)-binding motif. Some atypical SDRs have lost
catalytic activity and/or have an unusual NAD(P) binding
motif and missing or unusual active site residues.
Reactions catalyzed within the SDR family include
isomerization, decarboxylation, epimerization, C=N bond
reduction, dehydratase activity, dehalogenation,
Enoyl-CoA reduction, and carbonyl-alcohol
oxidoreduction. A critical catalytic Tyr residue
(Tyr-151, human 15-hydroxyprostaglandin dehydrogenase
(15-PGDH) numbering), is often found in a conserved
YXXXK pattern. In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) or additional
Ser, contributing to the active site. Substrates for
these enzymes include sugars, steroids, alcohols, and
aromatic compounds. The standard reaction mechanism is a
proton relay involving the conserved Tyr-151 and
Lys-155, and well as Asn-111 (or Ser). Some SDR family
members, including 17 beta-hydroxysteroid dehydrogenase
contain an additional helix-turn-helix motif that is not
generally found among SDRs.
Length = 255
Score = 33.2 bits (76), Expect = 0.27
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 12/65 (18%)
Query: 433 SPSPFDRNMG---------TKQAANTVEWMIDQLKKCTKPDGSVFTDSPETAVLMGVIRR 483
+ FDR + T+ A M++Q + P S+ + A L+ R
Sbjct: 101 TEDSFDRLIAINLRGPFFLTQAVAR---RMVEQPDRFDGPHRSIIFVTSINAYLVSPNRG 157
Query: 484 QYCFT 488
+YC +
Sbjct: 158 EYCIS 162
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional.
Length = 416
Score = 32.9 bits (76), Expect = 0.36
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 12/45 (26%)
Query: 40 IIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGG 84
+++V+EG D DGK I + GH Q GG
Sbjct: 240 VVVVSEGIRDADGKFIA------------EAGLAEDAFGHAQLGG 272
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 33.4 bits (77), Expect = 0.36
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 384 QGG-AMLGTKRTLPEKK--LPQIAAKLKELKIQALLIIGG 420
GG M+G+ RT E + +K+LK+ L+IIGG
Sbjct: 134 TGGFDMIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGG 173
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate
1-phosphotransferase. Diphosphate--fructose-6-phosphate
1-phosphotransferase catalyzes the addition of phosphate
from diphosphate (PPi) to fructose 6-phosphate to give
fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is
also known as pyrophosphate-dependent
phosphofructokinase. The usage of PPi-dependent enzymes
in glycolysis presumably frees up ATP for other
processes. TIGR02482 represents the ATP-dependent
6-phosphofructokinase enzyme contained within Pfam
pfam00365: Phosphofructokinase. This model hits
primarily bacterial, plant alpha, and plant beta
sequences [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 539
Score = 32.7 bits (75), Expect = 0.48
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 17/108 (15%)
Query: 324 TLAVMHIGAPA-------CGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWS 376
+ V+ G A G+ A++ N + G G GL+ N +
Sbjct: 69 KIGVILSGGQAPGGHNVISGLFDALKKLNPN-----SKLYGFIGGPLGLLDNNYVELTKE 123
Query: 377 DVTGWVGQGG-AMLGTKRTLPEKKLPQIAAKL---KELKIQALLIIGG 420
+ + GG ++G+ RT E + Q A L K+LK+ L+IIGG
Sbjct: 124 LIDTYRNTGGFDIIGSGRTKIETE-EQFAKALTTAKKLKLDGLVIIGG 170
>gnl|CDD|203598 pfam07229, VirE2, VirE2. This family consists of several VirE2
proteins which seem to be specific to Agrobacterium
tumefaciens and Rhizobium etli. VirE2 is known to
interact, via its C terminus, with VirD4. Agrobacterium
tumefaciens transfers oncogenic DNA and effector
proteins to plant cells during the course of infection.
Substrate translocation across the bacterial cell
envelope is mediated by a type IV secretion (TFS) system
composed of the VirB proteins, as well as VirD4, a
member of a large family of inner membrane proteins
implicated in the coupling of DNA transfer intermediates
to the secretion machine. VirE2 is therefore thought to
be a protein substrate of a type IV secretion system
which is recruited to a member of the coupling protein
superfamily.
Length = 553
Score = 29.9 bits (67), Expect = 3.3
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 20 GLPKSTGR------LACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENL 68
GLP S GR + E+ Q +IVA+G RD + ++ EK++++ +++
Sbjct: 425 GLPHSMGRQSHANSIKFEQFDRQA--AVIVADGPNLRDIRDLSPEKLQQLSTKDV 477
>gnl|CDD|221010 pfam11164, DUF2948, Protein of unknown function (DUF2948). This
family of proteins with unknown function appear to be
restricted to Proteobacteria.
Length = 138
Score = 28.7 bits (65), Expect = 4.1
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
Query: 88 AFDRVLGCR-----MGA-EAVMAL--MEATPGTEP---CVMSLDGNQAVRLPLMECVE 134
FDRVL + G +AV++L + PG +P +++ G A+RL + EC+E
Sbjct: 64 HFDRVLAVKSQGIDRGDPDAVLSLLAIRFEPGEDPAGTVLLTFAGGGAIRLDV-ECLE 120
>gnl|CDD|217057 pfam02472, ExbD, Biopolymer transport protein ExbD/TolR. This
group of proteins are membrane bound transport proteins
essential for ferric ion uptake in bacteria. The Pfam
family consists of ExbD, and TolR which are involved in
TonB-dependent transport of various receptor bound
substrates including colicins.
Length = 128
Score = 28.0 bits (63), Expect = 5.4
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 21 LPKSTGRLACERTAGQRLNIIIV--AEGAIDRDGKPITAEKVKEVVVENLKQDTRITVL 77
LP ++ ++ +II A+G I DGKP+ E+++ + E K D V+
Sbjct: 40 LPSAS----SSALVEEKEALIISVDADGKIYLDGKPVDLEELEAKLKELKKDDPDQVVI 94
>gnl|CDD|236859 PRK11143, glpQ, glycerophosphodiester phosphodiesterase;
Provisional.
Length = 355
Score = 28.9 bits (65), Expect = 6.0
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 447 ANTVEWMIDQLKKCTKPDGSVFTDSPETAV 476
A V + D L DG VFTD P+ AV
Sbjct: 320 ATDVNQLYDILYNQAGVDG-VFTDFPDKAV 348
>gnl|CDD|130079 TIGR01006, polys_exp_MPA1, polysaccharide export protein, MPA1
family, Gram-positive type. This family contains
members from Low GC Gram-positive bacteria; they are
proposed to have a function in the export of complex
polysaccharides [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 226
Score = 28.6 bits (64), Expect = 6.2
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 259 RNMGTKQAANTAYQAGIQLVEARSDYKEFCIPMVVIPSTISN---NVPGTEFS 308
RN K QAGIQLV +DYKE + ++ + ++ E S
Sbjct: 58 RNQDNKGLTAQDLQAGIQLV---NDYKEIILSPDILDKVSKDLKLDLSPKELS 107
>gnl|CDD|216844 pfam02011, Glyco_hydro_48, Glycosyl hydrolase family 48. Members
of this family are endoglucanase EC:3.2.1.4 and
exoglucanase EC:3.2.1.91 enzymes that cleave cellulose
or related substrate.
Length = 615
Score = 29.0 bits (65), Expect = 7.0
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 262 GTKQAANTA----------YQ--AGIQLVEARSDYKEFCIPMVVIPSTISNNVP 303
G +A NTA YQ GI E R+DYK F V +PS + +P
Sbjct: 502 GDTEARNTAKELLDRMWANYQDEKGISAPETRADYKRFFDQEVYVPSGWTGTMP 555
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 28.0 bits (63), Expect = 7.3
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 20 GLPKSTG---RLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITV 76
G S G RLA R Q I+++ E + D PIT ++ ++ E LK T I +
Sbjct: 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLD--PITERQLLSLIFEVLKDKTLIWI 153
Query: 77 LGHVQRGGSPSAFDRVL 93
H+ D++L
Sbjct: 154 THHLT---GIEHMDKIL 167
>gnl|CDD|227675 COG5385, COG5385, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 214
Score = 28.3 bits (63), Expect = 7.6
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 38 LNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSPSAFDRVLGCRM 97
LN+ ++A GAI R G + V +EN + D R +++ + P F +
Sbjct: 119 LNLFLIAYGAIPRGGSLV-------VTLENPETDARFSIIAKGRMMRVPPKFLELHSGEP 171
Query: 98 GAEAVMA 104
EAV A
Sbjct: 172 PEEAVDA 178
>gnl|CDD|133121 cd06589, GH31, The enzymes of glycosyl hydrolase family 31 (GH31)
occur in prokaryotes, eukaryotes, and archaea with a
wide range of hydrolytic activities, including
alpha-glucosidase (glucoamylase and sucrase-isomaltase),
alpha-xylosidase, 6-alpha-glucosyltransferase,
3-alpha-isomaltosyltransferase and alpha-1,4-glucan
lyase. All GH31 enzymes cleave a terminal carbohydrate
moiety from a substrate that varies considerably in
size, depending on the enzyme, and may be either a
starch or a glycoprotein. In most cases, the pyranose
moiety recognized in subsite -1 of the substrate binding
site is an alpha-D-glucose, though some GH31 family
members show a preference for alpha-D-xylose. Several
GH31 enzymes can accommodate both glucose and xylose and
different levels of discrimination between the two have
been observed. Most characterized GH31 enzymes are
alpha-glucosidases. In mammals, GH31 members with
alpha-glucosidase activity are implicated in at least
three distinct biological processes. The lysosomal acid
alpha-glucosidase (GAA) is essential for glycogen
degradation and a deficiency or malfunction of this
enzyme causes glycogen storage disease II, also known as
pompe disease. In the endoplasmic reticulum,
alpha-glucosidase II catalyzes the second step in the
N-linked oligosaccharide processing pathway that
constitutes part of the quality control system for
glycoprotein folding and maturation. The intestinal
enzymes sucrase-isomaltase (SI) and maltase-glucoamylase
(MGAM) play key roles in the final stage of carbohydrate
digestion, making alpha-glucosidase inhibitors useful in
the treatment of type 2 diabetes. GH31
alpha-glycosidases are retaining enzymes that cleave
their substrates via an acid/base-catalyzed,
double-displacement mechanism involving a covalent
glycosyl-enzyme intermediate. Two aspartic acid residues
have been identified as the catalytic nucleophile and
the acid/base, respectively.
Length = 265
Score = 28.5 bits (64), Expect = 8.8
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 225 FIYRLYSEEGKGLFSARQNVLGHMQQGGSPSPFDRNMGT 263
+I ++E K L V G G PSP D N+ T
Sbjct: 89 YIREWWAEVVKKLLV-SLGVDGFWTDMGEPSPGDGNIFT 126
>gnl|CDD|233564 TIGR01768, GGGP-family, geranylgeranylglyceryl phosphate synthase
family protein. This model represents a family of
sequences including geranylgeranylglyceryl phosphate
synthase which catalyzes the first committed step in the
synthesis of ether-linked membrane lipids in archaea.
The clade of bacterial sequences may have the same
function or a closely related function. This model
supercedes TIGR00265, which has been retired.
Length = 223
Score = 28.2 bits (63), Expect = 9.2
Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 22/154 (14%)
Query: 276 QLVEARSDYKEFCIPMVVIPSTISNNVPGTEFSLGCDTALNEITEEGYTLAVMHI-GAPA 334
L+EA Y +P+++ PS +N + + LN +++ Y + I AP
Sbjct: 46 TLIEALRRYG---LPIILFPSNPTNVSRDADALF-FPSVLN--SDDPYWIIGAQIEAAPK 99
Query: 335 CGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVA-GNVQIMQWSDVTGWVGQGGAMLGTK- 392
I G ++ G V D+ + MLG
Sbjct: 100 FKK------IGEEIIPEGYIIVN-PGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPI 152
Query: 393 ------RTLPEKKLPQIAAKLKELKIQALLIIGG 420
PE P++ A++K++ +A L +GG
Sbjct: 153 IYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGG 186
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 28.4 bits (64), Expect = 9.3
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 15 CSPLNGLPKSTGRLACERTAGQRLNIIIVAEGAIDR 50
C L GL S GRL + +RL + IVA G + R
Sbjct: 188 CCGLVGLKPSRGRLPLDP-ELRRLPVNIVANGVLTR 222
>gnl|CDD|216402 pfam01268, FTHFS, Formate--tetrahydrofolate ligase.
Length = 557
Score = 28.5 bits (65), Expect = 9.4
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 36 QRLNIIIVAEGAIDRDGKPITAEKVK 61
+RL I+VA RDG+P+TA+ +
Sbjct: 217 ERLGRIVVAY---TRDGEPVTAKDLG 239
>gnl|CDD|235984 PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.
Length = 484
Score = 28.5 bits (64), Expect = 9.5
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 457 LKKCTKPDGSVFTDSPETAVLMGVIRRQYCFTPLQTLKKETN 498
L+K + G++F S +T +LM +IRR + T + LK+ N
Sbjct: 122 LRKELEKQGAIFHSSSDTEILMHLIRRSHNPTFMGKLKEALN 163
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 28.6 bits (64), Expect = 9.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 294 IPSTISNNVPGTEFSLGCDTALNE 317
IP TI N++P + S G DTA+ E
Sbjct: 211 IPKTIDNDIPVIDKSFGFDTAVEE 234
>gnl|CDD|232961 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I.
Prolyl-tRNA synthetase is a class II tRNA synthetase and
is recognized by pfam model tRNA-synt_2b, which
recognizes tRNA synthetases for Gly, His, Ser, and Pro.
The prolyl-tRNA synthetases are divided into two widely
divergent families. This family includes the archaeal
enzyme, the Pro-specific domain of a human
multifunctional tRNA ligase, and the enzyme from the
spirochete Borrelia burgdorferi. The other family
includes enzymes from Escherichia coli, Bacillus
subtilis, Synechocystis PCC6803, and one of the two
prolyL-tRNA synthetases of Saccharomyces cerevisiae
[Protein synthesis, tRNA aminoacylation].
Length = 472
Score = 28.5 bits (64), Expect = 9.5
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 254 PSPFDRNMG-TKQAANTAY----QAGIQLVEARSDYKEF-----CIPMVVIPSTISNNVP 303
PF R T Q A+TA+ +A Q++ A YKEF IP V
Sbjct: 142 TRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKEFIENSLAIPYFVGRKPEWEKFA 201
Query: 304 GTEFSLGCDT 313
G E++ +T
Sbjct: 202 GAEYTWAFET 211
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,840,058
Number of extensions: 2526864
Number of successful extensions: 2253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2215
Number of HSP's successfully gapped: 85
Length of query: 512
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 411
Effective length of database: 6,457,848
Effective search space: 2654175528
Effective search space used: 2654175528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)