RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5984
(512 letters)
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 337 bits (866), Expect = e-106
Identities = 108/321 (33%), Positives = 163/321 (50%), Gaps = 37/321 (11%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSP 86
+ R G+R I+IVAEGAI D PI+ ++VK+V+V L DTR+T LGHVQRGG+
Sbjct: 414 IVGKHRARGKRKTIVIVAEGAISNDLSPISCDQVKDVLVNRLGLDTRVTTLGHVQRGGTA 473
Query: 87 SAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADK 146
AFDR+ G EAV A++E T ++++ +Q R+PL++ VE T+ VAK++ +
Sbjct: 474 VAFDRIYATLQGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSIESR 533
Query: 147 QWDLAVQLRGRQVFPHPSFARNLETYKMLTRLKPPKSAFDEMGRGLEGYTLAVMHIGAPA 206
+ A+ LR F +++ + + R +A++++GAPA
Sbjct: 534 NFKKAISLRD------SEFVEHMKNFISTNSADHVPPSLPLEKR----KKIAIINVGAPA 583
Query: 207 CGMNAAVRSF---CNDNYNTDF-IYRLYS--EEGKGLFS-ARQNVLGHMQQGGS------ 253
GMN+AV S C + + I+ +S + + S ++ G GGS
Sbjct: 584 GGMNSAVYSMATYCMSRGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGSEIGTNR 643
Query: 254 PSPFDRNMGTKQAA--------------NTAYQAGIQLVEARSDYKEFCIPMVVIPSTIS 299
P D ++G A+ + QL AR +Y IP+V+IP+TIS
Sbjct: 644 TLPNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATIS 703
Query: 300 NNVPGTEFSLGCDTALNEITE 320
NNVPGTE+SLG DT LN E
Sbjct: 704 NNVPGTEYSLGSDTCLNSFME 724
Score = 181 bits (461), Expect = 3e-49
Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 40/221 (18%)
Query: 238 FSARQNVLGHMQQGGSPSPFDRNMGTKQAANTAYQAGIQLVEARSDYKEFCI-----PMV 292
R LGH+Q+GG+ FDR T Q A A ++E +D I +
Sbjct: 457 LDTRVTTLGHVQRGGTAVAFDRIYATLQGVE-AVNA---VLECDADTPSPMIAIKEDQIT 512
Query: 293 VIP--------STISNNVPGTEF---------------------SLGCDTALNEITEEGY 323
+P ++ ++ F + + E+
Sbjct: 513 RVPLVDAVELTQQVAKSIESRNFKKAISLRDSEFVEHMKNFISTNSADHVPPSLPLEKRK 572
Query: 324 TLAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAG-NVQIMQWSDVTGWV 382
+A++++GAPA GMN+AV S C+ RG IH+G GL +V+ + W D+ GW
Sbjct: 573 KIAIINVGAPAGGMNSAVYSMATYCMSRGHVPYAIHNGFSGLARHESVRSINWLDIEGWG 632
Query: 383 GQGGAMLGTKRTLPEK-KLPQIAAKLKELKIQALLIIGGFE 422
GG+ +GT RTLP + IA ++ L+++GGFE
Sbjct: 633 SLGGSEIGTNRTLPNDADIGMIAYFFEKYGFDGLILVGGFE 673
Score = 125 bits (316), Expect = 1e-30
Identities = 64/396 (16%), Positives = 125/396 (31%), Gaps = 105/396 (26%)
Query: 133 VEKTKAVAKAMADKQWDLAVQLRGRQVFPHPSFARNLETYKMLTRLKPPKSAFDEMGRGL 192
V + + + + R S + K + + + +
Sbjct: 131 VYTVDPLGSLIGFSGFKNPFAVNER------SLLPKVSEEKAYRAEDDSEKLLNPVRK-- 182
Query: 193 EGYTLAVMHIGAPACGMNAAVRSFC----NDNYNTDFIYRLYSEEGKGLFSA-------- 240
T+ VM G + GMN VR+ I+ Y +GL
Sbjct: 183 ---TIGVMTSGGDSPGMNPFVRAVVRAGIYKGCKVFCIHEGY----EGLVRGGEKYIKET 235
Query: 241 -RQNVLGHMQQGG-------SPSPFDRNMGTKQAANTAYQAGI----------------- 275
+V G + +GG F G +A GI
Sbjct: 236 QWHDVRGWLVEGGTNIGTARCK-EFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADR 294
Query: 276 ---------------QLVEARSDYKEFCIPMVVIPSTISNNVPGTEFSLGCDTALNEITE 320
+ + + + + +I N++ T+ ++G ++L+ I
Sbjct: 295 FRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDATIGAFSSLDRICR 354
Query: 321 EGYTLAVMHIGAPACGMNAAVRSFV-----RNCIYRGD--TVIGIHDGVEGLVA--GNVQ 371
A+ +I A A + R+F+ R+C G + G+ + ++
Sbjct: 355 -----AIDYIDATANSHS---RAFIVEVMGRHC---GWLGLLAGLATSADYILIPEKPAS 403
Query: 372 IMQWSD-VTGWVGQGGAMLGTKRTL--------PEKKLPQIAAKLKELKIQALLIIGGFE 422
+W D + VG+ A G ++T+ P ++K++ + L G +
Sbjct: 404 SREWQDQMCDIVGKHRAR-GKRKTIVIVAEGAISNDLSPISCDQVKDVLVNRL----GLD 458
Query: 423 DEQ---GHMQQGGSPSPFDRNMGTKQAANTVEWMID 455
GH+Q+GG+ FDR T Q V +++
Sbjct: 459 TRVTTLGHVQRGGTAVAFDRIYATLQGVEAVNAVLE 494
Score = 115 bits (289), Expect = 3e-27
Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 28/155 (18%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQ--DTRITVLGHVQRGG 84
A ++ + +I+ +E A K +T E + ++ + D++ + GHVQ+GG
Sbjct: 788 SFANDQGKTKSGRLILKSENA----SKVLTTEVISTIIDDEASGRFDSKTAIPGHVQQGG 843
Query: 85 SPSAFDRVLGCRMGAEAVMALME-----------------ATPGTEPCVMSLDGNQAVRL 127
PS DRV R AV + + V+ + +Q
Sbjct: 844 IPSPMDRVRASRFAIRAVSFIERHSDRCQTFKNSISFRQTDEITSTAVVLGIHKSQLRFT 903
Query: 128 PLMECVEKTKAVAKAMADKQW-----DLAVQLRGR 157
P+ + + V + M + +++ L GR
Sbjct: 904 PIRQLYDFESDVPRRMRKNIFWSNVREISDMLSGR 938
Score = 85.5 bits (212), Expect = 1e-17
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 217 CNDNYNTDFIYRLYSEEGKGLFSARQNVLGHMQQGGSPSPFDRNMGTKQAA 267
+ T+ I + +E G F ++ + GH+QQGG PSP DR ++ A
Sbjct: 808 ASKVLTTEVISTIIDDEASGRFDSKTAIPGHVQQGGIPSPMDRVRASRFAI 858
Score = 78.2 bits (193), Expect = 2e-15
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 426 GHMQQGGSPSPFDRNMGTKQAANTVEWMIDQLKKCTKPDGSVFT----DSPETAVLMGVI 481
GH+QQGG PSP DR ++ A V ++ +C S+ + TAV++G+
Sbjct: 837 GHVQQGGIPSPMDRVRASRFAIRAVSFIERHSDRCQTFKNSISFRQTDEITSTAVVLGIH 896
Query: 482 RRQYCFTPLQTL-KKETNFE 500
+ Q FTP++ L E++
Sbjct: 897 KSQLRFTPIRQLYDFESDVP 916
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 330 bits (848), Expect = e-105
Identities = 116/325 (35%), Positives = 174/325 (53%), Gaps = 45/325 (13%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSP 86
++ R+ G+R I++VAEGAI D PI+ V +V+V+ L DTRIT LGHVQRGG+
Sbjct: 236 IVSKHRSRGKRTTIVVVAEGAIAADLTPISPSDVHKVLVDRLGLDTRITTLGHVQRGGTA 295
Query: 87 SAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADK 146
A+DR+L G EAV A++E+TP T +++++ N+ VR PLME V+ TKAVA+A+ K
Sbjct: 296 VAYDRILATLQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQAK 355
Query: 147 QWDLAVQLRGRQVFPHPSFARNLETYKMLTRLKPPKSAFDEMGRGLEGYTLAVMHIGAPA 206
+ A+ LR F +L + + + + R +A++++GAPA
Sbjct: 356 DFKRAMSLRD------TEFIEHLNNFMAINSADHNEPKLPKDKR----LKIAIVNVGAPA 405
Query: 207 CGMNAAVRSFC----NDNYNTDFIYRLYSEEGKGLFS-------ARQNVLGHMQQGGS-- 253
G+N+AV S + + IY + GL +++LG +GGS
Sbjct: 406 GGINSAVYSMATYCMSQGHRPYAIYNGW----SGLARHESVRSLNWKDMLGWQSRGGSEI 461
Query: 254 ----PSPFDRNMGTKQAA--------------NTAYQAGIQLVEARSDYKEFCIPMVVIP 295
+P + ++G A+++ QL AR Y F IPMV+IP
Sbjct: 462 GTNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIP 521
Query: 296 STISNNVPGTEFSLGCDTALNEITE 320
+T+SNNVPGTE+SLG DTALN + E
Sbjct: 522 ATLSNNVPGTEYSLGSDTALNALME 546
Score = 175 bits (447), Expect = 9e-48
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 40/221 (18%)
Query: 238 FSARQNVLGHMQQGGSPSPFDRNMGTKQAANTAYQAGIQLVEARSDYKEFCIPMV----- 292
R LGH+Q+GG+ +DR + T Q A A ++E+ D I +
Sbjct: 279 LDTRITTLGHVQRGGTAVAYDRILATLQGLE-AVNA---VLESTPDTPSPLIAVNENKIV 334
Query: 293 ------------VIPSTISN-------NVPGTEF----------SLGCDTALNEITEEGY 323
+ I ++ TEF + ++
Sbjct: 335 RKPLMESVKLTKAVAEAIQAKDFKRAMSLRDTEFIEHLNNFMAINSADHNEPKLPKDKRL 394
Query: 324 TLAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAG-NVQIMQWSDVTGWV 382
+A++++GAPA G+N+AV S C+ +G I++G GL +V+ + W D+ GW
Sbjct: 395 KIAIVNVGAPAGGINSAVYSMATYCMSQGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQ 454
Query: 383 GQGGAMLGTKRTLPEK-KLPQIAAKLKELKIQALLIIGGFE 422
+GG+ +GT R PE+ L IA ++ + L+I+GGFE
Sbjct: 455 SRGGSEIGTNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFE 495
Score = 115 bits (291), Expect = 2e-27
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 324 TLAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGN---VQIMQWSDVTG 380
+AVM G A GMN+ VR+ VR+ I++G + +G EGLV G ++ W DV G
Sbjct: 5 AIAVMTSGGDAPGMNSNVRAIVRSAIFKGCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRG 64
Query: 381 WVGQGGAMLGTKRTLPEKKLP---QIAAKLKELKIQALLIIGG 420
W +GG +GT R + KK A L E + AL++ GG
Sbjct: 65 WSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGG 107
Score = 114 bits (288), Expect = 4e-27
Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 30/157 (19%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQ--DTRITVLGHVQRGG 84
G+ +I+ + A K ++A K+ EV+ D + GHVQ+GG
Sbjct: 610 SFEKAEGRGRFGKLILKSTNA----SKALSATKLAEVITAEADGRFDAKPAYPGHVQQGG 665
Query: 85 SPSAFDRVLGCRMGAEAVMALME-------------------ATPGTEPCVMSLDGNQAV 125
PS DR RM +AV + + T V+ + G+ V
Sbjct: 666 LPSPIDRTRATRMAIKAVGFIKDNQAAIAEARAAEENFNADDKTISDTAAVVGVKGSHVV 725
Query: 126 RLPLMECVEKTKAVAKAMADKQW-----DLAVQLRGR 157
+ + + V+ M +A L GR
Sbjct: 726 YNSIRQLYDYETEVSMRMPKVIHWQATRLIADHLVGR 762
Score = 87.3 bits (217), Expect = 3e-18
Identities = 60/328 (18%), Positives = 110/328 (33%), Gaps = 92/328 (28%)
Query: 196 TLAVMHIGAPACGMNAAVRSFC----NDNYNTDFIYRLYSEEGKGLFSA---------RQ 242
+AVM G A GMN+ VR+ + Y +GL +
Sbjct: 5 AIAVMTSGGDAPGMNSNVRAIVRSAIFKGCRAFVVMEGY----EGLVRGGPEYIKEFHWE 60
Query: 243 NVLGHMQQGGS------PSPFDRNMGTKQAANTAYQAGI--------------------- 275
+V G +GG+ F + G A +AG+
Sbjct: 61 DVRGWSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSE 120
Query: 276 -----------QLVEARSDYKEFCIPMVVIPSTISNNVPGTEFSLGCDTALNEITEEGYT 324
+ + + + +I N++ T+ ++G +AL+ I +
Sbjct: 121 WPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICK---- 176
Query: 325 LAVMHIGAPACGMNAAVRSFV-----RNCIYRGD--TVIGIHDGVEGLVA--GNVQIMQW 375
A+ ++ A A N+ R+FV RNC G + GI + + +W
Sbjct: 177 -AIDYVEATA---NSHSRAFVVEVMGRNC---GWLALLAGIATSADYIFIPEKPATSSEW 229
Query: 376 SD-VTGWVGQGGAMLGTKRTL--------PEKKLPQIAAKLKELKIQALLIIGGFEDEQ- 425
D + V + + G + T+ P + + ++ + L G +
Sbjct: 230 QDQMCDIVSKHRSR-GKRTTIVVVAEGAIAADLTPISPSDVHKVLVDRL----GLDTRIT 284
Query: 426 --GHMQQGGSPSPFDRNMGTKQAANTVE 451
GH+Q+GG+ +DR + T Q V
Sbjct: 285 TLGHVQRGGTAVAYDRILATLQGLEAVN 312
Score = 83.5 bits (207), Expect = 5e-17
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 217 CNDNYNTDFIYRLYSEEGKGLFSARQNVLGHMQQGGSPSPFDRNMGTKQAA 267
+ + + + + E G F A+ GH+QQGG PSP DR T+ A
Sbjct: 630 ASKALSATKLAEVITAEADGRFDAKPAYPGHVQQGGLPSPIDRTRATRMAI 680
Score = 75.0 bits (185), Expect = 2e-14
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 426 GHMQQGGSPSPFDRNMGTKQAANTVEWMIDQLK------KCTKPDGSVFTDSPETAVLMG 479
GH+QQGG PSP DR T+ A V ++ D + + +TA ++G
Sbjct: 659 GHVQQGGLPSPIDRTRATRMAIKAVGFIKDNQAAIAEARAAEENFNADDKTISDTAAVVG 718
Query: 480 VIRRQYCFTPLQTL-KKETNFE 500
V + ++ L ET
Sbjct: 719 VKGSHVVYNSIRQLYDYETEVS 740
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 323 bits (830), Expect = e-102
Identities = 103/327 (31%), Positives = 155/327 (47%), Gaps = 51/327 (15%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSP 86
R+ G+R N IIVAEGA+D P+TA VK+ ++E L DT++T+LGHVQRGG+
Sbjct: 237 VCQRHRSKGRRNNTIIVAEGALDDQLNPVTANDVKDALIE-LGLDTKVTILGHVQRGGTA 295
Query: 87 SAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADK 146
A DR L G +AV A++E TP T ++ + N+ +R+PL+E V+ TK+VA A+ +K
Sbjct: 296 VAHDRWLATLQGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIENK 355
Query: 147 QWDLAVQLRGRQVFPHPSFARNLETYKMLTRLKPPKSAFDEMGRGLEGYTLAVMHIGAPA 206
+D A+ LR F E + T R + ++H+GAP+
Sbjct: 356 DFDKAISLRD------TEFIELYENFLSTTVKDDGSELLPVSDR----LNIGIVHVGAPS 405
Query: 207 CGMNAAVRSFC----NDNYNTDFIYRLYSEEGKGLFSARQ-------NVLGHMQQGGS-- 253
+NAA R+ + + I + GL + +V GGS
Sbjct: 406 AALNAATRAATLYCLSHGHKPYAIMNGF----SGLIQTGEVKELSWIDVENWHNLGGSEI 461
Query: 254 ----PSPFDRNMGTKQAANT----------------AYQAGIQLVEARSDYKEFCIPMVV 293
+ A +++ QL + R+ + F IPM +
Sbjct: 462 GTNRSVASE---DLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCL 518
Query: 294 IPSTISNNVPGTEFSLGCDTALNEITE 320
IP+T+SNNVPGTE+SLG DT LN +
Sbjct: 519 IPATVSNNVPGTEYSLGVDTCLNALVN 545
Score = 180 bits (458), Expect = 3e-49
Identities = 57/237 (24%), Positives = 98/237 (41%), Gaps = 31/237 (13%)
Query: 217 CNDNYNTDFIYRLYSEEGKGLFSARQNVLGHMQQGGSPSPFDRNMGTKQAA--------- 267
+D N + + + +LGH+Q+GG+ DR + T Q
Sbjct: 258 LDDQLNPVTANDVKDALIELGLDTKVTILGHVQRGGTAVAHDRWLATLQGVDAVKAVLEF 317
Query: 268 ---NTAYQAGIQ--------LVEARSDYKEFCIPMVVIPSTISNNVPGTEF--------- 307
+ GI LVE+ K + + ++ TEF
Sbjct: 318 TPETPSPLIGILENKIIRMPLVESVKLTKSVATAIENKDFDKAISLRDTEFIELYENFLS 377
Query: 308 -SLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLV 366
++ D + + + ++H+GAP+ +NAA R+ C+ G I +G GL+
Sbjct: 378 TTVKDDGSELLPVSDRLNIGIVHVGAPSAALNAATRAATLYCLSHGHKPYAIMNGFSGLI 437
Query: 367 -AGNVQIMQWSDVTGWVGQGGAMLGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFE 422
G V+ + W DV W GG+ +GT R++ + L IA ++ K+ L+I+GGFE
Sbjct: 438 QTGEVKELSWIDVENWHNLGGSEIGTNRSVASEDLGTIAYYFQKNKLDGLIILGGFE 494
Score = 123 bits (311), Expect = 5e-30
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 319 TEEGYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQI--MQWS 376
+++ +AVM G + GMNAAVR+ VR I+ G V +++G EGL+ G + M W
Sbjct: 2 SQKKKKIAVMTSGGDSPGMNAAVRAVVRTGIHFGCDVFAVYEGYEGLLRGGKYLKKMAWE 61
Query: 377 DVTGWVGQGGAMLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGG 420
DV GW+ +GG ++GT R++ + Q A L I AL++ GG
Sbjct: 62 DVRGWLSEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGG 108
Score = 110 bits (277), Expect = 8e-26
Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 11/139 (7%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSP 86
++ + +++ E A + A+ + E K R + GHVQ+GG P
Sbjct: 609 NFRHDKGENRNGKLLVRNEQASSVYSTQLLADIISEA--SKGKFGVRTAIPGHVQQGGVP 666
Query: 87 SAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADK 146
S+ DRV R + + + + + +R EK V +
Sbjct: 667 SSKDRVTASRFAVKCIKFIEQWNKKN--EASPNTDAKVLRFKFDTHGEKVPTV-----EH 719
Query: 147 QWDLAVQL--RGRQVFPHP 163
+ D A + G V P
Sbjct: 720 EDDSAAVICVNGSHVSFKP 738
Score = 90.1 bits (224), Expect = 4e-19
Identities = 77/373 (20%), Positives = 133/373 (35%), Gaps = 113/373 (30%)
Query: 193 EGYTLAVMHIGAPACGMNAAVRSFC----NDNYNTDFIYRLYSEEGKGLFSA-------- 240
+ +AVM G + GMNAAVR+ + + +Y Y +GL
Sbjct: 4 KKKKIAVMTSGGDSPGMNAAVRAVVRTGIHFGCDVFAVYEGY----EGLLRGGKYLKKMA 59
Query: 241 RQNVLGHMQQGGS------PSPFDRNMGTKQAANTAYQAGIQ-LV--------------- 278
++V G + +GG+ F + G +QAA GI LV
Sbjct: 60 WEDVRGWLSEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFR 119
Query: 279 -EARSDYKEFC---------------IPMVVIPSTISNNVPGTEFSLGCDTALNEITEEG 322
E S E + +V + +I N++ GT+ ++G +AL I E
Sbjct: 120 HEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICE-- 177
Query: 323 YTLAVMHIGAPACGMNAAVRSFV-----RNCIYRGD--TVIGIHDGVEGLVA--GNVQIM 373
V +I A A + R+FV R+C G + GI G + + V
Sbjct: 178 ---MVDYIDATAKSHS---RAFVVEVMGRHC---GWLALMAGIATGADYIFIPERAVPHG 228
Query: 374 QWSD-VTGWVGQG--------------GAMLGTKRTLPEKKLPQIAAKLK-ELKIQALLI 417
+W D + + GA+ + + +L + K+ L
Sbjct: 229 KWQDELKEVCQRHRSKGRRNNTIIVAEGALDDQLNPVTANDVKDALIELGLDTKVTIL-- 286
Query: 418 IGGFEDEQGHMQQGGSPSPFDRNMGTKQAANTVEWMIDQLKKCTKPDGSVFTDSPETAVL 477
GH+Q+GG+ DR + T Q + V+ +++ P+ + L
Sbjct: 287 --------GHVQRGGTAVAHDRWLATLQGVDAVKAVLE-----FTPE--------TPSPL 325
Query: 478 MGVIRRQYCFTPL 490
+G++ + PL
Sbjct: 326 IGILENKIIRMPL 338
Score = 83.9 bits (208), Expect = 3e-17
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 217 CNDNYNTDFIYRLYSEEGKGLFSARQNVLGHMQQGGSPSPFDRNMGTKQAA 267
+ Y+T + + SE KG F R + GH+QQGG PS DR ++ A
Sbjct: 629 ASSVYSTQLLADIISEASKGKFGVRTAIPGHVQQGGVPSSKDRVTASRFAV 679
Score = 74.7 bits (184), Expect = 2e-14
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 18/94 (19%)
Query: 426 GHMQQGGSPSPFDRNMGTKQAANTVEWMIDQLKKC-----------------TKPDGSVF 468
GH+QQGG PS DR ++ A ++++ KK
Sbjct: 658 GHVQQGGVPSSKDRVTASRFAVKCIKFIEQWNKKNEASPNTDAKVLRFKFDTHGEKVPTV 717
Query: 469 TDSPETAVLMGVIRRQYCFTPLQTL-KKETNFEC 501
++A ++ V F P+ L + ETN E
Sbjct: 718 EHEDDSAAVICVNGSHVSFKPIANLWENETNVEL 751
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 327 bits (840), Expect = e-102
Identities = 112/323 (34%), Positives = 157/323 (48%), Gaps = 43/323 (13%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSP 86
R G+R +IVAEGAID PIT+E+VK+V+ + DTRIT LGHVQRGG+P
Sbjct: 442 VCLRHREKGRRKTTVIVAEGAIDDQLNPITSEEVKDVL-VEIGLDTRITRLGHVQRGGAP 500
Query: 87 SAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADK 146
AFDR L G +AV A++E+TP V+S+ N+ VR PL+E V +TK V+ A+ K
Sbjct: 501 CAFDRFLATVQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIEAK 560
Query: 147 QWDLAVQLRGRQVFPHPSFARNLETYKMLTRLKPPKSAFDEMGRGLEGYTLAVMHIGAPA 206
+D A+QLR + FA + E + +++ E R +A++H+GAP
Sbjct: 561 DFDKALQLRDQ------EFATSYENFLSVSKYDDGSYLVPESSR----LNIAIIHVGAPT 610
Query: 207 CGMNAAVRSFC----NDNYNTDFIYRLYS---EEGKGLFSARQNVLGHMQQGGS------ 253
+N A R + I ++ G +V GGS
Sbjct: 611 SALNPATRVATLNSLAKGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGSEIGTNR 670
Query: 254 PSPFDRNMGTKQAANT----------------AYQAGIQLVEARSDYKEFCIPMVVIPST 297
P D A A+ A +L AR+ Y F IPM +P+T
Sbjct: 671 SLPSD---DMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPAT 727
Query: 298 ISNNVPGTEFSLGCDTALNEITE 320
+SNNVPGTE+SLG DT LN ++
Sbjct: 728 VSNNVPGTEYSLGSDTCLNTLSG 750
Score = 181 bits (460), Expect = 3e-49
Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 31/216 (14%)
Query: 238 FSARQNVLGHMQQGGSPSPFDRNMGTKQAA------------NTAYQAGIQ--------L 277
R LGH+Q+GG+P FDR + T Q + I L
Sbjct: 484 LDTRITRLGHVQRGGAPCAFDRFLATVQGVDAVRAVLESTPAIPSPVISILENKIVRQPL 543
Query: 278 VEARSDYKEFCIPMVVIPSTISNNVPGTEFSLGCDT--ALNEI--------TEEGYTLAV 327
VE+ + K + + + EF+ + ++++ +A+
Sbjct: 544 VESVAQTKTVSAAIEAKDFDKALQLRDQEFATSYENFLSVSKYDDGSYLVPESSRLNIAI 603
Query: 328 MHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVA-GNVQIMQWSDVTGWVGQGG 386
+H+GAP +N A R N + +G V I +G GL+ G V+ + W DV W GG
Sbjct: 604 IHVGAPTSALNPATRVATLNSLAKGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGG 663
Query: 387 AMLGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFE 422
+ +GT R+LP + +A ++ K L+IIGGFE
Sbjct: 664 SEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFE 699
Score = 121 bits (304), Expect = 4e-29
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 319 TEEGYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQI--MQWS 376
E +A++ G A GMNAAVR+ R I+ G V ++G GLV G + +QW
Sbjct: 207 EEGKKKIAIITSGGDAPGMNAAVRAVTRAGIFYGCKVYACYEGYTGLVKGGDMLKELQWQ 266
Query: 377 DVTGWVGQGGAMLGTKRTLPEKKLP---QIAAKLKELKIQALLIIGG 420
DV G + GG ++GT R ++ Q + I AL++ GG
Sbjct: 267 DVRGLLSIGGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGG 313
Score = 105 bits (264), Expect = 4e-24
Identities = 69/428 (16%), Positives = 126/428 (29%), Gaps = 121/428 (28%)
Query: 100 EAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADKQWDLAVQLRGRQV 159
+ + A + + R P+ + + + +
Sbjct: 135 DKLKAKLIEIGAEIIPSKIDLVEFSTRDPMGDVISFSSYPSLNSK--------------- 179
Query: 160 FPHPSFARNLETYKMLTRLKPPKSAFDEMGRGLEGYTLAVMHIGAPACGMNAAVRSFC-- 217
++ +S +++ +A++ G A GMNAAVR+
Sbjct: 180 ----KITSPDFFLHPKKEVRSEESIVEQVKSEEGKKKIAIITSGGDAPGMNAAVRAVTRA 235
Query: 218 --NDNYNTDFIYRLYSEEGKGLFSA--------RQNVLGHMQQGG-------SPSPFDRN 260
Y Y GL Q+V G + GG F
Sbjct: 236 GIFYGCKVYACYEGY----TGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCK-EFRER 290
Query: 261 MGTKQAANTAYQAGI--------------------------------QLVEARSDYKEFC 288
G QA GI +
Sbjct: 291 WGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRN 350
Query: 289 IPMVVIPSTISNNVPGTEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFV--- 345
+ +V + +I N++ GT+ ++G ++L I E V +I A A + R+FV
Sbjct: 351 LTIVGLVGSIDNDMCGTDSTIGAYSSLERIIE-----LVDYIDATAASHS---RAFVVEV 402
Query: 346 --RNCIYRGD--TVIGIHDGVEGLVA--GNVQIMQWSD-VTGWVGQG------------- 385
R+C G + GI G + + W D + +
Sbjct: 403 MGRHC---GWLGLMSGIATGADYIFIPERPPSESNWKDDLKKVCLRHREKGRRKTTVIVA 459
Query: 386 -GAMLGTKRTLPEKKLPQIAAKLK-ELKIQALLIIGGFEDEQGHMQQGGSPSPFDRNMGT 443
GA+ + +++ + ++ + +I L GH+Q+GG+P FDR + T
Sbjct: 460 EGAIDDQLNPITSEEVKDVLVEIGLDTRITRL----------GHVQRGGAPCAFDRFLAT 509
Query: 444 KQAANTVE 451
Q + V
Sbjct: 510 VQGVDAVR 517
Score = 104 bits (262), Expect = 6e-24
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQ--DTRITVLGHVQRGG 84
+ + I I E A K T + + ++ E K ++R V GHVQ+G
Sbjct: 814 TYEEDDGKNRSGKIFIHNEKA----SKVYTTDLIAAIIGEAGKGRFESRTAVPGHVQQGK 869
Query: 85 SPSAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKA-M 143
SPS+ DRV CR+ + + +A + + +R + V+ + K+ +
Sbjct: 870 SPSSIDRVNACRLAIKCCNFIEDANFQVKHNANLSADERHLRFFYDDGVKTSAVSGKSSV 929
Query: 144 ADKQWDLAVQLRGRQVFPHP 163
D + + ++G +V P
Sbjct: 930 IDDNTSVVIGIQGSEVTFTP 949
Score = 85.3 bits (211), Expect = 2e-17
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 217 CNDNYNTDFIYRLYSEEGKGLFSARQNVLGHMQQGGSPSPFDRNMGTKQAA 267
+ Y TD I + E GKG F +R V GH+QQG SPS DR + A
Sbjct: 834 ASKVYTTDLIAAIIGEAGKGRFESRTAVPGHVQQGKSPSSIDRVNACRLAI 884
Score = 76.4 bits (188), Expect = 9e-15
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 24/99 (24%)
Query: 426 GHMQQGGSPSPFDRNMGTKQAANTVEWMID-----------------------QLKKCTK 462
GH+QQG SPS DR + A ++ D K +
Sbjct: 863 GHVQQGKSPSSIDRVNACRLAIKCCNFIEDANFQVKHNANLSADERHLRFFYDDGVKTSA 922
Query: 463 PDGSVFTDSPETAVLMGVIRRQYCFTPLQTL-KKETNFE 500
G T+V++G+ + FTP++ L + ET+ +
Sbjct: 923 VSGKSSVIDDNTSVVIGIQGSEVTFTPVKQLWENETHHK 961
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 315 bits (808), Expect = 3e-99
Identities = 158/323 (48%), Positives = 195/323 (60%), Gaps = 46/323 (14%)
Query: 27 RLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSP 86
RL+ RT G RLNIIIVAEGAIDR+GKPIT+E VK++VV L DTR+TVLGHVQRGG+P
Sbjct: 246 RLSETRTRGSRLNIIIVAEGAIDRNGKPITSEGVKDLVVRRLGYDTRVTVLGHVQRGGTP 305
Query: 87 SAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADK 146
SAFDR+LG RMG EAVMAL+E TP T CV+SL GNQAVRLPLMECV+ TK V KAM +K
Sbjct: 306 SAFDRILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMDEK 365
Query: 147 QWDLAVQLRGRQVFPHPSFARNLETYKMLTRLKPPKSAFDEMGRGLEGYTLAVMHIGAPA 206
++D A++LRGR F N E YK+L ++PP YT+AVM++GAPA
Sbjct: 366 RFDEAMKLRGRS------FMNNWEVYKLLAHIRPPAPK-------SGSYTVAVMNVGAPA 412
Query: 207 CGMNAAVRSF---CNDNYNTDF-IYRLYSEEGKGLFS------ARQNVLGHMQQGGS--- 253
GMNAAVRS N ++ + +G V G QGGS
Sbjct: 413 AGMNAAVRSTVRIGLIQGNRVLVVHDGF----EGPAKGQIEEAGWSYVGGWTGQGGSKLG 468
Query: 254 PSPFDRNMGTKQAANT----------------AYQAGIQLVEARSDYKEFCIPMVVIPST 297
+Q + AY G++L+E R + E CIP VVIP+T
Sbjct: 469 SKRTLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPAT 528
Query: 298 ISNNVPGTEFSLGCDTALNEITE 320
+SNNVPG++FS+G DTALN I
Sbjct: 529 VSNNVPGSDFSVGADTALNTICT 551
Score = 184 bits (468), Expect = 1e-50
Identities = 77/212 (36%), Positives = 107/212 (50%), Gaps = 27/212 (12%)
Query: 238 FSARQNVLGHMQQGGSPSPFDRNMGTKQAA------------NTAYQAGIQ--------L 277
+ R VLGH+Q+GG+PS FDR +G++ A + L
Sbjct: 289 YDTRVTVLGHVQRGGTPSAFDRILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPL 348
Query: 278 VEARSDYKEFCIPMVVIPSTISNNVPGTE-------FSLGCDTALNEITEEGYTLAVMHI 330
+E K+ M + + G + L YT+AVM++
Sbjct: 349 MECVQVTKDVTKAMDEKRFDEAMKLRGRSFMNNWEVYKLLAHIRPPAPKSGSYTVAVMNV 408
Query: 331 GAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQGGAMLG 390
GAPA GMNAAVRS VR + +G+ V+ +HDG EG G ++ WS V GW GQGG+ LG
Sbjct: 409 GAPAAGMNAAVRSTVRIGLIQGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGSKLG 468
Query: 391 TKRTLPEKKLPQIAAKLKELKIQALLIIGGFE 422
+KRTLP+K QI+A + + IQ L+IIGGFE
Sbjct: 469 SKRTLPKKSFEQISANITKFNIQGLVIIGGFE 500
Score = 120 bits (302), Expect = 6e-29
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 322 GYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQI--MQWSDVT 379
G +AV+ G A GMNAAVR+ VR I+ G V +H+G +GLV G I W V+
Sbjct: 15 GKAIAVLTSGGDAQGMNAAVRAVVRVGIFTGARVFFVHEGYQGLVDGGDHIREATWESVS 74
Query: 380 GWVGQGGAMLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGG 420
+ GG ++G+ R + + A L + I L +IGG
Sbjct: 75 MMLQLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGG 118
Score = 112 bits (283), Expect = 2e-26
Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 15/146 (10%)
Query: 17 PLNGLPKSTGRLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITV 76
+ L + L + + +++ E + E D+R V
Sbjct: 601 TIRDLQANVEHLVQKMKTTVKRGLVLRNEKCNENYTTDFIFNLYSEE--GKGIFDSRKNV 658
Query: 77 LGHVQRGGSPSAFDRVLGCRMGAEAVMALME------------ATPGTEPCVMSLDGNQA 124
LGH+Q+GGSP+ FDR +MGA+A+ + A CV+ +
Sbjct: 659 LGHMQQGGSPTPFDRNFATKMGAKAMNWMAGKIKESYRNGRIFANTPDSGCVLGMRKRAL 718
Query: 125 VRLPLMECVEKTKAVAKAMADKQWDL 150
V P+ E +T + +QW L
Sbjct: 719 VFQPVTELQNQTD-FEHRIPKEQWWL 743
Score = 91.3 bits (227), Expect = 2e-19
Identities = 70/341 (20%), Positives = 119/341 (34%), Gaps = 93/341 (27%)
Query: 181 PKSAFDEMGRGLEGYTLAVMHIGAPACGMNAAVRSFC----NDNYNTDFIYRLYSEEGKG 236
A +G G +AV+ G A GMNAAVR+ F++ Y +G
Sbjct: 5 EHHAARTLGVG---KAIAVLTSGGDAQGMNAAVRAVVRVGIFTGARVFFVHEGY----QG 57
Query: 237 LFSARQN--------VLGHMQQGGS------PSPFDRNMGTKQAANTAYQAGI------- 275
L + V +Q GG+ F G +AA+ + GI
Sbjct: 58 LVDGGDHIREATWESVSMMLQLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIG 117
Query: 276 -------------------------QLVEARSDYKEFCIPMVVIPSTISNNVPGTEFSLG 310
+ A + + +V + +I N+ GT+ ++G
Sbjct: 118 GDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIG 177
Query: 311 CDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFV-----RNCIYRGD--TVIGIHDGVE 363
D+AL+ ITE V I A R+FV R+C G V + G +
Sbjct: 178 TDSALHRITE-----IVDAITTTAQSHQ---RTFVLEVMGRHC---GYLALVTSLSCGAD 226
Query: 364 GLVA--GNVQIMQWSDVTGWVGQGGAMLGTKRTL--------PEKKLPQIAAKLKELKIQ 413
+ + + + G++ + P + +K+L ++
Sbjct: 227 WVFIPECPPDDNWEDHLCRRLSETRTR-GSRLNIIIVAEGAIDRNGKPITSEGVKDLVVR 285
Query: 414 ALLIIGGFEDEQ---GHMQQGGSPSPFDRNMGTKQAANTVE 451
L G++ GH+Q+GG+PS FDR +G++ V
Sbjct: 286 RL----GYDTRVTVLGHVQRGGTPSAFDRILGSRMGVEAVM 322
Score = 85.1 bits (211), Expect = 1e-17
Identities = 38/51 (74%), Positives = 44/51 (86%)
Query: 217 CNDNYNTDFIYRLYSEEGKGLFSARQNVLGHMQQGGSPSPFDRNMGTKQAA 267
CN+NY TDFI+ LYSEEGKG+F +R+NVLGHMQQGGSP+PFDRN TK A
Sbjct: 631 CNENYTTDFIFNLYSEEGKGIFDSRKNVLGHMQQGGSPTPFDRNFATKMGA 681
Score = 82.0 bits (203), Expect = 1e-16
Identities = 31/75 (41%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 426 GHMQQGGSPSPFDRNMGTKQAANTVEWMIDQLKKCTKPDGSVFTDSPETAVLMGVIRRQY 485
GHMQQGGSP+PFDRN TK A + WM ++K+ + +G +F ++P++ ++G+ +R
Sbjct: 660 GHMQQGGSPTPFDRNFATKMGAKAMNWMAGKIKESYR-NGRIFANTPDSGCVLGMRKRAL 718
Query: 486 CFTPLQTLKKETNFE 500
F P+ L+ +T+FE
Sbjct: 719 VFQPVTELQNQTDFE 733
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 144 bits (366), Expect = 2e-39
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 32 RTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSPSAFDR 91
G++ +IIIVAEG + + + E +TR++VLGH+QRGGSPSA DR
Sbjct: 209 HERGKKHSIIIVAEGVGS-------GVEFGKRIEEETNLETRVSVLGHIQRGGSPSAADR 261
Query: 92 VLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADKQWDLA 151
VL R+GA AV L+E G + + N+ V ++E +E V + M +L+
Sbjct: 262 VLASRLGAYAVELLLEGKGG---RCVGIQNNKLVDHDIIEILETKHTVEQNMYQLSKELS 318
Query: 152 V 152
+
Sbjct: 319 I 319
Score = 96.4 bits (241), Expect = 3e-22
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 334 ACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQGGAMLGTKR 393
+ GMNAAVR+ VR IY V GI++G GL++G ++ ++ V + +GG L T R
Sbjct: 13 SPGMNAAVRAVVRKAIYHDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGTKLYTAR 72
Query: 394 TLP---EKKLPQIAAKLKELKIQALLIIGG 420
+ + A LK+L I+ L++IGG
Sbjct: 73 CPEFKTVEGREKGIANLKKLGIEGLVVIGG 102
Score = 59.8 bits (146), Expect = 6e-10
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 31/141 (21%)
Query: 206 ACGMNAAVRSFC----NDNYNTDFIYRLYSEEGKGLFSA------RQNVLGHMQQGG--- 252
+ GMNAAVR+ + IY Y GL S +V + +GG
Sbjct: 13 SPGMNAAVRAVVRKAIYHDVEVYGIYNGY----AGLISGKIEKLELGSVGDIIHRGGTKL 68
Query: 253 ----SPSPFDRNMGTKQAANTAYQAGIQ-LV--------EARSDYKEFCIPMVVIPSTIS 299
P F G ++ + GI+ LV E P V +P TI
Sbjct: 69 YTARCP-EFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEHGFPCVGVPGTID 127
Query: 300 NNVPGTEFSLGCDTALNEITE 320
N++PGT+F++G DTALN + +
Sbjct: 128 NDIPGTDFTIGFDTALNTVID 148
Score = 47.0 bits (113), Expect = 7e-06
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 238 FSARQNVLGHMQQGGSPSPFDRNMGTK 264
R +VLGH+Q+GGSPS DR + ++
Sbjct: 240 LETRVSVLGHIQRGGSPSAADRVLASR 266
Score = 41.3 bits (98), Expect = 5e-04
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 426 GHMQQGGSPSPFDRNMGTKQAANTVE 451
GH+Q+GGSPS DR + ++ A VE
Sbjct: 248 GHIQRGGSPSAADRVLASRLGAYAVE 273
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 138 bits (351), Expect = 3e-37
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 32 RTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSPSAFDR 91
+ +G+ +++VAEG + A++ + + D R VLGH+QRGG+P+ DR
Sbjct: 209 QESGKDHGLVVVAEGVMT-------ADQFMAELKKYGDFDVRANVLGHMQRGGTPTVSDR 261
Query: 92 VLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADKQWDLA 151
VL ++G+EAV L+E G + ++ + +++ +++ + DL+
Sbjct: 262 VLASKLGSEAVHLLLEGKGG---LAVGIENGKVTSHDILDLFDESHRGDYDLLKLNADLS 318
Score = 99.4 bits (249), Expect = 3e-23
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 334 ACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQGGAMLGTKR 393
A GMNAAVR+ R I G V GI G GLVAG++ ++ DV + G L + R
Sbjct: 13 APGMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSAR 72
Query: 394 TLP---EKKLPQIAAKLKELKIQALLIIGG 420
E+ +LK+ I A+++IGG
Sbjct: 73 YPEFAEEEGQLAGIEQLKKHGIDAVVVIGG 102
Score = 59.4 bits (145), Expect = 6e-10
Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 31/141 (21%)
Query: 206 ACGMNAAVRSFC----NDNYNTDFIYRLYSEEGKGLFSA------RQNVLGHMQQGG--- 252
A GMNAAVR+ + I + GL + ++V + G
Sbjct: 13 APGMNAAVRAVTRVAIANGLEVFGIRYGF----AGLVAGDIFPLESEDVAHLINVSGTFL 68
Query: 253 ----SPSPFDRNMGTKQAANTAYQAGIQ-LV--------EARSDYKEFCIPMVVIPSTIS 299
P F G + GI +V + +P TI
Sbjct: 69 YSARYP-EFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRHGFNSIGLPGTID 127
Query: 300 NNVPGTEFSLGCDTALNEITE 320
N++P T+ ++G DTA +
Sbjct: 128 NDIPYTDATIGYDTACMTAMD 148
Score = 46.7 bits (112), Expect = 8e-06
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 238 FSARQNVLGHMQQGGSPSPFDRNMGTK 264
F R NVLGHMQ+GG+P+ DR + +K
Sbjct: 240 FDVRANVLGHMQRGGTPTVSDRVLASK 266
Score = 42.0 bits (100), Expect = 3e-04
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 426 GHMQQGGSPSPFDRNMGTKQAANTVE 451
GHMQ+GG+P+ DR + +K + V
Sbjct: 248 GHMQRGGTPTVSDRVLASKLGSEAVH 273
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 129 bits (327), Expect = 6e-34
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 32 RTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSPSAFDR 91
G++ I+ + E D +++ + + ++TR TVLGH+QRGGSP +DR
Sbjct: 210 IAKGKKHAIVAITEHMCD-------VDELAHFIEKETGRETRATVLGHIQRGGSPVPYDR 262
Query: 92 VLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADKQWDLA 151
+L RMGA A+ L+ G + + Q V +++ +E K K D A
Sbjct: 263 ILASRMGAYAIDLLLAGYGG---RCVGIQNEQLVHHDIIDAIENMKRPFK---GDWLDCA 316
Query: 152 VQL 154
+L
Sbjct: 317 KKL 319
Score = 98.3 bits (246), Expect = 6e-23
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 334 ACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQGGAMLGTKR 393
A GMNAA+R VR+ + G V+GI+DG GL + + V+ + +GG LG+ R
Sbjct: 14 APGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSAR 73
Query: 394 TLP---EKKLPQIAAKLKELKIQALLIIGG 420
E LK+ I AL++IGG
Sbjct: 74 FPEFRDENIRAVAIENLKKRGIDALVVIGG 103
Score = 59.8 bits (146), Expect = 6e-10
Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 31/141 (21%)
Query: 206 ACGMNAAVRSFC----NDNYNTDFIYRLYSEEGKGLFSA------RQNVLGHMQQGG--- 252
A GMNAA+R + IY Y GL+ R +V + +GG
Sbjct: 14 APGMNAAIRGVVRSALTEGLEVMGIYDGY----LGLYEDRMVQLDRYSVSDMINRGGTFL 69
Query: 253 ----SPSPFDRNMGTKQAANTAYQAGIQ-LV--------EARSDYKEFCIPMVVIPSTIS 299
P F A + GI LV E P + +P TI
Sbjct: 70 GSARFP-EFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIGLPGTID 128
Query: 300 NNVPGTEFSLGCDTALNEITE 320
N++ GT++++G TAL+ + E
Sbjct: 129 NDIKGTDYTIGFFTALSTVVE 149
Score = 47.1 bits (113), Expect = 7e-06
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 238 FSARQNVLGHMQQGGSPSPFDRNMGTK 264
R VLGH+Q+GGSP P+DR + ++
Sbjct: 241 RETRATVLGHIQRGGSPVPYDRILASR 267
Score = 41.7 bits (99), Expect = 4e-04
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 426 GHMQQGGSPSPFDRNMGTKQAANTVE 451
GH+Q+GGSP P+DR + ++ A ++
Sbjct: 249 GHIQRGGSPVPYDRILASRMGAYAID 274
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 97.5 bits (243), Expect = 7e-22
Identities = 32/179 (17%), Positives = 56/179 (31%), Gaps = 36/179 (20%)
Query: 31 ERTAGQRLNIIIVAEGAIDRDGKPIT-----------------AEKVKEVVVENLKQ--- 70
R R +IIVAEG G+ EKVK + N +
Sbjct: 311 RRFCHSRSCVIIVAEGFGQDWGRGSGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPD 370
Query: 71 -DTRITVLGHVQRGGSPSAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPL 129
+ ++ R PSA D + + AV M G C++++ N + +P+
Sbjct: 371 STVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATG---CIIAMRHNNYILVPI 427
Query: 130 MECVEKTKAVAKAMADKQWDLA----------VQLRGRQVFPHPSFARNLETYKMLTRL 178
+ + + + W V+L + A N ++ L
Sbjct: 428 KVATSVRRVL--DLRGQLWRQVREITVDLGSDVRLARKLEIRRELEAINRNRDRLHEEL 484
Score = 77.1 bits (190), Expect = 3e-15
Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 326 AVMHIG-------APACGMNAAVRSFVRNCI--YRGDTVIGIHDGVEGLVAGNVQI---M 373
IG P G+N +RS I Y VIG G GL Q +
Sbjct: 96 TETTIGIVTCGGICP--GLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIEL 153
Query: 374 QWSDVTGWVGQGGAMLGTKRTLPEKKLPQIAAKLKELKIQALLIIGG 420
VT GG +LG+ R + ++ L+ L + L +GG
Sbjct: 154 HRGRVTNIHHYGGTILGSSRG--PQDPKEMVDTLERLGVNILFTVGG 198
Score = 51.6 bits (124), Expect = 4e-07
Identities = 32/161 (19%), Positives = 52/161 (32%), Gaps = 44/161 (27%)
Query: 198 AVMHIG-------APACGMNAAVRSF---CNDNYNTDFI------YR-LYSEEGKGLFS- 239
IG P G+N +RS + YN + Y L + +
Sbjct: 96 TETTIGIVTCGGICP--GLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIEL 153
Query: 240 ARQNVLGHMQQGG-----SPSPFDRNMGTKQAANTAYQAGI-QLV---------EARSDY 284
R V GG S P D K+ +T + G+ L A
Sbjct: 154 HRGRVTNIHHYGGTILGSSRGPQDP----KEMVDTLERLGVNILFTVGGDGTQRGALVIS 209
Query: 285 KEFC-----IPMVVIPSTISNNVPGTEFSLGCDTALNEITE 320
+E I + +P TI N++ + + G TA+ + +
Sbjct: 210 QEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQ 250
Score = 40.5 bits (95), Expect = 0.001
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 244 VLGHMQQGGSPSPFDRNMGTKQAAN 268
+M + PS D A
Sbjct: 377 DPSYMIRACPPSANDALFCATLATL 401
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 82.6 bits (204), Expect = 6e-17
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 5/100 (5%)
Query: 326 AVMHIGAPACGMNAAVRSFVRNC--IYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVG 383
++ G PA G + + + G G GL+ + + S + +
Sbjct: 76 GIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRN 135
Query: 384 QGGAMLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGG 420
GG + + E+ + KE + A++IIGG
Sbjct: 136 TGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGG 175
Score = 50.3 bits (120), Expect = 1e-06
Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 39/158 (24%)
Query: 198 AVMHIGAPACGMNAA----VRSFCNDNYNTDF--IYRLYSEEGKGLFSAR------QNVL 245
++ G PA G + + N N+ GL +
Sbjct: 76 GIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGP----LGLLENDKIELTESLIN 131
Query: 246 GHMQQGG------SPSPFDRNMGTKQAANTAYQAGI-QLV---------EARSDYKEFC- 288
+ GG + + +A A + + ++ A + F
Sbjct: 132 SYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKK 191
Query: 289 ----IPMVVIPSTISNNVPG--TEFSLGCDTALNEITE 320
I ++ +P TI ++ E S G D+A +E
Sbjct: 192 NGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSE 229
Score = 47.9 bits (114), Expect = 5e-06
Identities = 10/50 (20%), Positives = 17/50 (34%)
Query: 58 EKVKEVVVENLKQDTRITVLGHVQRGGSPSAFDRVLGCRMGAEAVMALME 107
+K+ G+ R PS FD +G AV+ ++
Sbjct: 407 NDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILN 456
Score = 37.2 bits (86), Expect = 0.012
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 235 KGLFSARQNVLGHMQQGGSPSPFDRNMGT 263
KG F+ + G+ + PS FD +
Sbjct: 416 KGSFTPVDHFFGYEGRSAFPSNFDSDYCY 444
Score = 31.4 bits (71), Expect = 0.73
Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 5/100 (5%)
Query: 32 RTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQRGGSPSAFDR 91
G ++IV EG I + P + E+ D + F
Sbjct: 299 SLNGDNFGVVIVPEGLI--EFIPEVKSLMLEL---CDIFDKNEGEFKGLNIEKMKEIFVA 353
Query: 92 VLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLME 131
L M + + ++ D + + +
Sbjct: 354 KLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVP 393
Score = 31.0 bits (70), Expect = 1.1
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 397 EKKLPQ-IAAKLKELKIQALLIIGGFEDEQ---GHMQQGGSPSPFDRNMGT 443
EK + I ++L ++K + G F G+ + PS FD +
Sbjct: 395 EKLFIEMIQSRLNDMKKRGEYK-GSFTPVDHFFGYEGRSAFPSNFDSDYCY 444
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 77.5 bits (191), Expect = 2e-15
Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 18/96 (18%)
Query: 30 CERTAGQRLNIIIVAEGAIDRDGKPI----------------TAEKVKEVVVENLKQDTR 73
++V+EG DGK + A V +V E L
Sbjct: 232 DSCVKKFGYCSVVVSEGVKGDDGKFLSDQGVRDAFGHAQLGGVAPVVASMVKEGLGLKYH 291
Query: 74 ITVLGHVQRGGS--PSAFDRVLGCRMGAEAVMALME 107
V ++QR S D MG AV ++
Sbjct: 292 WGVADYLQRAARHIASKTDVEQAYAMGQAAVEFAVQ 327
Score = 67.8 bits (166), Expect = 2e-12
Identities = 12/108 (11%), Positives = 29/108 (26%), Gaps = 12/108 (11%)
Query: 325 LAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAG------NVQIMQWSDV 378
G +NA+ + + + I+ G G++ + + +
Sbjct: 6 AFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAI 65
Query: 379 TGWVGQGGAMLGTKRT------LPEKKLPQIAAKLKELKIQALLIIGG 420
+ G+ R ++ ++ K I GG
Sbjct: 66 SALRYTPSGAFGSCRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGG 113
Score = 46.6 bits (111), Expect = 1e-05
Identities = 34/215 (15%), Positives = 69/215 (32%), Gaps = 35/215 (16%)
Query: 272 QAGIQLVEARSDYKEFCIPMVVIPSTISNNVPGTEFSLGCDTALN-------EITEEGYT 324
V S + I + +P T+ N++P T+ G + E + + +
Sbjct: 117 ADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVAS 176
Query: 325 LA----------VM--HIG--APACGMNAAVRSFVRNCIY---RGDTVIGIHDGVEGLVA 367
++ VM H G A A G+ ++ + I V+ V
Sbjct: 177 MSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQKFLAKVDSCVK 236
Query: 368 --GNVQIMQWSDVTGWVGQGGAMLGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFE--- 422
G ++ V G G+ + G + +L +A + + ++ L G +
Sbjct: 237 KFGYCSVVVSEGVKGDDGKFLSDQGVRDAFGHAQLGGVAPVVASM-VKEGL---GLKYHW 292
Query: 423 DEQGHMQQGGS--PSPFDRNMGTKQAANTVEWMID 455
++Q+ S D VE+ +
Sbjct: 293 GVADYLQRAARHIASKTDVEQAYAMGQAAVEFAVQ 327
Score = 33.5 bits (77), Expect = 0.16
Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 10/43 (23%)
Query: 240 ARQNVLGHMQQGGS--PSPFDRNMGTKQAANTAYQAGIQLVEA 280
V ++Q+ S D AY G VE
Sbjct: 290 YHWGVADYLQRAARHIASKTDVEQ--------AYAMGQAAVEF 324
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 7e-05
Identities = 67/391 (17%), Positives = 112/391 (28%), Gaps = 151/391 (38%)
Query: 91 RVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKAMADKQWD- 149
++LG G L G Q + + AVA A D W+
Sbjct: 254 KLLGFTPGE-----LRSYLKGATGHS------QGL---VT-------AVAIAETD-SWES 291
Query: 150 ------LAVQ------LRGRQVFPHPSFARNLETYKMLTRLKPPKSAFD--EMGRGLEGY 195
A+ +R + +P+ S PP D E G+
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSL--------------PPSILEDSLENNEGVPSP 337
Query: 196 TLAVMHIGAPACGMNAAVRSFCNDNYNTDFIYRLYSEEGK----GLF-SARQNVLGHMQQ 250
L++ + V N+ + GK L A+ V+
Sbjct: 338 MLSI--SNLTQEQVQDYVNKT-----NS------HLPAGKQVEISLVNGAKNLVV----- 379
Query: 251 GGSPS---PFDRNMGTKQAANTAYQAGIQLVEARSDYKEFCIPMVVI---PSTISNNVPG 304
G P + + +A + Q+ I S+ K P ++ P
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPF----SERK----LKFSNRFLP--VA--SP- 426
Query: 305 TEF-S--LGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDG 361
F S L A + I ++ L ++ A + V Y DT DG
Sbjct: 427 --FHSHLL--VPASDLINKD---LVKNNVSFNAKDIQIPV--------Y--DT----FDG 465
Query: 362 -----VEGLVAGNV--QIMQ----WSDVTG----WV---GQGGAM-LGTKRTLPEKKLPQ 402
+ G ++ + I++ W T + G GGA LG
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV----------- 514
Query: 403 IAAKLKELK----IQALLIIGGFEDEQGHMQ 429
+ + K+ I A + +D+ G Q
Sbjct: 515 LTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 38.5 bits (89), Expect = 0.006
Identities = 49/348 (14%), Positives = 86/348 (24%), Gaps = 143/348 (41%)
Query: 135 KTKAVAKAM---ADKQWDLAVQLRGRQV-----------FPHPSFARNLETY-KMLTRLK 179
KT A+ + AD + + F R E Y M+
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 180 P-----PKSAFDEMGRGLEGYTLAVMHIGAPACGMNAAVRSFCNDNYNTDF--------- 225
+ F E+ YT + ++A T F
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTF-----RSEKGLLSA-----------TQFTQPALTLME 1740
Query: 226 --IYRLYSEEGKGLFSARQNVLGHMQQGGSPS--------------PFDRNMGTKQAANT 269
+ +G L A GH S +
Sbjct: 1741 KAAFEDLKSKG--LIPADATFAGH-------SLGEYAALASLADVMSIE----------- 1780
Query: 270 AYQAGIQLVEARSDYKEFCIPMVVIPSTISNNVPGTEFSLGCDTALNEITEEGYTLAVMH 329
+ +++V R + +P +E+ Y + ++
Sbjct: 1781 ---SLVEVVFYRGMTMQVAVPR------------------------DELGRSNYGMIAIN 1813
Query: 330 IGAPACGMN-AAVRSFVRNCIYRGDTVIGIHDG--VEGLVA----GNVQIMQWSDVTGWV 382
G A + A++ V +G G VE + N Q V
Sbjct: 1814 PGRVAASFSQEALQYVVER--------VGKRTGWLVE--IVNYNVENQQY-----VAA-- 1856
Query: 383 GQGGAMLGTKRTLPEKKLPQI--AAKLKELKIQALLIIGGFEDEQGHM 428
G R L + + KL+++ I L E+ +GH+
Sbjct: 1857 -------GDLRAL--DTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.010
Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 42/112 (37%)
Query: 391 TKRTLP-EKKLPQIAAKLKELKIQALLIIGGFEDEQGHMQQGGSPSPFDRNMGTKQ--AA 447
K + + ++ L EL+ ++I G + GS G K A
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDG-------V--LGS--------G-KTWVAL 168
Query: 448 NTVEWMIDQLKKCTKPDGSVF------TDSPETAVLMGVIRRQYCFTPLQTL 493
+ +C +F +SPET + M LQ L
Sbjct: 169 DVCL---SYKVQCKMDFK-IFWLNLKNCNSPETVLEM-----------LQKL 205
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.020
Identities = 8/43 (18%), Positives = 11/43 (25%), Gaps = 22/43 (51%)
Query: 173 KMLTRLKP--PKSAFDEMGRGLEGYTLAVMHIGAPACGMNAAV 213
K+ LK SA PA + A +
Sbjct: 24 KLQASLKLYADDSA--------------------PALAIKATM 46
Score = 28.0 bits (61), Expect = 4.3
Identities = 4/10 (40%), Positives = 6/10 (60%)
Query: 332 APACGMNAAV 341
APA + A +
Sbjct: 37 APALAIKATM 46
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics,
center for structural genomics of infec diseases, csgid,
alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis}
Length = 288
Score = 29.4 bits (67), Expect = 2.6
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 19/79 (24%)
Query: 83 GGSPSAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLD-GN------QAVR--------- 126
G S A + G + V AL+E T P + LD G+ +A+
Sbjct: 51 GVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMID 110
Query: 127 ---LPLMECVEKTKAVAKA 142
P E VE TK V +
Sbjct: 111 ASHHPFEENVETTKKVVEY 129
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein,
metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP:
c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A*
2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A
2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...
Length = 329
Score = 29.4 bits (65), Expect = 2.7
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 394 TLPEKKLPQIAAKLKELKIQALLIIGGFEDEQGHMQQGGSPSPFDRNMGTKQAANTVEWM 453
PE+K A L ++ I Q P +R G+ + + +
Sbjct: 3 AWPEEKNYHQPAILNSSALRQ---IAEGTSISEMWQNDLQPLLIERYPGSPGSYAARQHI 59
Query: 454 IDQLKK 459
+ ++++
Sbjct: 60 MQRIQR 65
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn
cluster, hydrolase; 1.02A {Escherichia coli} SCOP:
c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Length = 285
Score = 29.0 bits (65), Expect = 3.5
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 140 AKAMADKQWDLAVQLR------GRQVFPHPSFARNLETYKMLTRLKPPKSAFDEMGRGLE 193
A + + D Q+ PH S+ NL K + DEM R +
Sbjct: 41 AAPLTTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQ 100
Query: 194 -GYTLAVMHIGA 204
G +L H G+
Sbjct: 101 LGLSLLNFHPGS 112
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase;
UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A
biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis}
PDB: 2iu9_A* 2iua_A*
Length = 374
Score = 29.2 bits (66), Expect = 3.7
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Query: 346 RNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQGGAMLGT---------KRTLP 396
+ I G I H + +A +V +M + VT + G G ++
Sbjct: 291 NHVIIGGQAGITGH--IC--IADHVIMMAQTGVTKSITSPGIYGGAPARPYQEIHRQVAK 346
Query: 397 EKKLPQIAAKLKELK 411
+ LP++ ++ L+
Sbjct: 347 VRNLPRLEERIAALE 361
>1wk1_A Hypothetical protein YK1067A12; lectin C-type domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Caenorhabditis elegans} SCOP:
d.169.1.1
Length = 150
Score = 27.5 bits (61), Expect = 7.1
Identities = 8/58 (13%), Positives = 12/58 (20%), Gaps = 15/58 (25%)
Query: 320 EEGYTLAVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSD 377
G LA +F + IG+ +G W
Sbjct: 29 SAGGYLADDL--------GDDKNNFYSSIAANTQFWIGLFKNSDG-------QFYWDR 71
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma;
ribosome, protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris}
Length = 68
Score = 25.9 bits (57), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 457 LKKCTKPDGSVFTD-SPETAV---LMGVI 481
+K+CTKPD F + TA+ +MG I
Sbjct: 22 VKRCTKPDRKEFQKIAMATAIGFAIMGFI 50
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Length = 444
Score = 27.9 bits (61), Expect = 8.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 439 RNMGTKQAANTVEWMIDQLKK 459
R G++Q V+W I +L+
Sbjct: 37 RLAGSEQDKVAVDWAIAKLQS 57
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase;
HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A
1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A*
3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A
3den_A* 2a6l_A 2a6n_A 3g0s_A
Length = 292
Score = 27.6 bits (62), Expect = 8.6
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 117 MSLDGNQAVRLPLMECVEKTKA-VAKAMAD 145
+ L +RLP+ + + V A+
Sbjct: 259 LGLVATDTLRLPMTPITDSGRETVRAALKH 288
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,855,649
Number of extensions: 490212
Number of successful extensions: 1279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1204
Number of HSP's successfully gapped: 92
Length of query: 512
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 414
Effective length of database: 3,965,535
Effective search space: 1641731490
Effective search space used: 1641731490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.2 bits)