RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5984
(512 letters)
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 87.1 bits (215), Expect = 2e-19
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 326 AVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQG 385
V+ G + GMNAA+RS VR IY G V G++ G GL+AGN++ ++ DV + +G
Sbjct: 5 GVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHRG 64
Query: 386 GAMLGTKRTLPEKK---LPQIAAKLKELKIQALLIIGGFEDEQG-------HMQQGGSP- 434
G +L T R K + +LK+ IQ L++IGG QG G P
Sbjct: 65 GTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFPCVGVPG 124
Query: 435 ------SPFDRNMGTKQAANTVEWMIDQLKKCTKPDGSVFT 469
D +G A NTV ID+++ +
Sbjct: 125 TIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTYV 165
Score = 84.4 bits (208), Expect = 1e-18
Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 23 KSTGRLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVVVENLKQDTRITVLGHVQR 82
RL G++ +IIIVAEG + E +TR+TVLGHVQR
Sbjct: 200 DVIARLKRGHERGKKHSIIIVAEGVGSGV-------DFGRQIQEATGFETRVTVLGHVQR 252
Query: 83 GGSPSAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQAVRLPLMECVEKTKAVAKA 142
GGSP+AFDRVL R+GA AV L+E G + + NQ V + E + + +
Sbjct: 253 GGSPTAFDRVLASRLGARAVELLLEGKGG---RCVGIQNNQLVDHDIAEALANKHTIDQR 309
Query: 143 MADKQWDLAVQL 154
M + L+ +L
Sbjct: 310 M----YALSKEL 317
Score = 70.9 bits (173), Expect = 4e-14
Identities = 59/329 (17%), Positives = 108/329 (32%), Gaps = 57/329 (17%)
Query: 198 AVMHIGAPACGMNAAVRS---------------------FCNDNY---NTDFIYRLYSEE 233
V+ G + GMNAA+RS N + +
Sbjct: 5 GVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHRG 64
Query: 234 GKGLFSARQNVLGHMQQGGSPSPFDRNMGTKQ----AANTAYQAGIQLVEARSDYKEFCI 289
G L++AR + + G + + +YQ +L E
Sbjct: 65 GTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKL-------TEHGF 117
Query: 290 PMVVIPSTISNNVPGTEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCI 349
P V +P TI N++PGT+F++G DTALN + + + + + R+
Sbjct: 118 PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTYV---IEVMGRHAG 174
Query: 350 YRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQGGAMLGTKRTLPEKKLPQIAAKLKE 409
G+ G E ++ + + + G G K ++ +
Sbjct: 175 DIA-LWSGLAGGAETIL--IPEADYDMNDVIARLKRGHERGKKHSIIIVAEGVGSGVDFG 231
Query: 410 LKIQALLIIGGFEDEQGHMQQGGSPSPFDRNMGTKQAANTVEWMIDQLKKCTKPDGSVFT 469
+IQ GH+Q+GGSP+ FDR + ++ A VE +++
Sbjct: 232 RQIQEATGFETRVTVLGHVQRGGSPTAFDRVLASRLGARAVELLLEG------------- 278
Query: 470 DSPETAVLMGVIRRQYCFTPLQTLKKETN 498
+ +G+ Q + +
Sbjct: 279 ---KGGRCVGIQNNQLVDHDIAEALANKH 304
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 87.1 bits (215), Expect = 2e-19
Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 17/160 (10%)
Query: 326 AVMHIGAPACGMNAAVRSFVRNCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQG 385
V+ G A GMNAA+R VR+ + G V+GI+DG GL + + V+ + +G
Sbjct: 6 GVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRG 65
Query: 386 GAMLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGGFE-------DEQGHMQQGGSPS 435
G LG+ R E LK+ I AL++IGG + G P
Sbjct: 66 GTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIGLPG 125
Query: 436 PFDRNM-------GTKQAANTVEWMIDQLKKCTKPDGSVF 468
D ++ G A +TV ID+L+ + +
Sbjct: 126 TIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQRIS 165
Score = 82.8 bits (204), Expect = 4e-18
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 7 LWPRKQILCSPLNGLP--KSTGRLACERTAGQRLNIIIVAEGAIDRDGKPITAEKVKEVV 64
+ + + P + G++ I+ + E D D +
Sbjct: 183 IAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEHMCDVDELA-------HFI 235
Query: 65 VENLKQDTRITVLGHVQRGGSPSAFDRVLGCRMGAEAVMALMEATPGTEPCVMSLDGNQA 124
+ ++TR TVLGH+QRGGSP +DR+L RMGA A+ L+ G + + Q
Sbjct: 236 EKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGG---RCVGIQNEQL 292
Query: 125 VRLPLMECVEKTK 137
V +++ +E K
Sbjct: 293 VHHDIIDAIENMK 305
Score = 69.0 bits (168), Expect = 2e-13
Identities = 62/318 (19%), Positives = 102/318 (32%), Gaps = 51/318 (16%)
Query: 198 AVMHIGAPACGMNAAVRSF----CNDNYNTDFIYRLYSEEGKGLFS------ARQNVLGH 247
V+ G A GMNAA+R + IY Y GL+ R +V
Sbjct: 6 GVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGY----LGLYEDRMVQLDRYSVSDM 61
Query: 248 MQQGGSPS------PFDRNMGTKQAANTAYQAGIQLV---------EARSDYKEFCIPMV 292
+ +GG+ F A + GI + E P +
Sbjct: 62 INRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCI 121
Query: 293 VIPSTISNNVPGTEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRSFVRNCIYRG 352
+P TI N++ GT++++G TAL+ + E L + V R C
Sbjct: 122 GLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQRISV---VEVMGRYCGDLT 178
Query: 353 DTVIGIHDGVEGLVAGNVQIMQWSDVTGWVGQGGAMLGTKRTLPEKKLPQIAAKLKELKI 412
I G E +V V+ D+ + G G K + I
Sbjct: 179 -LAAAIAGGCEFVVVPEVE-FSREDLVNEIKA-GIAKGKKHAIVAITEHMCDVDELAHFI 235
Query: 413 QALLIIGGFEDEQGHMQQGGSPSPFDRNMGTKQAANTVEWMIDQLKKCTKPDGSVFTDSP 472
+ GH+Q+GGSP P+DR + ++ A ++ ++
Sbjct: 236 EKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAG---------------- 279
Query: 473 ETAVLMGVIRRQYCFTPL 490
+G+ Q +
Sbjct: 280 YGGRCVGIQNEQLVHHDI 297
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 87.4 bits (216), Expect = 7e-19
Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 35/210 (16%)
Query: 326 AVMHIGAPACGMNAAVRSFVR--NCIYRGDTVIGIHDGVEGLVAGNVQIMQWSDVTGWVG 383
++ G PA G + + + G G GL+ + + S + +
Sbjct: 73 GIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRN 132
Query: 384 QGGAMLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGG-------------FEDEQGH 427
GG + + E+ + KE + A++IIGG F+ +
Sbjct: 133 TGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGEN 192
Query: 428 MQQGGSPSPF---------DRNMGTKQAANTVEWMIDQLKKCTKPDGS------VFTDSP 472
+Q G P + + G A +I L + + S
Sbjct: 193 IQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSA 252
Query: 473 ETAVLMGVI--RRQYCFTPLQTLKKETNFE 500
L + C + L K+
Sbjct: 253 SHVALECALKTHPNICIVSEEVLAKKKTLS 282
Score = 55.1 bits (132), Expect = 1e-08
Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 12/123 (9%)
Query: 58 EKVKEVVVENLKQDTRITVLGHVQRGGSPSAFDRVLGCRMGAEAVMALMEATPGTEPCVM 117
+K+ G+ R PS FD +G AV+ ++ G C+
Sbjct: 404 NDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIK 463
Query: 118 SLDGN----QAVRLPL--MECVEKTKAVAKAMADKQWDLAVQLRGRQVFPHPSFARNLET 171
+L+ A +PL + +E+ K + K V L GR P F +N +
Sbjct: 464 NLNLKPTDWIAGGVPLTMLMNMEERYGEKKPVIKKA---LVDLEGR---PFKEFVKNRDK 517
Query: 172 YKM 174
+ +
Sbjct: 518 WAL 520
Score = 51.2 bits (122), Expect = 2e-07
Identities = 23/177 (12%), Positives = 50/177 (28%), Gaps = 31/177 (17%)
Query: 198 AVMHIGAPACGMNAAVRSFCNDNYNTDFIYRLYS-EEG-KGLFS------ARQNVLGHMQ 249
++ G PA G + + + + +L+ + G GL + +
Sbjct: 73 GIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRN 132
Query: 250 QGGSP------SPFDRNMGTKQAANTAYQAGI---------------QLVEARSDYKEFC 288
GG + + +A A + + ++
Sbjct: 133 TGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGEN 192
Query: 289 IPMVVIPSTISNNVPG--TEFSLGCDTALNEITEEGYTLAVMHIGAPACGMNAAVRS 343
I ++ +P TI ++ E S G D+A +E L + +
Sbjct: 193 IQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMG 249
Score = 37.3 bits (86), Expect = 0.004
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 233 EGKGLFSARQNVLGHMQQGGSPSPFDRNMGTKQAANTAYQA 273
E KG F+ + G+ + PS FD + A
Sbjct: 411 EYKGSFTPVDHFFGYEGRSAFPSNFDSDYCY-SLGYNAVVL 450
Score = 32.7 bits (74), Expect = 0.098
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 402 QIAAKLKELK--IQALLIIGGFEDEQGHMQQGGSPSPFDRNMGTKQAANTVE 451
I ++L ++K + + G+ + PS FD + N V
Sbjct: 398 MIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVV 449
>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor
ectodomain, protease-like domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 294
Score = 29.8 bits (66), Expect = 0.70
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 422 EDEQGHMQQGGSPSPFDRNMGTKQAANTVEWMIDQLKK 459
D ++ S R G+++ N ++ +Q ++
Sbjct: 17 TDFTSTIKLLNENSYVPREAGSQKDENLALYVENQFRE 54
>d1luaa2 c.58.1.4 (A:2-97) Methylene-tetrahydromethanopterin
dehydrogenase {Methylobacterium extorquens [TaxId: 408]}
Length = 96
Score = 26.2 bits (58), Expect = 3.3
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 17/69 (24%)
Query: 242 QNVLGHMQQGGSPSPFDRNMGTKQAANTAYQAGIQLVEARSDYKEFCIPMVVIPSTISNN 301
+ +L +PS FD + Y G + + V P +
Sbjct: 2 KKLLFQFDTDATPSVFDVVV--------GYDGGADHITGYGN---------VTPDNVGAY 44
Query: 302 VPGTEFSLG 310
V GT ++ G
Sbjct: 45 VDGTIYTRG 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,876,945
Number of extensions: 88402
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 17
Length of query: 512
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 423
Effective length of database: 1,185,626
Effective search space: 501519798
Effective search space used: 501519798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)