Query psy5985
Match_columns 153
No_of_seqs 157 out of 1165
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 23:37:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02482 PFKA_ATP 6-phosphofr 100.0 9E-42 1.9E-46 287.5 15.1 136 1-142 65-260 (301)
2 cd00763 Bacterial_PFK Phosphof 100.0 4.2E-41 9.2E-46 285.1 14.3 133 1-141 66-257 (317)
3 PRK03202 6-phosphofructokinase 100.0 6.7E-41 1.5E-45 284.2 14.0 134 1-142 67-259 (320)
4 TIGR02483 PFK_mixed phosphofru 100.0 1.5E-40 3.2E-45 282.5 14.1 137 1-142 67-283 (324)
5 PF00365 PFK: Phosphofructokin 100.0 4.7E-41 1E-45 280.7 9.3 137 1-142 66-264 (282)
6 PRK14071 6-phosphofructokinase 100.0 7.9E-40 1.7E-44 281.4 14.6 137 1-142 73-294 (360)
7 cd00764 Eukaryotic_PFK Phospho 100.0 2.2E-39 4.9E-44 299.0 15.4 139 1-142 71-296 (762)
8 PRK14072 6-phosphofructokinase 100.0 3.5E-39 7.5E-44 281.8 13.4 135 1-141 74-307 (416)
9 TIGR02478 6PF1K_euk 6-phosphof 100.0 6.1E-39 1.3E-43 296.2 15.6 142 1-142 455-661 (745)
10 cd00363 PFK Phosphofructokinas 100.0 6.8E-39 1.5E-43 273.4 13.9 137 1-142 66-274 (338)
11 TIGR02478 6PF1K_euk 6-phosphof 100.0 1.2E-38 2.7E-43 294.2 15.0 137 1-142 68-293 (745)
12 PRK06555 pyrophosphate--fructo 100.0 2.1E-38 4.5E-43 275.6 13.9 136 1-142 74-334 (403)
13 COG0205 PfkA 6-phosphofructoki 100.0 3.8E-38 8.2E-43 269.7 15.1 138 1-141 68-271 (347)
14 cd00764 Eukaryotic_PFK Phospho 100.0 1.3E-38 2.8E-43 293.9 12.1 138 1-142 455-660 (762)
15 PLN02884 6-phosphofructokinase 100.0 1.5E-37 3.2E-42 271.2 14.5 136 1-142 122-344 (411)
16 PLN02564 6-phosphofructokinase 100.0 7.3E-37 1.6E-41 270.6 14.7 139 1-142 155-382 (484)
17 PRK06830 diphosphate--fructose 100.0 6.5E-36 1.4E-40 262.8 15.1 139 1-142 151-373 (443)
18 PTZ00286 6-phospho-1-fructokin 100.0 6.1E-36 1.3E-40 264.0 14.8 136 1-142 155-376 (459)
19 TIGR02477 PFKA_PPi diphosphate 100.0 1E-30 2.2E-35 234.5 13.4 104 1-104 136-311 (539)
20 PRK07085 diphosphate--fructose 100.0 2.8E-30 6E-35 232.3 14.8 104 1-104 139-314 (555)
21 PLN02251 pyrophosphate-depende 100.0 8E-30 1.7E-34 229.6 15.0 102 1-102 165-338 (568)
22 cd00765 Pyrophosphate_PFK Phos 100.0 5.5E-30 1.2E-34 230.1 13.3 104 1-104 141-316 (550)
23 PTZ00287 6-phosphofructokinase 100.0 1.6E-28 3.4E-33 235.7 14.7 104 1-104 246-421 (1419)
24 PLN03028 pyrophosphate--fructo 100.0 9.3E-28 2E-32 217.7 13.7 104 1-104 148-323 (610)
25 PTZ00468 phosphofructokinase f 99.9 1.4E-27 3E-32 228.0 14.3 103 1-103 171-345 (1328)
26 PTZ00287 6-phosphofructokinase 99.9 6.4E-25 1.4E-29 211.0 11.3 104 2-105 903-1079(1419)
27 KOG2440|consensus 99.9 4.7E-23 1E-27 187.3 9.6 141 2-142 439-644 (666)
28 PTZ00468 phosphofructokinase f 99.9 1.7E-22 3.6E-27 193.5 13.5 106 12-117 788-979 (1328)
29 KOG2440|consensus 99.8 5.6E-21 1.2E-25 173.8 9.9 137 1-142 64-283 (666)
30 PRK00561 ppnK inorganic polyph 89.3 0.24 5.1E-06 41.5 2.0 27 11-37 15-46 (259)
31 PRK04761 ppnK inorganic polyph 87.9 0.33 7.1E-06 40.3 1.9 25 13-37 8-38 (246)
32 PRK04885 ppnK inorganic polyph 86.2 0.59 1.3E-05 39.1 2.6 26 12-37 16-48 (265)
33 PRK13054 lipid kinase; Reviewe 86.0 0.78 1.7E-05 38.2 3.2 27 11-37 43-69 (300)
34 TIGR00147 lipid kinase, YegS/R 85.3 0.9 2E-05 37.4 3.2 24 14-37 47-70 (293)
35 PRK13055 putative lipid kinase 83.9 1 2.3E-05 38.2 3.1 26 12-37 47-72 (334)
36 TIGR03702 lip_kinase_YegS lipi 83.8 1.1 2.5E-05 37.1 3.2 27 11-37 39-65 (293)
37 PRK13337 putative lipid kinase 83.8 1.2 2.5E-05 37.3 3.3 26 12-37 45-70 (304)
38 PRK11914 diacylglycerol kinase 83.7 0.88 1.9E-05 37.9 2.5 26 12-37 52-77 (306)
39 PRK03501 ppnK inorganic polyph 83.1 0.97 2.1E-05 37.8 2.5 25 13-37 19-52 (264)
40 PRK02645 ppnK inorganic polyph 82.4 0.71 1.5E-05 39.2 1.4 14 24-37 57-70 (305)
41 PRK00861 putative lipid kinase 81.9 1.2 2.7E-05 36.9 2.7 26 12-37 45-70 (300)
42 PRK14075 pnk inorganic polypho 81.4 1.3 2.7E-05 36.8 2.5 26 12-37 14-54 (256)
43 PF01513 NAD_kinase: ATP-NAD k 80.0 0.62 1.3E-05 38.8 0.3 23 15-37 67-89 (285)
44 PRK12361 hypothetical protein; 77.9 2.2 4.8E-05 38.6 3.2 26 12-37 285-310 (547)
45 PRK13371 4-hydroxy-3-methylbut 77.4 1.5 3.3E-05 38.8 1.9 39 11-49 275-328 (387)
46 PLN02958 diacylglycerol kinase 76.8 2.2 4.8E-05 38.5 2.9 26 12-37 156-181 (481)
47 PRK03708 ppnK inorganic polyph 76.8 1.4 3.1E-05 36.9 1.6 16 22-37 55-70 (277)
48 PF00781 DAGK_cat: Diacylglyce 76.8 1.7 3.6E-05 31.6 1.7 24 14-37 43-67 (130)
49 PLN02821 1-hydroxy-2-methyl-2- 75.5 1.8 4E-05 39.1 2.0 38 11-48 349-401 (460)
50 PRK15447 putative protease; Pr 75.5 16 0.00036 30.7 7.6 33 51-83 18-57 (301)
51 PRK13057 putative lipid kinase 75.4 1.7 3.7E-05 35.9 1.6 24 13-37 40-63 (287)
52 COG1597 LCB5 Sphingosine kinas 74.8 3 6.4E-05 35.3 3.0 26 12-37 46-71 (301)
53 PRK02231 ppnK inorganic polyph 74.5 1.8 3.8E-05 36.4 1.5 14 24-37 42-55 (272)
54 PRK13059 putative lipid kinase 72.4 3.2 6.9E-05 34.6 2.6 19 19-37 51-69 (295)
55 PRK14077 pnk inorganic polypho 71.7 1.8 3.8E-05 36.6 0.9 14 24-37 64-77 (287)
56 COG3199 Predicted inorganic po 71.3 3.9 8.5E-05 35.8 2.9 27 11-37 87-113 (355)
57 smart00046 DAGKc Diacylglycero 71.1 2 4.4E-05 31.3 1.0 14 24-37 49-62 (124)
58 PF00571 CBS: CBS domain CBS d 71.1 16 0.00034 22.0 5.0 32 10-41 15-46 (57)
59 PRK02649 ppnK inorganic polyph 70.6 1.9 4.1E-05 36.8 0.8 14 24-37 68-81 (305)
60 PRK03378 ppnK inorganic polyph 70.2 2 4.3E-05 36.4 0.9 14 24-37 63-76 (292)
61 PRK04539 ppnK inorganic polyph 69.3 2.1 4.6E-05 36.3 0.9 14 24-37 68-81 (296)
62 PLN02935 Bifunctional NADH kin 69.3 2.4 5.2E-05 38.8 1.3 14 24-37 262-275 (508)
63 PRK01185 ppnK inorganic polyph 69.0 2.2 4.8E-05 35.8 0.9 14 24-37 52-65 (271)
64 PRK01911 ppnK inorganic polyph 68.6 2.3 4.9E-05 36.1 0.9 14 24-37 64-77 (292)
65 PRK03372 ppnK inorganic polyph 68.2 2.4 5.2E-05 36.2 1.0 14 24-37 72-85 (306)
66 PLN02929 NADH kinase 66.4 2.8 6E-05 35.9 1.0 14 24-37 64-77 (301)
67 cd00952 CHBPH_aldolase Trans-o 65.6 55 0.0012 27.6 8.7 103 10-115 28-160 (309)
68 TIGR00676 fadh2 5,10-methylene 63.9 37 0.0008 28.1 7.2 33 4-36 66-98 (272)
69 TIGR00677 fadh2_euk methylenet 63.7 43 0.00094 28.0 7.7 33 4-36 67-99 (281)
70 PRK01045 ispH 4-hydroxy-3-meth 63.2 11 0.00023 32.3 3.9 44 11-65 198-241 (298)
71 PRK02155 ppnK NAD(+)/NADH kina 61.4 3.7 8.1E-05 34.6 0.9 14 24-37 63-76 (291)
72 cd01985 ETF The electron trans 57.7 56 0.0012 24.8 6.9 61 40-104 39-103 (181)
73 PF02401 LYTB: LytB protein; 56.4 11 0.00024 31.9 2.9 26 11-37 197-222 (281)
74 cd00537 MTHFR Methylenetetrahy 56.3 13 0.00027 30.6 3.2 34 4-37 66-99 (274)
75 PRK14076 pnk inorganic polypho 56.3 5 0.00011 36.9 0.9 14 24-37 348-361 (569)
76 cd03784 GT1_Gtf_like This fami 54.9 32 0.00069 29.0 5.5 54 11-69 256-333 (401)
77 PF04122 CW_binding_2: Putativ 54.6 19 0.00041 24.5 3.4 24 14-37 62-85 (92)
78 COG0329 DapA Dihydrodipicolina 53.9 19 0.00042 30.4 4.0 102 10-115 24-155 (299)
79 PRK12360 4-hydroxy-3-methylbut 53.9 17 0.00036 30.9 3.6 44 11-65 197-240 (281)
80 cd00951 KDGDH 5-dehydro-4-deox 53.6 1E+02 0.0022 25.5 8.3 100 10-116 20-148 (289)
81 PLN02727 NAD kinase 52.6 6.1 0.00013 38.9 0.8 14 24-37 743-756 (986)
82 PF02219 MTHFR: Methylenetetra 51.1 38 0.00081 28.2 5.2 33 4-36 78-110 (287)
83 COG1122 CbiO ABC-type cobalt t 50.9 56 0.0012 26.7 6.1 81 12-99 115-196 (235)
84 PRK09432 metF 5,10-methylenete 50.6 17 0.00038 30.7 3.2 84 4-92 90-178 (296)
85 cd03240 ABC_Rad50 The catalyti 50.6 61 0.0013 25.4 6.2 50 51-100 130-181 (204)
86 TIGR00216 ispH_lytB (E)-4-hydr 50.6 23 0.0005 30.0 3.9 26 11-37 196-221 (280)
87 KOG1465|consensus 50.5 45 0.00097 29.1 5.6 48 60-115 162-209 (353)
88 cd08173 Gro1PDH Sn-glycerol-1- 49.8 34 0.00073 29.0 4.8 46 11-68 65-110 (339)
89 PRK04302 triosephosphate isome 49.6 41 0.00088 26.8 5.1 39 43-81 68-108 (223)
90 PF05575 V_cholerae_RfbT: Vibr 49.4 47 0.001 27.0 5.3 38 97-138 197-238 (286)
91 PRK03170 dihydrodipicolinate s 49.2 1.4E+02 0.003 24.6 8.3 100 10-114 21-151 (292)
92 TIGR01426 MGT glycosyltransfer 49.1 50 0.0011 27.9 5.8 58 12-69 242-320 (392)
93 PF10087 DUF2325: Uncharacteri 49.0 71 0.0015 22.0 5.7 39 45-84 30-71 (97)
94 TIGR00161 conserved hypothetic 48.4 1.5E+02 0.0032 24.1 8.9 27 11-37 94-120 (238)
95 PLN02204 diacylglycerol kinase 48.3 12 0.00025 35.2 1.9 16 22-37 216-231 (601)
96 PRK00843 egsA NAD(P)-dependent 47.7 34 0.00074 29.2 4.6 24 11-34 74-97 (350)
97 cd03267 ABC_NatA_like Similar 47.5 78 0.0017 25.1 6.4 57 43-99 154-211 (236)
98 PRK01231 ppnK inorganic polyph 45.7 8.9 0.00019 32.5 0.7 14 24-37 62-75 (295)
99 TIGR02313 HpaI-NOT-DapA 2,4-di 44.8 1.8E+02 0.004 24.2 8.7 104 10-116 20-153 (294)
100 PF00465 Fe-ADH: Iron-containi 44.4 21 0.00046 30.4 2.8 28 10-37 64-91 (366)
101 PRK10584 putative ABC transpor 44.3 84 0.0018 24.5 6.1 79 14-99 125-204 (228)
102 cd03255 ABC_MJ0796_Lo1CDE_FtsE 44.3 84 0.0018 24.3 6.0 78 15-99 120-198 (218)
103 PRK07107 inosine 5-monophospha 44.1 2.3E+02 0.005 25.9 9.5 74 10-84 179-278 (502)
104 PRK03620 5-dehydro-4-deoxygluc 43.8 1.9E+02 0.0041 24.2 8.4 99 11-115 28-154 (303)
105 cd03297 ABC_ModC_molybdenum_tr 43.4 88 0.0019 24.2 6.0 59 41-99 130-189 (214)
106 KOG4435|consensus 43.3 21 0.00046 32.3 2.7 25 12-37 105-129 (535)
107 PRK11629 lolD lipoprotein tran 43.3 91 0.002 24.5 6.1 49 50-99 153-203 (233)
108 TIGR03864 PQQ_ABC_ATP ABC tran 43.3 89 0.0019 24.6 6.1 79 14-99 111-190 (236)
109 cd03296 ABC_CysA_sulfate_impor 42.9 85 0.0018 24.8 5.9 58 42-99 136-194 (239)
110 TIGR01277 thiQ thiamine ABC tr 41.8 1E+02 0.0022 23.9 6.1 79 14-99 107-186 (213)
111 cd03237 ABC_RNaseL_inhibitor_d 41.7 90 0.002 25.2 6.0 54 46-99 119-173 (246)
112 cd03293 ABC_NrtD_SsuB_transpor 40.8 1.1E+02 0.0023 23.8 6.1 79 14-99 110-189 (220)
113 COG1938 Archaeal enzymes of AT 40.7 2E+02 0.0044 24.0 7.9 60 11-70 94-180 (244)
114 cd07766 DHQ_Fe-ADH Dehydroquin 40.7 62 0.0013 27.0 5.0 26 10-35 64-89 (332)
115 PF12804 NTP_transf_3: MobA-li 40.1 1.4E+02 0.0031 21.5 8.9 87 11-101 25-125 (160)
116 cd03230 ABC_DR_subfamily_A Thi 40.0 1.2E+02 0.0026 22.7 6.1 50 49-99 102-152 (173)
117 cd03214 ABC_Iron-Siderophores_ 40.0 1.1E+02 0.0024 23.0 6.0 52 49-100 104-156 (180)
118 TIGR02323 CP_lyasePhnK phospho 39.9 1E+02 0.0022 24.4 6.0 53 48-100 154-207 (253)
119 TIGR01184 ntrCD nitrate transp 39.9 1.1E+02 0.0024 24.1 6.1 79 15-100 94-173 (230)
120 PRK10247 putative ABC transpor 39.8 1E+02 0.0023 24.1 6.0 57 42-99 137-195 (225)
121 TIGR01860 VNFD nitrogenase van 39.8 1.9E+02 0.0042 25.8 8.3 65 10-77 213-287 (461)
122 cd03256 ABC_PhnC_transporter A 39.8 1E+02 0.0022 24.2 5.9 80 13-99 122-202 (241)
123 TIGR00162 conserved hypothetic 39.8 1.6E+02 0.0034 23.2 7.0 60 12-71 35-122 (188)
124 TIGR02211 LolD_lipo_ex lipopro 38.7 1.2E+02 0.0025 23.5 6.1 78 15-99 121-199 (221)
125 TIGR01101 V_ATP_synt_F vacuola 38.3 1.6E+02 0.0035 21.7 6.4 65 70-145 42-106 (115)
126 COG0685 MetF 5,10-methylenetet 38.3 34 0.00073 28.9 3.0 79 4-89 85-174 (291)
127 cd03268 ABC_BcrA_bacitracin_re 38.2 1.2E+02 0.0027 23.2 6.1 55 44-99 128-183 (208)
128 COG0061 nadF NAD kinase [Coenz 37.8 21 0.00045 29.9 1.7 15 23-37 54-68 (281)
129 PRK11300 livG leucine/isoleuci 37.7 1.3E+02 0.0027 23.9 6.2 55 45-99 156-211 (255)
130 cd03258 ABC_MetN_methionine_tr 37.4 1.2E+02 0.0026 23.7 6.0 58 42-99 140-198 (233)
131 cd08196 DHQS-like1 Dehydroquin 37.3 65 0.0014 27.8 4.7 25 11-35 60-87 (346)
132 COG0826 Collagenase and relate 37.3 1.3E+02 0.0028 26.2 6.5 33 50-82 16-57 (347)
133 cd03235 ABC_Metallic_Cations A 37.1 1.3E+02 0.0029 23.1 6.2 77 15-99 112-189 (213)
134 cd03265 ABC_DrrA DrrA is the A 37.0 1.3E+02 0.0029 23.3 6.1 79 14-99 110-189 (220)
135 cd03295 ABC_OpuCA_Osmoprotecti 36.8 1.2E+02 0.0025 24.0 5.9 55 45-99 138-193 (242)
136 cd03257 ABC_NikE_OppD_transpor 36.7 1.3E+02 0.0027 23.3 6.0 58 42-99 145-203 (228)
137 PRK10771 thiQ thiamine transpo 36.7 1.3E+02 0.0027 23.7 6.0 57 42-99 129-187 (232)
138 cd03298 ABC_ThiQ_thiamine_tran 36.6 1.3E+02 0.0028 23.1 6.0 78 15-99 108-186 (211)
139 PRK13640 cbiO cobalt transport 36.5 1.2E+02 0.0026 24.9 6.0 55 45-99 146-201 (282)
140 PF01321 Creatinase_N: Creatin 36.5 42 0.00092 23.3 2.9 21 13-33 2-22 (132)
141 cd00954 NAL N-Acetylneuraminic 36.1 2.5E+02 0.0053 23.2 8.8 103 10-115 20-153 (288)
142 cd08199 EEVS 2-epi-5-epi-valio 36.1 72 0.0016 27.5 4.8 45 12-68 72-122 (354)
143 PRK10575 iron-hydroxamate tran 36.0 1.3E+02 0.0027 24.3 6.1 80 14-100 126-206 (265)
144 cd03299 ABC_ModC_like Archeal 35.9 1.4E+02 0.0029 23.6 6.1 59 42-100 129-188 (235)
145 cd03229 ABC_Class3 This class 35.8 1.5E+02 0.0032 22.3 6.1 52 48-99 106-158 (178)
146 cd03250 ABCC_MRP_domain1 Domai 35.8 1.7E+02 0.0038 22.3 6.6 55 44-99 129-185 (204)
147 PRK13635 cbiO cobalt transport 35.7 1.3E+02 0.0029 24.6 6.2 57 43-99 141-198 (279)
148 cd03213 ABCG_EPDR ABCG transpo 35.6 1.5E+02 0.0033 22.7 6.2 55 45-100 114-169 (194)
149 cd03259 ABC_Carb_Solutes_like 35.6 1.3E+02 0.0029 23.0 5.9 58 42-99 130-188 (213)
150 PF04405 ScdA_N: Domain of Unk 35.4 26 0.00057 22.5 1.6 23 13-37 12-34 (56)
151 COG2217 ZntA Cation transport 35.3 47 0.001 31.8 3.8 73 10-104 539-611 (713)
152 PRK13650 cbiO cobalt transport 35.3 1.4E+02 0.003 24.5 6.2 79 14-99 119-198 (279)
153 cd03301 ABC_MalK_N The N-termi 35.2 1.4E+02 0.0031 22.9 6.0 78 15-99 110-188 (213)
154 cd03261 ABC_Org_Solvent_Resist 34.8 1.4E+02 0.003 23.4 5.9 78 15-99 116-194 (235)
155 cd03300 ABC_PotA_N PotA is an 34.4 1.4E+02 0.0031 23.4 6.0 80 15-101 110-190 (232)
156 cd03294 ABC_Pro_Gly_Bertaine T 34.4 1.4E+02 0.0031 24.2 6.1 58 42-99 160-218 (269)
157 cd03219 ABC_Mj1267_LivG_branch 34.4 1.6E+02 0.0035 23.0 6.3 77 15-99 123-200 (236)
158 PRK14090 phosphoribosylformylg 34.3 1.5E+02 0.0033 27.8 6.9 80 13-104 454-555 (601)
159 TIGR03005 ectoine_ehuA ectoine 34.1 1.4E+02 0.0031 23.6 6.0 57 43-99 147-204 (252)
160 cd08551 Fe-ADH iron-containing 33.8 39 0.00084 28.9 2.8 28 10-37 66-93 (370)
161 PRK15177 Vi polysaccharide exp 33.7 1.2E+02 0.0026 23.8 5.4 31 46-76 108-138 (213)
162 cd08181 PPD-like 1,3-propanedi 33.7 44 0.00095 28.6 3.1 28 10-37 69-96 (357)
163 KOG2178|consensus 33.6 25 0.00054 31.5 1.6 56 23-84 167-222 (409)
164 PRK15452 putative protease; Pr 33.6 1.3E+02 0.0028 27.0 6.2 33 49-81 11-53 (443)
165 PRK13646 cbiO cobalt transport 33.5 1.4E+02 0.003 24.5 6.0 57 43-99 146-203 (286)
166 cd08195 DHQS Dehydroquinate sy 33.5 77 0.0017 26.9 4.5 24 11-34 69-95 (345)
167 TIGR00960 3a0501s02 Type II (G 33.4 1.7E+02 0.0037 22.5 6.2 78 14-99 117-195 (216)
168 PRK14250 phosphate ABC transpo 33.3 1.6E+02 0.0034 23.4 6.1 57 43-99 132-189 (241)
169 cd04618 CBS_pair_5 The CBS dom 33.2 1.3E+02 0.0028 20.2 4.9 30 10-39 58-88 (98)
170 PRK09860 putative alcohol dehy 33.0 44 0.00095 29.0 3.0 28 10-37 74-101 (383)
171 TIGR02770 nickel_nikD nickel i 32.9 1.6E+02 0.0035 23.0 6.1 80 14-99 101-183 (230)
172 PRK09984 phosphonate/organopho 32.8 1.5E+02 0.0032 23.8 5.9 80 14-101 131-212 (262)
173 PRK11831 putative ABC transpor 32.7 1.5E+02 0.0034 23.9 6.1 58 42-99 143-201 (269)
174 TIGR03410 urea_trans_UrtE urea 32.7 1.8E+02 0.0038 22.7 6.3 55 45-99 134-189 (230)
175 PRK13951 bifunctional shikimat 32.7 73 0.0016 28.9 4.5 46 11-68 221-271 (488)
176 TIGR02315 ABC_phnC phosphonate 32.6 1.5E+02 0.0032 23.2 5.9 79 14-99 124-203 (243)
177 PRK13634 cbiO cobalt transport 32.5 1.5E+02 0.0033 24.4 6.0 79 14-99 123-203 (290)
178 PRK00087 4-hydroxy-3-methylbut 32.3 58 0.0013 30.4 3.9 50 11-61 194-261 (647)
179 PRK11701 phnK phosphonate C-P 32.1 1.7E+02 0.0036 23.4 6.1 60 42-101 151-211 (258)
180 PF02844 GARS_N: Phosphoribosy 32.1 45 0.00097 24.0 2.5 21 11-32 49-69 (100)
181 cd08177 MAR Maleylacetate redu 31.9 44 0.00095 28.3 2.8 27 10-36 63-89 (337)
182 cd03266 ABC_NatA_sodium_export 31.8 1.9E+02 0.0042 22.2 6.3 54 45-99 139-193 (218)
183 cd08193 HVD 5-hydroxyvalerate 31.7 43 0.00094 28.8 2.8 28 10-37 69-96 (376)
184 PRK14258 phosphate ABC transpo 31.7 1.7E+02 0.0037 23.5 6.1 58 43-101 151-210 (261)
185 PRK11248 tauB taurine transpor 31.5 1.6E+02 0.0036 23.6 6.0 55 45-99 131-186 (255)
186 TIGR01978 sufC FeS assembly AT 31.3 1.9E+02 0.0041 22.6 6.2 52 47-99 149-201 (243)
187 cd08178 AAD_C C-terminal alcoh 31.2 45 0.00097 29.0 2.8 28 10-37 64-91 (398)
188 cd04603 CBS_pair_KefB_assoc Th 31.1 1.4E+02 0.003 20.0 4.8 31 10-40 72-102 (111)
189 PRK13648 cbiO cobalt transport 31.0 1.7E+02 0.0038 23.5 6.1 78 15-99 122-200 (269)
190 cd03246 ABCC_Protease_Secretio 30.9 2.1E+02 0.0045 21.4 6.2 49 50-99 104-153 (173)
191 TIGR02673 FtsE cell division A 30.8 2E+02 0.0043 22.1 6.2 56 42-99 137-194 (214)
192 PRK13632 cbiO cobalt transport 30.4 1.8E+02 0.0038 23.6 6.1 59 42-100 142-201 (271)
193 cd08180 PDD 1,3-propanediol de 30.4 48 0.001 28.0 2.8 28 10-37 64-91 (332)
194 cd03215 ABC_Carb_Monos_II This 30.4 2.1E+02 0.0046 21.5 6.2 49 50-99 112-161 (182)
195 TIGR02769 nickel_nikE nickel i 30.3 1.8E+02 0.0038 23.5 6.0 80 14-100 128-209 (265)
196 TIGR02982 heterocyst_DevA ABC 30.3 1.8E+02 0.004 22.5 6.0 52 48-99 147-199 (220)
197 PRK13540 cytochrome c biogenes 30.1 2.1E+02 0.0046 21.8 6.2 55 44-99 129-184 (200)
198 PRK15112 antimicrobial peptide 30.1 1.7E+02 0.0038 23.6 6.0 55 45-99 152-207 (267)
199 cd03224 ABC_TM1139_LivF_branch 30.0 2.1E+02 0.0045 22.0 6.2 57 43-100 133-190 (222)
200 cd08189 Fe-ADH5 Iron-containin 30.0 49 0.0011 28.5 2.8 28 10-37 69-96 (374)
201 cd03216 ABC_Carb_Monos_I This 29.9 2.3E+02 0.0049 21.1 6.2 49 49-99 89-139 (163)
202 cd08182 HEPD Hydroxyethylphosp 29.9 48 0.001 28.4 2.7 28 10-37 63-90 (367)
203 PRK13647 cbiO cobalt transport 29.8 1.9E+02 0.0042 23.5 6.2 77 15-99 118-195 (274)
204 cd03232 ABC_PDR_domain2 The pl 29.6 2.2E+02 0.0047 21.7 6.2 56 43-100 109-166 (192)
205 PRK13538 cytochrome c biogenes 29.5 2.2E+02 0.0047 21.9 6.2 56 42-99 129-186 (204)
206 cd08172 GlyDH-like1 Glycerol d 29.4 50 0.0011 28.1 2.7 28 10-37 62-89 (347)
207 PF04914 DltD_C: DltD C-termin 29.4 59 0.0013 24.4 2.8 21 11-31 36-56 (130)
208 TIGR02638 lactal_redase lactal 29.3 51 0.0011 28.5 2.8 28 10-37 72-99 (379)
209 PRK11247 ssuB aliphatic sulfon 29.2 1.9E+02 0.004 23.5 6.0 56 44-99 135-191 (257)
210 cd03264 ABC_drug_resistance_li 29.2 2.1E+02 0.0045 21.9 6.0 77 14-99 109-186 (211)
211 TIGR00968 3a0106s01 sulfate AB 29.2 2E+02 0.0044 22.6 6.1 55 45-99 133-188 (237)
212 PRK10419 nikE nickel transport 29.2 1.9E+02 0.0041 23.4 6.0 57 43-99 152-209 (268)
213 PRK09544 znuC high-affinity zi 29.1 2E+02 0.0043 23.2 6.1 57 43-99 121-178 (251)
214 cd08179 NADPH_BDH NADPH-depend 29.1 52 0.0011 28.3 2.8 28 10-37 67-94 (375)
215 cd03262 ABC_HisP_GlnQ_permease 29.0 2.2E+02 0.0048 21.7 6.2 77 15-99 115-192 (213)
216 PRK13652 cbiO cobalt transport 29.0 1.9E+02 0.0042 23.5 6.1 58 42-99 137-195 (277)
217 cd03225 ABC_cobalt_CbiO_domain 28.9 2.2E+02 0.0048 21.7 6.2 57 42-99 134-191 (211)
218 cd04627 CBS_pair_14 The CBS do 28.8 1.6E+02 0.0035 19.9 4.9 32 10-41 84-115 (123)
219 PRK10418 nikD nickel transport 28.7 2E+02 0.0044 22.9 6.1 57 43-99 141-198 (254)
220 cd08190 HOT Hydroxyacid-oxoaci 28.7 57 0.0012 28.6 3.0 28 10-37 66-93 (414)
221 COG2047 Uncharacterized protei 28.7 65 0.0014 27.0 3.1 27 11-37 103-129 (258)
222 PLN02562 UDP-glycosyltransfera 28.6 1.8E+02 0.0039 25.9 6.2 68 2-69 280-375 (448)
223 PRK10908 cell division protein 28.6 2.3E+02 0.005 21.9 6.2 53 45-99 140-194 (222)
224 COG1819 Glycosyl transferases, 28.6 2.6E+02 0.0056 24.5 7.1 56 11-69 252-329 (406)
225 PRK13645 cbiO cobalt transport 28.3 1.9E+02 0.004 23.7 5.9 50 50-99 158-208 (289)
226 cd01715 ETF_alpha The electron 28.2 2.6E+02 0.0056 21.0 7.4 57 43-104 35-95 (168)
227 cd08186 Fe-ADH8 Iron-containin 28.2 66 0.0014 27.8 3.3 26 10-35 70-95 (383)
228 PF04208 MtrA: Tetrahydrometha 28.2 68 0.0015 25.6 3.0 33 1-34 44-77 (176)
229 cd03238 ABC_UvrA The excision 28.1 2.3E+02 0.005 21.8 6.1 54 44-99 89-146 (176)
230 PRK13644 cbiO cobalt transport 28.1 2.1E+02 0.0046 23.2 6.2 49 50-99 144-193 (274)
231 PRK10253 iron-enterobactin tra 28.1 2.1E+02 0.0045 23.0 6.1 56 43-99 144-201 (265)
232 PLN03007 UDP-glucosyltransfera 28.0 1.7E+02 0.0036 26.3 5.9 67 2-68 292-391 (482)
233 PRK09423 gldA glycerol dehydro 28.0 1.2E+02 0.0026 26.0 4.8 26 11-36 71-96 (366)
234 PRK15093 antimicrobial peptide 27.9 2E+02 0.0043 24.3 6.1 81 14-99 134-216 (330)
235 PF02581 TMP-TENI: Thiamine mo 27.9 2.1E+02 0.0046 21.7 5.8 36 53-88 18-53 (180)
236 cd08170 GlyDH Glycerol dehydro 27.8 53 0.0011 27.9 2.6 28 10-37 63-90 (351)
237 PRK11614 livF leucine/isoleuci 27.7 2.3E+02 0.0049 22.2 6.1 49 50-99 145-194 (237)
238 PF09970 DUF2204: Nucleotidyl 27.7 55 0.0012 25.6 2.5 23 11-34 3-25 (181)
239 PRK13642 cbiO cobalt transport 27.7 2.1E+02 0.0045 23.3 6.0 59 41-99 139-198 (277)
240 TIGR03608 L_ocin_972_ABC putat 27.6 2.5E+02 0.0054 21.3 6.2 78 13-99 112-191 (206)
241 cd07038 TPP_PYR_PDC_IPDC_like 27.5 1.3E+02 0.0028 22.8 4.5 57 15-71 2-70 (162)
242 cd06167 LabA_like LabA_like pr 27.5 1.1E+02 0.0024 22.1 4.0 22 16-37 91-112 (149)
243 PRK13546 teichoic acids export 27.5 2.1E+02 0.0046 23.3 6.1 57 42-99 143-200 (264)
244 cd03222 ABC_RNaseL_inhibitor T 27.3 2.6E+02 0.0056 21.6 6.2 50 50-99 79-129 (177)
245 cd02072 Glm_B12_BD B12 binding 27.2 72 0.0016 23.9 2.9 59 11-80 65-126 (128)
246 PF03437 BtpA: BtpA family; I 27.2 2.5E+02 0.0054 23.4 6.4 50 17-67 35-110 (254)
247 COG1979 Uncharacterized oxidor 27.1 57 0.0012 28.9 2.6 25 10-34 71-95 (384)
248 KOG1115|consensus 27.1 21 0.00044 32.4 -0.1 17 21-37 214-230 (516)
249 PRK13409 putative ATPase RIL; 26.9 1.8E+02 0.004 26.9 6.1 59 40-99 451-511 (590)
250 PLN02540 methylenetetrahydrofo 26.8 64 0.0014 30.1 3.1 33 4-36 66-98 (565)
251 PRK13539 cytochrome c biogenes 26.6 2.6E+02 0.0056 21.5 6.2 56 43-99 128-184 (207)
252 TIGR02830 spore_III_AG stage I 26.4 73 0.0016 25.5 3.0 15 91-105 145-159 (186)
253 cd01171 YXKO-related B.subtili 26.3 96 0.0021 24.7 3.8 36 22-65 5-40 (254)
254 PRK13637 cbiO cobalt transport 26.3 2.3E+02 0.0049 23.3 6.1 79 14-99 121-202 (287)
255 cd08185 Fe-ADH1 Iron-containin 26.3 69 0.0015 27.6 3.1 28 10-37 69-96 (380)
256 COG2949 SanA Uncharacterized m 26.2 56 0.0012 27.1 2.3 37 1-37 62-106 (235)
257 COG2910 Putative NADH-flavin r 25.8 1.6E+02 0.0034 24.2 4.8 46 13-58 85-135 (211)
258 cd03251 ABCC_MsbA MsbA is an e 25.7 2.2E+02 0.0048 22.1 5.7 49 48-99 144-194 (234)
259 cd03226 ABC_cobalt_CbiO_domain 25.7 2.8E+02 0.0061 21.1 6.2 78 14-99 105-183 (205)
260 PLN02167 UDP-glycosyltransfera 25.7 1.5E+02 0.0032 26.6 5.1 68 2-69 287-387 (475)
261 cd08187 BDH Butanol dehydrogen 25.7 75 0.0016 27.4 3.2 28 10-37 72-99 (382)
262 cd03217 ABC_FeS_Assembly ABC-t 25.7 2.9E+02 0.0062 21.2 6.3 50 49-99 111-161 (200)
263 TIGR03740 galliderm_ABC gallid 25.6 2.7E+02 0.0059 21.5 6.2 50 49-99 131-181 (223)
264 cd00316 Oxidoreductase_nitroge 25.6 4.1E+02 0.0089 22.4 8.5 64 12-77 167-239 (399)
265 PRK13848 conjugal transfer pro 25.6 1.1E+02 0.0024 22.1 3.4 35 49-92 31-65 (98)
266 TIGR00683 nanA N-acetylneurami 25.5 3.9E+02 0.0085 22.1 8.4 103 10-115 20-153 (290)
267 cd08549 G1PDH_related Glycerol 25.5 1.3E+02 0.0027 25.6 4.5 44 12-68 69-112 (332)
268 PRK14246 phosphate ABC transpo 25.5 2.5E+02 0.0055 22.6 6.1 54 45-100 156-210 (257)
269 cd03218 ABC_YhbG The ABC trans 25.4 2.8E+02 0.006 21.5 6.2 55 45-100 136-191 (232)
270 PRK09493 glnQ glutamine ABC tr 25.4 2.8E+02 0.006 21.7 6.2 51 48-100 142-194 (240)
271 cd03253 ABCC_ATM1_transporter 25.4 2.2E+02 0.0048 22.2 5.6 48 50-99 145-193 (236)
272 PRK13633 cobalt transporter AT 25.4 2.4E+02 0.0051 23.0 6.0 54 45-99 147-202 (280)
273 TIGR01187 potA spermidine/putr 25.3 2.3E+02 0.0049 23.9 6.0 53 14-73 79-131 (325)
274 cd04801 CBS_pair_M50_like This 25.2 2E+02 0.0044 19.0 4.8 31 10-40 75-105 (114)
275 KOG2672|consensus 25.1 70 0.0015 27.8 2.8 30 2-31 130-162 (360)
276 PRK13643 cbiO cobalt transport 25.1 2.5E+02 0.0054 23.1 6.1 77 15-99 123-201 (288)
277 cd08194 Fe-ADH6 Iron-containin 25.1 67 0.0015 27.6 2.8 28 10-37 66-93 (375)
278 PF13277 YmdB: YmdB-like prote 24.7 2.4E+02 0.0051 23.8 5.8 23 13-37 45-67 (253)
279 cd07406 MPP_CG11883_N Drosophi 24.7 2E+02 0.0044 23.2 5.4 61 38-100 120-180 (257)
280 COG3010 NanE Putative N-acetyl 24.7 1.1E+02 0.0024 25.3 3.7 64 66-147 24-87 (229)
281 PRK15079 oligopeptide ABC tran 24.6 2.4E+02 0.0051 24.0 6.0 55 14-74 139-193 (331)
282 cd04614 CBS_pair_1 The CBS dom 24.5 2.1E+02 0.0046 18.8 4.8 31 10-40 57-87 (96)
283 cd03260 ABC_PstB_phosphate_tra 24.5 2.9E+02 0.0062 21.4 6.1 77 14-99 118-197 (227)
284 CHL00131 ycf16 sulfate ABC tra 24.5 2.9E+02 0.0063 21.8 6.2 57 43-100 152-209 (252)
285 cd07366 3MGA_Dioxygenase Subun 24.5 51 0.0011 28.5 1.9 26 11-36 73-98 (328)
286 cd08176 LPO Lactadehyde:propan 24.5 70 0.0015 27.5 2.8 28 10-37 71-98 (377)
287 TIGR01166 cbiO cobalt transpor 24.4 3.1E+02 0.0067 20.6 6.2 56 42-99 127-184 (190)
288 cd00840 MPP_Mre11_N Mre11 nucl 24.3 89 0.0019 23.8 3.1 23 12-35 29-51 (223)
289 PRK11124 artP arginine transpo 24.3 2.9E+02 0.0063 21.7 6.2 52 48-100 147-199 (242)
290 cd03292 ABC_FtsE_transporter F 24.3 3E+02 0.0066 20.9 6.2 55 43-99 137-193 (214)
291 PRK15138 aldehyde reductase; P 24.3 71 0.0015 27.8 2.8 28 10-37 71-98 (387)
292 cd08192 Fe-ADH7 Iron-containin 24.2 72 0.0016 27.3 2.8 28 10-37 67-94 (370)
293 cd08183 Fe-ADH2 Iron-containin 24.2 71 0.0015 27.5 2.8 28 10-37 61-88 (374)
294 cd01972 Nitrogenase_VnfE_like 24.2 4.9E+02 0.011 22.8 9.0 59 11-73 179-249 (426)
295 PRK13636 cbiO cobalt transport 24.1 2.6E+02 0.0056 22.8 6.0 79 14-99 120-199 (283)
296 PRK13651 cobalt transporter AT 24.1 2.6E+02 0.0056 23.4 6.1 54 13-73 142-196 (305)
297 PF09423 PhoD: PhoD-like phosp 24.1 75 0.0016 28.0 2.9 33 11-43 350-382 (453)
298 PRK13649 cbiO cobalt transport 24.0 2.8E+02 0.0061 22.4 6.2 56 43-99 146-202 (280)
299 PRK11153 metN DL-methionine tr 23.9 2.6E+02 0.0056 23.8 6.1 54 14-74 119-172 (343)
300 cd03269 ABC_putative_ATPase Th 23.9 3E+02 0.0066 21.0 6.1 78 14-99 107-185 (210)
301 PRK10624 L-1,2-propanediol oxi 23.8 74 0.0016 27.5 2.8 27 10-36 73-99 (382)
302 TIGR01284 alt_nitrog_alph nitr 23.7 5E+02 0.011 23.1 8.1 27 11-37 212-238 (457)
303 PRK11308 dppF dipeptide transp 23.7 2.4E+02 0.0053 23.8 5.9 81 13-99 131-212 (327)
304 TIGR03873 F420-0_ABC_ATP propo 23.6 2.9E+02 0.0064 21.9 6.1 77 14-99 116-194 (256)
305 TIGR00972 3a0107s01c2 phosphat 23.5 2.9E+02 0.0062 21.8 6.0 80 14-99 119-200 (247)
306 PRK13543 cytochrome c biogenes 23.5 3.2E+02 0.007 21.1 6.2 56 42-99 137-194 (214)
307 cd04590 CBS_pair_CorC_HlyC_ass 23.5 2.2E+02 0.0048 18.6 4.8 31 10-40 72-102 (111)
308 PRK14261 phosphate ABC transpo 23.4 2.9E+02 0.0063 21.9 6.1 54 45-100 152-206 (253)
309 PRK09473 oppD oligopeptide tra 23.1 2.6E+02 0.0057 23.6 6.0 82 13-99 136-219 (330)
310 TIGR02142 modC_ABC molybdenum 23.0 2.7E+02 0.0059 23.7 6.1 32 42-73 131-162 (354)
311 cd07197 nitrilase Nitrilase su 23.0 1.1E+02 0.0025 23.7 3.5 16 55-70 26-41 (253)
312 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 22.9 3.2E+02 0.007 21.3 6.2 57 42-99 142-199 (224)
313 PRK13638 cbiO cobalt transport 22.9 3.1E+02 0.0066 22.1 6.2 56 42-99 136-193 (271)
314 PF04263 TPK_catalytic: Thiami 22.9 1.3E+02 0.0027 22.1 3.5 27 10-36 70-96 (123)
315 PRK11022 dppD dipeptide transp 22.9 2.7E+02 0.0059 23.5 6.0 82 13-99 128-211 (326)
316 PLN02448 UDP-glycosyltransfera 22.8 2.6E+02 0.0055 24.8 6.1 67 2-68 281-369 (459)
317 PRK05670 anthranilate synthase 22.8 82 0.0018 24.2 2.6 18 20-37 39-56 (189)
318 TIGR03771 anch_rpt_ABC anchore 22.7 3.2E+02 0.0069 21.3 6.1 80 13-100 91-171 (223)
319 PF00148 Oxidored_nitro: Nitro 22.7 2.9E+02 0.0064 23.5 6.3 63 11-74 158-229 (398)
320 PRK03359 putative electron tra 22.5 3.7E+02 0.008 22.3 6.6 65 40-108 58-128 (256)
321 PRK13548 hmuV hemin importer A 22.4 3E+02 0.0065 22.0 6.0 78 15-99 114-198 (258)
322 cd03231 ABC_CcmA_heme_exporter 22.4 3.6E+02 0.0078 20.6 6.2 78 14-100 104-183 (201)
323 cd03254 ABCC_Glucan_exporter_l 22.4 2.8E+02 0.0062 21.4 5.7 48 50-99 147-195 (229)
324 PRK10565 putative carbohydrate 22.4 1.2E+02 0.0025 27.7 3.9 38 21-66 250-287 (508)
325 cd03233 ABC_PDR_domain1 The pl 22.3 3.6E+02 0.0077 20.7 6.2 51 49-99 125-176 (202)
326 PRK13541 cytochrome c biogenes 22.3 3.5E+02 0.0077 20.5 6.3 57 42-100 123-181 (195)
327 COG0836 {ManC} Mannose-1-phosp 22.3 4.9E+02 0.011 22.8 7.4 73 12-84 36-132 (333)
328 cd02067 B12-binding B12 bindin 22.2 95 0.002 21.8 2.7 44 11-67 65-109 (119)
329 TIGR02298 HpaD_Fe 3,4-dihydrox 22.2 1.3E+02 0.0029 25.1 4.0 46 56-101 8-57 (282)
330 cd04642 CBS_pair_29 The CBS do 22.1 2.5E+02 0.0054 19.1 4.9 32 10-41 87-118 (126)
331 PRK13641 cbiO cobalt transport 22.1 3.2E+02 0.007 22.3 6.2 57 42-99 145-202 (287)
332 PRK14253 phosphate ABC transpo 22.1 3.4E+02 0.0073 21.4 6.2 48 50-99 153-201 (249)
333 cd01976 Nitrogenase_MoFe_alpha 22.1 5.4E+02 0.012 22.6 8.7 61 10-73 184-254 (421)
334 PLN02764 glycosyltransferase f 22.1 2.6E+02 0.0057 25.1 6.0 67 2-68 264-363 (453)
335 PRK10070 glycine betaine trans 21.9 2.7E+02 0.0059 24.5 6.0 79 14-99 143-222 (400)
336 PF14582 Metallophos_3: Metall 21.9 64 0.0014 27.1 1.9 33 2-34 9-42 (255)
337 PRK11231 fecE iron-dicitrate t 21.8 3.4E+02 0.0073 21.6 6.2 31 43-73 139-169 (255)
338 PRK14247 phosphate ABC transpo 21.8 3.4E+02 0.0073 21.4 6.1 82 14-100 121-203 (250)
339 PRK14251 phosphate ABC transpo 21.8 3.4E+02 0.0074 21.4 6.2 56 42-99 147-203 (251)
340 KOG3857|consensus 21.8 1.1E+02 0.0023 27.5 3.4 28 10-37 113-140 (465)
341 PF07820 TraC: TraC-like prote 21.7 1.3E+02 0.0029 21.5 3.3 35 49-92 30-64 (92)
342 PRK14240 phosphate transporter 21.7 3.4E+02 0.0074 21.4 6.1 55 44-100 148-203 (250)
343 PRK14266 phosphate ABC transpo 21.7 3.4E+02 0.0074 21.4 6.1 50 48-99 152-202 (250)
344 PRK11000 maltose/maltodextrin 21.5 2.6E+02 0.0057 24.1 5.8 54 14-74 112-165 (369)
345 PRK14236 phosphate transporter 21.5 3.2E+02 0.007 22.0 6.1 56 42-99 168-224 (272)
346 PF13684 Dak1_2: Dihydroxyacet 21.5 3.9E+02 0.0085 22.7 6.7 26 11-37 18-43 (313)
347 KOG0173|consensus 21.5 1.9E+02 0.0041 24.6 4.6 56 2-59 105-177 (271)
348 PF02457 DisA_N: DisA bacteria 21.5 1.3E+02 0.0027 22.2 3.3 24 14-37 2-25 (122)
349 cd08550 GlyDH-like Glycerol_de 21.4 86 0.0019 26.7 2.7 28 10-37 63-90 (349)
350 PRK14269 phosphate ABC transpo 21.4 3.5E+02 0.0076 21.3 6.1 56 42-100 142-199 (246)
351 PRK14245 phosphate ABC transpo 21.4 3.4E+02 0.0075 21.4 6.1 56 42-99 146-202 (250)
352 cd03263 ABC_subfamily_A The AB 21.4 3.7E+02 0.008 20.6 6.2 77 14-99 112-189 (220)
353 PF11545 HemeBinding_Shp: Cell 21.4 29 0.00064 27.0 -0.1 12 38-49 119-130 (152)
354 TIGR00674 dapA dihydrodipicoli 21.4 4.6E+02 0.01 21.5 8.6 101 10-115 18-149 (285)
355 PF09587 PGA_cap: Bacterial ca 21.3 1.6E+02 0.0035 23.6 4.2 20 38-57 121-140 (250)
356 PF12687 DUF3801: Protein of u 21.3 1.3E+02 0.0028 24.1 3.5 28 10-37 41-71 (204)
357 TIGR01189 ccmA heme ABC export 21.3 3.7E+02 0.0081 20.4 6.2 49 50-100 135-185 (198)
358 cd00953 KDG_aldolase KDG (2-ke 21.2 88 0.0019 25.9 2.7 101 10-116 19-147 (279)
359 PRK10619 histidine/lysine/argi 21.2 3.6E+02 0.0077 21.4 6.2 78 14-99 130-209 (257)
360 PRK14272 phosphate ABC transpo 21.2 3.6E+02 0.0077 21.2 6.1 48 50-99 156-204 (252)
361 COG1117 PstB ABC-type phosphat 21.1 2.6E+02 0.0056 23.5 5.3 53 44-102 151-208 (253)
362 TIGR02320 PEP_mutase phosphoen 21.1 4.4E+02 0.0096 22.2 6.9 28 54-81 176-203 (285)
363 TIGR00640 acid_CoA_mut_C methy 21.0 93 0.002 23.1 2.5 56 11-81 68-124 (132)
364 PLN02210 UDP-glucosyl transfer 20.9 2.5E+02 0.0055 25.0 5.6 67 2-68 276-370 (456)
365 COG0528 PyrH Uridylate kinase 20.8 4.7E+02 0.01 21.8 6.8 95 14-118 34-151 (238)
366 PRK13631 cbiO cobalt transport 20.7 3.4E+02 0.0073 22.9 6.2 80 13-100 153-234 (320)
367 TIGR03415 ABC_choXWV_ATP choli 20.7 3.1E+02 0.0068 24.0 6.1 79 14-99 143-222 (382)
368 PRK14248 phosphate ABC transpo 20.6 3.7E+02 0.0081 21.5 6.2 51 47-99 169-220 (268)
369 PF02424 ApbE: ApbE family; I 20.6 1.1E+02 0.0024 25.0 3.1 22 13-34 119-141 (254)
370 TIGR00227 ribD_Cterm riboflavi 20.6 1.2E+02 0.0027 23.5 3.3 24 12-35 129-152 (216)
371 TIGR02324 CP_lyasePhnL phospho 20.6 4E+02 0.0087 20.5 6.2 58 40-99 147-206 (224)
372 cd03234 ABCG_White The White s 20.5 3.8E+02 0.0083 20.8 6.1 58 43-101 144-202 (226)
373 PRK13409 putative ATPase RIL; 20.5 3E+02 0.0064 25.5 6.2 27 49-75 219-247 (590)
374 TIGR01501 MthylAspMutase methy 20.4 92 0.002 23.5 2.4 61 11-82 67-130 (134)
375 PRK15056 manganese/iron transp 20.4 3.7E+02 0.008 21.7 6.2 77 15-99 122-199 (272)
376 PRK11264 putative amino-acid A 20.4 3.9E+02 0.0085 21.0 6.2 56 43-99 145-201 (250)
377 cd08198 DHQS-like2 Dehydroquin 20.4 2.4E+02 0.0051 24.8 5.2 47 11-69 83-134 (369)
378 PRK14268 phosphate ABC transpo 20.4 3.8E+02 0.0082 21.4 6.2 56 42-99 154-210 (258)
379 cd00267 ABC_ATPase ABC (ATP-bi 20.4 3.5E+02 0.0075 19.6 6.2 49 51-101 89-139 (157)
380 cd07371 2A5CPDO_AB The alpha a 20.3 1.3E+02 0.0028 24.8 3.5 45 56-100 4-48 (268)
381 PRK13363 protocatechuate 4,5-d 20.3 60 0.0013 28.1 1.5 25 11-35 75-99 (335)
382 PRK14239 phosphate transporter 20.3 3.9E+02 0.0084 21.0 6.2 54 44-99 150-204 (252)
383 cd03369 ABCC_NFT1 Domain 2 of 20.2 3.5E+02 0.0076 20.6 5.8 47 51-100 134-182 (207)
384 TIGR00566 trpG_papA glutamine 20.2 1E+02 0.0022 23.9 2.6 21 17-37 36-56 (188)
385 TIGR03652 FeS_repair_RIC iron- 20.1 49 0.0011 26.4 0.9 23 13-37 8-30 (216)
386 PRK14262 phosphate ABC transpo 20.1 3.9E+02 0.0085 21.0 6.1 54 44-99 148-202 (250)
No 1
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=9e-42 Score=287.52 Aligned_cols=136 Identities=26% Similarity=0.347 Sum_probs=121.5
Q ss_pred CeecCCCCC---CCcHHHHHHHHHHcCCcEEEEEcCCCCe----------------------------------------
Q psy5985 1 MLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGGFEVS---------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~---~e~~~~~~~~L~~~~Id~LvvIGGdgs~---------------------------------------- 37 (153)
+|||||+++ ++.+++++++|++++||+|++||||||+
T Consensus 65 ~LgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~~~ 144 (301)
T TIGR02482 65 ILGTARCPEFKTEEGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALNT 144 (301)
T ss_pred eeccCCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcccCcChhHHHHH
Confidence 589999876 4679999999999999999999999999
Q ss_pred -----------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 38 -----------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 38 -----------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
+||||||||+|||||+++|||+|||+|||||.|++++++++.++ +|+++++++++|||||
T Consensus 145 ~~~~i~~i~~ta~s~~rv~ivEvMGR~~G~lAl~~~la~gad~iliPE~~~~~~~l~~~i~---~r~~~g~~~~iIvvaE 221 (301)
T TIGR02482 145 IIDAVDKIRDTATSHERAFVIEVMGRHAGDLALYSGIATGAEIIIIPEFDYDIDELIQRLK---EQHEAGKKHSIIIVAE 221 (301)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHH---HHHHcCCCeEEEEEeC
Confidence 99999999999999999999999999999999999999998754 4777889999999999
Q ss_pred CCCCCcChHHHHHHHHhhcCCCceeeeeeCCccccCCCCCcc
Q psy5985 101 KCNDNYNTDFIYRLYSEEGKGLFSARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 101 G~~~~~~~~~l~~~~~~e~~~~~~~R~~vLGh~QR~~~p~~~ 142 (153)
|+... ....+++++++ +.++++|.++|||+|||++|++.
T Consensus 222 G~~~~-~~~~l~~~l~~--~~g~~~r~~~lG~~qRgg~ps~~ 260 (301)
T TIGR02482 222 GNIVG-SAKEVAKKIEE--ATGIETRVTVLGHTQRGGSPTAF 260 (301)
T ss_pred CCcCC-cHHHHHHHHHH--hcCCeeEEeecChhhcCCCCCHH
Confidence 94321 24568888765 46899999999999999999975
No 2
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=4.2e-41 Score=285.11 Aligned_cols=133 Identities=26% Similarity=0.392 Sum_probs=121.9
Q ss_pred CeecCCCCC---CCcHHHHHHHHHHcCCcEEEEEcCCCCe----------------------------------------
Q psy5985 1 MLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGGFEVS---------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~---~e~~~~~~~~L~~~~Id~LvvIGGdgs~---------------------------------------- 37 (153)
+|||||+++ ++.+++++++|++++||+|++||||||+
T Consensus 66 ~LgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTIDNDi~gtd~t~Gf~TA~~~~ 145 (317)
T cd00763 66 FLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTIDNDIPGTDYTIGFDTALNTV 145 (317)
T ss_pred eeccCCCCccCCHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEecccccCCCCCCccCCCHHHHHHHH
Confidence 599999976 4679999999999999999999999999
Q ss_pred ----------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Q psy5985 38 ----------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLILRNEK 101 (153)
Q Consensus 38 ----------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG 101 (153)
+||||||||+|||||+++|+|+|||++||||.|++++++++.+++ ++++++++++||||||
T Consensus 146 ~~~i~~i~~ta~s~~rv~ivEvMGR~~G~LA~~~ala~ga~~iliPE~~~~~~~~~~~i~~---~~~~g~~~~vivvaEG 222 (317)
T cd00763 146 VEAIDRIRDTSSSHQRISVVEVMGRHCGDIALAAGIAGGAEFIVIPEAEFDREEVANRIKA---GIERGKKHAIVVVAEG 222 (317)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCCChHHHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHH---HHHcCCCcEEEEEeCC
Confidence 999999999999999999999999999999999999999998653 6777899999999999
Q ss_pred CCCCcChHHHHHHHHhhcCCCceeeeeeCCccccCCCCCc
Q psy5985 102 CNDNYNTDFIYRLYSEEGKGLFSARQNVLAKHDSAYEEEG 141 (153)
Q Consensus 102 ~~~~~~~~~l~~~~~~e~~~~~~~R~~vLGh~QR~~~p~~ 141 (153)
+.+ .+.+++++++ +.++++|.++|||+|||++|++
T Consensus 223 ~~~---~~~l~~~l~~--~~g~~~r~~~lG~~qRgg~p~~ 257 (317)
T cd00763 223 VYD---VDELAKEIEE--ATGFETRATVLGHIQRGGSPTA 257 (317)
T ss_pred CCC---HHHHHHHHHH--HhCCCcceeccchhhcCCCCCh
Confidence 863 5678888876 3689999999999999999998
No 3
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=6.7e-41 Score=284.21 Aligned_cols=134 Identities=28% Similarity=0.374 Sum_probs=122.7
Q ss_pred CeecCCCCC---CCcHHHHHHHHHHcCCcEEEEEcCCCCe----------------------------------------
Q psy5985 1 MLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGGFEVS---------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~---~e~~~~~~~~L~~~~Id~LvvIGGdgs~---------------------------------------- 37 (153)
+|||||+++ ++++++++++|++++||+|++||||||+
T Consensus 67 ~LgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~~ 146 (320)
T PRK03202 67 ILGSARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGTIDNDIAGTDYTIGFDTALNTA 146 (320)
T ss_pred ccccCCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEecccccCCCCCCccCcCHHHHHHHH
Confidence 589999876 4579999999999999999999999999
Q ss_pred ----------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Q psy5985 38 ----------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLILRNEK 101 (153)
Q Consensus 38 ----------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG 101 (153)
+||||||||+|||||+++|||+|||++||||.|++++++++.++ +|+++++++++||+|||
T Consensus 147 ~~~i~~l~~~a~s~~rv~iVEvMGR~~G~LAl~~ala~~a~~iliPE~~~~~~~l~~~i~---~r~~~g~~~~vivvsEg 223 (320)
T PRK03202 147 VEAIDRLRDTASSHERVFIVEVMGRHAGDLALHAGIAGGAEVILIPEVPFDIEELCAKIK---KGRERGKKHAIIVVAEG 223 (320)
T ss_pred HHHHHHHHHHHhccCCEEEEEECCCChHHHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHH---HHHHhcCCcEEEEEeCC
Confidence 99999999999999999999999999999999999999998764 47778899999999999
Q ss_pred CCCCcChHHHHHHHHhhcCCCceeeeeeCCccccCCCCCcc
Q psy5985 102 CNDNYNTDFIYRLYSEEGKGLFSARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 102 ~~~~~~~~~l~~~~~~e~~~~~~~R~~vLGh~QR~~~p~~~ 142 (153)
+.+ .+.++++++++ .++++|.++|||+|||++||+.
T Consensus 224 ~~~---~~~l~~~i~~~--~~~~~r~~~lG~~qRgg~ps~~ 259 (320)
T PRK03202 224 VMP---AEELAKEIEER--TGLETRVTVLGHIQRGGSPTAF 259 (320)
T ss_pred CCC---HHHHHHHHHHH--hCCceEEcccchhhcCCCCCHH
Confidence 976 46788888763 6799999999999999999875
No 4
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=1.5e-40 Score=282.50 Aligned_cols=137 Identities=26% Similarity=0.406 Sum_probs=122.0
Q ss_pred CeecCCCCC-C---CcHHHHHHHHHHcCCcEEEEEcCCCCe---------------------------------------
Q psy5985 1 MLGTKRTLP-E---KKLPQIAAKLKELKIQALLIIGGFEVS--------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~-~---e~~~~~~~~L~~~~Id~LvvIGGdgs~--------------------------------------- 37 (153)
+|||||+++ . +.+++++++|++++||+|++||||||+
T Consensus 67 ~LgtsR~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTIDNDl~gtd~tiGfdTA~~~ 146 (324)
T TIGR02483 67 ILGSSRTNPFKYEEDGDDKIVANLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTIDNDLEATDYTFGFDTAVEI 146 (324)
T ss_pred cccCCCCCccccCHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccCCCCcCCccCcCHHHHHHH
Confidence 589999987 2 579999999999999999999999999
Q ss_pred -----------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 38 -----------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 38 -----------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
+||||||||+|||||+++|||+|||++||||.|++++++++.++ +++++++++++||+||
T Consensus 147 ~~~~i~~i~~ta~S~~r~~ivEvMGR~~G~LAl~~ala~~a~~iliPE~~~~~~~l~~~v~---~~~~~g~~~~vvvvsE 223 (324)
T TIGR02483 147 ATEALDRLHTTAESHHRVMVVEVMGRHAGWIALHSGIAGGADVILIPEIPFDIDSVCEKVR---ERFARGKRFAIVVVAE 223 (324)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEcCCChhHHHHHHHhccCCCEEEecCCCCCHHHHHHHHH---HHHHhCCCceEEEEec
Confidence 99999999999999999999999999999999999999998865 4777889999999999
Q ss_pred CCCCCc--------------------ChHHHHHHHHhhcCCCceeeeeeCCccccCCCCCcc
Q psy5985 101 KCNDNY--------------------NTDFIYRLYSEEGKGLFSARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 101 G~~~~~--------------------~~~~l~~~~~~e~~~~~~~R~~vLGh~QR~~~p~~~ 142 (153)
|+.+.+ .++.+++.+++ +.++++|.++|||+|||++|++.
T Consensus 224 G~~~~~~~~~~~~~~~d~~gh~~~~~~~~~l~~~i~~--~~g~~~r~~~lG~~qRgg~ps~~ 283 (324)
T TIGR02483 224 GAKPKGGEMVVQEGVKDAFGHVRLGGIGNWLAEEIER--RTGIETRATVLGHLQRGGSPSAF 283 (324)
T ss_pred CccccccchhccccccccccCcccCcHHHHHHHHHHH--hcCCcceECCcChhhcCCCCCHH
Confidence 996432 13457777765 46899999999999999999985
No 5
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=4.7e-41 Score=280.69 Aligned_cols=137 Identities=32% Similarity=0.501 Sum_probs=120.0
Q ss_pred CeecCCCCC---CCcHHHHHHHHHHcCCcEEEEEcCCCCe----------------------------------------
Q psy5985 1 MLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGGFEVS---------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~---~e~~~~~~~~L~~~~Id~LvvIGGdgs~---------------------------------------- 37 (153)
+|||||+++ ++.+++++++|++++||+|++||||||+
T Consensus 66 ~lgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~i~vigiPkTIDNDi~gtd~siGf~TA~~~ 145 (282)
T PF00365_consen 66 ILGTSRFKPFKDPEGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFGIPVIGIPKTIDNDIPGTDYSIGFDTAVNY 145 (282)
T ss_dssp TTTBBBSSGGGSHHHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHHSEEEEEEEETTSSCTTSSS-BTHHHHHHH
T ss_pred EeCcccCccccchhhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCceEEEEEeccccCCcCCCCCCcccCchhHH
Confidence 589999986 4568899999999999999999999999
Q ss_pred -----------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 38 -----------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 38 -----------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
+||||||||+|||||+++|+|++||++||||.|++++.+++.+++ ++++++++++|||||
T Consensus 146 ~~~~i~~i~~~a~s~~rv~ivEvmGr~~G~LAl~~ala~~a~~ilipE~~~~~~~~~~~i~~---~~~~~k~~~iVvvsE 222 (282)
T PF00365_consen 146 IAEAIDNIKTTARSHNRVFIVEVMGRNAGWLALAAALATGADLILIPEEPFDLDELLDDIKK---RYERGKRYGIVVVSE 222 (282)
T ss_dssp HHHHHHHHHHHHHHSTEEEEEEESSTTSTHHHHHHHHHHTSSEEEBTTSHHHHHHHHHHHHH---HHHTTSSEEEEEEET
T ss_pred HHHHHHHHHHhhcccCCceEEEeCCCCcCHHHHHHHhccCCCEEEEeccccchHHHHHHhhh---hhcccCceEEEEecc
Confidence 999999999999999999999999999999999999999998764 566778899999999
Q ss_pred CCCC--CcChHHHHHHHHhhcCCCceeeeeeCCccccCCCCCcc
Q psy5985 101 KCND--NYNTDFIYRLYSEEGKGLFSARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 101 G~~~--~~~~~~l~~~~~~e~~~~~~~R~~vLGh~QR~~~p~~~ 142 (153)
|+.. +.+.+.+.++.++ ..++++|.++|||+|||++|+|.
T Consensus 223 G~~~~~~i~~~~~~~~~~~--~~~~~~r~~~lGh~Qrgg~P~~~ 264 (282)
T PF00365_consen 223 GAKDGQPISSEFIKELLEE--GLGFDVRVTILGHLQRGGTPSAF 264 (282)
T ss_dssp TSBSSHBHHHHHHHHHHHH--TTTSEEEEEE-GGGGGTSSHHHH
T ss_pred ccccccccccccccccccc--ccccceeecccchhhcCCCCCHH
Confidence 9987 2334566665443 46899999999999999999984
No 6
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=7.9e-40 Score=281.38 Aligned_cols=137 Identities=24% Similarity=0.327 Sum_probs=120.0
Q ss_pred CeecCCC-CC----------CCcHHHHHHHHHHcCCcEEEEEcCCCCe--------------------------------
Q psy5985 1 MLGTKRT-LP----------EKKLPQIAAKLKELKIQALLIIGGFEVS-------------------------------- 37 (153)
Q Consensus 1 iLgTsR~-~~----------~e~~~~~~~~L~~~~Id~LvvIGGdgs~-------------------------------- 37 (153)
+|||||. .| ++.+++++++|++++||+|++||||||+
T Consensus 73 ~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~ 152 (360)
T PRK14071 73 ILGTTNKGDPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGATEVSI 152 (360)
T ss_pred eeccCCCCCccccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCcccCc
Confidence 5899963 32 2357999999999999999999999999
Q ss_pred -------------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHcCCC
Q psy5985 38 -------------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQ 92 (153)
Q Consensus 38 -------------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~~~i~~i~~~~~~~~~ 92 (153)
+||||||||+|||||+++|+|+|||+|||||.|++++++++.++ ++++++++
T Consensus 153 Gf~TA~~~~~~~id~i~~ta~s~~rv~ivEvMGR~~G~LAl~~~la~ga~~iliPE~~~~~~~l~~~i~---~~~~~~~~ 229 (360)
T PRK14071 153 GFDTAVNIATEALDRLHFTAASHNRVMILEVMGRDAGHIALAAGIAGGADVILIPEIPYTLENVCKKIR---ERQEEGKN 229 (360)
T ss_pred ChhHHHHHHHHHHHHHHhhhcccCCEEEEEECCCCccHHHHHhHhhcCCCEEEECCCCCCHHHHHHHHH---HHHHcCCC
Confidence 99999999999999999999999999999999999999998864 47778899
Q ss_pred eEEEEEeCCCCCC-----------------cChHHHHHHHHhhcCCCceeeeeeCCccccCCCCCcc
Q psy5985 93 RGLILRNEKCNDN-----------------YNTDFIYRLYSEEGKGLFSARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 93 ~~iIvvaEG~~~~-----------------~~~~~l~~~~~~e~~~~~~~R~~vLGh~QR~~~p~~~ 142 (153)
+++||||||+.+. ..++++++.+++ +.++++|.++|||+|||+.||+.
T Consensus 230 ~~iivvsEG~~~~~g~~~~~~d~~g~~~~~~~~~~l~~~i~~--~~g~~~r~~~lG~~qRgg~ps~~ 294 (360)
T PRK14071 230 FCLVVVSEAVRTEEGEQVTKTQALGEDRYGGIGQYLAEQIAE--RTGAETRVTVLGHIQRGGIPSPR 294 (360)
T ss_pred eEEEEEcCCCcccccccccccccccccccCcHHHHHHHHHHH--hcCCCeeEEecChhhcCCCCChH
Confidence 9999999998542 124568887765 47899999999999999999985
No 7
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=2.2e-39 Score=298.97 Aligned_cols=139 Identities=26% Similarity=0.355 Sum_probs=121.9
Q ss_pred CeecCCCCC---CCcHHHHHHHHHHcCCcEEEEEcCCCCe----------------------------------------
Q psy5985 1 MLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGGFEVS---------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~---~e~~~~~~~~L~~~~Id~LvvIGGdgs~---------------------------------------- 37 (153)
+|||||+++ +++++++++||++++||+||+||||||+
T Consensus 71 ~LGTsR~~~f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiP 150 (762)
T cd00764 71 IIGSARCKEFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMV 150 (762)
T ss_pred cccCCCCCcccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEec
Confidence 699999987 4679999999999999999999999997
Q ss_pred ---------------------------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHHH
Q psy5985 38 ---------------------------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQ 78 (153)
Q Consensus 38 ---------------------------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~~ 78 (153)
+||||||||+|||||+++|+|+|||+|||||.|++ ++|.+
T Consensus 151 kTIDNDl~gTD~TiGfdTAl~~i~eaId~i~~tA~Sh~R~fVVEvMGR~~G~LAl~aglA~gAd~ilIPE~p~~-~~~~~ 229 (762)
T cd00764 151 GSIDNDFCGTDMTIGTDSALHRICEVVDAITTTAQSHQRTFVLEVMGRHCGYLALVSGLATGADWIFIPERPPE-DGWED 229 (762)
T ss_pred cceeCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCCCchHHHHHHHhccCCCEEEecCCCCc-hhHHH
Confidence 99999999999999999999999999999999999 55555
Q ss_pred HHH-HHHHHHHcCCCeEEEEEeCCCCC----CcChHHHHHHHHhhcCCCceeeeeeCCccccCCCCCcc
Q psy5985 79 DLY-HMASKMAEGVQRGLILRNEKCND----NYNTDFIYRLYSEEGKGLFSARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 79 ~i~-~i~~~~~~~~~~~iIvvaEG~~~----~~~~~~l~~~~~~e~~~~~~~R~~vLGh~QR~~~p~~~ 142 (153)
++. .+.+++..+++++|||||||+.+ ..+++.+++++++ ++++++|.++|||+|||+.|++.
T Consensus 230 ~i~~~l~~~~~~gk~~~iIVVaEGa~d~~g~~i~~~~l~~~l~~--~~g~d~R~t~LGh~QRGG~Psa~ 296 (762)
T cd00764 230 QMCRRLSEHRSRGKRLNIIIVAEGAIDDQLKPITSEDVKDLVVE--RLGLDTRVTTLGHVQRGGTPSAF 296 (762)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCccccCCCccHHHHHHHHHH--hcCCCeeEeecChhhcCCCCCHH
Confidence 552 34556778899999999999964 2345778888866 47899999999999999999974
No 8
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=3.5e-39 Score=281.81 Aligned_cols=135 Identities=21% Similarity=0.228 Sum_probs=118.6
Q ss_pred CeecCCCCC------CCcHHHHHHHHHHcCCcEEEEEcCCCCe-------------------------------------
Q psy5985 1 MLGTKRTLP------EKKLPQIAAKLKELKIQALLIIGGFEVS------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~------~e~~~~~~~~L~~~~Id~LvvIGGdgs~------------------------------------- 37 (153)
+|||||+++ ++.+++++++|++++||+||+|||||||
T Consensus 74 ~LgssR~~~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~ 153 (416)
T PRK14072 74 ALGSCRYKLKSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCP 153 (416)
T ss_pred EeccCCCCCcccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCC
Confidence 699999875 3579999999999999999999999999
Q ss_pred ----------------------------EEEEEecCCCcCHHHHHHHhh-----cCCCEEEEcCCCCCHHHHHHHHHHHH
Q psy5985 38 ----------------------------FFALKTMGGYCGYLATVAGLA-----GGADAAYIYEEKFSIKDLQQDLYHMA 84 (153)
Q Consensus 38 ----------------------------v~iVEvMGR~aG~LA~~aglA-----~gad~iliPE~~~~~~~l~~~i~~i~ 84 (153)
+||||||||+|||||++||+| +|||+|||||.||++++++++|++
T Consensus 154 GF~TA~~~i~~ai~~l~~D~~~ta~s~Rv~iVEvMGR~aG~LAl~a~lA~~~~~~gad~iliPE~~~~~~~~~~~i~~-- 231 (416)
T PRK14072 154 GFGSAAKYIATSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDDAPHLIYLPERPFDEEKFLADVRA-- 231 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcccCceEEEEEEeCcchhHHHHHHhhccccCCCCccEEEccCCCCCHHHHHHHHHH--
Confidence 899999999999999999999 999999999999999999998764
Q ss_pred HHHHcCCCeEEEEEeCCCCCC---------------------cChHHHHHHHHhhcCCCceeeeeeCCccccCCC--CCc
Q psy5985 85 SKMAEGVQRGLILRNEKCNDN---------------------YNTDFIYRLYSEEGKGLFSARQNVLAKHDSAYE--EEG 141 (153)
Q Consensus 85 ~~~~~~~~~~iIvvaEG~~~~---------------------~~~~~l~~~~~~e~~~~~~~R~~vLGh~QR~~~--p~~ 141 (153)
++++ ++++|||||||+.+. ..++.+++++++ ++++++|+++|||+|||+. ||+
T Consensus 232 -~~~~-~~~~ivvVaEG~~~~~g~~i~e~~~~~D~~gh~~l~g~~~~La~~i~~--~~g~~~R~~~LG~~QRgg~~~ps~ 307 (416)
T PRK14072 232 -IVKR-YGYCVVVVSEGIRDADGKFIAEAGLAEDAFGHAQLGGVAPVLANLIKE--KLGKKVHWAVLDYLQRAARHIASK 307 (416)
T ss_pred -HHHh-CCCeEEEEecCcccccccchhccccccCCCCCcccccHHHHHHHHHHH--HhCCeEEEEeCChhhhCCCCCCCH
Confidence 4444 889999999998421 134568888766 4689999999999999999 764
No 9
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=6.1e-39 Score=296.16 Aligned_cols=142 Identities=54% Similarity=0.792 Sum_probs=133.1
Q ss_pred CeecCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCCCe-------------------------------------------
Q psy5985 1 MLGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFEVS------------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdgs~------------------------------------------- 37 (153)
+|||||+.|++++++++++|++++||+||+||||||+
T Consensus 455 ~LgtsR~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA 534 (745)
T TIGR02478 455 ELGTNRELPGKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTA 534 (745)
T ss_pred ccccCCCCchhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHH
Confidence 6999999776789999999999999999999999999
Q ss_pred ---------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHcC-CCeEE
Q psy5985 38 ---------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEG-VQRGL 95 (153)
Q Consensus 38 ---------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~~~i~~i~~~~~~~-~~~~i 95 (153)
+||||||||+|||||+++|||+|||++||||.|+++++++++++.+.+|++.+ +++.+
T Consensus 535 ~~~~~~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~gad~iliPE~~~~~~~l~~~v~~i~~~~~~~~~~~~i 614 (745)
T TIGR02478 535 LNEITEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLATGADAAYIPEEGISLKDLQEDIEHLKEKFAHGNRAGKL 614 (745)
T ss_pred HHHHHHHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhcCCCEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCceE
Confidence 99999999999999999999999999999999999999999999899899988 78999
Q ss_pred EEEeCCCCCCcChHHHHHHHHhhcCCCceeeeeeCCccccCCCCCcc
Q psy5985 96 ILRNEKCNDNYNTDFIYRLYSEEGKGLFSARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 96 IvvaEG~~~~~~~~~l~~~~~~e~~~~~~~R~~vLGh~QR~~~p~~~ 142 (153)
|+++||+.+.++++.++++++++.+.++++|.++|||+|||+.||+.
T Consensus 615 iv~~Eg~~~~~~~~~l~~~i~~e~~~~~~~R~~~LG~~QRgg~ps~~ 661 (745)
T TIGR02478 615 ILRNENASKNYTTDFIARIISEEAKGRFDARTAVLGHMQQGGSPSPF 661 (745)
T ss_pred EEEeCCCccCCCHHHHHHHHHHHhcCCCceEeccCCccccCCCCCHH
Confidence 99999998778889999999866456899999999999999999985
No 10
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=6.8e-39 Score=273.44 Aligned_cols=137 Identities=28% Similarity=0.415 Sum_probs=121.9
Q ss_pred CeecCCCCC---CCcHHHHHHHHHHcCCcEEEEEcCCCCe----------------------------------------
Q psy5985 1 MLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGGFEVS---------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~---~e~~~~~~~~L~~~~Id~LvvIGGdgs~---------------------------------------- 37 (153)
+|||||+++ ++.+++++++|++++||+|++||||||+
T Consensus 66 ~LgtsR~~~~~~~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~ 145 (338)
T cd00363 66 IIGSARCKEFRTEEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFD 145 (338)
T ss_pred ecccCCCCccCCHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHH
Confidence 589999887 4579999999999999999999999999
Q ss_pred ----------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCC---CHHHHHHHHHHHHHHHHcCCC
Q psy5985 38 ----------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKF---SIKDLQQDLYHMASKMAEGVQ 92 (153)
Q Consensus 38 ----------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~---~~~~l~~~i~~i~~~~~~~~~ 92 (153)
+||||||||+|||||+++|||++||+|||||.|+ +++.+++.+ .+|++++++
T Consensus 146 TA~~~~~~~i~~l~~~a~s~~rv~ivEvMGR~~G~Lal~~ala~~ad~iliPE~~~~~~~~~~~~~~i---~~r~~~~~~ 222 (338)
T cd00363 146 TALKTIVEAIDRIRDTASSHQRTFVVEVMGRHCGDIALEAGLATGADIIFIPEEPAADEWEEEMVDVI---KKRRERGKR 222 (338)
T ss_pred HHHHHHHHHHHHHHHhcccCCCEEEEEECCcCHHHHHHHHHHHhCCCEEEeCCCCCCCCCHHHHHHHH---HHHHHhcCC
Confidence 9999999999999999999999999999999999 788877775 447777899
Q ss_pred eEEEEEeCCCCC----CcChHHHHHHHHhhcCCCceeeeeeCCccccCCCCCcc
Q psy5985 93 RGLILRNEKCND----NYNTDFIYRLYSEEGKGLFSARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 93 ~~iIvvaEG~~~----~~~~~~l~~~~~~e~~~~~~~R~~vLGh~QR~~~p~~~ 142 (153)
+++||||||+.+ ......+++++++ ..++++|.++|||+|||+.|++.
T Consensus 223 ~~vivvsEG~~~~~~~~~~~~~l~~~i~~--~~~~~~r~~~lGy~qRg~~ps~~ 274 (338)
T cd00363 223 HGIVIVAEGAIDFIPKPITEKLLAKLVEE--RLGFDTRATVLGHVQRGGTPTAF 274 (338)
T ss_pred eEEEEEeCCCccccccCchHHHHHHHHHH--HcCCceEEeecCccccCCCCChh
Confidence 999999999972 2345678888876 36899999999999999999874
No 11
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=1.2e-38 Score=294.16 Aligned_cols=137 Identities=24% Similarity=0.343 Sum_probs=119.6
Q ss_pred CeecCCCCC---CCcHHHHHHHHHHcCCcEEEEEcCCCCe----------------------------------------
Q psy5985 1 MLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGGFEVS---------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~---~e~~~~~~~~L~~~~Id~LvvIGGdgs~---------------------------------------- 37 (153)
+|||||+++ ++.+++++++|++++||+||+||||||+
T Consensus 68 ~LGtsR~~~~~~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiP 147 (745)
T TIGR02478 68 IIGTARCKEFRERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLV 147 (745)
T ss_pred eecCCCCCcccCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEc
Confidence 699999987 4568999999999999999999999996
Q ss_pred ---------------------------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCC---HHH
Q psy5985 38 ---------------------------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFS---IKD 75 (153)
Q Consensus 38 ---------------------------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~---~~~ 75 (153)
+||||||||+|||||+++|+|+|||+|||||.|++ +++
T Consensus 148 kTIDNDl~gTd~TiGfdTA~~~i~~aid~i~~ta~Sh~R~fvvEvMGR~~G~LAl~aalA~gad~iliPE~~~~~~~~~~ 227 (745)
T TIGR02478 148 GSIDNDMCGTDMTIGADSALHRICEAIDAISSTAQSHQRAFVVEVMGRHCGYLALMAAIATGADYVFIPERPPEEGWEDQ 227 (745)
T ss_pred cccccCCCCCcCCCCHHHHHHHHHHHHHHHHhhhhccCCEEEEEEcCccccHHHHHHHhccCCCEEEecCCCCCchHHHH
Confidence 99999999999999999999999999999999999 455
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEEeCCCCCC----cChHHHHHHHHhhcCCCceeeeeeCCccccCCCCCcc
Q psy5985 76 LQQDLYHMASKMAEGVQRGLILRNEKCNDN----YNTDFIYRLYSEEGKGLFSARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 76 l~~~i~~i~~~~~~~~~~~iIvvaEG~~~~----~~~~~l~~~~~~e~~~~~~~R~~vLGh~QR~~~p~~~ 142 (153)
+++. +.+++.++++++|||||||+.+. .+.+.+++.+++ ++++++|.++|||+|||+.||+.
T Consensus 228 i~~~---l~~~~~~gk~~~iIvvaEG~~d~~g~~i~~~~l~~~l~~--~~g~~~R~~~LGh~QRgg~Psa~ 293 (745)
T TIGR02478 228 LCHK---LKRNRKAGKRKNIVIVAEGAIDRDLNPITSEDVKDVLVE--RLGLDTRITVLGHVQRGGAPSAY 293 (745)
T ss_pred HHHH---HHHHHHcCCCcEEEEEeCCcccccCCcccHHHHHHHHHH--hcCCceEEeecChhhcCCCCCHH
Confidence 5544 33456778999999999999543 345788888865 46899999999999999999974
No 12
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=2.1e-38 Score=275.57 Aligned_cols=136 Identities=20% Similarity=0.217 Sum_probs=116.4
Q ss_pred CeecCCCCC---------------CCcHHHHHHHHHHcCCcEEEEEcCCCCe----------------------------
Q psy5985 1 MLGTKRTLP---------------EKKLPQIAAKLKELKIQALLIIGGFEVS---------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~---------------~e~~~~~~~~L~~~~Id~LvvIGGdgs~---------------------------- 37 (153)
+|||||+++ ++.+++++++|++++||+|++||||||+
T Consensus 74 ~LGtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDN 153 (403)
T PRK06555 74 PIGNSRVKLTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDN 153 (403)
T ss_pred eeccCCCCccccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeC
Confidence 699999876 2358999999999999999999999998
Q ss_pred -----------------------------------EEEEEecCCCcCHHHHHHHhh--------------------cCCC
Q psy5985 38 -----------------------------------FFALKTMGGYCGYLATVAGLA--------------------GGAD 62 (153)
Q Consensus 38 -----------------------------------v~iVEvMGR~aG~LA~~aglA--------------------~gad 62 (153)
++|||||||+|||||+++|+| +|||
T Consensus 154 Dl~~td~t~Gf~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~gad 233 (403)
T PRK06555 154 DVVPIRQSLGAWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIH 233 (403)
T ss_pred CCCCccCCcCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCCCCc
Confidence 555699999999999999999 7999
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCc--------------------------ChHHHHHHHH
Q psy5985 63 AAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLILRNEKCNDNY--------------------------NTDFIYRLYS 116 (153)
Q Consensus 63 ~iliPE~~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG~~~~~--------------------------~~~~l~~~~~ 116 (153)
+|||||.||+++++++.+++ ++++ +++++||||||+.... .+..+++.++
T Consensus 234 ~ilIPE~~~~~e~~~~~ik~---~~~~-k~~~iIvVaEG~~~~~~~~~~~~~g~~~~~Da~G~~~l~~~~~g~~la~~i~ 309 (403)
T PRK06555 234 AVYLPEMAFDLEAEAERLKA---VMDE-VGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTINPGAWFAKQFA 309 (403)
T ss_pred EEEccCCCCCHHHHHHHHHH---HHHh-CCCEEEEEeCCCCcccchhhhhhccCccccccccceecCCCcHHHHHHHHHH
Confidence 99999999999999988654 4555 8999999999985311 2456888776
Q ss_pred hhcCCCce-eeeeeCCccccCCCCCcc
Q psy5985 117 EEGKGLFS-ARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 117 ~e~~~~~~-~R~~vLGh~QR~~~p~~~ 142 (153)
+ +++.+ +|.++|||+|||++|++.
T Consensus 310 ~--~~g~e~~r~~~lGy~qRgg~psa~ 334 (403)
T PRK06555 310 E--LLGAEKVMVQKSGYFARSAPANAE 334 (403)
T ss_pred H--HhCCCceEEecCChhhcCCCCCHH
Confidence 5 46786 999999999999999864
No 13
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-38 Score=269.65 Aligned_cols=138 Identities=30% Similarity=0.385 Sum_probs=114.5
Q ss_pred CeecCCCCC---CCcHHHHHHHHHHcCCcEEEEEcCCCCe----------------------------------------
Q psy5985 1 MLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGGFEVS---------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~---~e~~~~~~~~L~~~~Id~LvvIGGdgs~---------------------------------------- 37 (153)
+|||||+++ ++.++++++||++++||+||+||||||+
T Consensus 68 ~lgssR~~~~~~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~~ 147 (347)
T COG0205 68 FLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALET 147 (347)
T ss_pred EEeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHHH
Confidence 589999987 6789999999999999999999999998
Q ss_pred -----------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCH--HHHHHHHHHHHHHHHcCCCeEEEEE
Q psy5985 38 -----------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSI--KDLQQDLYHMASKMAEGVQRGLILR 98 (153)
Q Consensus 38 -----------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~--~~l~~~i~~i~~~~~~~~~~~iIvv 98 (153)
+||||||||+|||||++||+|+|||+|++||.++++ ++++..++. ++...++++++|++
T Consensus 148 ~~eaid~l~dtassh~r~~iveVMGR~aG~lAl~aglA~~a~~ilipE~~~~~~i~~~~~~i~~--~~~~~gk~~~iIvv 225 (347)
T COG0205 148 AVEAIDNLRDTASSHERIFIVEVMGRHAGWLALAAGLATGADIILIPEEPADLIIEELIAEIKA--KREARGKKHAIIVV 225 (347)
T ss_pred HHHHHHHHHHHHhCcCCEEEEEecCcChhHHHHHHHHhcCCCEEEecCccccchHHHHHHHHHH--HHHHhCCCceEEEE
Confidence 999999999999999999999999999999999977 777776543 23347899999999
Q ss_pred eCCCCCCc---ChHHHHHHHHhhcCCC-ceeeeeeCCccccCCCCCc
Q psy5985 99 NEKCNDNY---NTDFIYRLYSEEGKGL-FSARQNVLAKHDSAYEEEG 141 (153)
Q Consensus 99 aEG~~~~~---~~~~l~~~~~~e~~~~-~~~R~~vLGh~QR~~~p~~ 141 (153)
+||+.... ..+.... +.+....+ +++|.++|||+|||+.|++
T Consensus 226 aEG~~~~~~~~~~~~~~~-i~~~~~~~~~~~r~t~LGhiqRgg~p~~ 271 (347)
T COG0205 226 AEGAIDQIGENGAELLAA-IEELLALGDFETRVTVLGHIQRGGTPSA 271 (347)
T ss_pred ccccccccccchhhHHHH-HHHHhhhcccceEEEeccccccCCCCch
Confidence 99997642 1222222 22211111 8999999999999999997
No 14
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=1.3e-38 Score=293.92 Aligned_cols=138 Identities=49% Similarity=0.809 Sum_probs=121.4
Q ss_pred CeecCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCCCe-------------------------------------------
Q psy5985 1 MLGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFEVS------------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdgs~------------------------------------------- 37 (153)
+|||+|++|++++++++++|++++||+|++|||||||
T Consensus 455 ~LGT~R~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTA 534 (762)
T cd00764 455 ELGTKRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTA 534 (762)
T ss_pred cccccCCCcHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHH
Confidence 6999999987899999999999999999999999998
Q ss_pred ---------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHc----CCC
Q psy5985 38 ---------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAE----GVQ 92 (153)
Q Consensus 38 ---------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~~~i~~i~~~~~~----~~~ 92 (153)
+||||||||+|||||+++|||+|||++||||.|++++++.++++++.+++++ ++.
T Consensus 535 ln~~~~~id~i~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~GAd~i~iPE~~~~~~~l~~dv~~l~~~~~~~~~~g~~ 614 (762)
T cd00764 535 LNALMKYCDRIKQSASGTKRRVFIVETMGGYCGYLATMTGLAVGADAAYVFEEPFNIRDLQENVEHLTEKMKTTIGRGLV 614 (762)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEEeCCCCccHHHHHHHhhcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 9999999999999999999999999999999999999999888777666654 455
Q ss_pred eEEEEEeCCCCCCcChHHHHHHHHhhcCCCceeeeeeCCccccCCCCCcc
Q psy5985 93 RGLILRNEKCNDNYNTDFIYRLYSEEGKGLFSARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 93 ~~iIvvaEG~~~~~~~~~l~~~~~~e~~~~~~~R~~vLGh~QR~~~p~~~ 142 (153)
+.++++|||+.. ..+++++.++.+.+|++|.++|||+||||.|||+
T Consensus 615 ~~~~~~se~~~~----~~~~~~~~~~~~~~~~~R~~vLGh~QrGG~Ps~~ 660 (762)
T cd00764 615 LRNEKCNENYTT----VFTYELYSEEGKGVFDCRTNVLGHVQQGGAPSPF 660 (762)
T ss_pred EeeeeeecCCcc----ccHHHHHHHHHhcCCceEecccccccCCCCCCHH
Confidence 688999999742 3455555544456899999999999999999986
No 15
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=1.5e-37 Score=271.19 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=116.1
Q ss_pred CeecCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCCCe-------------------------------------------
Q psy5985 1 MLGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFEVS------------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdgs~------------------------------------------- 37 (153)
+|||||+++ .+++++++|++++||+||+|||||||
T Consensus 122 ~LGtsR~~~--~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv 199 (411)
T PLN02884 122 LLGVSRGGA--KTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAV 199 (411)
T ss_pred eeccCCCCc--cHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHH
Confidence 699999996 68999999999999999999999998
Q ss_pred --------------------EEEEEecCCCcCHHHHHHHhhcC-CCEEEEcCCCCCH---HHHHHHHHHHHHHHHcCCCe
Q psy5985 38 --------------------FFALKTMGGYCGYLATVAGLAGG-ADAAYIYEEKFSI---KDLQQDLYHMASKMAEGVQR 93 (153)
Q Consensus 38 --------------------v~iVEvMGR~aG~LA~~aglA~g-ad~iliPE~~~~~---~~l~~~i~~i~~~~~~~~~~ 93 (153)
+||||||||+|||||+++|||+| ||+|||||.||++ +++++.++ ++++ ++++
T Consensus 200 ~~~~~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aalA~g~ad~ilIPE~~f~~~~~~~~~~~i~---~~~~-~k~~ 275 (411)
T PLN02884 200 EEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLASGQVDICLIPEVPFTLDGPNGVLRHLE---HLIE-TKGS 275 (411)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHHhcCCCCEEEeCCCCCCcccHHHHHHHHH---HHHh-cCCc
Confidence 99999999999999999999999 9999999999999 67776654 3555 7899
Q ss_pred EEEEEeCCCCCC-----------------cChHHHHHHHHhh---cCCCceeeeeeCCccccCCCCCcc
Q psy5985 94 GLILRNEKCNDN-----------------YNTDFIYRLYSEE---GKGLFSARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 94 ~iIvvaEG~~~~-----------------~~~~~l~~~~~~e---~~~~~~~R~~vLGh~QR~~~p~~~ 142 (153)
++||||||+... ..+..+++.+++. ...++++|+++|||+|||+.|++.
T Consensus 276 ~iIVVAEG~g~~~~~~~~~~Da~G~~~l~~~~~~La~~i~~~~~~~g~~~~~r~~~lGy~qRgg~p~a~ 344 (411)
T PLN02884 276 AVVCVAEGAGQDLLQKTNATDASGNPVLGDIGVHLQQEIKKHFKDIGVPADVKYIDPTYMIRACRANAS 344 (411)
T ss_pred EEEEEecccccccccccccccccCCcccCcHHHHHHHHHHHHhhccCCCceEEEccCCccccCCCCCHH
Confidence 999999998421 1234677777642 113569999999999999999874
No 16
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=7.3e-37 Score=270.64 Aligned_cols=139 Identities=20% Similarity=0.224 Sum_probs=116.3
Q ss_pred CeecCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCCCe-------------------------------------------
Q psy5985 1 MLGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFEVS------------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdgs~------------------------------------------- 37 (153)
+|||||+++ ++++++++|++++||+|++||||||+
T Consensus 155 iLGTsR~~~--~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv 232 (484)
T PLN02564 155 ILGTSRGGH--DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV 232 (484)
T ss_pred eeccCCCcc--hHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHH
Confidence 699999974 78999999999999999999999999
Q ss_pred --------------------EEEEEecCCCcCHHHHHHHhhc-CCCEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy5985 38 --------------------FFALKTMGGYCGYLATVAGLAG-GADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLI 96 (153)
Q Consensus 38 --------------------v~iVEvMGR~aG~LA~~aglA~-gad~iliPE~~~~~~~l~~~i~~i~~~~~~~~~~~iI 96 (153)
+||||||||+|||||++||||+ |||+|||||.||+++...+.++.+.+|+++ ++++||
T Consensus 233 ~~~~~aI~~i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~-~~~~VI 311 (484)
T PLN02564 233 EEAQRAINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKE-NGHMVI 311 (484)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhc-cCCEEE
Confidence 9999999999999999999999 799999999999999443334445567776 789999
Q ss_pred EEeCCCCCC---------------------cChHHHHHHHHhh----cCCCceeeeeeCCccccCCCCCcc
Q psy5985 97 LRNEKCNDN---------------------YNTDFIYRLYSEE----GKGLFSARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 97 vvaEG~~~~---------------------~~~~~l~~~~~~e----~~~~~~~R~~vLGh~QR~~~p~~~ 142 (153)
|||||+... ..+.++++.+++. ...++++|+++|||+|||+.|++.
T Consensus 312 VVAEGagq~~~~~~~~~~~~~Da~Gn~~l~dig~~La~~I~~~~~~~~~~~~~~r~i~lgy~qRgg~p~a~ 382 (484)
T PLN02564 312 VVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKKMPINLKYIDPTYMIRAIPSNAS 382 (484)
T ss_pred EEeCCCccchhhhhhcccccccccCCcccCcHHHHHHHHHHHHhhhcccCCceEEEecCCchhcCCCCcHH
Confidence 999999431 1234566666542 223689999999999999999874
No 17
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=6.5e-36 Score=262.78 Aligned_cols=139 Identities=20% Similarity=0.202 Sum_probs=115.4
Q ss_pred CeecCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCCCe-------------------------------------------
Q psy5985 1 MLGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFEVS------------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdgs~------------------------------------------- 37 (153)
+|||||.++ ++++++++|++++||+|++|||||||
T Consensus 151 iLGTsR~~~--~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv 228 (443)
T PRK06830 151 ILGSSRGPQ--DPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAV 228 (443)
T ss_pred cccCCCCch--hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHH
Confidence 699999873 78999999999999999999999999
Q ss_pred --------------------EEEEEecCCCcCHHHHHHHhhc-CCCEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy5985 38 --------------------FFALKTMGGYCGYLATVAGLAG-GADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLI 96 (153)
Q Consensus 38 --------------------v~iVEvMGR~aG~LA~~aglA~-gad~iliPE~~~~~~~l~~~i~~i~~~~~~~~~~~iI 96 (153)
+||||+|||+|||||++||||+ +||+|||||.||+++...+.++.+.+|+++ +++++|
T Consensus 229 ~~a~~aI~~~~~eA~s~~~rv~iVEvMGR~sG~lA~~aaLA~~~ad~ilIPE~~f~l~~~~~ll~~l~~r~~~-~~~~VI 307 (443)
T PRK06830 229 EKATEAIRCAHVEANGAPNGIGLVKLMGRHSGFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAE-RGHAVI 307 (443)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEECCCcccHHHHHHHHhcCCCCEEEecCCCCCchhHHHHHHHHHHHHHh-CCceEE
Confidence 9999999999999999999999 799999999999999444444445556665 899999
Q ss_pred EEeCCCCCC-----------------cChHHHHHHHHhhc-CCC--ceeeeeeCCccccCCCCCcc
Q psy5985 97 LRNEKCNDN-----------------YNTDFIYRLYSEEG-KGL--FSARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 97 vvaEG~~~~-----------------~~~~~l~~~~~~e~-~~~--~~~R~~vLGh~QR~~~p~~~ 142 (153)
|||||+... ..+..+++.+++.- ..+ +++|.+.|||+|||+.|++.
T Consensus 308 VVAEGag~~l~~~~~~~Da~gn~~l~~ig~~L~~~i~~~~~~~~~~~~~r~~~pgy~qRg~~psa~ 373 (443)
T PRK06830 308 VVAEGAGQELFDDTGETDASGNPKLGDIGLFLKDRIKEYFKARGIPINLKYIDPSYIIRSVPANAN 373 (443)
T ss_pred EEecCcccccccccccccccCCcccccHHHHHHHHHHHHhcccCCceEEEEccCCccccCCCCCHH
Confidence 999999531 12355666665421 124 68999999999999999874
No 18
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=6.1e-36 Score=263.97 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=116.0
Q ss_pred CeecCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCCCe-------------------------------------------
Q psy5985 1 MLGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFEVS------------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdgs~------------------------------------------- 37 (153)
+|||||++ .++++++++|++++||+|++||||||+
T Consensus 155 iLGTSR~~--~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv 232 (459)
T PTZ00286 155 ILGSSRGG--FDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAV 232 (459)
T ss_pred eeccCCCh--hhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHH
Confidence 69999988 479999999999999999999999999
Q ss_pred --------------------EEEEEecCCCcCHHHHHHHhhcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy5985 38 --------------------FFALKTMGGYCGYLATVAGLAGG-ADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLI 96 (153)
Q Consensus 38 --------------------v~iVEvMGR~aG~LA~~aglA~g-ad~iliPE~~~~~~~l~~~i~~i~~~~~~~~~~~iI 96 (153)
+||||+|||+|||||+++|||++ ||+|||||.||+++++++.+++ |++ ++++++|
T Consensus 233 ~~~~~aI~~~~~eA~S~~~~v~iVEvMGR~sG~LAl~aaLA~~~ad~vlIPE~~f~l~~ll~~l~~---r~~-~~~~~VI 308 (459)
T PTZ00286 233 EEAQNAIRAAYVEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFDIPLEGVLEYIEQ---RLQ-KKGHCVI 308 (459)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEecCcchhHHHHHHhhhhcCCCEEEeCCCCCCHHHHHHHHHH---HHh-cCCcEEE
Confidence 99999999999999999999996 9999999999999999888643 565 4889999
Q ss_pred EEeCCCCCC-------------------cChHHHHHHHHh---hcCCCceeeeeeCCccccCCCCCcc
Q psy5985 97 LRNEKCNDN-------------------YNTDFIYRLYSE---EGKGLFSARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 97 vvaEG~~~~-------------------~~~~~l~~~~~~---e~~~~~~~R~~vLGh~QR~~~p~~~ 142 (153)
|||||+.+. ..+.++++.+++ +...++++|.++|||+|||+.|++.
T Consensus 309 VVaEGa~~~~~~~~~~~~~D~~Gn~~l~dig~~L~~~I~~~~~~~~~~~~~r~~~~gy~qRg~~psa~ 376 (459)
T PTZ00286 309 VVAEGAGQSLKDADLDLGTDASGNKKLWDIGVYLKDEITKYLKKKKPEHTVKYIDPSYMIRAVPANAA 376 (459)
T ss_pred EEecCCccccccccccccccccCCcccccHHHHHHHHHHHHHhhccCceEEEEecCCccccCCCCCHH
Confidence 999999642 113345544433 1235789999999999999999874
No 19
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=99.97 E-value=1e-30 Score=234.52 Aligned_cols=104 Identities=25% Similarity=0.371 Sum_probs=95.3
Q ss_pred CeecCCCCC--CCcHHHHHHHHHHcCCcEEEEEcCCCCe-----------------------------------------
Q psy5985 1 MLGTKRTLP--EKKLPQIAAKLKELKIQALLIIGGFEVS----------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~--~e~~~~~~~~L~~~~Id~LvvIGGdgs~----------------------------------------- 37 (153)
+|||||++. ++++++++++|++++||+||+||||||+
T Consensus 136 ~LGssR~k~~~~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GF 215 (539)
T TIGR02477 136 IIGSGRTKIETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGF 215 (539)
T ss_pred hhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCH
Confidence 599999886 6789999999999999999999999998
Q ss_pred ------------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCC----CHHHHHHHH-HHHHHHHH
Q psy5985 38 ------------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKF----SIKDLQQDL-YHMASKMA 88 (153)
Q Consensus 38 ------------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~----~~~~l~~~i-~~i~~~~~ 88 (153)
+||||||||+|||||+++|||++||+|||||+++ +++++.+.| +.+.+|..
T Consensus 216 dTA~~~~~~~I~~i~~Da~s~~~~~~~VevMGR~aG~LAl~~aLat~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~ 295 (539)
T TIGR02477 216 DTACKIYSELIGNICRDALSAKKYWHFIRLMGRSASHIALECALQTHPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAA 295 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999986 888877777 46777888
Q ss_pred cCCCeEEEEEeCCCCC
Q psy5985 89 EGVQRGLILRNEKCND 104 (153)
Q Consensus 89 ~~~~~~iIvvaEG~~~ 104 (153)
+++++++|+||||+.+
T Consensus 296 ~gk~~gvIvvsEGlie 311 (539)
T TIGR02477 296 KGKNFGVILIPEGLIE 311 (539)
T ss_pred cCCCCEEEEEeCCchh
Confidence 8999999999999943
No 20
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=99.97 E-value=2.8e-30 Score=232.34 Aligned_cols=104 Identities=30% Similarity=0.424 Sum_probs=96.7
Q ss_pred CeecCCCCC--CCcHHHHHHHHHHcCCcEEEEEcCCCCe-----------------------------------------
Q psy5985 1 MLGTKRTLP--EKKLPQIAAKLKELKIQALLIIGGFEVS----------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~--~e~~~~~~~~L~~~~Id~LvvIGGdgs~----------------------------------------- 37 (153)
+|||||++. ++++++++++|++++||+||+||||||+
T Consensus 139 ~LGssR~k~~~~e~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GF 218 (555)
T PRK07085 139 MIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGF 218 (555)
T ss_pred hhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCH
Confidence 599999886 5789999999999999999999999998
Q ss_pred ------------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCC----CCCHHHHHHHHH-HHHHHHH
Q psy5985 38 ------------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEE----KFSIKDLQQDLY-HMASKMA 88 (153)
Q Consensus 38 ------------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~----~~~~~~l~~~i~-~i~~~~~ 88 (153)
+||||||||+|||||+++|||++||+|||||+ +++++++.+.|. .+.+|..
T Consensus 219 dTA~~~~~~~I~~i~~Da~s~~~~~~~VevMGR~aG~LAl~~aLat~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~ 298 (555)
T PRK07085 219 DTATKTYSEMIGNISRDALSAKKYWHFIKLMGRSASHIALECALQTHPNICLISEEVAEKKMSLQDIVHYIASVIADRAA 298 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEEECCCChHHHHHHHHHhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 889999888884 6778888
Q ss_pred cCCCeEEEEEeCCCCC
Q psy5985 89 EGVQRGLILRNEKCND 104 (153)
Q Consensus 89 ~~~~~~iIvvaEG~~~ 104 (153)
+++++++|+||||+.+
T Consensus 299 ~gk~~gvIvvsEGlie 314 (555)
T PRK07085 299 KGKNYGVILIPEGLIE 314 (555)
T ss_pred cCCCeEEEEEeCCchh
Confidence 8999999999999964
No 21
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=99.97 E-value=8e-30 Score=229.60 Aligned_cols=102 Identities=21% Similarity=0.332 Sum_probs=94.0
Q ss_pred CeecCCCCC--CCcHHHHHHHHHHcCCcEEEEEcCCCCe-----------------------------------------
Q psy5985 1 MLGTKRTLP--EKKLPQIAAKLKELKIQALLIIGGFEVS----------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~--~e~~~~~~~~L~~~~Id~LvvIGGdgs~----------------------------------------- 37 (153)
+|||+|++. ++++++++++|++++||+||+||||||+
T Consensus 165 lLGS~R~k~~~~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GF 244 (568)
T PLN02251 165 MICSGRDKIETPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGF 244 (568)
T ss_pred EecccCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCH
Confidence 489999865 6789999999999999999999999998
Q ss_pred ------------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCC----CCCHHHHHHHH-HHHHHHHH
Q psy5985 38 ------------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEE----KFSIKDLQQDL-YHMASKMA 88 (153)
Q Consensus 38 ------------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~----~~~~~~l~~~i-~~i~~~~~ 88 (153)
++|||||||+|||||+.+|||++||+|||||+ +.+++++.+.| +.+.+|..
T Consensus 245 dTA~k~~a~~I~ni~~da~S~~k~~~~VevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~ 324 (568)
T PLN02251 245 DTACKIYSEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAE 324 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCEEEEEEeCCCchHHHHHHHHHhhCCCEEEecCccccccCCHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999 78888888877 46777888
Q ss_pred cCCCeEEEEEeCCC
Q psy5985 89 EGVQRGLILRNEKC 102 (153)
Q Consensus 89 ~~~~~~iIvvaEG~ 102 (153)
+++++++|+++||+
T Consensus 325 ~gk~~gvIlVsEGl 338 (568)
T PLN02251 325 LGYNYGVILIPEGL 338 (568)
T ss_pred cCCCcEEEEEeCCc
Confidence 89999999999999
No 22
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=99.97 E-value=5.5e-30 Score=230.07 Aligned_cols=104 Identities=24% Similarity=0.336 Sum_probs=95.2
Q ss_pred CeecCCCCC--CCcHHHHHHHHHHcCCcEEEEEcCCCCe-----------------------------------------
Q psy5985 1 MLGTKRTLP--EKKLPQIAAKLKELKIQALLIIGGFEVS----------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~--~e~~~~~~~~L~~~~Id~LvvIGGdgs~----------------------------------------- 37 (153)
+|||+|++. ++++++++++|++++||+||+||||||+
T Consensus 141 ~LGs~R~k~~~~e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GF 220 (550)
T cd00765 141 MICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGF 220 (550)
T ss_pred hhcCcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCH
Confidence 589999886 5689999999999999999999999998
Q ss_pred ------------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCC----CHHHHHHHH-HHHHHHHH
Q psy5985 38 ------------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKF----SIKDLQQDL-YHMASKMA 88 (153)
Q Consensus 38 ------------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~----~~~~l~~~i-~~i~~~~~ 88 (153)
++|||||||+|||||+.+|||++||+|||||.++ +++++.+.| +.+.+|..
T Consensus 221 dTA~k~~a~~I~ni~~Da~s~~~~~~~VEvMGR~aG~LAl~~aLat~p~lilIpE~~~~~~~~L~~v~~~I~~~i~~r~~ 300 (550)
T cd00765 221 DTATKIYSELIGNVMRDARSTGKYWHFVKLMGRSASHIALECALKTHPNICIISEEVSAQKQTLKNITDYMVDVICKRAE 300 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCchHHHHHHHHHhcCCCEEEecCcccccccCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998 777777776 45667888
Q ss_pred cCCCeEEEEEeCCCCC
Q psy5985 89 EGVQRGLILRNEKCND 104 (153)
Q Consensus 89 ~~~~~~iIvvaEG~~~ 104 (153)
+++++++|+||||+.+
T Consensus 301 ~gk~~gvIvVsEGlie 316 (550)
T cd00765 301 LGYNFGVVLVPEGLIE 316 (550)
T ss_pred cCCCcEEEEEeCCchh
Confidence 8999999999999976
No 23
>PTZ00287 6-phosphofructokinase; Provisional
Probab=99.96 E-value=1.6e-28 Score=235.70 Aligned_cols=104 Identities=24% Similarity=0.336 Sum_probs=95.5
Q ss_pred CeecCCCCC--CCcHHHHHHHHHHcCCcEEEEEcCCCCe-----------------------------------------
Q psy5985 1 MLGTKRTLP--EKKLPQIAAKLKELKIQALLIIGGFEVS----------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~--~e~~~~~~~~L~~~~Id~LvvIGGdgs~----------------------------------------- 37 (153)
+|||+|.+. ++++++++++|++++||+||+||||||+
T Consensus 246 iLGSgR~k~~~~e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GF 325 (1419)
T PTZ00287 246 MLWSGRGKVRNKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGF 325 (1419)
T ss_pred HhhCCCCCCCCHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCH
Confidence 589999876 5789999999999999999999999998
Q ss_pred ------------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCC----CCCHHHHHHHH-HHHHHHHH
Q psy5985 38 ------------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEE----KFSIKDLQQDL-YHMASKMA 88 (153)
Q Consensus 38 ------------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~----~~~~~~l~~~i-~~i~~~~~ 88 (153)
+||||||||+|||||+++|||+|||+|||||+ +++++++.++| +.+.+|..
T Consensus 326 DTA~n~iae~I~ni~~D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAtgAdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~ 405 (1419)
T PTZ00287 326 DTATKTYSEVIGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQTRPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRS 405 (1419)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCeEEEEEECCCcchHHHHHHHHhcCCCEEEecCcccccCCCHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999996 78899988887 46777888
Q ss_pred cCCCeEEEEEeCCCCC
Q psy5985 89 EGVQRGLILRNEKCND 104 (153)
Q Consensus 89 ~~~~~~iIvvaEG~~~ 104 (153)
.+++++||+||||+.+
T Consensus 406 ~gk~~gVIvVsEGlie 421 (1419)
T PTZ00287 406 LNKNYGVILIPEGLIE 421 (1419)
T ss_pred cCCCcEEEEEeCCcch
Confidence 8999999999999976
No 24
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=99.95 E-value=9.3e-28 Score=217.69 Aligned_cols=104 Identities=20% Similarity=0.367 Sum_probs=88.7
Q ss_pred CeecCCCCC--CCcHHHHHHHHHHcCCcEEEEEcCCCCe-----------------------------------------
Q psy5985 1 MLGTKRTLP--EKKLPQIAAKLKELKIQALLIIGGFEVS----------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~--~e~~~~~~~~L~~~~Id~LvvIGGdgs~----------------------------------------- 37 (153)
+|||+|.+. ++++++++++|++++||+||+||||||+
T Consensus 148 iLGSsR~~l~~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~s~GF 227 (610)
T PLN03028 148 LLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGF 227 (610)
T ss_pred hccCcCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCCCcCH
Confidence 589999654 5789999999999999999999999998
Q ss_pred ------------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCC----CCHHHHHHHH-HHHHHHHH
Q psy5985 38 ------------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEK----FSIKDLQQDL-YHMASKMA 88 (153)
Q Consensus 38 ------------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~----~~~~~l~~~i-~~i~~~~~ 88 (153)
+||||||||+|||||+++|||++||+|+|||+. .++.++.+.+ +.+.+|++
T Consensus 228 dTA~k~~ae~I~ni~~dA~S~~~~~~~VevMGR~aG~LAl~~aLat~pniilI~EE~~~~~~tL~~iv~~i~~~I~~r~~ 307 (610)
T PLN03028 228 DTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECALQSHPNMVILGEEVAASKLTLFDITKQICDAVQARAE 307 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCeEEEEEeCCcchHHHHHHHHHhcCCCEEEecCcccccccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999864 3334443333 33556777
Q ss_pred cCCCeEEEEEeCCCCC
Q psy5985 89 EGVQRGLILRNEKCND 104 (153)
Q Consensus 89 ~~~~~~iIvvaEG~~~ 104 (153)
+++++++|+||||+.+
T Consensus 308 ~gk~~gvIvVsEGlie 323 (610)
T PLN03028 308 QDKNHGVILIPEGLIE 323 (610)
T ss_pred cCCCcEEEEEeCCccc
Confidence 8999999999999974
No 25
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=228.03 Aligned_cols=103 Identities=19% Similarity=0.321 Sum_probs=91.7
Q ss_pred CeecCCCCC--CCcHHHHHHHHHHcCCcEEEEEcCCCCe-----------------------------------------
Q psy5985 1 MLGTKRTLP--EKKLPQIAAKLKELKIQALLIIGGFEVS----------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~--~e~~~~~~~~L~~~~Id~LvvIGGdgs~----------------------------------------- 37 (153)
+|||+|++. ++++++++++|++++||+||+||||||+
T Consensus 171 iLGS~R~kl~~ee~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GF 250 (1328)
T PTZ00468 171 IICSGRHKIETEEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGY 250 (1328)
T ss_pred cccCcCCCCCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCH
Confidence 589999876 5689999999999999999999999998
Q ss_pred ------------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCC----HHHHHHHH-HHHHHHHH
Q psy5985 38 ------------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFS----IKDLQQDL-YHMASKMA 88 (153)
Q Consensus 38 ------------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~----~~~l~~~i-~~i~~~~~ 88 (153)
+||||||||+|||||+.+|||++||+|||||++++ ++++.+.| +.+.+|..
T Consensus 251 dTA~k~iae~I~nl~~~A~S~~~rv~~VEVMGR~AGhLAL~~ALAtganiiLIPEe~~~k~~tL~dIvd~Iv~~I~kR~~ 330 (1328)
T PTZ00468 251 DTAVKTYSEQIGSIMDAIKTEGYGYYFVRLMGRSASHITLECGLQTRANMILIGEEIKEENRSLMSIVDEIVEMILKRDS 330 (1328)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCcchHHHHHHHHHhcCCCEEEecCcCccchhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877 44444444 45667788
Q ss_pred cCCCeEEEEEeCCCC
Q psy5985 89 EGVQRGLILRNEKCN 103 (153)
Q Consensus 89 ~~~~~~iIvvaEG~~ 103 (153)
.++++++|+||||+.
T Consensus 331 ~Gk~ygIIvVsEGli 345 (1328)
T PTZ00468 331 LGKKHGIVLLPEGLI 345 (1328)
T ss_pred cCCCcEEEEEcCCcc
Confidence 889999999999996
No 26
>PTZ00287 6-phosphofructokinase; Provisional
Probab=99.92 E-value=6.4e-25 Score=211.00 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=91.5
Q ss_pred eecCCCCC---CCcHHHHHHHHHHcCCcEEEEEcCCCCe-----------------------------------------
Q psy5985 2 LGTKRTLP---EKKLPQIAAKLKELKIQALLIIGGFEVS----------------------------------------- 37 (153)
Q Consensus 2 LgTsR~~~---~e~~~~~~~~L~~~~Id~LvvIGGdgs~----------------------------------------- 37 (153)
+||+|+.+ ++.+++++++|++++||+||+||||||+
T Consensus 903 lgssR~~~f~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGF 982 (1419)
T PTZ00287 903 TGNSPEHSLFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGF 982 (1419)
T ss_pred cCCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCH
Confidence 39999765 6789999999999999999999999998
Q ss_pred ------------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCC----HHHHHHHH-HHHHHHHH
Q psy5985 38 ------------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFS----IKDLQQDL-YHMASKMA 88 (153)
Q Consensus 38 ------------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~----~~~l~~~i-~~i~~~~~ 88 (153)
+|+||||||+|||||+++|||+|||+|||||.+.+ ++++.+.| +.+.+|..
T Consensus 983 DTAv~~~seaI~nL~~dA~S~~ry~~fVEVMGR~aGhLALe~aLatgAniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~ 1062 (1419)
T PTZ00287 983 DSSTKVYASLIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQTHPNMVIISEEYGAADKTLWRVVQDIADVVCARAE 1062 (1419)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEEECCCchHHHHHHHHHhcCCCEEEecCcccccccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876 44444444 34666888
Q ss_pred cCCCeEEEEEeCCCCCC
Q psy5985 89 EGVQRGLILRNEKCNDN 105 (153)
Q Consensus 89 ~~~~~~iIvvaEG~~~~ 105 (153)
++++++||+|+||+...
T Consensus 1063 ~GK~ygIVlV~EGLie~ 1079 (1419)
T PTZ00287 1063 LGKNYGTVLIPDALLMH 1079 (1419)
T ss_pred cCCCcEEEEEcCcHHHh
Confidence 99999999999999654
No 27
>KOG2440|consensus
Probab=99.89 E-value=4.7e-23 Score=187.35 Aligned_cols=141 Identities=53% Similarity=0.780 Sum_probs=133.0
Q ss_pred eecCCCCC-CCcHHHHHHHHHHcCCcEEEEEcCCCCe-------------------------------------------
Q psy5985 2 LGTKRTLP-EKKLPQIAAKLKELKIQALLIIGGFEVS------------------------------------------- 37 (153)
Q Consensus 2 LgTsR~~~-~e~~~~~~~~L~~~~Id~LvvIGGdgs~------------------------------------------- 37 (153)
+||.|..| +-.++.+..+|++++|++|+++||+.++
T Consensus 439 ~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snnvpgt~~s~gvdt~ 518 (666)
T KOG2440|consen 439 LGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNNVPGTEFSLGVDTA 518 (666)
T ss_pred heecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCCccccccccccchh
Confidence 67888765 4479999999999999999999999998
Q ss_pred ---------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy5985 38 ---------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLI 96 (153)
Q Consensus 38 ---------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~~~i~~i~~~~~~~~~~~iI 96 (153)
+|++|+||.+|||||.++||+.|++.+++||+++++++|.++++++..+++.+....++
T Consensus 519 ~N~~~~~~d~t~Q~a~~T~~~vf~~e~~gg~~gyla~~~~l~~ga~~a~v~e~~~~~~~l~~~~~~~~~k~~~~~~~~l~ 598 (666)
T KOG2440|consen 519 LNAWARVCDSTKQSAFGTKRRVFVVETMGGYSGYLATMTGLAPGADAAYVPEEGFSIKDLRENAEHLAEKMRYGNPRGLQ 598 (666)
T ss_pred HhhhhhhhhhccCCcccccceeEEEEecCCCccceeccccccccccccccccccccHHHHHHHHHHHHHHhhhcCCCceE
Confidence 99999999999999999999999999999999999999999999999999988888899
Q ss_pred EEeCCCCCCcChHHHHHHHHhhcCCCceeeeeeCCccccCCCCCcc
Q psy5985 97 LRNEKCNDNYNTDFIYRLYSEEGKGLFSARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 97 vvaEG~~~~~~~~~l~~~~~~e~~~~~~~R~~vLGh~QR~~~p~~~ 142 (153)
+.+||+...++++++.+++.++++..|++|.++|||+|+||.|+|.
T Consensus 599 ~r~e~a~~~~~t~~~~~~~~~~~~~~f~~~~~~~gh~qqgg~ps~~ 644 (666)
T KOG2440|consen 599 LRNEGADANYTTLFLENIYSEEGKGKFQARTNVLGHIQQGGSPSPF 644 (666)
T ss_pred EeCCCcchhhhHHHHHHHHhhhcccccceeeccccceecCCCCChH
Confidence 9999999999999999999988788899999999999999999995
No 28
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=99.88 E-value=1.7e-22 Score=193.47 Aligned_cols=106 Identities=18% Similarity=0.270 Sum_probs=93.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCCe------------------------------------------------------
Q psy5985 12 KLPQIAAKLKELKIQALLIIGGFEVS------------------------------------------------------ 37 (153)
Q Consensus 12 ~~~~~~~~L~~~~Id~LvvIGGdgs~------------------------------------------------------ 37 (153)
..+.+.++|++++||+||+||||||+
T Consensus 788 ~~~~v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~s 867 (1328)
T PTZ00468 788 SNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSIS 867 (1328)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHH
Confidence 45889999999999999999999998
Q ss_pred ----------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCC--------------CCHHHHHHHH-HHHHHH
Q psy5985 38 ----------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEK--------------FSIKDLQQDL-YHMASK 86 (153)
Q Consensus 38 ----------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~--------------~~~~~l~~~i-~~i~~~ 86 (153)
+|+||||||+|||||+.+|+|+||++++|||.+ ++++++.+.| +.+.+|
T Consensus 868 e~Ign~l~Dtass~kr~~fVevMGR~ag~LAL~~gLatganivlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R 947 (1328)
T PTZ00468 868 TLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQTHPNLVVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLR 947 (1328)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcChHHHHHHHHHhhCCCEEEecCcccccccccccccccccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 7877777777 457788
Q ss_pred HHcCCCeEEEEEeCCCCCCc-ChHHHHHHHHh
Q psy5985 87 MAEGVQRGLILRNEKCNDNY-NTDFIYRLYSE 117 (153)
Q Consensus 87 ~~~~~~~~iIvvaEG~~~~~-~~~~l~~~~~~ 117 (153)
..+++++++|+++||+.+.. +.+.+++++.+
T Consensus 948 ~~~Gk~ygvIlIsEGlie~ip~~~e~~~li~e 979 (1328)
T PTZ00468 948 SNQGNNFGGLLVSEGLFDQVYPTREYRKIFSR 979 (1328)
T ss_pred HHcCCCcEEEEEcCChHHhCCCHHHHHHHHHH
Confidence 88999999999999997765 55667776654
No 29
>KOG2440|consensus
Probab=99.84 E-value=5.6e-21 Score=173.85 Aligned_cols=137 Identities=25% Similarity=0.277 Sum_probs=111.8
Q ss_pred CeecCCCCC---CCcHHHHHHHHHHcCCcEEEEEcCCCCe----------------------------------------
Q psy5985 1 MLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGGFEVS---------------------------------------- 37 (153)
Q Consensus 1 iLgTsR~~~---~e~~~~~~~~L~~~~Id~LvvIGGdgs~---------------------------------------- 37 (153)
++||+|++. .+.+.+++.++-..+|+.|+++|||||+
T Consensus 64 ~~g~ar~~~f~~~~gr~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giV 143 (666)
T KOG2440|consen 64 LIGTARCKAFRGREGRLAAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIV 143 (666)
T ss_pred ccccccccccccccceeccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhhcceeecccccccCccEEEEEe
Confidence 368888886 6789999999999999999999999998
Q ss_pred -------------------------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCC-HHHHHHH
Q psy5985 38 -------------------------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFS-IKDLQQD 79 (153)
Q Consensus 38 -------------------------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~-~~~l~~~ 79 (153)
.|++|+|||+|||+|+.+++|+|+|+|++||.|.+ .|++++.
T Consensus 144 gsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~evmgr~cg~lalv~~ia~~aD~i~~pe~~~~~~~q~~~~ 223 (666)
T KOG2440|consen 144 GSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAEVMGRHCGYLALVAAIAGGADTIFIPERPGEDPEQLCEI 223 (666)
T ss_pred ccccccccccceeeccccchhhhhhhhhhhhhccCcceEEeeehhhccchHHHHHHhhcCCCEEEecCCCCCCHHHHHHH
Confidence 79999999999999999999999999999999754 4677777
Q ss_pred HHHHHHHHHcCCCeEEEEEeCCCCCCcChHHHHHHHHh--hcCCCceeeeeeCCccccCCCCCcc
Q psy5985 80 LYHMASKMAEGVQRGLILRNEKCNDNYNTDFIYRLYSE--EGKGLFSARQNVLAKHDSAYEEEGM 142 (153)
Q Consensus 80 i~~i~~~~~~~~~~~iIvvaEG~~~~~~~~~l~~~~~~--e~~~~~~~R~~vLGh~QR~~~p~~~ 142 (153)
++.+. .++--+|+|+||+.+...+..+++-+++ ....++++|.|+|||+||++.|+.-
T Consensus 224 l~~~r-----~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~g~p~TilGdvqrgg~p~af 283 (666)
T KOG2440|consen 224 LDSIR-----KRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVVGVPKTILGDVQRGGVPSAF 283 (666)
T ss_pred HHHHH-----hCCCCEEEEEecccCCCCCcccHHHHHHhhhheeeecceeeecCccccCCccccc
Confidence 66543 2336789999999765444333333332 1246799999999999999999875
No 30
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.32 E-value=0.24 Score=41.46 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=21.0
Q ss_pred CcHHHHHHHHHHcCC-----cEEEEEcCCCCe
Q psy5985 11 KKLPQIAAKLKELKI-----QALLIIGGFEVS 37 (153)
Q Consensus 11 e~~~~~~~~L~~~~I-----d~LvvIGGdgs~ 37 (153)
+..+++.+.++.+++ |.+++||||||+
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~D~vi~iGGDGT~ 46 (259)
T PRK00561 15 PVLPKLKKVLKKKLAVEDGADYLFVLGGDGFF 46 (259)
T ss_pred HHHHHHHHHHhhCCCccCCCCEEEEECCcHHH
Confidence 345556667767676 999999999998
No 31
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=87.89 E-value=0.33 Score=40.33 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCC------cEEEEEcCCCCe
Q psy5985 13 LPQIAAKLKELKI------QALLIIGGFEVS 37 (153)
Q Consensus 13 ~~~~~~~L~~~~I------d~LvvIGGdgs~ 37 (153)
.+.+-+-.++|++ |.+++||||||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTl 38 (246)
T PRK04761 8 QAALEELVKRYGDVPIEEADVIVALGGDGFM 38 (246)
T ss_pred HHHHHHHHHHhCCCCcccCCEEEEECCCHHH
Confidence 3444455667777 999999999998
No 32
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.24 E-value=0.59 Score=39.08 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHcC-------CcEEEEEcCCCCe
Q psy5985 12 KLPQIAAKLKELK-------IQALLIIGGFEVS 37 (153)
Q Consensus 12 ~~~~~~~~L~~~~-------Id~LvvIGGdgs~ 37 (153)
..+++.+.|++++ .|.+++||||||+
T Consensus 16 ~~~~l~~~l~~~g~~~~~~~~Dlvi~iGGDGT~ 48 (265)
T PRK04885 16 VASKLKKYLKDFGFILDEKNPDIVISVGGDGTL 48 (265)
T ss_pred HHHHHHHHHHHcCCccCCcCCCEEEEECCcHHH
Confidence 4555666676654 5899999999998
No 33
>PRK13054 lipid kinase; Reviewed
Probab=85.98 E-value=0.78 Score=38.22 Aligned_cols=27 Identities=11% Similarity=0.115 Sum_probs=21.4
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
......++.....+.|.++++|||||+
T Consensus 43 ~~a~~~a~~~~~~~~d~vvv~GGDGTl 69 (300)
T PRK13054 43 GDAARYVEEALALGVATVIAGGGDGTI 69 (300)
T ss_pred CcHHHHHHHHHHcCCCEEEEECCccHH
Confidence 345566666667789999999999997
No 34
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=85.26 E-value=0.9 Score=37.42 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
...++...+.+.|.++++|||||+
T Consensus 47 ~~~~~~~~~~~~d~ivv~GGDGTl 70 (293)
T TIGR00147 47 ARYVEEARKFGVDTVIAGGGDGTI 70 (293)
T ss_pred HHHHHHHHhcCCCEEEEECCCChH
Confidence 344445556789999999999997
No 35
>PRK13055 putative lipid kinase; Reviewed
Probab=83.90 E-value=1 Score=38.24 Aligned_cols=26 Identities=15% Similarity=0.150 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 12 KLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 12 ~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
..++.++.....+.|.++++|||||+
T Consensus 47 ~a~~~~~~~~~~~~d~vvv~GGDGTl 72 (334)
T PRK13055 47 SAKNEAKRAAEAGFDLIIAAGGDGTI 72 (334)
T ss_pred cHHHHHHHHhhcCCCEEEEECCCCHH
Confidence 34556666667789999999999996
No 36
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=83.79 E-value=1.1 Score=37.13 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=21.5
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
....+.++.+.+.+.|.++++|||||+
T Consensus 39 ~~a~~~a~~~~~~~~d~vv~~GGDGTi 65 (293)
T TIGR03702 39 GDAQRYVAEALALGVSTVIAGGGDGTL 65 (293)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCChHH
Confidence 345666666667888999999999986
No 37
>PRK13337 putative lipid kinase; Reviewed
Probab=83.77 E-value=1.2 Score=37.27 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 12 KLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 12 ~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
+..++++.+...+.|.++++|||||.
T Consensus 45 ~a~~~a~~~~~~~~d~vvv~GGDGTl 70 (304)
T PRK13337 45 DATLAAERAVERKFDLVIAAGGDGTL 70 (304)
T ss_pred CHHHHHHHHHhcCCCEEEEEcCCCHH
Confidence 45666666667788999999999986
No 38
>PRK11914 diacylglycerol kinase; Reviewed
Probab=83.70 E-value=0.88 Score=37.91 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 12 KLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 12 ~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
+..+.++.+.+.+.|.+|++|||||+
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GGDGTi 77 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGGDGVI 77 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECCchHH
Confidence 45566666667888999999999997
No 39
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.05 E-value=0.97 Score=37.82 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcC---------CcEEEEEcCCCCe
Q psy5985 13 LPQIAAKLKELK---------IQALLIIGGFEVS 37 (153)
Q Consensus 13 ~~~~~~~L~~~~---------Id~LvvIGGdgs~ 37 (153)
.+++.+.|++++ .|.+++||||||+
T Consensus 19 ~~~l~~~l~~~g~~~~~~~~~~D~vi~lGGDGT~ 52 (264)
T PRK03501 19 VKPLKKIAEEYGFTVVDHPKNANIIVSIGGDGTF 52 (264)
T ss_pred HHHHHHHHHHCCCEEEcCCCCccEEEEECCcHHH
Confidence 445556676654 5799999999998
No 40
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.37 E-value=0.71 Score=39.19 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=12.8
Q ss_pred CCcEEEEEcCCCCe
Q psy5985 24 KIQALLIIGGFEVS 37 (153)
Q Consensus 24 ~Id~LvvIGGdgs~ 37 (153)
+.|.++++|||||+
T Consensus 57 ~~d~vi~~GGDGT~ 70 (305)
T PRK02645 57 LIDLAIVLGGDGTV 70 (305)
T ss_pred CcCEEEEECCcHHH
Confidence 57899999999998
No 41
>PRK00861 putative lipid kinase; Reviewed
Probab=81.90 E-value=1.2 Score=36.92 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 12 KLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 12 ~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
...+.++.....+.|.++++|||||+
T Consensus 45 ~a~~~a~~~~~~~~d~vv~~GGDGTl 70 (300)
T PRK00861 45 GADQLAQEAIERGAELIIASGGDGTL 70 (300)
T ss_pred CHHHHHHHHHhcCCCEEEEECChHHH
Confidence 45666666777889999999999997
No 42
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.37 E-value=1.3 Score=36.77 Aligned_cols=26 Identities=12% Similarity=0.276 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHc---------------CCcEEEEEcCCCCe
Q psy5985 12 KLPQIAAKLKEL---------------KIQALLIIGGFEVS 37 (153)
Q Consensus 12 ~~~~~~~~L~~~---------------~Id~LvvIGGdgs~ 37 (153)
..+++.+.|.++ +.|.+++||||||+
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT~ 54 (256)
T PRK14075 14 EAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGDGTV 54 (256)
T ss_pred HHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCcHHH
Confidence 355566666655 45899999999998
No 43
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=80.01 E-value=0.62 Score=38.83 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=19.5
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 15 QIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 15 ~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.....+...+.|.++++|||||+
T Consensus 67 ~~~~~~~~~~~D~ii~lGGDGT~ 89 (285)
T PF01513_consen 67 NALEEMLEEGVDLIIVLGGDGTF 89 (285)
T ss_dssp ECCHHHHCCCSSEEEEEESHHHH
T ss_pred hhhhhhcccCCCEEEEECCCHHH
Confidence 34556778999999999999998
No 44
>PRK12361 hypothetical protein; Provisional
Probab=77.90 E-value=2.2 Score=38.64 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 12 KLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 12 ~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
...+.++...+.+.|.++++|||||.
T Consensus 285 ~a~~la~~~~~~~~d~Viv~GGDGTl 310 (547)
T PRK12361 285 SAEALAKQARKAGADIVIACGGDGTV 310 (547)
T ss_pred cHHHHHHHHHhcCCCEEEEECCCcHH
Confidence 45566666667889999999999997
No 45
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=77.36 E-value=1.5 Score=38.81 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe---------------EEEEEecCCCcC
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS---------------FFALKTMGGYCG 49 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~---------------v~iVEvMGR~aG 49 (153)
..+|.++..|.+.++|.++||||--|- .|.||.-..=..
T Consensus 275 ~~RQ~A~~~La~~~vD~miVVGG~nSSNT~rL~eia~~~g~~ty~Ie~~~eL~~ 328 (387)
T PRK13371 275 QERQDAMFSLVEEPLDLMVVIGGYNSSNTTHLQEIAIERGIPSYHIDSPERILS 328 (387)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHhcCCCEEEECCHHHcCC
Confidence 368999999988899999999999985 666666555444
No 46
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=76.79 E-value=2.2 Score=38.46 Aligned_cols=26 Identities=8% Similarity=0.192 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 12 KLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 12 ~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.....++.+...+.|.+|++|||||+
T Consensus 156 hA~~la~~~~~~~~D~VV~vGGDGTl 181 (481)
T PLN02958 156 HAKEVVRTMDLSKYDGIVCVSGDGIL 181 (481)
T ss_pred HHHHHHHHhhhcCCCEEEEEcCCCHH
Confidence 34555666666788999999999997
No 47
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.78 E-value=1.4 Score=36.88 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=14.0
Q ss_pred HcCCcEEEEEcCCCCe
Q psy5985 22 ELKIQALLIIGGFEVS 37 (153)
Q Consensus 22 ~~~Id~LvvIGGdgs~ 37 (153)
+.+.|.++++|||||+
T Consensus 55 ~~~~d~vi~iGGDGTl 70 (277)
T PRK03708 55 EMDVDFIIAIGGDGTI 70 (277)
T ss_pred ccCCCEEEEEeCcHHH
Confidence 3478999999999998
No 48
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=76.75 E-value=1.7 Score=31.60 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=15.5
Q ss_pred HHHHHHHHHcC-CcEEEEEcCCCCe
Q psy5985 14 PQIAAKLKELK-IQALLIIGGFEVS 37 (153)
Q Consensus 14 ~~~~~~L~~~~-Id~LvvIGGdgs~ 37 (153)
+.+....+..+ .|.++++|||||+
T Consensus 43 ~~~~~~~~~~~~~~~ivv~GGDGTl 67 (130)
T PF00781_consen 43 EALARILALDDYPDVIVVVGGDGTL 67 (130)
T ss_dssp HHHHHHHHHTTS-SEEEEEESHHHH
T ss_pred HHHHHHHhhccCccEEEEEcCccHH
Confidence 33333333444 4899999999986
No 49
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=75.50 E-value=1.8 Score=39.10 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=31.2
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe---------------EEEEEecCCCc
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS---------------FFALKTMGGYC 48 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~---------------v~iVEvMGR~a 48 (153)
..+|.++..|-+.++|.++||||..|- .|.||.-.+=.
T Consensus 349 qeRQdA~~~L~~~~vDlmiVVGG~NSSNT~~L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 349 QERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHHhCCCEEEECCHHHcC
Confidence 368899999987889999999999986 67777766654
No 50
>PRK15447 putative protease; Provisional
Probab=75.49 E-value=16 Score=30.73 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=26.3
Q ss_pred HHHHHHhhc-CCCEEEEcCCC------CCHHHHHHHHHHH
Q psy5985 51 LATVAGLAG-GADAAYIYEEK------FSIKDLQQDLYHM 83 (153)
Q Consensus 51 LA~~aglA~-gad~iliPE~~------~~~~~l~~~i~~i 83 (153)
-+.+++++. |||.||+++.. |+.+++.+.++.+
T Consensus 18 ~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~ 57 (301)
T PRK15447 18 RDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERL 57 (301)
T ss_pred HHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHH
Confidence 357888865 99999999885 8889988877643
No 51
>PRK13057 putative lipid kinase; Reviewed
Probab=75.43 E-value=1.7 Score=35.90 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 13 LPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 13 ~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
..++++. ...+.|.++++|||||+
T Consensus 40 a~~~~~~-~~~~~d~iiv~GGDGTv 63 (287)
T PRK13057 40 LSEVIEA-YADGVDLVIVGGGDGTL 63 (287)
T ss_pred HHHHHHH-HHcCCCEEEEECchHHH
Confidence 4444444 35678999999999997
No 52
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=74.79 E-value=3 Score=35.27 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 12 KLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 12 ~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
+..++++.+...+.|.+++.|||||.
T Consensus 46 ~a~~~a~~a~~~~~D~via~GGDGTv 71 (301)
T COG1597 46 DAIEIAREAAVEGYDTVIAAGGDGTV 71 (301)
T ss_pred cHHHHHHHHHhcCCCEEEEecCcchH
Confidence 57788888888899999999999985
No 53
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.47 E-value=1.8 Score=36.45 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=13.2
Q ss_pred CCcEEEEEcCCCCe
Q psy5985 24 KIQALLIIGGFEVS 37 (153)
Q Consensus 24 ~Id~LvvIGGdgs~ 37 (153)
+.|.+++||||||+
T Consensus 42 ~~d~vi~iGGDGT~ 55 (272)
T PRK02231 42 RAQLAIVIGGDGNM 55 (272)
T ss_pred CCCEEEEECCcHHH
Confidence 68999999999998
No 54
>PRK13059 putative lipid kinase; Reviewed
Probab=72.36 E-value=3.2 Score=34.56 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=15.7
Q ss_pred HHHHcCCcEEEEEcCCCCe
Q psy5985 19 KLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 19 ~L~~~~Id~LvvIGGdgs~ 37 (153)
...+.+.|.++++|||||+
T Consensus 51 ~~~~~~~d~vi~~GGDGTv 69 (295)
T PRK13059 51 KDIDESYKYILIAGGDGTV 69 (295)
T ss_pred HHhhcCCCEEEEECCccHH
Confidence 3445788999999999997
No 55
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.74 E-value=1.8 Score=36.65 Aligned_cols=14 Identities=21% Similarity=0.199 Sum_probs=12.8
Q ss_pred CCcEEEEEcCCCCe
Q psy5985 24 KIQALLIIGGFEVS 37 (153)
Q Consensus 24 ~Id~LvvIGGdgs~ 37 (153)
+.|.+|+||||||+
T Consensus 64 ~~Dlvi~iGGDGT~ 77 (287)
T PRK14077 64 ISDFLISLGGDGTL 77 (287)
T ss_pred CCCEEEEECCCHHH
Confidence 57899999999997
No 56
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=71.28 E-value=3.9 Score=35.84 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
++...+++.+.++++|-++..|||||.
T Consensus 87 ~DT~~~~r~~~~~gVdlIvfaGGDGTa 113 (355)
T COG3199 87 EDTINAVRRMVERGVDLIVFAGGDGTA 113 (355)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCCccH
Confidence 567889999999999999999999997
No 57
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=71.15 E-value=2 Score=31.27 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=12.4
Q ss_pred CCcEEEEEcCCCCe
Q psy5985 24 KIQALLIIGGFEVS 37 (153)
Q Consensus 24 ~Id~LvvIGGdgs~ 37 (153)
..|.++++|||||+
T Consensus 49 ~~d~vvv~GGDGTi 62 (124)
T smart00046 49 KFDRVLVCGGDGTV 62 (124)
T ss_pred cCCEEEEEccccHH
Confidence 46799999999997
No 58
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=71.09 E-value=16 Score=21.98 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=27.6
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCeEEEE
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVSFFAL 41 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~v~iV 41 (153)
.....++.+.+++++++.+.|+..+|.++-++
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i 46 (57)
T PF00571_consen 15 DDSLEEALEIMRKNGISRLPVVDEDGKLVGII 46 (57)
T ss_dssp TSBHHHHHHHHHHHTSSEEEEESTTSBEEEEE
T ss_pred cCcHHHHHHHHHHcCCcEEEEEecCCEEEEEE
Confidence 45699999999999999999999988875544
No 59
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.56 E-value=1.9 Score=36.80 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=13.0
Q ss_pred CCcEEEEEcCCCCe
Q psy5985 24 KIQALLIIGGFEVS 37 (153)
Q Consensus 24 ~Id~LvvIGGdgs~ 37 (153)
++|.+++||||||+
T Consensus 68 ~~Dlvi~iGGDGTl 81 (305)
T PRK02649 68 SMKFAIVLGGDGTV 81 (305)
T ss_pred CcCEEEEEeCcHHH
Confidence 57999999999998
No 60
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.20 E-value=2 Score=36.37 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=13.0
Q ss_pred CCcEEEEEcCCCCe
Q psy5985 24 KIQALLIIGGFEVS 37 (153)
Q Consensus 24 ~Id~LvvIGGdgs~ 37 (153)
+.|.++++|||||+
T Consensus 63 ~~d~vi~lGGDGT~ 76 (292)
T PRK03378 63 QADLAIVVGGDGNM 76 (292)
T ss_pred CCCEEEEECCcHHH
Confidence 57999999999998
No 61
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.33 E-value=2.1 Score=36.32 Aligned_cols=14 Identities=14% Similarity=0.195 Sum_probs=13.0
Q ss_pred CCcEEEEEcCCCCe
Q psy5985 24 KIQALLIIGGFEVS 37 (153)
Q Consensus 24 ~Id~LvvIGGdgs~ 37 (153)
+.|.++++|||||+
T Consensus 68 ~~D~vi~lGGDGT~ 81 (296)
T PRK04539 68 YCDLVAVLGGDGTF 81 (296)
T ss_pred CCCEEEEECCcHHH
Confidence 58999999999998
No 62
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=69.31 E-value=2.4 Score=38.81 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=13.2
Q ss_pred CCcEEEEEcCCCCe
Q psy5985 24 KIQALLIIGGFEVS 37 (153)
Q Consensus 24 ~Id~LvvIGGdgs~ 37 (153)
++|.+|+||||||+
T Consensus 262 ~~DlVIsiGGDGTl 275 (508)
T PLN02935 262 KVDLVITLGGDGTV 275 (508)
T ss_pred CCCEEEEECCcHHH
Confidence 68999999999998
No 63
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.96 E-value=2.2 Score=35.81 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=13.2
Q ss_pred CCcEEEEEcCCCCe
Q psy5985 24 KIQALLIIGGFEVS 37 (153)
Q Consensus 24 ~Id~LvvIGGdgs~ 37 (153)
+.|.++++|||||+
T Consensus 52 ~~D~vi~lGGDGT~ 65 (271)
T PRK01185 52 NADVIITIGGDGTI 65 (271)
T ss_pred CCCEEEEEcCcHHH
Confidence 68999999999998
No 64
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.61 E-value=2.3 Score=36.08 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=13.0
Q ss_pred CCcEEEEEcCCCCe
Q psy5985 24 KIQALLIIGGFEVS 37 (153)
Q Consensus 24 ~Id~LvvIGGdgs~ 37 (153)
+.|.++++|||||+
T Consensus 64 ~~dlvi~lGGDGT~ 77 (292)
T PRK01911 64 SADMVISIGGDGTF 77 (292)
T ss_pred CCCEEEEECCcHHH
Confidence 58999999999998
No 65
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.24 E-value=2.4 Score=36.21 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=13.0
Q ss_pred CCcEEEEEcCCCCe
Q psy5985 24 KIQALLIIGGFEVS 37 (153)
Q Consensus 24 ~Id~LvvIGGdgs~ 37 (153)
+.|.+|++|||||+
T Consensus 72 ~~D~vi~lGGDGT~ 85 (306)
T PRK03372 72 GCELVLVLGGDGTI 85 (306)
T ss_pred CCCEEEEEcCCHHH
Confidence 57999999999998
No 66
>PLN02929 NADH kinase
Probab=66.45 E-value=2.8 Score=35.93 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=11.8
Q ss_pred CCcEEEEEcCCCCe
Q psy5985 24 KIQALLIIGGFEVS 37 (153)
Q Consensus 24 ~Id~LvvIGGdgs~ 37 (153)
+.|.+|++|||||+
T Consensus 64 ~~Dlvi~lGGDGT~ 77 (301)
T PLN02929 64 DVDLVVAVGGDGTL 77 (301)
T ss_pred CCCEEEEECCcHHH
Confidence 34788889999998
No 67
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=65.57 E-value=55 Score=27.57 Aligned_cols=103 Identities=12% Similarity=0.052 Sum_probs=58.5
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe-----------------------EEEEEecCCCcCHHHH--HHHhhcCCCEE
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS-----------------------FFALKTMGGYCGYLAT--VAGLAGGADAA 64 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~-----------------------v~iVEvMGR~aG~LA~--~aglA~gad~i 64 (153)
.+.+++.++.|.+.++++|++.|..|=+ -.++=|..-+.-.-.- ..+-..|||.+
T Consensus 28 ~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~v 107 (309)
T cd00952 28 LDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGT 107 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEE
Confidence 4568899999999999999999988877 3334443333211111 22223599976
Q ss_pred EEc-CC--CCCHHHHHHHHHHHHHHHHcCCCeEEEEEeC--CCCCCcChHHHHHHH
Q psy5985 65 YIY-EE--KFSIKDLQQDLYHMASKMAEGVQRGLILRNE--KCNDNYNTDFIYRLY 115 (153)
Q Consensus 65 liP-E~--~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaE--G~~~~~~~~~l~~~~ 115 (153)
++. .. +.+-+.+.+..+.+.+. ..+--|++-.= -.+...+.+.+.++.
T Consensus 108 lv~~P~y~~~~~~~l~~yf~~va~a---~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 108 MLGRPMWLPLDVDTAVQFYRDVAEA---VPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred EECCCcCCCCCHHHHHHHHHHHHHh---CCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 554 32 45667887777665432 11234454421 112233455666653
No 68
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=63.91 E-value=37 Score=28.08 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=26.8
Q ss_pred cCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCCC
Q psy5985 4 TKRTLPEKKLPQIAAKLKELKIQALLIIGGFEV 36 (153)
Q Consensus 4 TsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdgs 36 (153)
|+|......++..+..+...+|+.+++++||-+
T Consensus 66 t~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~ 98 (272)
T TIGR00676 66 TCIGATREEIREILREYRELGIRHILALRGDPP 98 (272)
T ss_pred eecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 455544456778888899999999999999987
No 69
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=63.72 E-value=43 Score=28.04 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=26.9
Q ss_pred cCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCCC
Q psy5985 4 TKRTLPEKKLPQIAAKLKELKIQALLIIGGFEV 36 (153)
Q Consensus 4 TsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdgs 36 (153)
|+|....+.++..+..+...+|+-+++++||-.
T Consensus 67 tcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p 99 (281)
T TIGR00677 67 TCTNMPIEMIDDALERAYSNGIQNILALRGDPP 99 (281)
T ss_pred ccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 455554456788888889999999999999985
No 70
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=63.23 E-value=11 Score=32.30 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEE
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAY 65 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~il 65 (153)
..++.++..|.+ .+|+++||||..| -|.-.|+-.|.-+ |.+..+
T Consensus 198 ~~RQ~a~~~La~-~vD~miVVGg~~S---------sNT~kL~~i~~~~-~~~t~~ 241 (298)
T PRK01045 198 QNRQEAVKELAP-QADLVIVVGSKNS---------SNSNRLREVAEEA-GAPAYL 241 (298)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCC---------ccHHHHHHHHHHH-CCCEEE
Confidence 368888888876 7999999999987 3666666544443 444333
No 71
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=61.36 E-value=3.7 Score=34.65 Aligned_cols=14 Identities=14% Similarity=0.349 Sum_probs=12.9
Q ss_pred CCcEEEEEcCCCCe
Q psy5985 24 KIQALLIIGGFEVS 37 (153)
Q Consensus 24 ~Id~LvvIGGdgs~ 37 (153)
+.|.+|++|||||+
T Consensus 63 ~~d~vi~~GGDGt~ 76 (291)
T PRK02155 63 RADLAVVLGGDGTM 76 (291)
T ss_pred CCCEEEEECCcHHH
Confidence 57999999999998
No 72
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=57.65 E-value=56 Score=24.84 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=41.6
Q ss_pred EEEecCCCcCHHHHHHHhhcCCCEEEEcCC----CCCHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCC
Q psy5985 40 ALKTMGGYCGYLATVAGLAGGADAAYIYEE----KFSIKDLQQDLYHMASKMAEGVQRGLILRNEKCND 104 (153)
Q Consensus 40 iVEvMGR~aG~LA~~aglA~gad~iliPE~----~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG~~~ 104 (153)
.+=+||..+.-.++..+++.|+|.++.-+. .++.+.+.+.+..+. ++ .+..+|+.+.-...
T Consensus 39 ~~v~~G~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~a~~l~~~i---~~-~~p~~Vl~g~t~~g 103 (181)
T cd01985 39 TALVIGPPAAEVALREALAMGADKVLLVEDPALAGYDPEATAKALAALI---KK-EKPDLILAGATSIG 103 (181)
T ss_pred EEEEECChHHHHHHHHHHHhCCCEEEEEecCcccCCChHHHHHHHHHHH---HH-hCCCEEEECCcccc
Confidence 344588887777767778889999888654 466777777665443 22 34678888776653
No 73
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=56.42 E-value=11 Score=31.92 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
..++.+++.|.+ .+|.++||||..|-
T Consensus 197 ~~RQ~a~~~La~-~vD~miVIGg~~Ss 222 (281)
T PF02401_consen 197 QNRQEAARELAK-EVDAMIVIGGKNSS 222 (281)
T ss_dssp HHHHHHHHHHHC-CSSEEEEES-TT-H
T ss_pred HHHHHHHHHHHh-hCCEEEEecCCCCc
Confidence 358888888865 79999999999874
No 74
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=56.28 E-value=13 Score=30.60 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=27.4
Q ss_pred cCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 4 TKRTLPEKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 4 TsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
|+|......++..+..+..++|+.+++++||-.-
T Consensus 66 t~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~ 99 (274)
T cd00537 66 TCRDRNRIELQSILLGAHALGIRNILALRGDPPK 99 (274)
T ss_pred ccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCC
Confidence 4554444568888899999999999999999763
No 75
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.25 E-value=5 Score=36.90 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=12.8
Q ss_pred CCcEEEEEcCCCCe
Q psy5985 24 KIQALLIIGGFEVS 37 (153)
Q Consensus 24 ~Id~LvvIGGdgs~ 37 (153)
++|.+|+||||||+
T Consensus 348 ~~dlvi~lGGDGT~ 361 (569)
T PRK14076 348 EISHIISIGGDGTV 361 (569)
T ss_pred CCCEEEEECCcHHH
Confidence 57899999999998
No 76
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=54.93 E-value=32 Score=28.97 Aligned_cols=54 Identities=17% Similarity=0.009 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCC-------e-----------------EEEEEecCCCcCHHHHHHHhhcCCCEEEE
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEV-------S-----------------FFALKTMGGYCGYLATVAGLAGGADAAYI 66 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs-------~-----------------v~iVEvMGR~aG~LA~~aglA~gad~ili 66 (153)
...+.+++.+++.+...++..|.... . +|| .|+|+-+++.+++.|.-.+++
T Consensus 256 ~~~~~~~~a~~~~~~~~i~~~g~~~~~~~~~~~~v~~~~~~p~~~ll~~~d~~I-----~hgG~~t~~eal~~GvP~v~~ 330 (401)
T cd03784 256 ALARLDVEAVATLGQRAILSLGWGGLGAEDLPDNVRVVDFVPHDWLLPRCAAVV-----HHGGAGTTAAALRAGVPQLVV 330 (401)
T ss_pred HHHHHHHHHHHHcCCeEEEEccCccccccCCCCceEEeCCCCHHHHhhhhheee-----ecCCchhHHHHHHcCCCEEee
Confidence 44677788888889998999987541 1 444 789999999999999999999
Q ss_pred cCC
Q psy5985 67 YEE 69 (153)
Q Consensus 67 PE~ 69 (153)
|-.
T Consensus 331 P~~ 333 (401)
T cd03784 331 PFF 333 (401)
T ss_pred CCC
Confidence 854
No 77
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=54.65 E-value=19 Score=24.51 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
..+.+.|+++++..+++|||.++.
T Consensus 62 ~~~~~~l~~~~~~~v~iiGg~~~i 85 (92)
T PF04122_consen 62 SSVKAFLKSLNIKKVYIIGGEGAI 85 (92)
T ss_pred HHHHHHHHHcCCCEEEEECCCCcc
Confidence 567788999999999999999863
No 78
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=53.90 E-value=19 Score=30.36 Aligned_cols=102 Identities=23% Similarity=0.247 Sum_probs=59.1
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe------------EEEEEecCCC------cCHHHHHHH-------hhcCCCEE
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS------------FFALKTMGGY------CGYLATVAG-------LAGGADAA 64 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~------------v~iVEvMGR~------aG~LA~~ag-------lA~gad~i 64 (153)
.+.+++.++.|.+.++|+|++.|..|=+ -+++|+-+.. .|-..+.-+ -..|||.+
T Consensus 24 ~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~i 103 (299)
T COG0329 24 EEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGI 103 (299)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEE
Confidence 3568899999999999999999998876 2233333222 122212211 12489987
Q ss_pred EEcCC---CCCHHHHHHHHHHHHHHHHcCCCeEEEEEe-CCC-CCCcChHHHHHHH
Q psy5985 65 YIYEE---KFSIKDLQQDLYHMASKMAEGVQRGLILRN-EKC-NDNYNTDFIYRLY 115 (153)
Q Consensus 65 liPE~---~~~~~~l~~~i~~i~~~~~~~~~~~iIvva-EG~-~~~~~~~~l~~~~ 115 (153)
++.-. +.+.+.+.+..+++.+.. +.-+|+-+ -+. ....+.+.+.++.
T Consensus 104 l~v~PyY~k~~~~gl~~hf~~ia~a~----~lPvilYN~P~~tg~~l~~e~i~~la 155 (299)
T COG0329 104 LVVPPYYNKPSQEGLYAHFKAIAEAV----DLPVILYNIPSRTGVDLSPETIARLA 155 (299)
T ss_pred EEeCCCCcCCChHHHHHHHHHHHHhc----CCCEEEEeCccccCCCCCHHHHHHHh
Confidence 76543 566778888777655322 33355544 222 1223445555543
No 79
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=53.88 E-value=17 Score=30.87 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=30.9
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEE
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAY 65 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~il 65 (153)
..++.++..|. ..+|.++|+||..| -|+..|+--|.-. |+...+
T Consensus 197 ~~RQ~a~~~La-~~vD~miVVGg~~S---------sNT~rL~eia~~~-~~~t~~ 240 (281)
T PRK12360 197 KKRQESAKELS-KEVDVMIVIGGKHS---------SNTQKLVKICEKN-CPNTFH 240 (281)
T ss_pred hhHHHHHHHHH-HhCCEEEEecCCCC---------ccHHHHHHHHHHH-CCCEEE
Confidence 46888899995 57999999999987 3666776444333 444333
No 80
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=53.62 E-value=1e+02 Score=25.53 Aligned_cols=100 Identities=20% Similarity=0.156 Sum_probs=59.7
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe-----------------------EEEEEecCCCcCHHHH---HHHhhcCCCE
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS-----------------------FFALKTMGGYCGYLAT---VAGLAGGADA 63 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~-----------------------v~iVEvMGR~aG~LA~---~aglA~gad~ 63 (153)
.+.+++.++.+.+.+++++++.|..|=+ -.|+=+ |. +=.-+. ..+-+.|||.
T Consensus 20 ~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv-~~-~t~~~i~~a~~a~~~Gad~ 97 (289)
T cd00951 20 EDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGA-GY-GTATAIAYAQAAEKAGADG 97 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEec-CC-CHHHHHHHHHHHHHhCCCE
Confidence 3568889999999999999999998876 223333 32 111121 2223369999
Q ss_pred EEEcCC---CCCHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCcChHHHHHHHH
Q psy5985 64 AYIYEE---KFSIKDLQQDLYHMASKMAEGVQRGLILRNEKCNDNYNTDFIYRLYS 116 (153)
Q Consensus 64 iliPE~---~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG~~~~~~~~~l~~~~~ 116 (153)
+++.-. +.+.+.+.+..+.+.+ .-+--+++-. -.....+.+.+.++.+
T Consensus 98 v~~~pP~y~~~~~~~i~~~f~~v~~----~~~~pi~lYn-~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 98 ILLLPPYLTEAPQEGLYAHVEAVCK----STDLGVIVYN-RANAVLTADSLARLAE 148 (289)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHh----cCCCCEEEEe-CCCCCCCHHHHHHHHh
Confidence 777543 3455677776665542 2234466655 2222345677777653
No 81
>PLN02727 NAD kinase
Probab=52.57 E-value=6.1 Score=38.88 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=13.2
Q ss_pred CCcEEEEEcCCCCe
Q psy5985 24 KIQALLIIGGFEVS 37 (153)
Q Consensus 24 ~Id~LvvIGGdgs~ 37 (153)
++|.+|+||||||+
T Consensus 743 ~~DLVIvLGGDGTl 756 (986)
T PLN02727 743 RVDFVACLGGDGVI 756 (986)
T ss_pred CCCEEEEECCcHHH
Confidence 68999999999998
No 82
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=51.15 E-value=38 Score=28.15 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=23.3
Q ss_pred cCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCCC
Q psy5985 4 TKRTLPEKKLPQIAAKLKELKIQALLIIGGFEV 36 (153)
Q Consensus 4 TsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdgs 36 (153)
|+|......++..+..+...+|+-++++.||-.
T Consensus 78 t~rd~n~~~l~~~L~~~~~~Gi~niL~l~GD~~ 110 (287)
T PF02219_consen 78 TCRDRNREALQSDLLGAHALGIRNILALTGDPP 110 (287)
T ss_dssp ESTTSBHHHHHHHHHHHHHTT--EEEEESS-TS
T ss_pred cccCCCHHHHHHHHHHHHHcCCCeEEEecCCCC
Confidence 456544456777888899999999999999964
No 83
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=50.88 E-value=56 Score=26.74 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcC
Q psy5985 12 KLPQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEG 90 (153)
Q Consensus 12 ~~~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~ 90 (153)
..+++.+.|+..++..+ --...-+.-|+.-=-+|+++.||.+|+++++=|..-.+|.-. +.+-++.+++.+.
T Consensus 115 ~~~rv~~~l~~vgl~~~-------~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~ 187 (235)
T COG1122 115 IEERVAEALELVGLEEL-------LDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE 187 (235)
T ss_pred HHHHHHHHHHHcCchhh-------ccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 44556666776666543 013344556666667899999999999999988754443222 2222234445443
Q ss_pred CCeEEEEEe
Q psy5985 91 VQRGLILRN 99 (153)
Q Consensus 91 ~~~~iIvva 99 (153)
.+..+|+++
T Consensus 188 ~~~tii~~t 196 (235)
T COG1122 188 GGKTIIIVT 196 (235)
T ss_pred CCCeEEEEe
Confidence 334555554
No 84
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=50.61 E-value=17 Score=30.67 Aligned_cols=84 Identities=20% Similarity=0.080 Sum_probs=47.1
Q ss_pred cCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCC-cCHHHHHHHhhc----CCCEEEEcCCCCCHHHHHH
Q psy5985 4 TKRTLPEKKLPQIAAKLKELKIQALLIIGGFEVSFFALKTMGGY-CGYLATVAGLAG----GADAAYIYEEKFSIKDLQQ 78 (153)
Q Consensus 4 TsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~-aG~LA~~aglA~----gad~iliPE~~~~~~~l~~ 78 (153)
|+|......++..+..+...+|+-+++++||-.-- ..+. .-.+.+..-+.. ....-.-||...+.+.+..
T Consensus 90 tcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~-----~~~~~~~a~dLv~li~~~~~~~i~va~yPeghp~~~~~~~ 164 (296)
T PRK09432 90 TCIDATPDELRTIAKDYWNNGIRHIVALRGDLPPG-----SGKPEMYASDLVTLLKSVADFDISVAAYPEVHPEAKSAQA 164 (296)
T ss_pred ccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCC-----CCCCCcCHHHHHHHHHHhCCCccceeeCCCCCCCCCCHHH
Confidence 45655455688888899999999999999995320 0000 000111111111 1223455776555555555
Q ss_pred HHHHHHHHHHcCCC
Q psy5985 79 DLYHMASKMAEGVQ 92 (153)
Q Consensus 79 ~i~~i~~~~~~~~~ 92 (153)
+++.+.+|.+.|-.
T Consensus 165 dl~~Lk~K~~aGA~ 178 (296)
T PRK09432 165 DLINLKRKVDAGAN 178 (296)
T ss_pred HHHHHHHHHHcCCC
Confidence 66666666665543
No 85
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=50.60 E-value=61 Score=25.38 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=28.2
Q ss_pred HHHHHHhhcCCCEEEEcCCCCCHHH--HHHHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 51 LATVAGLAGGADAAYIYEEKFSIKD--LQQDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 51 LA~~aglA~gad~iliPE~~~~~~~--l~~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
+|+..+++..++++++-|..-.+|. ..+.+..+.+.+.+..+..+|+++-
T Consensus 130 lala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH 181 (204)
T cd03240 130 LALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITH 181 (204)
T ss_pred HHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 3456677789999999887544432 2212333333443322456777763
No 86
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=50.58 E-value=23 Score=30.01 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=21.5
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
..+|.++..|.+ .+|.++||||..|-
T Consensus 196 ~~RQ~a~~~la~-~vD~miVVGg~nSs 221 (280)
T TIGR00216 196 QNRQDAVKELAP-EVDLMIVIGGKNSS 221 (280)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCc
Confidence 468888888865 69999999998873
No 87
>KOG1465|consensus
Probab=50.47 E-value=45 Score=29.14 Aligned_cols=48 Identities=6% Similarity=0.124 Sum_probs=29.4
Q ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCcChHHHHHHH
Q psy5985 60 GADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLILRNEKCNDNYNTDFIYRLY 115 (153)
Q Consensus 60 gad~iliPE~~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG~~~~~~~~~l~~~~ 115 (153)
.-|+||++-..-+++.++.. ..++++++. |+|+||+...-. ..+++-+
T Consensus 162 snEviLT~g~SrTV~~FL~~------A~kk~Rkf~-viVaE~~p~~qg-H~~Ak~l 209 (353)
T KOG1465|consen 162 SNEVILTLGSSRTVENFLKH------AAKKGRKFR-VIVAEGAPNNQG-HELAKPL 209 (353)
T ss_pred cCceEEecCccHHHHHHHHH------HHhccCceE-EEEeecCCcccc-hHhhHHH
Confidence 56788888866666666543 223444444 999999976543 4444333
No 88
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=49.83 E-value=34 Score=29.02 Aligned_cols=46 Identities=15% Similarity=0.240 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcC
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYE 68 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE 68 (153)
+..+++++.+++++.|.+|.||| ..+.++|=..+...+..+|.+|=
T Consensus 65 ~~v~~~~~~~~~~~~d~iIaiGG------------Gs~~D~aK~~a~~~~~p~i~iPT 110 (339)
T cd08173 65 EEVEKVESSARDIGADFVIGVGG------------GRVIDVAKVAAYKLGIPFISVPT 110 (339)
T ss_pred HHHHHHHHHhhhcCCCEEEEeCC------------chHHHHHHHHHHhcCCCEEEecC
Confidence 34555666666666666666665 44455554444444555555553
No 89
>PRK04302 triosephosphate isomerase; Provisional
Probab=49.61 E-value=41 Score=26.81 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=29.2
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEc--CCCCCHHHHHHHHH
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIY--EEKFSIKDLQQDLY 81 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliP--E~~~~~~~l~~~i~ 81 (153)
.-|.+.|.+.....-..|+|.+++| |...+.+++.+.++
T Consensus 68 ~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~ 108 (223)
T PRK04302 68 EPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVE 108 (223)
T ss_pred CCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHH
Confidence 3588999988777777899999999 55666666555443
No 90
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=49.40 E-value=47 Score=26.98 Aligned_cols=38 Identities=8% Similarity=0.132 Sum_probs=25.6
Q ss_pred EEeCCCCCCcChHHHHHHHH-hhcCCCceeeee---eCCccccCCC
Q psy5985 97 LRNEKCNDNYNTDFIYRLYS-EEGKGLFSARQN---VLAKHDSAYE 138 (153)
Q Consensus 97 vvaEG~~~~~~~~~l~~~~~-~e~~~~~~~R~~---vLGh~QR~~~ 138 (153)
+-|||+-- +.+.++++ .|+..|++--.+ ..||+||+-.
T Consensus 197 idaegaei----eilnqiyeftekhngieyyicfefamghiqrsnr 238 (286)
T PF05575_consen 197 IDAEGAEI----EILNQIYEFTEKHNGIEYYICFEFAMGHIQRSNR 238 (286)
T ss_pred EcCCCcch----hHHHHHHHHHhhcCCeEEEEEehhhhhhhhhccc
Confidence 67899743 56666664 355677775555 4899999643
No 91
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=49.24 E-value=1.4e+02 Score=24.62 Aligned_cols=100 Identities=20% Similarity=0.125 Sum_probs=56.9
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe----------------------E-EEEEecCCCcCHHHH---HHHhhcCCCE
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS----------------------F-FALKTMGGYCGYLAT---VAGLAGGADA 63 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~----------------------v-~iVEvMGR~aG~LA~---~aglA~gad~ 63 (153)
.+.+++.++.|.+.+++++++.|..|=+ + .++=|.+-+. .-++ ..+-..|+|.
T Consensus 21 ~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~-~~~i~~a~~a~~~G~d~ 99 (292)
T PRK03170 21 FAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNST-AEAIELTKFAEKAGADG 99 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchH-HHHHHHHHHHHHcCCCE
Confidence 3468889999999999999999888766 2 2222222111 1111 1122259998
Q ss_pred EEE-cCC--CCCHHHHHHHHHHHHHHHHcCCCeEEEEEeCC--CCCCcChHHHHHH
Q psy5985 64 AYI-YEE--KFSIKDLQQDLYHMASKMAEGVQRGLILRNEK--CNDNYNTDFIYRL 114 (153)
Q Consensus 64 ili-PE~--~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG--~~~~~~~~~l~~~ 114 (153)
+++ |.. +.+-+.+.+..+.+.+ .-+.-+++-.-- .+...+.+.+.++
T Consensus 100 v~~~pP~~~~~~~~~i~~~~~~ia~----~~~~pv~lYn~P~~~g~~l~~~~~~~L 151 (292)
T PRK03170 100 ALVVTPYYNKPTQEGLYQHFKAIAE----ATDLPIILYNVPGRTGVDILPETVARL 151 (292)
T ss_pred EEECCCcCCCCCHHHHHHHHHHHHh----cCCCCEEEEECccccCCCCCHHHHHHH
Confidence 776 543 3455777776655543 223445555321 2233456677666
No 92
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=49.10 E-value=50 Score=27.95 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCCe---------EEEEE------------ecCCCcCHHHHHHHhhcCCCEEEEcCC
Q psy5985 12 KLPQIAAKLKELKIQALLIIGGFEVS---------FFALK------------TMGGYCGYLATVAGLAGGADAAYIYEE 69 (153)
Q Consensus 12 ~~~~~~~~L~~~~Id~LvvIGGdgs~---------v~iVE------------vMGR~aG~LA~~aglA~gad~iliPE~ 69 (153)
..+.+++.|++.++..++..|+.... +.+++ ++=-++|+-++..+++.|.-.+++|-.
T Consensus 242 ~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~I~hgG~~t~~Eal~~G~P~v~~p~~ 320 (392)
T TIGR01426 242 FYRTCVEAFRDLDWHVVLSVGRGVDPADLGELPPNVEVRQWVPQLEILKKADAFITHGGMNSTMEALFNGVPMVAVPQG 320 (392)
T ss_pred HHHHHHHHHhcCCCeEEEEECCCCChhHhccCCCCeEEeCCCCHHHHHhhCCEEEECCCchHHHHHHHhCCCEEecCCc
Confidence 57788899999999988888765321 22211 111478998899999999999999865
No 93
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.02 E-value=71 Score=21.98 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=26.2
Q ss_pred CCCcCHHHHHHHhh---cCCCEEEEcCCCCCHHHHHHHHHHHH
Q psy5985 45 GGYCGYLATVAGLA---GGADAAYIYEEKFSIKDLQQDLYHMA 84 (153)
Q Consensus 45 GR~aG~LA~~aglA---~gad~iliPE~~~~~~~l~~~i~~i~ 84 (153)
||.-|+--...-+. ..||+|+++=.-.+ ......+++..
T Consensus 30 g~~~~~~~~~~~l~~~i~~aD~VIv~t~~vs-H~~~~~vk~~a 71 (97)
T PF10087_consen 30 GRDGGDEKKASRLPSKIKKADLVIVFTDYVS-HNAMWKVKKAA 71 (97)
T ss_pred ecCCCCccchhHHHHhcCCCCEEEEEeCCcC-hHHHHHHHHHH
Confidence 88888776654444 46899999988776 45555555443
No 94
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=48.40 E-value=1.5e+02 Score=24.15 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=23.4
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
+..+.+++.+++++++.++.+||-.+.
T Consensus 94 ~~a~~il~~~~~~gv~~Ii~Lgg~~~~ 120 (238)
T TIGR00161 94 DMTNAIVEWMVRNNSRELISFNGMVVR 120 (238)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCccCC
Confidence 456788899999999999999997664
No 95
>PLN02204 diacylglycerol kinase
Probab=48.25 E-value=12 Score=35.19 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=14.4
Q ss_pred HcCCcEEEEEcCCCCe
Q psy5985 22 ELKIQALLIIGGFEVS 37 (153)
Q Consensus 22 ~~~Id~LvvIGGdgs~ 37 (153)
..+.|++|++||||++
T Consensus 216 l~~~D~VVaVGGDGt~ 231 (601)
T PLN02204 216 LKSYDGVIAVGGDGFF 231 (601)
T ss_pred ccCCCEEEEEcCccHH
Confidence 5678999999999998
No 96
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=47.72 E-value=34 Score=29.24 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=18.0
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCC
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGF 34 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGd 34 (153)
+..+++++.+++.+.|.+|.|||-
T Consensus 74 ~~v~~~~~~~~~~~~d~IIaiGGG 97 (350)
T PRK00843 74 EEVEKVEEKAKDVNAGFLIGVGGG 97 (350)
T ss_pred HHHHHHHHHhhccCCCEEEEeCCc
Confidence 456777777888888888888863
No 97
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=47.47 E-value=78 Score=25.10 Aligned_cols=57 Identities=9% Similarity=0.100 Sum_probs=34.1
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
.-|...=-+++..+++..|+++++=|..-.+|.-. +.+..+.+.+.+.++..+|+++
T Consensus 154 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivs 211 (236)
T cd03267 154 LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTS 211 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 44444556788889999999999988754443322 2233333344333355666666
No 98
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.73 E-value=8.9 Score=32.45 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=12.7
Q ss_pred CCcEEEEEcCCCCe
Q psy5985 24 KIQALLIIGGFEVS 37 (153)
Q Consensus 24 ~Id~LvvIGGdgs~ 37 (153)
+.|.++++|||||+
T Consensus 62 ~~d~vi~~GGDGt~ 75 (295)
T PRK01231 62 VCDLVIVVGGDGSL 75 (295)
T ss_pred CCCEEEEEeCcHHH
Confidence 57899999999998
No 99
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=44.79 E-value=1.8e+02 Score=24.17 Aligned_cols=104 Identities=17% Similarity=0.062 Sum_probs=61.0
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe----------------------EEEEEecCCCcCHHHH---HHHhhcCCCEE
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS----------------------FFALKTMGGYCGYLAT---VAGLAGGADAA 64 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~----------------------v~iVEvMGR~aG~LA~---~aglA~gad~i 64 (153)
.+.+++.++.+.+.++++|++.|.-|-+ +-|+=--|.++=.-|. ..+-+.|||.+
T Consensus 20 ~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v 99 (294)
T TIGR02313 20 EEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAA 99 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEE
Confidence 3468889999999999999999988876 2222222222222221 22344699886
Q ss_pred EEcCC---CCCHHHHHHHHHHHHHHHHcCCCeEEEEEeCC--CCCCcChHHHHHHHH
Q psy5985 65 YIYEE---KFSIKDLQQDLYHMASKMAEGVQRGLILRNEK--CNDNYNTDFIYRLYS 116 (153)
Q Consensus 65 liPE~---~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG--~~~~~~~~~l~~~~~ 116 (153)
++.-. +.+.+.+.+..+.+.+. ..+--+++-.-- .....+.+.+.++.+
T Consensus 100 ~v~pP~y~~~~~~~l~~~f~~ia~a---~~~lpv~iYn~P~~tg~~l~~~~l~~L~~ 153 (294)
T TIGR02313 100 MVIVPYYNKPNQEALYDHFAEVADA---VPDFPIIIYNIPGRAAQEIAPKTMARLRK 153 (294)
T ss_pred EEcCccCCCCCHHHHHHHHHHHHHh---ccCCCEEEEeCchhcCcCCCHHHHHHHHh
Confidence 65432 44667887777666532 113446665432 123345567776653
No 100
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=44.39 E-value=21 Score=30.41 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=24.7
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+..+++++.++++++|.+|.|||--++
T Consensus 64 ~~~v~~~~~~~~~~~~D~IIaiGGGS~~ 91 (366)
T PF00465_consen 64 LEDVDEAAEQARKFGADCIIAIGGGSVM 91 (366)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEESHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcC
Confidence 4578999999999999999999996655
No 101
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=44.32 E-value=84 Score=24.49 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~ 92 (153)
+++.+.|+..+++.+. . -.+-+.-|...=-+++..+++..++++++=|..-.+|.- .+.+..+.+++.+..+
T Consensus 125 ~~~~~~l~~~~l~~~~-----~--~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 197 (228)
T PRK10584 125 NGAKALLEQLGLGKRL-----D--HLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG 197 (228)
T ss_pred HHHHHHHHHcCCHhHh-----h--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 4455566666654221 0 011123333333477888899999999997764433322 2223333334433234
Q ss_pred eEEEEEe
Q psy5985 93 RGLILRN 99 (153)
Q Consensus 93 ~~iIvva 99 (153)
..+|+++
T Consensus 198 ~tii~~s 204 (228)
T PRK10584 198 TTLILVT 204 (228)
T ss_pred CEEEEEe
Confidence 5666666
No 102
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=44.28 E-value=84 Score=24.27 Aligned_cols=78 Identities=10% Similarity=0.168 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCe
Q psy5985 15 QIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQR 93 (153)
Q Consensus 15 ~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~ 93 (153)
++.+.++..+++.+. + -.+-+.-|...=-++++.+++..|+++++=|..-.+|... +.+..+.+++.+..+.
T Consensus 120 ~~~~~l~~~~l~~~~-----~--~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 192 (218)
T cd03255 120 RAEELLERVGLGDRL-----N--HYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGT 192 (218)
T ss_pred HHHHHHHHcCCchhh-----h--cChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 445566666664321 0 1112233333445788899999999999977643333222 2233333344332345
Q ss_pred EEEEEe
Q psy5985 94 GLILRN 99 (153)
Q Consensus 94 ~iIvva 99 (153)
.+|+++
T Consensus 193 tii~~s 198 (218)
T cd03255 193 TIVVVT 198 (218)
T ss_pred eEEEEE
Confidence 677766
No 103
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=44.08 E-value=2.3e+02 Score=25.87 Aligned_cols=74 Identities=15% Similarity=0.098 Sum_probs=47.7
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe-------------------------EEEEEecCCCcCHHHHHH-HhhcCCCE
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS-------------------------FFALKTMGGYCGYLATVA-GLAGGADA 63 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~-------------------------v~iVEvMGR~aG~LA~~a-glA~gad~ 63 (153)
......+.+.|.+++++.|.|+-.++.+ ..|....|-. ..+.... -+..|+|.
T Consensus 179 d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~av~~~-~~~~ra~~Lv~aGvd~ 257 (502)
T PRK07107 179 GTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGAGINTR-DYAERVPALVEAGADV 257 (502)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeeeccChh-hHHHHHHHHHHhCCCe
Confidence 4568899999999999999999777665 3333333322 2334333 34469999
Q ss_pred EEEcCCCCCHHHHHHHHHHHH
Q psy5985 64 AYIYEEKFSIKDLQQDLYHMA 84 (153)
Q Consensus 64 iliPE~~~~~~~l~~~i~~i~ 84 (153)
+.++-.+-.-+...+.|+.+.
T Consensus 258 i~vd~a~g~~~~~~~~i~~ir 278 (502)
T PRK07107 258 LCIDSSEGYSEWQKRTLDWIR 278 (502)
T ss_pred EeecCcccccHHHHHHHHHHH
Confidence 999855544344455555543
No 104
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=43.83 E-value=1.9e+02 Score=24.18 Aligned_cols=99 Identities=19% Similarity=0.170 Sum_probs=58.3
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe-----------------------EEEEEecCCCcCH-HHH-HHHhhcCCCEEE
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS-----------------------FFALKTMGGYCGY-LAT-VAGLAGGADAAY 65 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~-----------------------v~iVEvMGR~aG~-LA~-~aglA~gad~il 65 (153)
+.+++.++.|.+.++|++++.|..|-+ -.++=| |.+.-. +.+ ..+-..|||.++
T Consensus 28 ~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv-~~~t~~~i~~~~~a~~~Gadav~ 106 (303)
T PRK03620 28 AAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGA-GGGTAQAIEYAQAAERAGADGIL 106 (303)
T ss_pred HHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec-CCCHHHHHHHHHHHHHhCCCEEE
Confidence 468889999999999999999998887 223333 322111 111 122335999876
Q ss_pred EcCC---CCCHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCcChHHHHHHH
Q psy5985 66 IYEE---KFSIKDLQQDLYHMASKMAEGVQRGLILRNEKCNDNYNTDFIYRLY 115 (153)
Q Consensus 66 iPE~---~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG~~~~~~~~~l~~~~ 115 (153)
+.-. +.+-+.+.+..+.+.+ .-+--|++-.- .....+.+.+.++.
T Consensus 107 ~~pP~y~~~~~~~i~~~f~~va~----~~~lpi~lYn~-~g~~l~~~~l~~L~ 154 (303)
T PRK03620 107 LLPPYLTEAPQEGLAAHVEAVCK----STDLGVIVYNR-DNAVLTADTLARLA 154 (303)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHH----hCCCCEEEEcC-CCCCCCHHHHHHHH
Confidence 6443 2355677766655543 22345666652 12234566777764
No 105
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.42 E-value=88 Score=24.18 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=35.4
Q ss_pred EEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 41 LKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 41 VEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
-+.-|...=-+++..+++..|+++++-|..-.+|.-. +.+..+.+++.+.++..+|+++
T Consensus 130 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 189 (214)
T cd03297 130 AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT 189 (214)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEe
Confidence 3445555566888999999999999988644443322 2223333344332345666666
No 106
>KOG4435|consensus
Probab=43.32 E-value=21 Score=32.33 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 12 KLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 12 ~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
..++.++.+.... |.++|.|||||.
T Consensus 105 qak~l~e~~~t~~-Dii~VaGGDGT~ 129 (535)
T KOG4435|consen 105 QAKALAEAVDTQE-DIIYVAGGDGTI 129 (535)
T ss_pred HHHHHHHHhccCC-CeEEEecCCCcH
Confidence 3555666777666 999999999998
No 107
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=43.31 E-value=91 Score=24.50 Aligned_cols=49 Identities=6% Similarity=0.177 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 50 YLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 50 ~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
-+++..+++..|+++++=|.. .|.+.. +.+..+.+++.+.++..+|+++
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~-~~l~~~l~~~~~~~g~tvii~s 203 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNA-DSIFQLLGELNRLQGTAFLVVT 203 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHHhCCCEEEEEe
Confidence 367888899999999997754 443332 2233333344332345677766
No 108
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=43.31 E-value=89 Score=24.59 Aligned_cols=79 Identities=11% Similarity=0.073 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~ 92 (153)
+++.+.++..+++.+. + -.+-+.-|...=-+++..+++..|+++++=|..-.+|... +.+..+.+++.+.++
T Consensus 111 ~~~~~~l~~~gl~~~~-----~--~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 183 (236)
T TIGR03864 111 ERIAALLARLGLAERA-----D--DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQG 183 (236)
T ss_pred HHHHHHHHHcCChhhh-----c--CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3445566666665321 0 1122344444445788999999999999977644333222 222223334433234
Q ss_pred eEEEEEe
Q psy5985 93 RGLILRN 99 (153)
Q Consensus 93 ~~iIvva 99 (153)
..+|+++
T Consensus 184 ~tiii~s 190 (236)
T TIGR03864 184 LSVLWAT 190 (236)
T ss_pred CEEEEEe
Confidence 5666665
No 109
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.90 E-value=85 Score=24.78 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=33.3
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-+++..+++..|+++++=|..-.+|.-. +.+..+.+++.+..+..+|+++
T Consensus 136 ~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~s 194 (239)
T cd03296 136 QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVT 194 (239)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 334444445788999999999999988644333222 2222333344332244666665
No 110
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=41.84 E-value=1e+02 Score=23.88 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~ 92 (153)
+++.+.|+..+++.+. . -.+-+.-|...=-+++..+++..|+++++=|..-.+|... +.+..+.+++.+..+
T Consensus 107 ~~~~~~l~~~~l~~~~-----~--~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~ 179 (213)
T TIGR01277 107 EKVVDAAQQVGIADYL-----D--RLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQ 179 (213)
T ss_pred HHHHHHHHHcCcHHHh-----h--CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 3445566666664321 0 1112344444445778888999999999987644443322 222233334443335
Q ss_pred eEEEEEe
Q psy5985 93 RGLILRN 99 (153)
Q Consensus 93 ~~iIvva 99 (153)
..+|+++
T Consensus 180 ~tii~vs 186 (213)
T TIGR01277 180 RTLLMVT 186 (213)
T ss_pred CEEEEEe
Confidence 6777776
No 111
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=41.71 E-value=90 Score=25.20 Aligned_cols=54 Identities=19% Similarity=0.107 Sum_probs=30.7
Q ss_pred CCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 46 GYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 46 R~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
...=-++++.+|+..|+++++=|..-.+|.-. +.+..+.+++.+..+..+|+++
T Consensus 119 Ge~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivs 173 (246)
T cd03237 119 GELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVE 173 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 33335678888999999999988644333221 2222333344333345566655
No 112
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.85 E-value=1.1e+02 Score=23.84 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~ 92 (153)
+++.+.++..+++.+. . -.+-+.-|...=-++++.+++..|+++++=|..-.+|... +.+..+.+++.+..+
T Consensus 110 ~~~~~~l~~~~l~~~~-----~--~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~ 182 (220)
T cd03293 110 ERAEELLELVGLSGFE-----N--AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETG 182 (220)
T ss_pred HHHHHHHHHcCChhhh-----h--CCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3445566666664221 0 1122445555556888999999999999988644443322 222223333332234
Q ss_pred eEEEEEe
Q psy5985 93 RGLILRN 99 (153)
Q Consensus 93 ~~iIvva 99 (153)
..+|+++
T Consensus 183 ~tiii~s 189 (220)
T cd03293 183 KTVLLVT 189 (220)
T ss_pred CEEEEEe
Confidence 5677766
No 113
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=40.72 E-value=2e+02 Score=24.00 Aligned_cols=60 Identities=15% Similarity=0.115 Sum_probs=41.4
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe---------------------------EEEEEecCCCcCHHHHHHHhhcCCCE
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS---------------------------FFALKTMGGYCGYLATVAGLAGGADA 63 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~---------------------------v~iVEvMGR~aG~LA~~aglA~gad~ 63 (153)
+....+++.++++++..++.+||=+.. .|--=+.+.-.|.|-..|....=.-+
T Consensus 94 e~s~~v~~w~~~~~v~~ii~~~g~~~~~~~e~~~v~~va~~~~~~~~l~~~~~~~~~~G~I~G~~g~ll~e~~~r~i~a~ 173 (244)
T COG1938 94 EISNAVVEWAEENGVEEVISLGGMPARLREEKPSVYGVATSEEKLEKLKDLGAEPLEEGTIVGPSGALLNECLKRGIPAL 173 (244)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCcccccCCCceEEEecchhhhhHHhhcCCCccccceeecccHHHHHHHHHcCCCeE
Confidence 456788899999999999999976554 11111445556666556666555667
Q ss_pred EEEcCCC
Q psy5985 64 AYIYEEK 70 (153)
Q Consensus 64 iliPE~~ 70 (153)
+|+||..
T Consensus 174 ~ll~et~ 180 (244)
T COG1938 174 VLLAETF 180 (244)
T ss_pred EEecccc
Confidence 8888863
No 114
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=40.68 E-value=62 Score=27.05 Aligned_cols=26 Identities=12% Similarity=0.340 Sum_probs=20.1
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCC
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFE 35 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdg 35 (153)
.+..+++++.+++.+.|.+|.|||--
T Consensus 64 ~~~v~~~~~~~~~~~~d~IIaiGGGs 89 (332)
T cd07766 64 FEEVKEAVERARAAEVDAVIAVGGGS 89 (332)
T ss_pred HHHHHHHHHHHHhcCcCEEEEeCCch
Confidence 34577888888888888888888643
No 115
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=40.06 E-value=1.4e+02 Score=21.52 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=51.8
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe--------EEEEEecCCCcCHHH-HHHHhhc---CCCEEEEcCC-CC-CHHHH
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS--------FFALKTMGGYCGYLA-TVAGLAG---GADAAYIYEE-KF-SIKDL 76 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~--------v~iVEvMGR~aG~LA-~~aglA~---gad~iliPE~-~~-~~~~l 76 (153)
..++.+++++++.+++-+++++++... +-+|.---...|.++ +.+|+.. ...++++|=+ |+ +.+.+
T Consensus 25 ~li~~~l~~l~~~~~~~Ivvv~~~~~~~~~~~~~~~~~v~~~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~~~~l 104 (160)
T PF12804_consen 25 PLIERVLEALREAGVDDIVVVTGEEEIYEYLERYGIKVVVDPEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLSPELL 104 (160)
T ss_dssp EHHHHHHHHHHHHTESEEEEEESTHHHHHHHTTTTSEEEE-STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-HHHH
T ss_pred cHHHHHHHHhhccCCceEEEecChHHHHHHHhccCceEEEeccccCChHHHHHHHHHhcccCCCcEEEeCCccccCHHHH
Confidence 358999999999999999999999643 444555443577776 4555553 3455666644 55 44333
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeCC
Q psy5985 77 QQDLYHMASKMAEGVQRGLILRNEK 101 (153)
Q Consensus 77 ~~~i~~i~~~~~~~~~~~iIvvaEG 101 (153)
+. +.+.+.+.....+++...+
T Consensus 105 -~~---l~~~~~~~~~~i~~~~~~~ 125 (160)
T PF12804_consen 105 -RR---LLEALEKSPADIVVPVFRG 125 (160)
T ss_dssp -HH---HHHHHHHTTTSEEEEEETT
T ss_pred -HH---HHHHHhccCCcEEEEEECC
Confidence 33 3334443333344455544
No 116
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.99 E-value=1.2e+02 Score=22.74 Aligned_cols=50 Identities=10% Similarity=0.207 Sum_probs=29.2
Q ss_pred CHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 49 GYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 49 G~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
=-+++..+++..|+++++=|..-.+|.-. +.+..+.+++.+ ++..+|+++
T Consensus 102 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~t 152 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSS 152 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEC
Confidence 34678888889999999988754443222 222223334433 245566665
No 117
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=39.97 E-value=1.1e+02 Score=23.03 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=29.8
Q ss_pred CHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 49 GYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 49 G~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
=-+++..+++..|+++++=|..-.+|.- .+.+..+.+++++..+..+|+++-
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh 156 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3477778888899999997764333321 122333333444322456777763
No 118
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=39.88 E-value=1e+02 Score=24.45 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=30.7
Q ss_pred cCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 48 CGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 48 aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
.=-+++..+++..|+++++=|..-.+|.. .+.+..+.+++.+..+..+|+++-
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH 207 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 33467888899999999997764333322 122222333333323557777763
No 119
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=39.85 E-value=1.1e+02 Score=24.11 Aligned_cols=79 Identities=10% Similarity=0.051 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCe
Q psy5985 15 QIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQR 93 (153)
Q Consensus 15 ~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~ 93 (153)
++.+.|+..+++.+. . -.+-+.-|...=-+++..+++..|+++++=|..-.+|... +.+..+.+++.+..+.
T Consensus 94 ~~~~~l~~~~l~~~~-----~--~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~ 166 (230)
T TIGR01184 94 IVEEHIALVGLTEAA-----D--KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV 166 (230)
T ss_pred HHHHHHHHcCCHHHH-----c--CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 455666666664321 0 1223455555566788999999999999988644333222 2222233333332345
Q ss_pred EEEEEeC
Q psy5985 94 GLILRNE 100 (153)
Q Consensus 94 ~iIvvaE 100 (153)
.+|+++-
T Consensus 167 tii~~sH 173 (230)
T TIGR01184 167 TVLMVTH 173 (230)
T ss_pred EEEEEeC
Confidence 6777763
No 120
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=39.84 E-value=1e+02 Score=24.12 Aligned_cols=57 Identities=7% Similarity=0.074 Sum_probs=33.9
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-+++..+++..|+++++=|.. +|.+.. +.+..+.+.+.+.++..+|+++
T Consensus 137 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~-~~l~~~l~~~~~~~~~tvii~s 195 (225)
T PRK10247 137 ELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNK-HNVNEIIHRYVREQNIAVLWVT 195 (225)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH-HHHHHHHHHHHHhcCCEEEEEE
Confidence 44444455578899999999999996653 444332 2232233344332345677776
No 121
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=39.81 E-value=1.9e+02 Score=25.82 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=42.6
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe----------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS----------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ 77 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~----------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~ 77 (153)
..+...+.+-|++.+|+....+.|+.|+ ..+| +-++..+++|-+---.-|..++..| |+-++...
T Consensus 213 ~gd~~el~~lL~~~Gi~v~~~~~g~~t~~ei~~~~~A~lnlv-~~~~~~~~~A~~Leer~GiP~~~~~--p~Gi~~T~ 287 (461)
T TIGR01860 213 QGDTQVLQKYWDKMGIQVIAHFTGNGTYDDLRCMHRAQLNVV-NCARSAGYIANELKKRYGIPRLDVD--TWGFNYMA 287 (461)
T ss_pred cccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHhcccCcEEEE-ECchHHHHHHHHHHHHhCCCeecCC--cCCHHHHH
Confidence 3567889999999999999999999887 3333 3334445544332223577777776 56554433
No 122
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.77 E-value=1e+02 Score=24.15 Aligned_cols=80 Identities=13% Similarity=0.043 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCC
Q psy5985 13 LPQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGV 91 (153)
Q Consensus 13 ~~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~ 91 (153)
.+++.+.|+..+++.+. + -.+-+.-|...=-++++.+++..|+++++=|..-.+|... +.+..+.+++.+..
T Consensus 122 ~~~~~~~l~~~~l~~~~-----~--~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 194 (241)
T cd03256 122 KQRALAALERVGLLDKA-----Y--QRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREE 194 (241)
T ss_pred HHHHHHHHHHcCChhhh-----C--CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc
Confidence 34455566666664321 0 1122334444445788899999999999987643333222 22222333343323
Q ss_pred CeEEEEEe
Q psy5985 92 QRGLILRN 99 (153)
Q Consensus 92 ~~~iIvva 99 (153)
+..+|+++
T Consensus 195 ~~tii~~t 202 (241)
T cd03256 195 GITVIVSL 202 (241)
T ss_pred CCEEEEEe
Confidence 45666666
No 123
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=39.75 E-value=1.6e+02 Score=23.21 Aligned_cols=60 Identities=23% Similarity=0.258 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCCe----------------------EEEEEe---cCCCcCHHHH---HHHhhcCCCE
Q psy5985 12 KLPQIAAKLKELKIQALLIIGGFEVS----------------------FFALKT---MGGYCGYLAT---VAGLAGGADA 63 (153)
Q Consensus 12 ~~~~~~~~L~~~~Id~LvvIGGdgs~----------------------v~iVEv---MGR~aG~LA~---~aglA~gad~ 63 (153)
..+.+++.+++++++.++.+||-.+- ..-++. .|.-.|..++ .+..++=.-+
T Consensus 35 ~a~~vld~a~~~gv~~iitLgG~~~~~~~trp~V~~~at~~el~~~l~~~g~~~~~~~g~i~G~~glLl~~a~~~gi~ai 114 (188)
T TIGR00162 35 LVNAIIDVAKKYGARMIYTLGGYGVGKLVEEPYVYGAATSPELVEELKEHGVKFREPGGGIIGASGLLLGVSELEGIPGA 114 (188)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCcCCCCCCCCceEEEeCCHHHHHHHHhcCCeeecCCCccccHHHHHHHHHHHCCCCeE
Confidence 46778899999999999999995442 111232 4444555554 4455555666
Q ss_pred EEEcCCCC
Q psy5985 64 AYIYEEKF 71 (153)
Q Consensus 64 iliPE~~~ 71 (153)
+|+.|.|.
T Consensus 115 ~L~~e~p~ 122 (188)
T TIGR00162 115 CLMGETPG 122 (188)
T ss_pred EEEEeCCC
Confidence 77777653
No 124
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=38.74 E-value=1.2e+02 Score=23.50 Aligned_cols=78 Identities=8% Similarity=0.116 Sum_probs=42.3
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCe
Q psy5985 15 QIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQR 93 (153)
Q Consensus 15 ~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~ 93 (153)
++.+.++.++++.+. + -.+-+.-|...=-+++..+++..++++++=|..-.+|.-. +.+..+.+++.+..+.
T Consensus 121 ~~~~~l~~~~l~~~~----~---~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 193 (221)
T TIGR02211 121 RAYEMLEKVGLEHRI----N---HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNT 193 (221)
T ss_pred HHHHHHHHcCChhhh----h---CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC
Confidence 445566666664321 0 1122344455556788889999999999977644443222 2222233344332345
Q ss_pred EEEEEe
Q psy5985 94 GLILRN 99 (153)
Q Consensus 94 ~iIvva 99 (153)
.+|+++
T Consensus 194 tii~~t 199 (221)
T TIGR02211 194 SFLVVT 199 (221)
T ss_pred EEEEEe
Confidence 666665
No 125
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=38.31 E-value=1.6e+02 Score=21.66 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCcChHHHHHHHHhhcCCCceeeeeeCCccccCCCCCcceEe
Q psy5985 70 KFSIKDLQQDLYHMASKMAEGVQRGLILRNEKCNDNYNTDFIYRLYSEEGKGLFSARQNVLAKHDSAYEEEGMYIT 145 (153)
Q Consensus 70 ~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG~~~~~~~~~l~~~~~~e~~~~~~~R~~vLGh~QR~~~p~~~~~~ 145 (153)
..+.+++.+.++++ ...++.+||++.|.+ ++.+.+.+.+.. .-+.+=..+++ ..-+++|+.-+|+
T Consensus 42 ~t~~eei~~~~~~~----l~~~digIIlIte~~-----a~~i~~~I~~~~-~~~PaIieIP~-k~~~y~~~~d~i~ 106 (115)
T TIGR01101 42 NTTVSEIEDCFNRF----LKRDDIAIILINQHI-----AEMIRHAVDAHT-RSIPAVLEIPS-KDHPYDASKDSIL 106 (115)
T ss_pred CCCHHHHHHHHHHH----hhcCCeEEEEEcHHH-----HHHhHHHHHhcC-CcCCEEEEECC-CCCCCCCcccHHH
Confidence 34567776665542 246789999999986 355666655432 33566677777 3367888765543
No 126
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=38.27 E-value=34 Score=28.89 Aligned_cols=79 Identities=22% Similarity=0.166 Sum_probs=48.6
Q ss_pred cCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCCCeEEEEEecC-CCcC-HHHHHHHhh----cC-----CCEEEEcCCCCC
Q psy5985 4 TKRTLPEKKLPQIAAKLKELKIQALLIIGGFEVSFFALKTMG-GYCG-YLATVAGLA----GG-----ADAAYIYEEKFS 72 (153)
Q Consensus 4 TsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMG-R~aG-~LA~~aglA----~g-----ad~iliPE~~~~ 72 (153)
|+|......++..++.+.+.+|.-++.++||.. +| +..+ ++-..-.+. .. .-...-||....
T Consensus 85 tc~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp-------~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~ 157 (291)
T COG0685 85 TCRDRNRIEIISILKGAAALGIRNILALRGDPP-------AGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPE 157 (291)
T ss_pred cccCCCHHHHHHHHHHHHHhCCceEEEecCCCC-------CCCCCCccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCcc
Confidence 455554567889999999999999999999996 33 3344 333222222 12 223566887655
Q ss_pred HHHHHHHHHHHHHHHHc
Q psy5985 73 IKDLQQDLYHMASKMAE 89 (153)
Q Consensus 73 ~~~l~~~i~~i~~~~~~ 89 (153)
-.+...++..+.+|+..
T Consensus 158 s~~~~~d~~~lkrKv~a 174 (291)
T COG0685 158 SKDVKEDIKRLKRKVDA 174 (291)
T ss_pred chhhHHHHHHHHHHHhc
Confidence 44455555555555554
No 127
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=38.16 E-value=1.2e+02 Score=23.16 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=32.3
Q ss_pred cCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 44 MGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 44 MGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
-|...=-+++..+++..|+++++=|..-.+|.-. +.+..+.+++.+ .+..+|+++
T Consensus 128 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~t 183 (208)
T cd03268 128 SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISS 183 (208)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEc
Confidence 3334445788888999999999988744443322 223333434443 345666665
No 128
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=37.80 E-value=21 Score=29.87 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=13.6
Q ss_pred cCCcEEEEEcCCCCe
Q psy5985 23 LKIQALLIIGGFEVS 37 (153)
Q Consensus 23 ~~Id~LvvIGGdgs~ 37 (153)
...|.++++||||++
T Consensus 54 ~~~d~ivvlGGDGtl 68 (281)
T COG0061 54 EKADLIVVLGGDGTL 68 (281)
T ss_pred cCceEEEEeCCcHHH
Confidence 578999999999998
No 129
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=37.74 E-value=1.3e+02 Score=23.94 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=32.2
Q ss_pred CCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 45 GGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 45 GR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvva 99 (153)
|...=-+++..+++..|+++++=|..-.+|.- .+.+..+.+++.+..+..+|+++
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~s 211 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE 211 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 33333567888899999999998864444322 22333344444432345666665
No 130
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.40 E-value=1.2e+02 Score=23.72 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=33.9
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=.+++..+++..++++++=|..-.+|... +.+..+.+.+.+..+..+|+++
T Consensus 140 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~s 198 (233)
T cd03258 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLIT 198 (233)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 344455556888889999999999988644444322 2222233333332245666666
No 131
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=37.31 E-value=65 Score=27.79 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=20.5
Q ss_pred CcHHHHHHHHHHcCC---cEEEEEcCCC
Q psy5985 11 KKLPQIAAKLKELKI---QALLIIGGFE 35 (153)
Q Consensus 11 e~~~~~~~~L~~~~I---d~LvvIGGdg 35 (153)
+...++.+.+.+.+. |.++.|||--
T Consensus 60 ~~v~~~~~~~~~~~~~r~d~iIaiGGGs 87 (346)
T cd08196 60 EAVSSVIESLRQNGARRNTHLVAIGGGI 87 (346)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECChH
Confidence 567788899999999 7999998743
No 132
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=37.27 E-value=1.3e+02 Score=26.21 Aligned_cols=33 Identities=39% Similarity=0.533 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCEEEEcCC---------CCCHHHHHHHHHH
Q psy5985 50 YLATVAGLAGGADAAYIYEE---------KFSIKDLQQDLYH 82 (153)
Q Consensus 50 ~LA~~aglA~gad~iliPE~---------~~~~~~l~~~i~~ 82 (153)
|-.+.++++.|||.||+-|. .|+.++|.+.++.
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ 57 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVEL 57 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHH
Confidence 45588999999999999986 4888888877653
No 133
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=37.11 E-value=1.3e+02 Score=23.06 Aligned_cols=77 Identities=12% Similarity=0.143 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCe
Q psy5985 15 QIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQR 93 (153)
Q Consensus 15 ~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~ 93 (153)
++.+.|+..+++.+.- -.+-+.-|...=-+++..+++..|+++++=|..-.+|.-. +.+..+.+++.+ ++.
T Consensus 112 ~~~~~l~~~~l~~~~~-------~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~ 183 (213)
T cd03235 112 KVDEALERVGLSELAD-------RQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGM 183 (213)
T ss_pred HHHHHHHHcCCHHHHh-------CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCC
Confidence 4445566666543210 1123444555556888899999999999977643333222 222233334443 345
Q ss_pred EEEEEe
Q psy5985 94 GLILRN 99 (153)
Q Consensus 94 ~iIvva 99 (153)
.+|+++
T Consensus 184 tvi~~s 189 (213)
T cd03235 184 TILVVT 189 (213)
T ss_pred EEEEEe
Confidence 666666
No 134
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.03 E-value=1.3e+02 Score=23.26 Aligned_cols=79 Identities=13% Similarity=0.198 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~ 92 (153)
+++.+.|+..+++.+. . -.+-+.-|...=.+++..+++..|+++++=|..-.+|.- .+.+..+.+.+.+..+
T Consensus 110 ~~~~~~l~~~~l~~~~-----~--~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 182 (220)
T cd03265 110 ERIDELLDFVGLLEAA-----D--RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG 182 (220)
T ss_pred HHHHHHHHHcCCHHHh-----h--CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcC
Confidence 3455566666664321 1 122345556666788999999999999998864443322 2222223333333234
Q ss_pred eEEEEEe
Q psy5985 93 RGLILRN 99 (153)
Q Consensus 93 ~~iIvva 99 (153)
..+|+++
T Consensus 183 ~tvi~~t 189 (220)
T cd03265 183 MTILLTT 189 (220)
T ss_pred CEEEEEe
Confidence 5666666
No 135
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.79 E-value=1.2e+02 Score=24.00 Aligned_cols=55 Identities=11% Similarity=0.186 Sum_probs=31.0
Q ss_pred CCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 45 GGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 45 GR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvva 99 (153)
|...=-+++..+++..|+++++=|..-.+|.- .+.+..+.+++.+..+..+|+++
T Consensus 138 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~s 193 (242)
T cd03295 138 GGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVT 193 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 33334478888999999999997764333222 12222233344332345666665
No 136
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=36.75 E-value=1.3e+02 Score=23.32 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=33.4
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-+++..+++..++++++=|..-.+|... +.+..+.+++.+..+..+|+++
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 203 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFIT 203 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 344444455788889999999999977644433322 2222333344332245666666
No 137
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=36.67 E-value=1.3e+02 Score=23.67 Aligned_cols=57 Identities=18% Similarity=0.103 Sum_probs=33.1
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-++++.+++..|+++++=|.. .|.+......+ +.+.+.+.++..+|+++
T Consensus 129 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~-~l~~~~~~~~~tiii~s 187 (232)
T PRK10771 129 QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLT-LVSQVCQERQLTLLMVS 187 (232)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEE
Confidence 44444555677888899999999997654 44433222222 33333332345677766
No 138
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.61 E-value=1.3e+02 Score=23.08 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCe
Q psy5985 15 QIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQR 93 (153)
Q Consensus 15 ~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~ 93 (153)
++.+.|+..+++.+. . -.+-+.-|...=.+++..+++..++++++=|..-.+|... +.+..+.+++.+.++.
T Consensus 108 ~~~~~l~~~~l~~~~-----~--~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 180 (211)
T cd03298 108 AIEVALARVGLAGLE-----K--RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKM 180 (211)
T ss_pred HHHHHHHHcCCHHHH-----h--CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 455566666654221 0 1122444555556788889999999999987644333222 2222233344332345
Q ss_pred EEEEEe
Q psy5985 94 GLILRN 99 (153)
Q Consensus 94 ~iIvva 99 (153)
.+|+++
T Consensus 181 tii~~s 186 (211)
T cd03298 181 TVLMVT 186 (211)
T ss_pred EEEEEe
Confidence 666666
No 139
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.52 E-value=1.2e+02 Score=24.86 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=31.6
Q ss_pred CCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 45 GGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 45 GR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
|...=-+++..+++..++++++=|..-.+|... +.+..+.+++.+..+..+|+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~t 201 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISIT 201 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 333345778899999999999988754444332 2222233344332344555555
No 140
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=36.47 E-value=42 Score=23.28 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCcEEEEEcC
Q psy5985 13 LPQIAAKLKELKIQALLIIGG 33 (153)
Q Consensus 13 ~~~~~~~L~~~~Id~LvvIGG 33 (153)
++++.+.|++.++|++++-..
T Consensus 2 l~rl~~~m~~~gid~lll~~~ 22 (132)
T PF01321_consen 2 LERLRAAMAEAGIDALLLTSP 22 (132)
T ss_dssp HHHHHHHHHHTT-SEEEEESH
T ss_pred HHHHHHHHHHCCCCEEEEcCh
Confidence 568889999999999998765
No 141
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=36.14 E-value=2.5e+02 Score=23.17 Aligned_cols=103 Identities=16% Similarity=0.105 Sum_probs=58.0
Q ss_pred CCcHHHHHHHHHHc-CCcEEEEEcCCCCe----------------------E-EEEEecCCCc-CHHHH-HHHhhcCCCE
Q psy5985 10 EKKLPQIAAKLKEL-KIQALLIIGGFEVS----------------------F-FALKTMGGYC-GYLAT-VAGLAGGADA 63 (153)
Q Consensus 10 ~e~~~~~~~~L~~~-~Id~LvvIGGdgs~----------------------v-~iVEvMGR~a-G~LA~-~aglA~gad~ 63 (153)
.+.+++.++.+.+. +++++++.|--|=+ + .++=|..-+. --+.+ ..+...|||.
T Consensus 20 ~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~ 99 (288)
T cd00954 20 EDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDA 99 (288)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCE
Confidence 34688888999889 99999999987766 2 2222221111 00111 1223369999
Q ss_pred EEE-cCC--CCCHHHHHHHHHHHHHHHHcCCCeEEEEEeCC--CCCCcChHHHHHHH
Q psy5985 64 AYI-YEE--KFSIKDLQQDLYHMASKMAEGVQRGLILRNEK--CNDNYNTDFIYRLY 115 (153)
Q Consensus 64 ili-PE~--~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG--~~~~~~~~~l~~~~ 115 (153)
+++ |.. +.+-+.+.+..+.+.+. -.+--|++-.-= .+...+.+.+.++.
T Consensus 100 v~~~~P~y~~~~~~~i~~~~~~v~~a---~~~lpi~iYn~P~~tg~~l~~~~~~~L~ 153 (288)
T cd00954 100 ISAITPFYYKFSFEEIKDYYREIIAA---AASLPMIIYHIPALTGVNLTLEQFLELF 153 (288)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHHh---cCCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 875 554 34567777776665432 113346665432 12334556666664
No 142
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=36.08 E-value=72 Score=27.52 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHcCC----cEEEEEcCCCCeEEEEEecCCCcCHHHHHHH--hhcCCCEEEEcC
Q psy5985 12 KLPQIAAKLKELKI----QALLIIGGFEVSFFALKTMGGYCGYLATVAG--LAGGADAAYIYE 68 (153)
Q Consensus 12 ~~~~~~~~L~~~~I----d~LvvIGGdgs~v~iVEvMGR~aG~LA~~ag--lA~gad~iliPE 68 (153)
..+++++.+.+.+. |.+|.||| ...+.+|=.+| ...|..+|.+|=
T Consensus 72 ~v~~~~~~l~~~~~~r~~d~IVaiGG------------G~v~D~ak~~A~~~~rg~p~i~VPT 122 (354)
T cd08199 72 TVLKIVDALDAFGISRRREPVLAIGG------------GVLTDVAGLAASLYRRGTPYVRIPT 122 (354)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEECC------------cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 45555566666666 66666665 34555554444 334566666665
No 143
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=36.02 E-value=1.3e+02 Score=24.31 Aligned_cols=80 Identities=9% Similarity=0.053 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~ 92 (153)
+++.+.|+..+++.++ . -.+-+.-|...=-+++..+++..++++++=|..-.+|.-. +.+..+.+.+.+..+
T Consensus 126 ~~~~~~l~~~~l~~~~-----~--~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~ 198 (265)
T PRK10575 126 EKVEEAISLVGLKPLA-----H--RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG 198 (265)
T ss_pred HHHHHHHHHcCCHHHh-----c--CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 3455566666653210 0 1223455555667888999999999999988644443322 222223333433234
Q ss_pred eEEEEEeC
Q psy5985 93 RGLILRNE 100 (153)
Q Consensus 93 ~~iIvvaE 100 (153)
..+|+++-
T Consensus 199 ~tiii~sH 206 (265)
T PRK10575 199 LTVIAVLH 206 (265)
T ss_pred CEEEEEeC
Confidence 55666653
No 144
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.93 E-value=1.4e+02 Score=23.61 Aligned_cols=59 Identities=12% Similarity=0.043 Sum_probs=34.3
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHHH-HHHHHHHHHHcCCCeEEEEEeC
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQ-DLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~~-~i~~i~~~~~~~~~~~iIvvaE 100 (153)
+.-|...=-+++..+++..++++++=|..-.+|.-.. .+..+.+.+...++..+|+++-
T Consensus 129 ~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH 188 (235)
T cd03299 129 TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTH 188 (235)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 3444455567888999999999999887444433221 2222233333323556777763
No 145
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.85 E-value=1.5e+02 Score=22.28 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=29.4
Q ss_pred cCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 48 CGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 48 aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
.=-+++..+++..++++++=|..-.+|.-. +.+..+.+++.+..+..+|+++
T Consensus 106 ~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 158 (178)
T cd03229 106 QQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVT 158 (178)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 334677888889999999977643333221 2222233344432245677766
No 146
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=35.81 E-value=1.7e+02 Score=22.29 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=31.1
Q ss_pred cCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHH-HHHHHHHHcCCCeEEEEEe
Q psy5985 44 MGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDL-YHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 44 MGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i-~~i~~~~~~~~~~~iIvva 99 (153)
-|...=-+++..+++..|+++++=|..-.+|.-. +.+ +.+.+...+ ++..+|+++
T Consensus 129 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~s 185 (204)
T cd03250 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVT 185 (204)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEe
Confidence 3334445778889999999999977644443322 222 222222222 245666665
No 147
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.65 E-value=1.3e+02 Score=24.57 Aligned_cols=57 Identities=14% Similarity=0.080 Sum_probs=32.0
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
.-|...=-+++..+++..|+++++=|..-.+|... +.+..+.+++.+..+..||+++
T Consensus 141 LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivs 198 (279)
T PRK13635 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSIT 198 (279)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 33333334678888999999999988744433322 2222333344433345555554
No 148
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=35.61 E-value=1.5e+02 Score=22.67 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=32.2
Q ss_pred CCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 45 GGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 45 GR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
|...=.+++..+++..++++++=|..-.+|.-. +.+..+.+++.+ ++..+|+++-
T Consensus 114 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh 169 (194)
T cd03213 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIH 169 (194)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Confidence 333344778888999999999977644333222 222233334433 3556777764
No 149
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.57 E-value=1.3e+02 Score=23.04 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=33.3
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-++++.+++..|+++++=|..-.+|.- .+.+..+.+++.+..+..+|+++
T Consensus 130 ~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 188 (213)
T cd03259 130 ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVT 188 (213)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 33444444578889999999999998764433322 22222233333332345677766
No 150
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=35.45 E-value=26 Score=22.49 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 13 LPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 13 ~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
..++++.|++|+|| +.-||+-|+
T Consensus 12 ~p~~a~vf~~~gID--fCCgG~~~L 34 (56)
T PF04405_consen 12 DPRAARVFRKYGID--FCCGGNRSL 34 (56)
T ss_pred ChHHHHHHHHcCCc--ccCCCCchH
Confidence 45678899999999 457777653
No 151
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=35.34 E-value=47 Score=31.79 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=46.7
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHc
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAE 89 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~~~i~~i~~~~~~ 89 (153)
.++-.++++.|++.+|+ ++++-||-. +.+-.+|-.-|+. ....=++||.+. +.|+ +++
T Consensus 539 R~~a~~aI~~L~~~Gi~-~~mLTGDn~---------~~A~~iA~~lGId-~v~AellPedK~------~~V~----~l~- 596 (713)
T COG2217 539 RPDAKEAIAALKALGIK-VVMLTGDNR---------RTAEAIAKELGID-EVRAELLPEDKA------EIVR----ELQ- 596 (713)
T ss_pred ChhHHHHHHHHHHCCCe-EEEEcCCCH---------HHHHHHHHHcChH-hheccCCcHHHH------HHHH----HHH-
Confidence 56788999999999999 889999884 3344444444441 122224455443 2222 333
Q ss_pred CCCeEEEEEeCCCCC
Q psy5985 90 GVQRGLILRNEKCND 104 (153)
Q Consensus 90 ~~~~~iIvvaEG~~~ 104 (153)
.+++.+..|..|+.|
T Consensus 597 ~~g~~VamVGDGIND 611 (713)
T COG2217 597 AEGRKVAMVGDGIND 611 (713)
T ss_pred hcCCEEEEEeCCchh
Confidence 345789999999976
No 152
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.31 E-value=1.4e+02 Score=24.46 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~ 92 (153)
+++.+.|+..+++.+. . -.+-+.-|...=.+++..+++..|+++++=|..-.+|... +.+..+.+++.+..+
T Consensus 119 ~~~~~~l~~~gL~~~~-----~--~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g 191 (279)
T PRK13650 119 ERVNEALELVGMQDFK-----E--REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ 191 (279)
T ss_pred HHHHHHHHHCCCHhHh-----h--CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 4455667777765331 0 1223555555567889999999999999988743333221 222223334433234
Q ss_pred eEEEEEe
Q psy5985 93 RGLILRN 99 (153)
Q Consensus 93 ~~iIvva 99 (153)
..+|+++
T Consensus 192 ~tilivt 198 (279)
T PRK13650 192 MTVISIT 198 (279)
T ss_pred CEEEEEe
Confidence 5566655
No 153
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=35.23 E-value=1.4e+02 Score=22.88 Aligned_cols=78 Identities=12% Similarity=0.070 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCe
Q psy5985 15 QIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQR 93 (153)
Q Consensus 15 ~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~ 93 (153)
++.+.++..+++... --.+-+.-|...=.+++..+++..++++++=|..-.+|.-. +.+..+.+++.+..+.
T Consensus 110 ~~~~~l~~~~l~~~~-------~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 182 (213)
T cd03301 110 RVREVAELLQIEHLL-------DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGT 182 (213)
T ss_pred HHHHHHHHcCCHHHH-------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 444556666664221 01223555666667889999999999999988744443221 2222233333332345
Q ss_pred EEEEEe
Q psy5985 94 GLILRN 99 (153)
Q Consensus 94 ~iIvva 99 (153)
.+|+++
T Consensus 183 tvi~~s 188 (213)
T cd03301 183 TTIYVT 188 (213)
T ss_pred EEEEEe
Confidence 666666
No 154
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.79 E-value=1.4e+02 Score=23.45 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCe
Q psy5985 15 QIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQR 93 (153)
Q Consensus 15 ~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~ 93 (153)
++.+.|+..++..+. . -.+-+.-|...=-++++.+++..|+++++=|..-.+|.- .+.+..+.+++.+..+.
T Consensus 116 ~~~~~l~~~~l~~~~-----~--~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 188 (235)
T cd03261 116 IVLEKLEAVGLRGAE-----D--LYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGL 188 (235)
T ss_pred HHHHHHHHcCCchhh-----c--CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 444556666664321 0 111233344444578888999999999998864333322 12222233344332345
Q ss_pred EEEEEe
Q psy5985 94 GLILRN 99 (153)
Q Consensus 94 ~iIvva 99 (153)
.+|+++
T Consensus 189 tvi~vs 194 (235)
T cd03261 189 TSIMVT 194 (235)
T ss_pred EEEEEe
Confidence 677766
No 155
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.42 E-value=1.4e+02 Score=23.38 Aligned_cols=80 Identities=10% Similarity=0.088 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCe
Q psy5985 15 QIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQR 93 (153)
Q Consensus 15 ~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~ 93 (153)
++.+.++..+++.+.- -.+-+.-|...=-+++..+++..++++++=|....+|.-. +.+..+.+.+.+..+.
T Consensus 110 ~~~~~l~~~~l~~~~~-------~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~ 182 (232)
T cd03300 110 RVAEALDLVQLEGYAN-------RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGI 182 (232)
T ss_pred HHHHHHHHcCCchhhc-------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 3445556666654320 1112334444445788899999999999988755554322 2222333344432256
Q ss_pred EEEEEeCC
Q psy5985 94 GLILRNEK 101 (153)
Q Consensus 94 ~iIvvaEG 101 (153)
.+|+++--
T Consensus 183 tiii~sh~ 190 (232)
T cd03300 183 TFVFVTHD 190 (232)
T ss_pred EEEEEeCC
Confidence 77777743
No 156
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.39 E-value=1.4e+02 Score=24.16 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=33.8
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-++++.+++..|+++++=|..-.+|... +.+..+.+.+.+.++..+|+++
T Consensus 160 ~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~t 218 (269)
T cd03294 160 ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFIT 218 (269)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 344444555888999999999999988754443322 2223333344332344566655
No 157
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=34.37 E-value=1.6e+02 Score=22.97 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCe
Q psy5985 15 QIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQR 93 (153)
Q Consensus 15 ~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~ 93 (153)
++.+.++..+++... + -.+-+.-|...=-+++..+++..|+++++=|..-.+|.- .+.+..+.+++.+ .+.
T Consensus 123 ~~~~~l~~~~l~~~~-----~--~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~ 194 (236)
T cd03219 123 RAEELLERVGLADLA-----D--RPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGI 194 (236)
T ss_pred HHHHHHHHcCccchh-----h--CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCC
Confidence 455666666665431 0 111233333334477888899999999997764444322 1222233334443 345
Q ss_pred EEEEEe
Q psy5985 94 GLILRN 99 (153)
Q Consensus 94 ~iIvva 99 (153)
.+|+++
T Consensus 195 tii~vs 200 (236)
T cd03219 195 TVLLVE 200 (236)
T ss_pred EEEEEe
Confidence 677776
No 158
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=34.29 E-value=1.5e+02 Score=27.84 Aligned_cols=80 Identities=8% Similarity=-0.029 Sum_probs=47.1
Q ss_pred HHHHHHHH----HHcCCcEEEEEcCCCCe-----------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCC
Q psy5985 13 LPQIAAKL----KELKIQALLIIGGFEVS-----------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKF 71 (153)
Q Consensus 13 ~~~~~~~L----~~~~Id~LvvIGGdgs~-----------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~ 71 (153)
+.++++.| +.+++ =+|||+.|| +-+++. .+... . ..| +++++.+.++
T Consensus 454 ~~~~~~~~~~a~~~~~~---p~i~G~~S~~n~~~~~~i~PT~~~~~vg~~~~-~~~~~----~---~~~-~i~lig~~~~ 521 (601)
T PRK14090 454 LSAMMTALKDACEFSGV---PVASGNASLYNTYQGKPIPPTLVVGMLGKVNP-QKVAK----P---KPS-KVFAVGWNDF 521 (601)
T ss_pred HHHHHHHHHHHHHHhCC---CeecceeccccCCCCccCCCCceEEEEEEecc-ccccC----C---CCC-eEEEECCCCC
Confidence 44444444 45554 589999999 444443 22111 1 234 4778887778
Q ss_pred CHHHHHHHHHHHHHHHHcCC-CeEEEEEeCCCCC
Q psy5985 72 SIKDLQQDLYHMASKMAEGV-QRGLILRNEKCND 104 (153)
Q Consensus 72 ~~~~l~~~i~~i~~~~~~~~-~~~iIvvaEG~~~ 104 (153)
+++...+..+.+.+-+++++ -.+.-=+|||...
T Consensus 522 ~~~~~~~~~~~~~~~i~~~~~~~~~hd~s~g~~~ 555 (601)
T PRK14090 522 ELEREKELWREIRKLSEEGAFILSSSQLLTRTHV 555 (601)
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEEEcccCchh
Confidence 99888777666666555542 1233446788753
No 159
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=34.13 E-value=1.4e+02 Score=23.63 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=32.7
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
.-|...=-+++..+++..++++++=|..-.+|.-. +.+..+.+++.+..+..+|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivs 204 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVT 204 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 34444445888999999999999977643333221 2222233333332345677766
No 160
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=33.79 E-value=39 Score=28.87 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+...++++.+++.+.|.+|-|||--.+
T Consensus 66 ~~~v~~~~~~~~~~~~d~IiaiGGGs~~ 93 (370)
T cd08551 66 LSNVDAAVAAYREEGCDGVIAVGGGSVL 93 (370)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 4568899999999999999999995443
No 161
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=33.71 E-value=1.2e+02 Score=23.75 Aligned_cols=31 Identities=10% Similarity=-0.129 Sum_probs=22.8
Q ss_pred CCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH
Q psy5985 46 GYCGYLATVAGLAGGADAAYIYEEKFSIKDL 76 (153)
Q Consensus 46 R~aG~LA~~aglA~gad~iliPE~~~~~~~l 76 (153)
...=.+++..+++..|+++++-|.+..+|..
T Consensus 108 G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 108 TMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 3344577888899999999999876555443
No 162
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=33.67 E-value=44 Score=28.62 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=23.6
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+..+++++.+++.+.|.+|-|||--++
T Consensus 69 ~~~v~~~~~~~~~~~~D~IIavGGGSvi 96 (357)
T cd08181 69 LETIMEAVEIAKKFNADFVIGIGGGSPL 96 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 4568889999999999999999986554
No 163
>KOG2178|consensus
Probab=33.63 E-value=25 Score=31.48 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=30.3
Q ss_pred cCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHHHHHHHHH
Q psy5985 23 LKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMA 84 (153)
Q Consensus 23 ~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~~~i~~i~ 84 (153)
.-+|.+|.+|||||..+-.-...|.--= .-+.+.|.--.|+ ||+.+.+.+.+..++
T Consensus 167 ~~~D~iItLGGDGTvL~aS~LFq~~VPP---V~sFslGslGFLt---pf~f~~f~~~l~~v~ 222 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYASSLFQRSVPP---VLSFSLGSLGFLT---PFPFANFQEQLARVL 222 (409)
T ss_pred cceeEEEEecCCccEEEehhhhcCCCCC---eEEeecCCccccc---cccHHHHHHHHHHHh
Confidence 4689999999999984433333333000 0011111111122 578888888776544
No 164
>PRK15452 putative protease; Provisional
Probab=33.62 E-value=1.3e+02 Score=27.05 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=22.9
Q ss_pred CHHH-HHHHhhcCCCEEEEcCC---------CCCHHHHHHHHH
Q psy5985 49 GYLA-TVAGLAGGADAAYIYEE---------KFSIKDLQQDLY 81 (153)
Q Consensus 49 G~LA-~~aglA~gad~iliPE~---------~~~~~~l~~~i~ 81 (153)
|.+. +.+|+..|||.||+.-. +|+.+++.+.++
T Consensus 11 g~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~ 53 (443)
T PRK15452 11 GTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGIN 53 (443)
T ss_pred CCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHH
Confidence 4343 67888899999999653 566677666554
No 165
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.49 E-value=1.4e+02 Score=24.48 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=32.8
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
.-|...=-+++..+++..|+++++=|..-.+|... ..+..+.+++.+..+..+|+++
T Consensus 146 LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vt 203 (286)
T PRK13646 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVS 203 (286)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 33444445788899999999999988744443222 2223334444332345555555
No 166
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=33.49 E-value=77 Score=26.94 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=16.1
Q ss_pred CcHHHHHHHHHHcCC---cEEEEEcCC
Q psy5985 11 KKLPQIAAKLKELKI---QALLIIGGF 34 (153)
Q Consensus 11 e~~~~~~~~L~~~~I---d~LvvIGGd 34 (153)
+..+++++.++++++ |.+|.|||=
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~IIaiGGG 95 (345)
T cd08195 69 ETLEKLYDALLEAGLDRKSLIIALGGG 95 (345)
T ss_pred HHHHHHHHHHHHcCCCCCCeEEEECCh
Confidence 456666677777776 677777764
No 167
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=33.39 E-value=1.7e+02 Score=22.52 Aligned_cols=78 Identities=9% Similarity=0.151 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~ 92 (153)
+++.+.|+..+++.+. . -.+-+.-|...=-++++.+++..|+++++=|..-.+|.. .+.+..+.+++.+ .+
T Consensus 117 ~~~~~~l~~~~l~~~~-----~--~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ 188 (216)
T TIGR00960 117 ERVSAALEKVGLEGKA-----H--ALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RG 188 (216)
T ss_pred HHHHHHHHHcCChhhh-----h--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CC
Confidence 3455566666654321 0 112234444445588899999999999997764333322 2223333334433 34
Q ss_pred eEEEEEe
Q psy5985 93 RGLILRN 99 (153)
Q Consensus 93 ~~iIvva 99 (153)
..+|+++
T Consensus 189 ~tii~vs 195 (216)
T TIGR00960 189 TTVLVAT 195 (216)
T ss_pred CEEEEEe
Confidence 5666666
No 168
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.28 E-value=1.6e+02 Score=23.36 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=32.7
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvva 99 (153)
.-|...=-+++..+++..++++++=|..-.+|.- .+.+..+.+++.+..+..+|+++
T Consensus 132 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~s 189 (241)
T PRK14250 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWIT 189 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3444444578888999999999997764333322 22222233344332345676666
No 169
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=33.18 E-value=1.3e+02 Score=20.15 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=25.0
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCC-CCeEE
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGF-EVSFF 39 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGd-gs~v~ 39 (153)
++....+++.+.+++++.|.|+-++ |.++-
T Consensus 58 ~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~g 88 (98)
T cd04618 58 ERSLFDAALLLLKNKIHRLPVIDPSTGTGLY 88 (98)
T ss_pred CCcHHHHHHHHHHCCCCEeeEEECCCCCceE
Confidence 5678899999999999999999876 65533
No 170
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=33.03 E-value=44 Score=29.02 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+..+++++..++.+.|.+|-|||--++
T Consensus 74 ~~~v~~~~~~~~~~~~D~IiaiGGGS~i 101 (383)
T PRK09860 74 TENVAAGLKLLKENNCDSVISLGGGSPH 101 (383)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHH
Confidence 4568899999999999999999996555
No 171
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=32.87 E-value=1.6e+02 Score=23.03 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCe--EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVS--FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEG 90 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~--v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~ 90 (153)
+++.+.|+..+++.. +.+ -.+-+.-|...=-+++..+++..++++++=|..-.+|... +.+..+.+++.+.
T Consensus 101 ~~~~~~l~~~~l~~~------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~ 174 (230)
T TIGR02770 101 ALILEALEAVGLPDP------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL 174 (230)
T ss_pred HHHHHHHHHcCCCch------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh
Confidence 345566666666521 011 1222344444445788899999999999877643333222 2222233333332
Q ss_pred CCeEEEEEe
Q psy5985 91 VQRGLILRN 99 (153)
Q Consensus 91 ~~~~iIvva 99 (153)
.+..+|+++
T Consensus 175 ~~~tiii~s 183 (230)
T TIGR02770 175 FGTGILLIT 183 (230)
T ss_pred cCCEEEEEe
Confidence 244566665
No 172
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=32.82 E-value=1.5e+02 Score=23.81 Aligned_cols=80 Identities=9% Similarity=0.030 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGV 91 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~ 91 (153)
+++.+.|+..+++.+. + -.+-+.-|...=-+++..+++..|+++++=|.. .|.+.. +.+..+.+++.+.+
T Consensus 131 ~~~~~~l~~~~l~~~~-----~--~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~-~~l~~~l~~~~~~~ 202 (262)
T PRK09984 131 QRALQALTRVGMVHFA-----H--QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA-RIVMDTLRDINQND 202 (262)
T ss_pred HHHHHHHHHcCCHHHH-----h--CCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHH-HHHHHHHHHHHHhc
Confidence 3455666666664321 0 112234444445677888999999999997764 444332 22333333444323
Q ss_pred CeEEEEEeCC
Q psy5985 92 QRGLILRNEK 101 (153)
Q Consensus 92 ~~~iIvvaEG 101 (153)
+..+|+++--
T Consensus 203 g~tvii~tH~ 212 (262)
T PRK09984 203 GITVVVTLHQ 212 (262)
T ss_pred CCEEEEEeCC
Confidence 4567777643
No 173
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=32.75 E-value=1.5e+02 Score=23.90 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=32.5
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-++++.+++..|+++++=|..-.+|.-. +.+..+.+++.+..+..+|+++
T Consensus 143 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivs 201 (269)
T PRK11831 143 ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVS 201 (269)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 334444445788889999999999977643333222 2222233344332244566665
No 174
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=32.72 E-value=1.8e+02 Score=22.66 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=31.5
Q ss_pred CCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 45 GGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 45 GR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
|...=-+++..+++..++++++=|..-.+|... +.+..+.+++.+..+..+|+++
T Consensus 134 ~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 189 (230)
T TIGR03410 134 GGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVE 189 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 333445677888889999999977644343222 2222333344332355677776
No 175
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=32.68 E-value=73 Score=28.85 Aligned_cols=46 Identities=9% Similarity=0.172 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHHcCC---cEEEEEcCCCCeEEEEEecCCCcCHHHH--HHHhhcCCCEEEEcC
Q psy5985 11 KKLPQIAAKLKELKI---QALLIIGGFEVSFFALKTMGGYCGYLAT--VAGLAGGADAAYIYE 68 (153)
Q Consensus 11 e~~~~~~~~L~~~~I---d~LvvIGGdgs~v~iVEvMGR~aG~LA~--~aglA~gad~iliPE 68 (153)
+...++++.|.++++ |.++.+||-- .|.+|- ++..-.|.+++.+|=
T Consensus 221 ~~v~~~~~~l~~~~~~R~d~viaiGGG~------------v~D~agf~A~~y~RGi~~i~vPT 271 (488)
T PRK13951 221 EHVSRAYYELVRMDFPRGKTIAGVGGGA------------LTDFTGFVASTFKRGVGLSFYPT 271 (488)
T ss_pred HHHHHHHHHHHHcCCCCCCeEEEECChH------------HHHHHHHHHHHHhcCCCeEecCc
Confidence 468889999999999 9999999743 444442 233445788888775
No 176
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=32.63 E-value=1.5e+02 Score=23.25 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~ 92 (153)
+++.+.++..+++.+. + -.+-+.-|...=-++++.+++..|+++++=|..-.+|.- .+.+..+.+++.+..+
T Consensus 124 ~~~~~~l~~~~l~~~~-----~--~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 196 (243)
T TIGR02315 124 ERALSALERVGLADKA-----Y--QRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDG 196 (243)
T ss_pred HHHHHHHHHcCcHhhh-----c--CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 4455566666654321 0 112234444444578899999999999997764333322 1222223334433224
Q ss_pred eEEEEEe
Q psy5985 93 RGLILRN 99 (153)
Q Consensus 93 ~~iIvva 99 (153)
..+|+++
T Consensus 197 ~tiii~t 203 (243)
T TIGR02315 197 ITVIINL 203 (243)
T ss_pred CEEEEEe
Confidence 4666665
No 177
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.51 E-value=1.5e+02 Score=24.40 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCc-EEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCC
Q psy5985 14 PQIAAKLKELKIQ-ALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGV 91 (153)
Q Consensus 14 ~~~~~~L~~~~Id-~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~ 91 (153)
+++.+.|+..+++ .+. +. .+-+.-|...=-++++.+++..|+++++=|..-.+|... +.+..+.+.+.+..
T Consensus 123 ~~~~~~l~~~gL~~~~~-----~~--~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~ 195 (290)
T PRK13634 123 QKAREMIELVGLPEELL-----AR--SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEK 195 (290)
T ss_pred HHHHHHHHHCCCChhhh-----hC--CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc
Confidence 3455667777764 221 00 111223333334788999999999999988744333222 22222333443323
Q ss_pred CeEEEEEe
Q psy5985 92 QRGLILRN 99 (153)
Q Consensus 92 ~~~iIvva 99 (153)
+..||+++
T Consensus 196 g~tviiit 203 (290)
T PRK13634 196 GLTTVLVT 203 (290)
T ss_pred CCEEEEEe
Confidence 44555554
No 178
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=32.26 E-value=58 Score=30.43 Aligned_cols=50 Identities=22% Similarity=0.436 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe---------------EEEEEecCCCcC-HHHH--HHHhhcCC
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS---------------FFALKTMGGYCG-YLAT--VAGLAGGA 61 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~---------------v~iVEvMGR~aG-~LA~--~aglA~ga 61 (153)
..++.++..|. ..+|.++||||..|- .|.||.-.-=.. |+.- ..|+.+||
T Consensus 194 ~~Rq~a~~~la-~~~d~~~vvGg~~SsNt~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitaga 261 (647)
T PRK00087 194 EVRQEAAEKLA-KKVDVMIVVGGKNSSNTTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGA 261 (647)
T ss_pred hhHHHHHHHHH-hhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEecc
Confidence 46888888887 479999999999996 777776554332 4431 23444555
No 179
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=32.12 E-value=1.7e+02 Score=23.41 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=34.9
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEeCC
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRNEK 101 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvvaEG 101 (153)
+.-|...=-+++..+++..|+++++=|..-.+|.-. +.+..+.+++.+.++..+|+++--
T Consensus 151 ~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~ 211 (258)
T PRK11701 151 TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 344445556888889999999999988744443222 222223334433335567776643
No 180
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=32.09 E-value=45 Score=24.02 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=12.4
Q ss_pred CcHHHHHHHHHHcCCcEEEEEc
Q psy5985 11 KKLPQIAAKLKELKIQALLIIG 32 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIG 32 (153)
.+.+.+++..++++|| |++||
T Consensus 49 ~d~~~l~~~a~~~~id-lvvvG 69 (100)
T PF02844_consen 49 TDPEELADFAKENKID-LVVVG 69 (100)
T ss_dssp T-HHHHHHHHHHTTES-EEEES
T ss_pred CCHHHHHHHHHHcCCC-EEEEC
Confidence 4566666666777776 44444
No 181
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=31.94 E-value=44 Score=28.34 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=22.8
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCC
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEV 36 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs 36 (153)
.+..+++++.+++.+.|.+|-|||--.
T Consensus 63 ~~~v~~~~~~~~~~~~d~IIaiGGGs~ 89 (337)
T cd08177 63 VEVTEAAVAAAREAGADGIVAIGGGST 89 (337)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcHH
Confidence 456889999999999999999998443
No 182
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=31.78 E-value=1.9e+02 Score=22.17 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=32.2
Q ss_pred CCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 45 GGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 45 GR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
|...=-+++..+++..++++++=|..-.+|... +.+..+.+++.+ ++..+|+++
T Consensus 139 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~t 193 (218)
T cd03266 139 TGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFST 193 (218)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 344445788889999999999977654443322 222233334433 345676666
No 183
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=31.66 E-value=43 Score=28.77 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+...++++.+++.++|.+|-|||--.+
T Consensus 69 ~~~v~~~~~~~~~~~~D~IIaiGGGs~i 96 (376)
T cd08193 69 EAVVEAAVEAARAAGADGVIGFGGGSSM 96 (376)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 4568899999999999999999985443
No 184
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.65 E-value=1.7e+02 Score=23.49 Aligned_cols=58 Identities=10% Similarity=0.065 Sum_probs=34.1
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRNEK 101 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG 101 (153)
.-|...=-+++..+++..|+++++=|.. +|.+.... +..+.+.+....+..+|+++--
T Consensus 151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~-l~~~l~~l~~~~~~tiiivsH~ 210 (261)
T PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMK-VESLIQSLRLRSELTMVIVSHN 210 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH-HHHHHHHHHHhCCCEEEEEECC
Confidence 3444445678888899999999997764 44433322 2222333332235677777743
No 185
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=31.48 E-value=1.6e+02 Score=23.64 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=31.4
Q ss_pred CCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 45 GGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 45 GR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
|...=-+++..+++..|+++++=|..-.+|.-. +.+..+.+++.+..+..+|+++
T Consensus 131 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivs 186 (255)
T PRK11248 131 GGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLIT 186 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 333445788899999999999988643333221 2222233344222345666666
No 186
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=31.32 E-value=1.9e+02 Score=22.59 Aligned_cols=52 Identities=8% Similarity=-0.082 Sum_probs=30.7
Q ss_pred CcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 47 YCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 47 ~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
..=-+++..+++..|+++++=|..-.+|... +.+..+.+++.+ ++..+|+++
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vs 201 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIIT 201 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEE
Confidence 3334888999999999999977643333221 222223334433 345677776
No 187
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=31.17 E-value=45 Score=29.01 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=23.9
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+..+++++.++++++|.+|-|||--++
T Consensus 64 ~~~v~~~~~~~~~~~~D~IIaiGGGS~i 91 (398)
T cd08178 64 LETVRKGLELMNSFKPDTIIALGGGSPM 91 (398)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 3568899999999999999999996554
No 188
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=31.14 E-value=1.4e+02 Score=19.95 Aligned_cols=31 Identities=6% Similarity=0.067 Sum_probs=25.3
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCeEEE
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVSFFA 40 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~v~i 40 (153)
.+....+++.+.+++++.|.|+-++|.++.+
T Consensus 72 ~~~l~~al~~m~~~~~~~lpVvd~~~~~~Gi 102 (111)
T cd04603 72 DSKVTDLLRIFRETEPPVVAVVDKEGKLVGT 102 (111)
T ss_pred CCcHHHHHHHHHHcCCCeEEEEcCCCeEEEE
Confidence 4557899999999999999999887765433
No 189
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.98 E-value=1.7e+02 Score=23.54 Aligned_cols=78 Identities=15% Similarity=0.110 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCe
Q psy5985 15 QIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQR 93 (153)
Q Consensus 15 ~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~ 93 (153)
++.+.++..++..+. | -.+-+.-|...=-+++..+++..|+++++=|..-.+|.-. +.+..+.+++.+.++.
T Consensus 122 ~~~~~l~~~~l~~~~----~---~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ 194 (269)
T PRK13648 122 RVSEALKQVDMLERA----D---YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNI 194 (269)
T ss_pred HHHHHHHHcCCchhh----h---CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 445666666664321 0 1122444555556888999999999999988744333222 2222233344332345
Q ss_pred EEEEEe
Q psy5985 94 GLILRN 99 (153)
Q Consensus 94 ~iIvva 99 (153)
.+|+++
T Consensus 195 tiiivt 200 (269)
T PRK13648 195 TIISIT 200 (269)
T ss_pred EEEEEe
Confidence 566655
No 190
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=30.88 E-value=2.1e+02 Score=21.36 Aligned_cols=49 Identities=12% Similarity=0.067 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 50 YLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 50 ~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
-+++..+++..++++++=|..-.+|.-. +.+..+.+++.+ ++..+|+++
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~s 153 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIA 153 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 3566777778888888876543333221 222223333332 344566665
No 191
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=30.84 E-value=2e+02 Score=22.07 Aligned_cols=56 Identities=9% Similarity=0.112 Sum_probs=33.5
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=.+++..+++..|+++++=|.. +|.+... .+..+.+.+.+ ++..+|+++
T Consensus 137 ~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~-~l~~~l~~~~~-~~~tii~~t 194 (214)
T TIGR02673 137 QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSE-RILDLLKRLNK-RGTTVIVAT 194 (214)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHH-HHHHHHHHHHH-cCCEEEEEe
Confidence 44455566788999999999999997754 4433222 22223333432 345666666
No 192
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.44 E-value=1.8e+02 Score=23.58 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=33.4
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
+.-|...=-+++..+++..|+++++=|..-.+|.- .+.+..+.+++.+..+..+|+++-
T Consensus 142 ~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH 201 (271)
T PRK13632 142 NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITH 201 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEe
Confidence 34444555688899999999999997763333322 222323333443322356666653
No 193
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=30.42 E-value=48 Score=27.99 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=23.4
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+..+++++.+++.+.|.+|-|||--.+
T Consensus 64 ~~~v~~~~~~~~~~~~d~IiaiGGGs~~ 91 (332)
T cd08180 64 IEVVAKGIKKFLDFKPDIVIALGGGSAI 91 (332)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchHH
Confidence 3567799999999999999999985544
No 194
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=30.36 E-value=2.1e+02 Score=21.53 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 50 YLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 50 ~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
-+++..+++..++++++=|..-.+|.-. +.+..+.+++.+ ++..+|+++
T Consensus 112 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~s 161 (182)
T cd03215 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLIS 161 (182)
T ss_pred HHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 3567788888999999977643333222 222223334433 345666665
No 195
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=30.33 E-value=1.8e+02 Score=23.48 Aligned_cols=80 Identities=11% Similarity=0.120 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCc-EEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCC
Q psy5985 14 PQIAAKLKELKIQ-ALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGV 91 (153)
Q Consensus 14 ~~~~~~L~~~~Id-~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~ 91 (153)
+++.+.|+..+++ .+. + -.+-+.-|...=-++++.+++..++++++=|..-.+|... +.+..+.+++.+..
T Consensus 128 ~~~~~~l~~~gl~~~~~-----~--~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~ 200 (265)
T TIGR02769 128 ARIAELLDMVGLRSEDA-----D--KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAF 200 (265)
T ss_pred HHHHHHHHHcCCChhhh-----h--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 4555667777764 221 0 1223444555556888889999999999966543333221 22222333444323
Q ss_pred CeEEEEEeC
Q psy5985 92 QRGLILRNE 100 (153)
Q Consensus 92 ~~~iIvvaE 100 (153)
+..+|+++-
T Consensus 201 g~tiiivsH 209 (265)
T TIGR02769 201 GTAYLFITH 209 (265)
T ss_pred CcEEEEEeC
Confidence 456666663
No 196
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=30.32 E-value=1.8e+02 Score=22.50 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=30.4
Q ss_pred cCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 48 CGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 48 aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
.=-+++..+++..++++++=|..-.+|.-. +.+..+.+++.+.++..+|+++
T Consensus 147 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 199 (220)
T TIGR02982 147 KQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVT 199 (220)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 334677778888999999988744443222 2333333344333456677766
No 197
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=30.14 E-value=2.1e+02 Score=21.84 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=31.2
Q ss_pred cCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 44 MGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 44 MGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvva 99 (153)
-|...=-+++..+++..|+++++=|..-.+|.- .+.+.++.+++.+ .+..+|+++
T Consensus 129 S~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~s 184 (200)
T PRK13540 129 SSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTS 184 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEe
Confidence 333344567888888999999997764444322 2223333334432 345666665
No 198
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=30.09 E-value=1.7e+02 Score=23.57 Aligned_cols=55 Identities=15% Similarity=0.021 Sum_probs=31.3
Q ss_pred CCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 45 GGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 45 GR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
|...=-+++..+++..|+++++=|..-.+|... +.+..+.+++.+..+..+|+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivs 207 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVT 207 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEe
Confidence 333444778888999999999977644333322 2333333344332345666665
No 199
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=30.01 E-value=2.1e+02 Score=22.02 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=33.3
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
.-|...=-+++..+++..|+++++=|..-.+|.-. +.+..+.+++.+ ++..+|+++-
T Consensus 133 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH 190 (222)
T cd03224 133 LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQ 190 (222)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeC
Confidence 33444445778888889999999977644443322 222233334443 3556777763
No 200
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=29.99 E-value=49 Score=28.48 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+..+++++.+++.+.|.+|-|||--++
T Consensus 69 ~~~v~~~~~~~~~~~~d~IIaiGGGS~~ 96 (374)
T cd08189 69 IENVEAGLALYRENGCDAILAVGGGSVI 96 (374)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 3568899999999999999999985444
No 201
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=29.88 E-value=2.3e+02 Score=21.05 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=28.8
Q ss_pred CHHHHHHHhhcCCCEEEEcCC--CCCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 49 GYLATVAGLAGGADAAYIYEE--KFSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 49 G~LA~~aglA~gad~iliPE~--~~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
=-+++..+++..|+++++=|. ..|.+... .+..+.+++.+ ++..+|+++
T Consensus 89 qrl~laral~~~p~illlDEP~~~LD~~~~~-~l~~~l~~~~~-~~~tiii~s 139 (163)
T cd03216 89 QMVEIARALARNARLLILDEPTAALTPAEVE-RLFKVIRRLRA-QGVAVIFIS 139 (163)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHH-HHHHHHHHHHH-CCCEEEEEe
Confidence 346778888899999999665 44543322 22223334432 345666665
No 202
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=29.87 E-value=48 Score=28.37 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=23.4
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+..+++++.++++++|.+|-|||--++
T Consensus 63 ~~~v~~~~~~~~~~~~D~IIavGGGs~~ 90 (367)
T cd08182 63 LEDLAAGIRLLREFGPDAVLAVGGGSVL 90 (367)
T ss_pred HHHHHHHHHHHHhcCcCEEEEeCCcHHH
Confidence 3568899999999999999999985443
No 203
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.79 E-value=1.9e+02 Score=23.49 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCe
Q psy5985 15 QIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQR 93 (153)
Q Consensus 15 ~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~ 93 (153)
++.+.|+..++..+. . -.+-+.-|...=-+++..+++..|+++++=|..-.+|... +.+..+.+++.+ .+.
T Consensus 118 ~~~~~l~~~~L~~~~-----~--~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~ 189 (274)
T PRK13647 118 RVEEALKAVRMWDFR-----D--KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGK 189 (274)
T ss_pred HHHHHHHHCCCHHHh-----c--CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCC
Confidence 444556665654321 1 1223555666667889999999999999988744443221 222333434443 244
Q ss_pred EEEEEe
Q psy5985 94 GLILRN 99 (153)
Q Consensus 94 ~iIvva 99 (153)
.+|+++
T Consensus 190 tili~t 195 (274)
T PRK13647 190 TVIVAT 195 (274)
T ss_pred EEEEEe
Confidence 555554
No 204
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.58 E-value=2.2e+02 Score=21.72 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=32.8
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
.-|...=-+++..+++..|+++++=|.. +|.+.... +..+.+++.+ ++..+|+++-
T Consensus 109 LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~-l~~~l~~~~~-~~~tiiivtH 166 (192)
T cd03232 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYN-IVRFLKKLAD-SGQAILCTIH 166 (192)
T ss_pred CCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHH-HHHHHHHHHH-cCCEEEEEEc
Confidence 3344444577888899999999997764 44433222 2223334443 3556777763
No 205
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=29.54 E-value=2.2e+02 Score=21.87 Aligned_cols=56 Identities=16% Similarity=0.025 Sum_probs=33.9
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-+++..+++..|+++++=|.. +|.+... .+..+.+++.+ ++..+|+++
T Consensus 129 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~-~l~~~l~~~~~-~~~tiii~s 186 (204)
T PRK13538 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVA-RLEALLAQHAE-QGGMVILTT 186 (204)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH-HHHHHHHHHHH-CCCEEEEEe
Confidence 44455556788889999999999997763 4443322 22233334432 345677766
No 206
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=29.42 E-value=50 Score=28.06 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=23.8
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+..+++++.+++.+.|.+|-|||--.+
T Consensus 62 ~~~v~~~~~~~~~~~~D~iIavGGGs~~ 89 (347)
T cd08172 62 EENIERLAAQAKENGADVIIGIGGGKVL 89 (347)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcHHH
Confidence 4568899999999999999999996544
No 207
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=29.39 E-value=59 Score=24.37 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=16.6
Q ss_pred CcHHHHHHHHHHcCCcEEEEE
Q psy5985 11 KKLPQIAAKLKELKIQALLII 31 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvI 31 (153)
++++..++.|++.+++.|+||
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi 56 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVI 56 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHcCCceEEEe
Confidence 468889999999999988764
No 208
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=29.32 E-value=51 Score=28.46 Aligned_cols=28 Identities=21% Similarity=0.107 Sum_probs=23.4
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+..+++++.+++++.|.+|-|||--.+
T Consensus 72 ~~~v~~~~~~~~~~~~D~IiaiGGGSvi 99 (379)
T TIGR02638 72 ITVVKAGVAAFKASGADYLIAIGGGSPI 99 (379)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 4568889999999999999999995443
No 209
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=29.21 E-value=1.9e+02 Score=23.51 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=31.2
Q ss_pred cCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 44 MGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 44 MGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
-|...=-+++..+++..++++++=|..-.+|... +.+..+.+++.+..+..+|+++
T Consensus 135 SgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivs 191 (257)
T PRK11247 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT 191 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 3333444788888999999999977643333222 2222233343322344566665
No 210
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.21 E-value=2.1e+02 Score=21.93 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~ 92 (153)
+++.+.++..+++.+. . -.+-+.-|...=.+++..+++..++++++=|..-.+|.- .+.+..+.+++.+ +
T Consensus 109 ~~~~~~l~~~~l~~~~-----~--~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~ 179 (211)
T cd03264 109 ARVDEVLELVNLGDRA-----K--KKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D 179 (211)
T ss_pred HHHHHHHHHCCCHHHH-----h--CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C
Confidence 3445566666664321 1 122344455555788899999999999997764433322 1222333444543 3
Q ss_pred eEEEEEe
Q psy5985 93 RGLILRN 99 (153)
Q Consensus 93 ~~iIvva 99 (153)
..+|+++
T Consensus 180 ~tii~vs 186 (211)
T cd03264 180 RIVILST 186 (211)
T ss_pred CEEEEEc
Confidence 5666666
No 211
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=29.16 E-value=2e+02 Score=22.64 Aligned_cols=55 Identities=16% Similarity=0.133 Sum_probs=31.7
Q ss_pred CCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 45 GGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 45 GR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
|...=-+++..+++..|+++++=|..-.+|.-. +.+..+.+.+.+..+..+|+++
T Consensus 133 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~s 188 (237)
T TIGR00968 133 GGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVT 188 (237)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 334446788888999999999988754443222 1122233333332245676666
No 212
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=29.15 E-value=1.9e+02 Score=23.44 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=33.6
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
.-|...=.+++..+++..++++++=|..-.+|... +.+..+.+.+.+..+..+|+++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivs 209 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFIT 209 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEE
Confidence 34445556888999999999999988754444321 2222233344332345566665
No 213
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=29.07 E-value=2e+02 Score=23.19 Aligned_cols=57 Identities=11% Similarity=0.148 Sum_probs=31.5
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
.-|...=-+++..+++..|+++++=|..-.+|.-. +.+..+.+++.+..+..+|+++
T Consensus 121 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivs 178 (251)
T PRK09544 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVS 178 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 33444445778888999999999988644333221 2222233333332244566655
No 214
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=29.06 E-value=52 Score=28.32 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=24.0
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+..+++++.+++.++|.+|-|||--++
T Consensus 67 ~~~v~~~~~~~~~~~~D~IIavGGGSvi 94 (375)
T cd08179 67 VETVLKGAEAMREFEPDWIIALGGGSPI 94 (375)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 4568899999999999999999986554
No 215
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=29.05 E-value=2.2e+02 Score=21.70 Aligned_cols=77 Identities=12% Similarity=0.145 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCe
Q psy5985 15 QIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQR 93 (153)
Q Consensus 15 ~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~ 93 (153)
++.+.++..+++.+. . -.+-+.-|...=.+++..+++..|+++++=|..-.+|.- .+.+..+.+++.+ .+.
T Consensus 115 ~~~~~l~~~~l~~~~-----~--~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~ 186 (213)
T cd03262 115 RALELLEKVGLADKA-----D--AYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGM 186 (213)
T ss_pred HHHHHHHHcCCHhHh-----h--hCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCC
Confidence 344556666654221 0 123455566666788999999999999997764444322 2233333434443 344
Q ss_pred EEEEEe
Q psy5985 94 GLILRN 99 (153)
Q Consensus 94 ~iIvva 99 (153)
.+|+++
T Consensus 187 tvi~~s 192 (213)
T cd03262 187 TMVVVT 192 (213)
T ss_pred EEEEEe
Confidence 566655
No 216
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.03 E-value=1.9e+02 Score=23.48 Aligned_cols=58 Identities=14% Similarity=0.136 Sum_probs=33.5
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-+++..+++..|+++++=|..-.+|... +.+..+.+++.+.++..+|+++
T Consensus 137 ~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~t 195 (277)
T PRK13652 137 HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFST 195 (277)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 444555556788899999999999988754443222 2222333344332244555554
No 217
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=28.88 E-value=2.2e+02 Score=21.71 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=32.1
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-+++.-+++..++++++=|..-.+|... +.+..+.+++.+ ++..+|+++
T Consensus 134 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tvi~~s 191 (211)
T cd03225 134 TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-EGKTIIIVT 191 (211)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEe
Confidence 334444445778888999999999977643333221 222223334433 345666665
No 218
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=28.76 E-value=1.6e+02 Score=19.90 Aligned_cols=32 Identities=6% Similarity=0.050 Sum_probs=26.0
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCeEEEE
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVSFFAL 41 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~v~iV 41 (153)
.+.+..+++.+.++++..|.|+..++.++.+|
T Consensus 84 ~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGii 115 (123)
T cd04627 84 DQPLIDALHLMHNEGISSVAVVDNQGNLIGNI 115 (123)
T ss_pred CCCHHHHHHHHHHcCCceEEEECCCCcEEEEE
Confidence 45678899999999999999998887654443
No 219
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=28.75 E-value=2e+02 Score=22.91 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=33.2
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
.-|...=-+++..+++..++++++=|..-.+|.-. +.+..+.+++.+..+..+|+++
T Consensus 141 LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~s 198 (254)
T PRK10418 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVT 198 (254)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 33444445788899999999999987754444322 2232333344332345666666
No 220
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=28.69 E-value=57 Score=28.63 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=23.4
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+...++++.+++.++|.+|-|||--.+
T Consensus 66 ~~~v~~~~~~~~~~~~D~IIaiGGGSvi 93 (414)
T cd08190 66 DESFKDAIAFAKKGQFDAFVAVGGGSVI 93 (414)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 3568889999999999999999996554
No 221
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=28.68 E-value=65 Score=26.98 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
+...++++.-++++..-++.+||.++=
T Consensus 103 el~~~~Ld~a~e~g~~~IyTLGGy~vG 129 (258)
T COG2047 103 ELTGKILDIAKEFGARMIYTLGGYGVG 129 (258)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCcccC
Confidence 345677788889999999999999874
No 222
>PLN02562 UDP-glycosyltransferase
Probab=28.64 E-value=1.8e+02 Score=25.90 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=48.2
Q ss_pred eecCC-CCCCCcHHHHHHHHHHcCCcEEEEEcC--CCCe-----------EEEEE--------------ecCCCcCHHHH
Q psy5985 2 LGTKR-TLPEKKLPQIAAKLKELKIQALLIIGG--FEVS-----------FFALK--------------TMGGYCGYLAT 53 (153)
Q Consensus 2 LgTsR-~~~~e~~~~~~~~L~~~~Id~LvvIGG--dgs~-----------v~iVE--------------vMGR~aG~LA~ 53 (153)
+||.- ..+.+.++.++..|++.+...|.++.- ++.+ ++++. ..=-||||-.+
T Consensus 280 fGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~ 359 (448)
T PLN02562 280 FGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNST 359 (448)
T ss_pred ecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCchhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhH
Confidence 45632 333567999999999999999988731 1111 23322 23369999999
Q ss_pred HHHhhcCCCEEEEcCC
Q psy5985 54 VAGLAGGADAAYIYEE 69 (153)
Q Consensus 54 ~aglA~gad~iliPE~ 69 (153)
.-|+..|.-++.+|=.
T Consensus 360 ~Eal~~GvP~l~~P~~ 375 (448)
T PLN02562 360 MEAIQCQKRLLCYPVA 375 (448)
T ss_pred HHHHHcCCCEEeCCcc
Confidence 9999999999998854
No 223
>PRK10908 cell division protein FtsE; Provisional
Probab=28.60 E-value=2.3e+02 Score=21.93 Aligned_cols=53 Identities=8% Similarity=0.092 Sum_probs=30.8
Q ss_pred CCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 45 GGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 45 GR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
|...=.+++..+++..|+++++=|.. .|.+.. +.+..+.+++.+ ++..+|+++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~-~~l~~~l~~~~~-~~~tiii~s 194 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALS-EGILRLFEEFNR-VGVTVLMAT 194 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH-HHHHHHHHHHHH-CCCEEEEEe
Confidence 33334578888899999999997764 444322 222223334433 345666666
No 224
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=28.59 E-value=2.6e+02 Score=24.54 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcC-CCCe---------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcC
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGG-FEVS---------------------FFALKTMGGYCGYLATVAGLAGGADAAYIYE 68 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGG-dgs~---------------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE 68 (153)
+-++.+.+.+.+++.+.++-.|+ +.|+ +-+|- -|.|+-+++.+|..|.-.+++|-
T Consensus 252 ~l~~~~~~a~~~l~~~vi~~~~~~~~~~~~~p~n~~v~~~~p~~~~l~~ad~vI---~hGG~gtt~eaL~~gvP~vv~P~ 328 (406)
T COG1819 252 ELLAIVLEALADLDVRVIVSLGGARDTLVNVPDNVIVADYVPQLELLPRADAVI---HHGGAGTTSEALYAGVPLVVIPD 328 (406)
T ss_pred HHHHHHHHHHhcCCcEEEEeccccccccccCCCceEEecCCCHHHHhhhcCEEE---ecCCcchHHHHHHcCCCEEEecC
Confidence 45788999999999999999999 4444 22222 36788889999999999999997
Q ss_pred C
Q psy5985 69 E 69 (153)
Q Consensus 69 ~ 69 (153)
.
T Consensus 329 ~ 329 (406)
T COG1819 329 G 329 (406)
T ss_pred C
Confidence 6
No 225
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.33 E-value=1.9e+02 Score=23.70 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 50 YLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 50 ~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
-+++..+++..|+++++=|..-.+|... +.+..+.+++.+..+..+|+++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiis 208 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVT 208 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4678888999999999988644333222 2222233334332244555555
No 226
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=28.22 E-value=2.6e+02 Score=20.96 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=34.7
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCC----CCHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCC
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEK----FSIKDLQQDLYHMASKMAEGVQRGLILRNEKCND 104 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~----~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG~~~ 104 (153)
++|.+.--. ....++.|+|.++.-+.+ ++.+...+.+..+. + ..+..+|+.+.-...
T Consensus 35 ~~G~~~~~~-~~~~~~~Gad~v~~~~~~~~~~~~~~~~a~al~~~i---~-~~~p~~Vl~~~t~~g 95 (168)
T cd01715 35 VIGSGAEAV-AAALKAYGADKVLVAEDPALAHYLAEPYAPALVALA---K-KEKPSHILAGATSFG 95 (168)
T ss_pred EECCChHHH-HHHHHhcCCCEEEEecChhhcccChHHHHHHHHHHH---H-hcCCCEEEECCCccc
Confidence 356554333 344456799998887653 56666666654433 2 245678888877643
No 227
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=28.19 E-value=66 Score=27.81 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=19.2
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCC
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFE 35 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdg 35 (153)
.+..+++++.+++++.|.+|.|||--
T Consensus 70 ~~~v~~~~~~~~~~~~D~IIaiGGGS 95 (383)
T cd08186 70 VDQVDEAAKLGREFGAQAVIAIGGGS 95 (383)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 34577788888888888888888743
No 228
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=28.17 E-value=68 Score=25.59 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=23.5
Q ss_pred CeecCCCCCCCcHHHHHHHH-HHcCCcEEEEEcCC
Q psy5985 1 MLGTKRTLPEKKLPQIAAKL-KELKIQALLIIGGF 34 (153)
Q Consensus 1 iLgTsR~~~~e~~~~~~~~L-~~~~Id~LvvIGGd 34 (153)
|.||+.+.. -+.++++.|+ ..-||..|++.|-+
T Consensus 44 I~G~~~TEN-lGIEKvI~NvisNpnIRflilcG~E 77 (176)
T PF04208_consen 44 IAGPCKTEN-LGIEKVIANVISNPNIRFLILCGSE 77 (176)
T ss_pred eeecccccc-cCHHHHHHHHhcCCCceEEEEecCc
Confidence 356666653 4677888776 77899999888764
No 229
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=28.13 E-value=2.3e+02 Score=21.80 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=30.7
Q ss_pred cCCCcCHHHHHHHhhcC--CCEEEEcCC--CCCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 44 MGGYCGYLATVAGLAGG--ADAAYIYEE--KFSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 44 MGR~aG~LA~~aglA~g--ad~iliPE~--~~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
.|...=-+++..+++.. |+++++=|. .+|.+.... +..+.+++.+ ++..+|+++
T Consensus 89 SgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~-l~~~l~~~~~-~g~tvIivS 146 (176)
T cd03238 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQ-LLEVIKGLID-LGNTVILIE 146 (176)
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHh-CCCEEEEEe
Confidence 33334456788888889 999999554 455443322 2223333332 345666665
No 230
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.11 E-value=2.1e+02 Score=23.24 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 50 YLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 50 ~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
-+++..+++..|+++++=|..-.+|.-. ..+..+.+++.+ ++..+|+++
T Consensus 144 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~t 193 (274)
T PRK13644 144 CVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYIT 193 (274)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 4678888999999999988754443322 222223334433 344555554
No 231
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=28.07 E-value=2.1e+02 Score=23.03 Aligned_cols=56 Identities=18% Similarity=0.054 Sum_probs=31.2
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCC--CCCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEE--KFSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~--~~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
.-|...=-+++..+++..|+++++=|. .+|.+... .+..+.+++.+.++..+|+++
T Consensus 144 LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~-~l~~~L~~l~~~~~~tiii~t 201 (265)
T PRK10253 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQI-DLLELLSELNREKGYTLAAVL 201 (265)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH-HHHHHHHHHHHhcCCEEEEEe
Confidence 334444457788899999999999665 44443322 222233334332244555555
No 232
>PLN03007 UDP-glucosyltransferase family protein
Probab=28.02 E-value=1.7e+02 Score=26.26 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=49.0
Q ss_pred eecCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCC-------Ce------------EEE--------------EEecCCCc
Q psy5985 2 LGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFE-------VS------------FFA--------------LKTMGGYC 48 (153)
Q Consensus 2 LgTsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdg-------s~------------v~i--------------VEvMGR~a 48 (153)
+||......+.+.++++.|+..+..-|.+++.+. .+ +.+ |..+=-||
T Consensus 292 fGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~ 371 (482)
T PLN03007 292 FGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHC 371 (482)
T ss_pred ecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecC
Confidence 4554333345688888999999999999998531 11 122 22355799
Q ss_pred CHHHHHHHhhcCCCEEEEcC
Q psy5985 49 GYLATVAGLAGGADAAYIYE 68 (153)
Q Consensus 49 G~LA~~aglA~gad~iliPE 68 (153)
||-.+.-|+..|.-++.+|=
T Consensus 372 G~nS~~Eal~~GVP~v~~P~ 391 (482)
T PLN03007 372 GWNSLLEGVAAGLPMVTWPV 391 (482)
T ss_pred cchHHHHHHHcCCCeeeccc
Confidence 99999999999999999984
No 233
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=28.01 E-value=1.2e+02 Score=26.02 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=19.6
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCC
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEV 36 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs 36 (153)
+..+++++.+++++.|.+|-|||--.
T Consensus 71 ~~v~~~~~~~~~~~~d~IIavGGGsv 96 (366)
T PRK09423 71 NEIDRLVAIAEENGCDVVIGIGGGKT 96 (366)
T ss_pred HHHHHHHHHHHhcCCCEEEEecChHH
Confidence 45677888888888888888887443
No 234
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=27.92 E-value=2e+02 Score=24.29 Aligned_cols=81 Identities=11% Similarity=0.203 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCC-eEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEV-SFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGV 91 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs-~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~ 91 (153)
+++.+.|+..+++..- .. --+.-|.-|...=-++++.||+..++++++=|..-.+|... ..+..+.+++.+..
T Consensus 134 ~~~~~~L~~~gL~~~~-----~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~ 208 (330)
T PRK15093 134 RRAIELLHRVGIKDHK-----DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN 208 (330)
T ss_pred HHHHHHHHHCCCCChH-----HHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 4566777777774210 00 02234555655666888999999999999988754443222 22333333444433
Q ss_pred CeEEEEEe
Q psy5985 92 QRGLILRN 99 (153)
Q Consensus 92 ~~~iIvva 99 (153)
+..+|+++
T Consensus 209 g~tii~it 216 (330)
T PRK15093 209 NTTILLIS 216 (330)
T ss_pred CCEEEEEE
Confidence 44555554
No 235
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=27.92 E-value=2.1e+02 Score=21.72 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=25.4
Q ss_pred HHHHhhcCCCEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy5985 53 TVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMA 88 (153)
Q Consensus 53 ~~aglA~gad~iliPE~~~~~~~l~~~i~~i~~~~~ 88 (153)
+..++++|++.+.+-+-..+-+++.+.++.+.+..+
T Consensus 18 l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~ 53 (180)
T PF02581_consen 18 LEAALAAGVDLVQLREKDLSDEELLELARRLAELCQ 53 (180)
T ss_dssp HHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhh
Confidence 467788999999999999888888777766654443
No 236
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=27.81 E-value=53 Score=27.88 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+...++++.+++++.|.+|-|||--++
T Consensus 63 ~~~v~~~~~~~~~~~~D~IIavGGGS~i 90 (351)
T cd08170 63 RAEIERLAEIARDNGADVVIGIGGGKTL 90 (351)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCchhh
Confidence 4568899999999999999999997665
No 237
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=27.75 E-value=2.3e+02 Score=22.22 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 50 YLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 50 ~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvva 99 (153)
-+++..+++..++++++=|..-.+|.. .+.+..+.+++.+ ++..+|+++
T Consensus 145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~s 194 (237)
T PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVE 194 (237)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 467788888999999998764433322 2233233334443 355666665
No 238
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=27.72 E-value=55 Score=25.61 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=18.6
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCC
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGF 34 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGd 34 (153)
+.+..+.+.|++++| -+++|||-
T Consensus 3 ~~l~~~~~~L~~~gv-~~~ivGG~ 25 (181)
T PF09970_consen 3 EALKEILEELNKRGV-EYVIVGGA 25 (181)
T ss_pred HHHHHHHHHHHHcCC-eEEEECHH
Confidence 357889999999999 57778874
No 239
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.66 E-value=2.1e+02 Score=23.29 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=33.8
Q ss_pred EEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 41 LKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 41 VEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
-+.-|...=-++++.+++..|+++++=|..-.+|... +.+..+.+++.+..+..+|+++
T Consensus 139 ~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~s 198 (277)
T PRK13642 139 ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSIT 198 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3444555556788899999999999977643333222 2222233344433345566554
No 240
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=27.61 E-value=2.5e+02 Score=21.30 Aligned_cols=78 Identities=10% Similarity=0.121 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcC
Q psy5985 13 LPQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEG 90 (153)
Q Consensus 13 ~~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~ 90 (153)
.+++.+.++..+++.+. + -.+-+.-|...=-+++..+++..|+++++=|.. +|.+... .+..+.+++.+
T Consensus 112 ~~~~~~~l~~~~l~~~~-----~--~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~-~l~~~l~~~~~- 182 (206)
T TIGR03608 112 REKKKEALEKVGLNLKL-----K--QKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRD-EVLDLLLELND- 182 (206)
T ss_pred HHHHHHHHHHcCchhhh-----c--CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHH-HHHHHHHHHHh-
Confidence 34455667777664321 1 122344444445578899999999999998864 4433322 22223334433
Q ss_pred CCeEEEEEe
Q psy5985 91 VQRGLILRN 99 (153)
Q Consensus 91 ~~~~iIvva 99 (153)
.+..+|+++
T Consensus 183 ~~~tii~~s 191 (206)
T TIGR03608 183 EGKTIIIVT 191 (206)
T ss_pred cCCEEEEEe
Confidence 245666665
No 241
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=27.53 E-value=1.3e+02 Score=22.76 Aligned_cols=57 Identities=16% Similarity=0.016 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCe------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCC
Q psy5985 15 QIAAKLKELKIQALLIIGGFEVS------------FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKF 71 (153)
Q Consensus 15 ~~~~~L~~~~Id~LvvIGGdgs~------------v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~ 71 (153)
.+++.|++++|+.++-+-|+..+ -+|.-.-=+.++|.|..-+.++++-.+++---|-
T Consensus 2 ~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t~~gv~~~t~GpG 70 (162)
T cd07038 2 YLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVKGLGALVTTYGVG 70 (162)
T ss_pred HHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCcc
Confidence 47889999999999999888654 2333333355778887666666777777655554
No 242
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=27.50 E-value=1.1e+02 Score=22.07 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=16.6
Q ss_pred HHHHHHHcCCcEEEEEcCCCCe
Q psy5985 16 IAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 16 ~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
+.+.+.++++|.++++.||+-|
T Consensus 91 ~~~~~~~~~~d~ivLvSgD~Df 112 (149)
T cd06167 91 ALELAYKRRIDTIVLVSGDSDF 112 (149)
T ss_pred HHHHhhhcCCCEEEEEECCccH
Confidence 4455566688999999998865
No 243
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=27.46 E-value=2.1e+02 Score=23.30 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=32.2
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-++++.+++..|+++++-|..-.+|.- .+.+..+...+.+ .+..+|+++
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiis 200 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVS 200 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEc
Confidence 34444444567888899999999998874444321 1222222333332 345666665
No 244
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=27.33 E-value=2.6e+02 Score=21.55 Aligned_cols=50 Identities=14% Similarity=0.063 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 50 YLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 50 ~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
-+++..+++..++++++=|..-.+|.-. +.+..+.+++.+..+..+|+++
T Consensus 79 rv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivs 129 (177)
T cd03222 79 RVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129 (177)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 4567778888999999977644443222 2222233333332235666665
No 245
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=27.22 E-value=72 Score=23.89 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHcCC-cEEEEEcCCCCeEEEEEecCCCcCHHH--HHHHhhcCCCEEEEcCCCCCHHHHHHHH
Q psy5985 11 KKLPQIAAKLKELKI-QALLIIGGFEVSFFALKTMGGYCGYLA--TVAGLAGGADAAYIYEEKFSIKDLQQDL 80 (153)
Q Consensus 11 e~~~~~~~~L~~~~I-d~LvvIGGdgs~v~iVEvMGR~aG~LA--~~aglA~gad~iliPE~~~~~~~l~~~i 80 (153)
+.+++.++.|++.++ |..+++||.-.. + ....+ -..-.+.|.|.++-|.. +++++.+++
T Consensus 65 ~~~~~~~~~l~~~gl~~v~vivGG~~~i-------~--~~d~~~~~~~L~~~Gv~~vf~pgt--~~~~i~~~l 126 (128)
T cd02072 65 IDCKGLREKCDEAGLKDILLYVGGNLVV-------G--KQDFEDVEKRFKEMGFDRVFAPGT--PPEEAIADL 126 (128)
T ss_pred HHHHHHHHHHHHCCCCCCeEEEECCCCC-------C--hhhhHHHHHHHHHcCCCEEECcCC--CHHHHHHHH
Confidence 468899999999999 888999997410 0 11111 12234569999998887 556776654
No 246
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=27.17 E-value=2.5e+02 Score=23.44 Aligned_cols=50 Identities=18% Similarity=0.108 Sum_probs=34.3
Q ss_pred HHHHHHcCCcEEEEEc-CCCCe-------------------------EEEEEecCCCcCHHHHHHHhhcCCCEEEEc
Q psy5985 17 AAKLKELKIQALLIIG-GFEVS-------------------------FFALKTMGGYCGYLATVAGLAGGADAAYIY 67 (153)
Q Consensus 17 ~~~L~~~~Id~LvvIG-Gdgs~-------------------------v~iVEvMGR~aG~LA~~aglA~gad~iliP 67 (153)
++.|++.++|++++== +|--| -+=|.++ ||++.-|+..|.|+|||+|=+.
T Consensus 35 a~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL-~nd~~aalaiA~A~ga~FIRv~ 110 (254)
T PF03437_consen 35 AEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVNVL-RNDPKAALAIAAATGADFIRVN 110 (254)
T ss_pred HHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeee-cCCCHHHHHHHHHhCCCEEEec
Confidence 3678899999998865 44433 0111111 6788888999999999987644
No 247
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=27.08 E-value=57 Score=28.90 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.5
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCC
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGF 34 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGd 34 (153)
-+...++++-+|+.+||.|+.+||-
T Consensus 71 ~~Tv~kaV~i~kee~idflLAVGGG 95 (384)
T COG1979 71 LETLMKAVEICKEENIDFLLAVGGG 95 (384)
T ss_pred HHHHHHHHHHHHHcCceEEEEecCc
Confidence 3568899999999999999999994
No 248
>KOG1115|consensus
Probab=27.05 E-value=21 Score=32.45 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=14.5
Q ss_pred HHcCCcEEEEEcCCCCe
Q psy5985 21 KELKIQALLIIGGFEVS 37 (153)
Q Consensus 21 ~~~~Id~LvvIGGdgs~ 37 (153)
+-+.+|++|.+||||-|
T Consensus 214 ~~~~yDGiv~VGGDG~F 230 (516)
T KOG1115|consen 214 ELHTYDGIVAVGGDGFF 230 (516)
T ss_pred hhhhcccEEEecCchhH
Confidence 34679999999999977
No 249
>PRK13409 putative ATPase RIL; Provisional
Probab=26.91 E-value=1.8e+02 Score=26.88 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=36.7
Q ss_pred EEEecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 40 ALKTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 40 iVEvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
+-+.-|..-=-+|++.+++..|+++++-|.. .|.+..... ..+.+++.+..+..+|+++
T Consensus 451 ~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l-~~~l~~l~~~~g~tviivs 511 (590)
T PRK13409 451 VKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAV-AKAIRRIAEEREATALVVD 511 (590)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHHhCCCEEEEEe
Confidence 3445555566778889999999999998874 454433332 2334455443345666665
No 250
>PLN02540 methylenetetrahydrofolate reductase
Probab=26.78 E-value=64 Score=30.13 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=27.6
Q ss_pred cCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCCC
Q psy5985 4 TKRTLPEKKLPQIAAKLKELKIQALLIIGGFEV 36 (153)
Q Consensus 4 TsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdgs 36 (153)
|||....+.++..+..+++.+|+-++++.||-.
T Consensus 66 TCrd~n~~~L~~~L~~a~~~GIrNILALrGDpp 98 (565)
T PLN02540 66 TCTNMPVEKIDHALETIKSNGIQNILALRGDPP 98 (565)
T ss_pred eecCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 556555567888899999999999999999975
No 251
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=26.61 E-value=2.6e+02 Score=21.51 Aligned_cols=56 Identities=9% Similarity=-0.065 Sum_probs=31.7
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
.-|...=-+++..+++..++++++=|..-.+|... +.+..+.+++.+ ++..+|+++
T Consensus 128 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~s 184 (207)
T PRK13539 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAAT 184 (207)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 33444445778888889999999977644443222 222223333333 345666665
No 252
>TIGR02830 spore_III_AG stage III sporulation protein AG. CC A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AG.
Probab=26.40 E-value=73 Score=25.48 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=12.1
Q ss_pred CCeEEEEEeCCCCCC
Q psy5985 91 VQRGLILRNEKCNDN 105 (153)
Q Consensus 91 ~~~~iIvvaEG~~~~ 105 (153)
+=.+++|||||+.+.
T Consensus 145 ~I~GVlVVAeGa~~~ 159 (186)
T TIGR02830 145 EIRGVLVVAEGAENP 159 (186)
T ss_pred CceEEEEEeeCCCCH
Confidence 345899999999874
No 253
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=26.33 E-value=96 Score=24.70 Aligned_cols=36 Identities=31% Similarity=0.342 Sum_probs=26.2
Q ss_pred HcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEE
Q psy5985 22 ELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAY 65 (153)
Q Consensus 22 ~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~il 65 (153)
|..-..+++|||.+.| .-+|++|..+++..|+.++.
T Consensus 5 K~~~g~vl~i~Gs~~~--------~GA~~la~~~a~~~G~g~vt 40 (254)
T cd01171 5 KGSRGRVLVIGGSRGY--------TGAAYLAALAALRAGAGLVT 40 (254)
T ss_pred CcCCCeEEEEeCCCCC--------ccHHHHHHHHHHHHccCEEE
Confidence 4455578899997754 35788888888888887743
No 254
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.29 E-value=2.3e+02 Score=23.30 Aligned_cols=79 Identities=9% Similarity=0.072 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCc--EEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcC
Q psy5985 14 PQIAAKLKELKIQ--ALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEG 90 (153)
Q Consensus 14 ~~~~~~L~~~~Id--~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~ 90 (153)
+++.+.|+..+++ .+. | -.+-+.-|...=-++++.+++..++++++=|..-.+|... ..+..+.+.+.+.
T Consensus 121 ~~~~~~l~~~gL~~~~~~----~---~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~ 193 (287)
T PRK13637 121 NRVKRAMNIVGLDYEDYK----D---KSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE 193 (287)
T ss_pred HHHHHHHHHcCCCchhhc----c---CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh
Confidence 4455667777775 110 0 1123444555556888999999999999988744443222 2223333344332
Q ss_pred CCeEEEEEe
Q psy5985 91 VQRGLILRN 99 (153)
Q Consensus 91 ~~~~iIvva 99 (153)
.+..+|+++
T Consensus 194 ~g~tvi~vt 202 (287)
T PRK13637 194 YNMTIILVS 202 (287)
T ss_pred cCCEEEEEe
Confidence 344555554
No 255
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=26.28 E-value=69 Score=27.57 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+..+++++.+++.++|.+|-|||--++
T Consensus 69 ~~~v~~~~~~~~~~~~D~IiavGGGS~i 96 (380)
T cd08185 69 TTTVMEGAALAREEGCDFVVGLGGGSSM 96 (380)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccHH
Confidence 4568889999999999999999996554
No 256
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=26.17 E-value=56 Score=27.06 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=28.8
Q ss_pred CeecCCCCC--------CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 1 MLGTKRTLP--------EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 1 iLgTsR~~~--------~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.||||.+-+ ..-.+.+++..+.-+|+.|++-|-|++.
T Consensus 62 VLGtsky~~~g~~N~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~ 106 (235)
T COG2949 62 VLGTSKYLAKGPPNRYYTYRIDAAIALYKAGKVNYLLLSGDNATV 106 (235)
T ss_pred EEeccccccCCCccHhHHHHHHHHHHHHhcCCeeEEEEecCCCcc
Confidence 489984322 2347788899999999999999999886
No 257
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=25.84 E-value=1.6e+02 Score=24.16 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCe-----EEEEEecCCCcCHHHHHHHhh
Q psy5985 13 LPQIAAKLKELKIQALLIIGGFEVS-----FFALKTMGGYCGYLATVAGLA 58 (153)
Q Consensus 13 ~~~~~~~L~~~~Id~LvvIGGdgs~-----v~iVEvMGR~aG~LA~~aglA 58 (153)
.+...+.|+.-+..-|+|.||-||+ .-++-+=....-|.+...+-|
T Consensus 85 ~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~ey~~~A~~~a 135 (211)
T COG2910 85 IEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAEYKPEALAQA 135 (211)
T ss_pred HHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecCCCCchhHHHHHHHHH
Confidence 5567788898899999999999998 666777677777766554433
No 258
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.75 E-value=2.2e+02 Score=22.12 Aligned_cols=49 Identities=8% Similarity=0.047 Sum_probs=29.1
Q ss_pred cCHHHHHHHhhcCCCEEEEcCC--CCCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 48 CGYLATVAGLAGGADAAYIYEE--KFSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 48 aG~LA~~aglA~gad~iliPE~--~~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
.=-+++..+++..|+++++=|. .+|.+... .+..+.+++.+ +..+|+++
T Consensus 144 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~-~l~~~l~~~~~--~~tii~~s 194 (234)
T cd03251 144 RQRIAIARALLKDPPILILDEATSALDTESER-LVQAALERLMK--NRTTFVIA 194 (234)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHH-HHHHHHHHhcC--CCEEEEEe
Confidence 3346788889999999999665 44544322 22233334432 45666665
No 259
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=25.74 E-value=2.8e+02 Score=21.13 Aligned_cols=78 Identities=24% Similarity=0.251 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~ 92 (153)
+++.+.|+..+++.+. . -.+-+.-|...=-++++.+++..|+++++=|..-.+|.- .+.+..+.+.+.+ ++
T Consensus 105 ~~~~~~l~~~~l~~~~-----~--~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ 176 (205)
T cd03226 105 EQAETVLKDLDLYALK-----E--RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QG 176 (205)
T ss_pred HHHHHHHHHcCCchhc-----C--CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CC
Confidence 3555666766664321 0 112234444445578888899999999998864333322 2233333434432 34
Q ss_pred eEEEEEe
Q psy5985 93 RGLILRN 99 (153)
Q Consensus 93 ~~iIvva 99 (153)
..+|+++
T Consensus 177 ~tii~~s 183 (205)
T cd03226 177 KAVIVIT 183 (205)
T ss_pred CEEEEEe
Confidence 5666666
No 260
>PLN02167 UDP-glycosyltransferase family protein
Probab=25.70 E-value=1.5e+02 Score=26.56 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=48.1
Q ss_pred eecCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCCC--------e-----------EEEEE--------------ecCCCc
Q psy5985 2 LGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFEV--------S-----------FFALK--------------TMGGYC 48 (153)
Q Consensus 2 LgTsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdgs--------~-----------v~iVE--------------vMGR~a 48 (153)
+||-...+.+.++.++..|++.+...|.+++.+.. + ..++. ..=-||
T Consensus 287 fGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~ 366 (475)
T PLN02167 287 FGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHC 366 (475)
T ss_pred ecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeC
Confidence 35533333456888999999999999999985311 1 12222 123589
Q ss_pred CHHHHHHHhhcCCCEEEEcCC
Q psy5985 49 GYLATVAGLAGGADAAYIYEE 69 (153)
Q Consensus 49 G~LA~~aglA~gad~iliPE~ 69 (153)
||-.+.-+++.|.-++.+|=.
T Consensus 367 G~nS~~Eal~~GvP~l~~P~~ 387 (475)
T PLN02167 367 GWNSVLESLWFGVPIATWPMY 387 (475)
T ss_pred CcccHHHHHHcCCCEEecccc
Confidence 999999999999999998843
No 261
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=25.69 E-value=75 Score=27.40 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=22.9
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+..+++++.++..+.|++|-|||=-.+
T Consensus 72 ~~~v~~~~~~~~~~~~D~IIaiGGGS~i 99 (382)
T cd08187 72 LETVREGIELCKEEKVDFILAVGGGSVI 99 (382)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCChHHH
Confidence 3567888999999999999999985444
No 262
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=25.65 E-value=2.9e+02 Score=21.16 Aligned_cols=50 Identities=12% Similarity=0.030 Sum_probs=30.2
Q ss_pred CHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 49 GYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 49 G~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
=-+++..+++..|+++++=|..-.+|... +.+..+.+++.+ ++..+|+++
T Consensus 111 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~s 161 (200)
T cd03217 111 KRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIIT 161 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 34788888999999999987654443322 222233334433 345677766
No 263
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=25.65 E-value=2.7e+02 Score=21.51 Aligned_cols=50 Identities=16% Similarity=0.164 Sum_probs=29.8
Q ss_pred CHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 49 GYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 49 G~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvva 99 (153)
=-+++..+++..++++++=|..-.+|.- .+.+..+.+++.+ .+..+|+++
T Consensus 131 ~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~s 181 (223)
T TIGR03740 131 QRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSS 181 (223)
T ss_pred HHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEc
Confidence 3467788888999999998874444322 2233333334433 345666666
No 264
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=25.59 E-value=4.1e+02 Score=22.41 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=43.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCCe--------EEEEEecCCCcCHHHHH-HHhhcCCCEEEEcCCCCCHHHHH
Q psy5985 12 KLPQIAAKLKELKIQALLIIGGFEVS--------FFALKTMGGYCGYLATV-AGLAGGADAAYIYEEKFSIKDLQ 77 (153)
Q Consensus 12 ~~~~~~~~L~~~~Id~LvvIGGdgs~--------v~iVEvMGR~aG~LA~~-aglA~gad~iliPE~~~~~~~l~ 77 (153)
+...+.+.|++.+++...++.++.|+ .-+.=++++..|.-+.. -.-..|.-++..| |+.++...
T Consensus 167 d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~p~~~~~--p~G~~~t~ 239 (399)
T cd00316 167 DLRELKRLLEEMGIRVNALFDGGTTVEELRELGNAKLNLVLCRESGLYLARYLEEKYGIPYILIN--PIGLEATD 239 (399)
T ss_pred hHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhccCcEEEEecHhHHHHHHHHHHHHhCCCeEEeC--CcCHHHHH
Confidence 67899999999999999999998887 33334466655544322 1112477777777 66554433
No 265
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=25.59 E-value=1.1e+02 Score=22.11 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=26.2
Q ss_pred CHHHHHHHhhcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHcCCC
Q psy5985 49 GYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQ 92 (153)
Q Consensus 49 G~LA~~aglA~gad~iliPE~~~~~~~l~~~i~~i~~~~~~~~~ 92 (153)
|-||+-+||+ |..++-++|...++.+..||+.++.
T Consensus 31 gRiAlKAGLg---------eieI~d~eL~~aFeeiAaRFR~g~~ 65 (98)
T PRK13848 31 GRIALKAGLG---------EIEIEEAELQAAFEELAKRFRGGKG 65 (98)
T ss_pred HHHHHHcCcc---------ccccCHHHHHHHHHHHHHHHhcCCC
Confidence 5567777764 6677777888888888889988663
No 266
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=25.55 E-value=3.9e+02 Score=22.14 Aligned_cols=103 Identities=18% Similarity=0.134 Sum_probs=58.8
Q ss_pred CCcHHHHHHHHHHcC-CcEEEEEcCCCCe----------------------EEEEEecCCCcCHHHH---HHHhhcCCCE
Q psy5985 10 EKKLPQIAAKLKELK-IQALLIIGGFEVS----------------------FFALKTMGGYCGYLAT---VAGLAGGADA 63 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~-Id~LvvIGGdgs~----------------------v~iVEvMGR~aG~LA~---~aglA~gad~ 63 (153)
.+.+++.++.+.+.+ +|+|++.|..|=+ +-|+=-.|..+=.-+. ..+-..|||.
T Consensus 20 ~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~ 99 (290)
T TIGR00683 20 EKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDC 99 (290)
T ss_pred HHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCE
Confidence 346888888999999 9999999988875 2232222322212111 1223369998
Q ss_pred EEEcCC---CCCHHHHHHHHHHHHHHHHcCCCeEEEEEeCC--CCCCcChHHHHHHH
Q psy5985 64 AYIYEE---KFSIKDLQQDLYHMASKMAEGVQRGLILRNEK--CNDNYNTDFIYRLY 115 (153)
Q Consensus 64 iliPE~---~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG--~~~~~~~~~l~~~~ 115 (153)
+++.-. +.+.+++.+..+.+.+ ...+--+++-.-= .+...+.+.+.++.
T Consensus 100 v~v~~P~y~~~~~~~i~~yf~~v~~---~~~~lpv~lYn~P~~tg~~l~~~~i~~L~ 153 (290)
T TIGR00683 100 LSAVTPFYYKFSFPEIKHYYDTIIA---ETGGLNMIVYSIPFLTGVNMGIEQFGELY 153 (290)
T ss_pred EEEeCCcCCCCCHHHHHHHHHHHHh---hCCCCCEEEEeCccccccCcCHHHHHHHh
Confidence 777433 4566777777665542 2213455655432 12234456666654
No 267
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=25.53 E-value=1.3e+02 Score=25.56 Aligned_cols=44 Identities=23% Similarity=0.221 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcC
Q psy5985 12 KLPQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYE 68 (153)
Q Consensus 12 ~~~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE 68 (153)
..+++++.+++ +.|.+|.||| ..++++|=..|+-.|..+|.+|=
T Consensus 69 ~v~~~~~~~~~-~~d~IIaiGG------------Gsv~D~aK~iA~~~gip~I~VPT 112 (332)
T cd08549 69 ELGEVLIKLDK-DTEFLLGIGS------------GTIIDLVKFVSFKVGKPFISVPT 112 (332)
T ss_pred HHHHHHHHhhc-CCCEEEEECC------------cHHHHHHHHHHHHcCCCEEEeCC
Confidence 35555566655 6666666665 44455554444444555555554
No 268
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.51 E-value=2.5e+02 Score=22.55 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=32.9
Q ss_pred CCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 45 GGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 45 GR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
|...=-+++..+++..++++++=|..-.+|... +.+..+..++.+ +..+|+++=
T Consensus 156 ~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh 210 (257)
T PRK14246 156 GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSH 210 (257)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEEC
Confidence 333345778888999999999988755443332 233334444433 356777763
No 269
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=25.41 E-value=2.8e+02 Score=21.51 Aligned_cols=55 Identities=15% Similarity=0.232 Sum_probs=32.2
Q ss_pred CCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 45 GGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 45 GR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
|...=-+++..+++..|+++++=|..-.+|.-. +.+..+.+++.+ ++..+|+++-
T Consensus 136 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH 191 (232)
T cd03218 136 GGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDH 191 (232)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeC
Confidence 333344788899999999999988644333222 222233334433 3456777763
No 270
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=25.38 E-value=2.8e+02 Score=21.73 Aligned_cols=51 Identities=12% Similarity=0.095 Sum_probs=30.2
Q ss_pred cCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 48 CGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 48 aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
.=-+++..+++..|+++++=|.. .|.+... .+..+.+++.+ ++..+|+++=
T Consensus 142 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~-~l~~~l~~~~~-~~~tiii~sH 194 (240)
T PRK09493 142 QQRVAIARALAVKPKLMLFDEPTSALDPELRH-EVLKVMQDLAE-EGMTMVIVTH 194 (240)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH-HHHHHHHHHHH-cCCEEEEEeC
Confidence 33477888899999999997764 3433322 22223334443 3456777663
No 271
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.38 E-value=2.2e+02 Score=22.17 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 50 YLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 50 ~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
-+++..+++..|+++++=|..-.+|.-. +.+..+.+++.+ +..+|+++
T Consensus 145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~s 193 (236)
T cd03253 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIA 193 (236)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEc
Confidence 3678889999999999988643333221 222223333332 44566666
No 272
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=25.37 E-value=2.4e+02 Score=23.01 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=29.9
Q ss_pred CCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 45 GGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 45 GR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
|...=-+++..+++..|+++++=|.. .|..... .+..+.+++.+..+..+|+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~-~l~~~l~~l~~~~g~tillvt 202 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR-EVVNTIKELNKKYGITIILIT 202 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH-HHHHHHHHHHHhcCCEEEEEe
Confidence 33333567888899999999997764 3433222 222233344332344555554
No 273
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=25.28 E-value=2.3e+02 Score=23.86 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCH
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSI 73 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~ 73 (153)
+++.+.|+..+++.+. . -.+-+.-|...=-+|++.+++..++++++=|..-.+
T Consensus 79 ~~~~~~l~~~~l~~~~-----~--~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~L 131 (325)
T TIGR01187 79 PRVLEALRLVQLEEFA-----D--RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSAL 131 (325)
T ss_pred HHHHHHHHHcCCcchh-----c--CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccC
Confidence 3455667777665321 1 123344555556688899999999999997764333
No 274
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=25.23 E-value=2e+02 Score=18.99 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=25.1
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCeEEE
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVSFFA 40 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~v~i 40 (153)
.+....+++.+.+++++.+.|+-.+|.++.+
T Consensus 75 ~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gv 105 (114)
T cd04801 75 EESLAEVLKLLEEQGLDELAVVEDSGQVIGL 105 (114)
T ss_pred CCcHHHHHHHHHHCCCCeeEEEcCCCcEEEE
Confidence 4568899999999999999999877765333
No 275
>KOG2672|consensus
Probab=25.15 E-value=70 Score=27.81 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=22.9
Q ss_pred eecCCCCC---CCcHHHHHHHHHHcCCcEEEEE
Q psy5985 2 LGTKRTLP---EKKLPQIAAKLKELKIQALLII 31 (153)
Q Consensus 2 LgTsR~~~---~e~~~~~~~~L~~~~Id~LvvI 31 (153)
.+|||.+| +..-+..++.++.+++|++|+-
T Consensus 130 VKTsR~PpPlDp~EPeNTAeAIasWgl~YiVlT 162 (360)
T KOG2672|consen 130 VKTSRNPPPLDPNEPENTAEAIASWGLDYIVLT 162 (360)
T ss_pred eecCCCCcCCCCCCcccHHHHHHHcCCCeEEEE
Confidence 46889776 3345667778999999999875
No 276
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.12 E-value=2.5e+02 Score=23.05 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCc-EEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCC
Q psy5985 15 QIAAKLKELKIQ-ALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQ 92 (153)
Q Consensus 15 ~~~~~L~~~~Id-~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~ 92 (153)
++.+.|+..+++ .+. + -.+-+.-|...=-+|++.+++..++++++=|..-.+|... +.+..+.+++++ .+
T Consensus 123 ~~~~~l~~~~L~~~~~----~---~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g 194 (288)
T PRK13643 123 IAAEKLEMVGLADEFW----E---KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SG 194 (288)
T ss_pred HHHHHHHHcCCChhhc----c---CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CC
Confidence 455666666663 221 0 1122334444455889999999999999988643333221 222223334443 24
Q ss_pred eEEEEEe
Q psy5985 93 RGLILRN 99 (153)
Q Consensus 93 ~~iIvva 99 (153)
..||+++
T Consensus 195 ~til~vt 201 (288)
T PRK13643 195 QTVVLVT 201 (288)
T ss_pred CEEEEEe
Confidence 4455544
No 277
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=25.08 E-value=67 Score=27.63 Aligned_cols=28 Identities=14% Similarity=0.149 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+..+++++.++++++|.+|-|||--.+
T Consensus 66 ~~~v~~~~~~~~~~~~D~IIaiGGGS~~ 93 (375)
T cd08194 66 DESVEEGVKLAKEGGCDVIIALGGGSPI 93 (375)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 4568899999999999999999985443
No 278
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=24.74 E-value=2.4e+02 Score=23.76 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=13.0
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 13 LPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 13 ~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.++.++.|.+++||. +-+||-++
T Consensus 45 t~~~~~~L~~~GvDv--iT~GNH~w 67 (253)
T PF13277_consen 45 TPKIAEELFKAGVDV--ITMGNHIW 67 (253)
T ss_dssp -HHHHHHHHHHT-SE--EE--TTTT
T ss_pred CHHHHHHHHhcCCCE--EecCcccc
Confidence 456677777777774 45677776
No 279
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=24.72 E-value=2e+02 Score=23.22 Aligned_cols=61 Identities=15% Similarity=0.044 Sum_probs=27.6
Q ss_pred EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 38 FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 38 v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
+.++|+-|..-|.+.+..-... +. +--|.......+..+.+++..+.+++.+-..+|+++=
T Consensus 120 ~~i~~~~g~kIgviG~~~~~~~-~~-~~~~~~~~~~~d~~~~~~~~v~~~~~~~~D~iVvl~H 180 (257)
T cd07406 120 SAIIERAGVKIGLLGLVEEEWL-ET-LTIDPEYVRYRDYVETARELVDELREQGADLIIALTH 180 (257)
T ss_pred eEEEEECCeEEEEEEEeccccc-cc-ccCCCCcceEcCHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 5677777777777765433211 00 0000111222344444444444444444456666663
No 280
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=24.67 E-value=1.1e+02 Score=25.33 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=40.7
Q ss_pred EcCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCcChHHHHHHHHhhcCCCceeeeeeCCccccCCCCCcceEe
Q psy5985 66 IYEEKFSIKDLQQDLYHMASKMAEGVQRGLILRNEKCNDNYNTDFIYRLYSEEGKGLFSARQNVLAKHDSAYEEEGMYIT 145 (153)
Q Consensus 66 iPE~~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG~~~~~~~~~l~~~~~~e~~~~~~~R~~vLGh~QR~~~p~~~~~~ 145 (153)
+|.+|++-..+...+.. .- -....+=+++||+.+ ++. ++. .+-.=+.|-+-|.+++|+-|||
T Consensus 24 l~~~pl~~~~iv~~mA~---Aa--~~gGAvgiR~~gv~d------Ika-i~~------~v~vPIIGIiKrd~~~s~v~IT 85 (229)
T COG3010 24 LPGEPLDSPEIVAAMAL---AA--EQGGAVGIRIEGVED------IKA-IRA------VVDVPIIGIIKRDYPDSPVRIT 85 (229)
T ss_pred CCCCCCcchhHHHHHHH---HH--HhCCcceEeecchhh------HHH-HHh------hCCCCeEEEEecCCCCCCceec
Confidence 47778776666554421 11 124456678887643 433 222 3455688999999999999998
Q ss_pred ee
Q psy5985 146 VE 147 (153)
Q Consensus 146 ~~ 147 (153)
--
T Consensus 86 pt 87 (229)
T COG3010 86 PT 87 (229)
T ss_pred cc
Confidence 53
No 281
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=24.57 E-value=2.4e+02 Score=23.99 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHH
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIK 74 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~ 74 (153)
+++.+.|+..+++.- -.--+.-+.-|...=-++++.|++..+++++.=|..-.+|
T Consensus 139 ~~~~~~l~~vgl~~~------~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD 193 (331)
T PRK15079 139 DRVKAMMLKVGLLPN------LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD 193 (331)
T ss_pred HHHHHHHHHcCCChH------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 445566666666310 0012344666666667888999999999999988744443
No 282
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=24.54 E-value=2.1e+02 Score=18.76 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=24.5
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCeEEE
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVSFFA 40 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~v~i 40 (153)
.+....+.+.+.+++++.|.|+-.+|.++.+
T Consensus 57 ~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Gi 87 (96)
T cd04614 57 RTTVSECAQKMKRNRIEQIPIINGNDKLIGL 87 (96)
T ss_pred CCCHHHHHHHHHHhCCCeeeEECCCCcEEEE
Confidence 4557889999999999999999876655333
No 283
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=24.54 E-value=2.9e+02 Score=21.42 Aligned_cols=77 Identities=12% Similarity=0.149 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEE-EEEecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFF-ALKTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEG 90 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~-iVEvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~ 90 (153)
+++.+.++..+++.+.- . -. .-+.-|...=-+++..+++..++++++=|.. .|.+.- +.+..+.+++.+
T Consensus 118 ~~~~~~l~~~~l~~~~~-----~-~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~-~~l~~~l~~~~~- 189 (227)
T cd03260 118 ERVEEALRKAALWDEVK-----D-RLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIST-AKIEELIAELKK- 189 (227)
T ss_pred HHHHHHHHHcCCChHHh-----c-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH-HHHHHHHHHHhh-
Confidence 44556667666643210 0 01 2345555666788899999999999996654 343322 222233334433
Q ss_pred CCeEEEEEe
Q psy5985 91 VQRGLILRN 99 (153)
Q Consensus 91 ~~~~iIvva 99 (153)
+ ..+|+++
T Consensus 190 ~-~tii~~s 197 (227)
T cd03260 190 E-YTIVIVT 197 (227)
T ss_pred C-cEEEEEe
Confidence 2 5666665
No 284
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=24.52 E-value=2.9e+02 Score=21.75 Aligned_cols=57 Identities=12% Similarity=0.011 Sum_probs=32.9
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
.-|...=-+++..+++..|+++++=|..-.+|... +.+..+.+.+.+ ++..+|+++-
T Consensus 152 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH 209 (252)
T CHL00131 152 FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITH 209 (252)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Confidence 34444456788899999999999977643333222 222223333332 3456777763
No 285
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=24.50 E-value=51 Score=28.49 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=23.3
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCC
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEV 36 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs 36 (153)
+.++++.+.+++.+.|.+||||-|..
T Consensus 73 ~a~~~~~~~i~~~~PDvlVIispDH~ 98 (328)
T cd07366 73 AALDRLADFIRAARIDVAVIVGDDQK 98 (328)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCccH
Confidence 46889999999999999999999855
No 286
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=24.48 E-value=70 Score=27.53 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+..+++++.+++++.|.+|-|||--.+
T Consensus 71 ~~~v~~~~~~~~~~~~D~IIavGGGS~i 98 (377)
T cd08176 71 ITNVKDGLAVFKKEGCDFIISIGGGSPH 98 (377)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcHHH
Confidence 4568899999999999999999995443
No 287
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=24.41 E-value=3.1e+02 Score=20.60 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=32.6
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-+++..+++..|+++++=|.. +|.+.. +.+..+.+.+.+ ++..+|+++
T Consensus 127 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~-~~~~~~l~~~~~-~~~tili~s 184 (190)
T TIGR01166 127 CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR-EQMLAILRRLRA-EGMTVVIST 184 (190)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH-HHHHHHHHHHHH-cCCEEEEEe
Confidence 44455555577888899999999987764 443322 222223334433 345666665
No 288
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=24.35 E-value=89 Score=23.75 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCC
Q psy5985 12 KLPQIAAKLKELKIQALLIIGGFE 35 (153)
Q Consensus 12 ~~~~~~~~L~~~~Id~LvvIGGdg 35 (153)
.++++++..++.++| +++++||=
T Consensus 29 ~~~~~~~~~~~~~~d-~i~~~GD~ 51 (223)
T cd00840 29 AFEEIVELAIEEKVD-FVLIAGDL 51 (223)
T ss_pred HHHHHHHHHHhcCCC-EEEECCcc
Confidence 478888888899999 57778885
No 289
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=24.29 E-value=2.9e+02 Score=21.65 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=30.4
Q ss_pred cCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 48 CGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 48 aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
.=-+++..+++..++++++=|..-.+|.- .+.+..+.+++++ ++..+|+++-
T Consensus 147 ~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh 199 (242)
T PRK11124 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTH 199 (242)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeC
Confidence 33477888899999999997764333322 1222223334443 3456666663
No 290
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=24.28 E-value=3e+02 Score=20.94 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=31.8
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
.-|...=.+++..+++..++++++=|.. .|.+.. +.+..+.+++.+ ++..+|+++
T Consensus 137 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~-~~~~~~l~~~~~-~~~tiiivt 193 (214)
T cd03292 137 LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT-WEIMNLLKKINK-AGTTVVVAT 193 (214)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH-HHHHHHHHHHHH-cCCEEEEEe
Confidence 3344444578888999999999997764 443322 222223333432 345666666
No 291
>PRK15138 aldehyde reductase; Provisional
Probab=24.27 E-value=71 Score=27.82 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=24.2
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+..+++++..++.+.|.+|-|||--++
T Consensus 71 ~~~v~~~~~~~~~~~~D~IIaiGGGS~i 98 (387)
T PRK15138 71 YETLMKAVKLVREEKITFLLAVGGGSVL 98 (387)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCChHHH
Confidence 4568899999999999999999996555
No 292
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=24.22 E-value=72 Score=27.30 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=23.7
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+...++++.+++.+.|.+|-|||--.+
T Consensus 67 ~~~v~~~~~~~~~~~~d~IIaiGGGSvi 94 (370)
T cd08192 67 EAAVEAGLAAYRAGGCDGVIAFGGGSAL 94 (370)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 4568899999999999999999995544
No 293
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=24.21 E-value=71 Score=27.47 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=23.9
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+...++++.+++.+.|.+|-|||--.+
T Consensus 61 ~~~v~~~~~~~~~~~~D~IIaiGGGS~~ 88 (374)
T cd08183 61 VELVDAAVAEARNAGCDVVIAIGGGSVI 88 (374)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCchHH
Confidence 4568899999999999999999986554
No 294
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=24.19 E-value=4.9e+02 Score=22.77 Aligned_cols=59 Identities=22% Similarity=0.156 Sum_probs=40.4
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe----------EEEEEecCCCcCHHHHHHHhh--cCCCEEEEcCCCCCH
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS----------FFALKTMGGYCGYLATVAGLA--GGADAAYIYEEKFSI 73 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~----------v~iVEvMGR~aG~LA~~aglA--~gad~iliPE~~~~~ 73 (153)
.++..+.+-|++.+|+...++.|+.|+ ..+ ++++..|- .+...|. -|..++..| .|+.+
T Consensus 179 ~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~~A~lni--v~~~~~g~-~~a~~Lee~~GiP~~~~~-~P~G~ 249 (426)
T cd01972 179 EDVDEFKRLLNELGLRVNAIIAGGCSVEELERASEAAANV--TLCLDLGY-YLGAALEQRFGVPEIKAP-QPYGI 249 (426)
T ss_pred ccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEE--EEChhHHH-HHHHHHHHHhCCCeEecC-CccCH
Confidence 568899999999999999999999998 333 34554442 2223333 477777766 55544
No 295
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.13 E-value=2.6e+02 Score=22.83 Aligned_cols=79 Identities=13% Similarity=0.066 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~ 92 (153)
+++.+.++..+++.+. + -.+-+.-|...=-+++..+|+..++++++=|..-.+|... +.+..+.+++.+..+
T Consensus 120 ~~~~~~l~~~gL~~~~----~---~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g 192 (283)
T PRK13636 120 KRVDNALKRTGIEHLK----D---KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG 192 (283)
T ss_pred HHHHHHHHHCCChhhh----h---CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence 4455666777765421 1 1122333444445788889999999999988744443222 122223334443334
Q ss_pred eEEEEEe
Q psy5985 93 RGLILRN 99 (153)
Q Consensus 93 ~~iIvva 99 (153)
..+|+++
T Consensus 193 ~tillvs 199 (283)
T PRK13636 193 LTIIIAT 199 (283)
T ss_pred CEEEEEe
Confidence 4555554
No 296
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=24.08 E-value=2.6e+02 Score=23.36 Aligned_cols=54 Identities=17% Similarity=0.067 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcCCc-EEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCH
Q psy5985 13 LPQIAAKLKELKIQ-ALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSI 73 (153)
Q Consensus 13 ~~~~~~~L~~~~Id-~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~ 73 (153)
.+++.+.|+..+++ .+. + -.+-+.-|...=-+|++.+++..++++++=|..-.+
T Consensus 142 ~~~~~~~l~~~gL~~~~~----~---~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~L 196 (305)
T PRK13651 142 KKRAAKYIELVGLDESYL----Q---RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGL 196 (305)
T ss_pred HHHHHHHHHHcCCChhhh----h---CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 34556667766664 220 0 111223333344578899999999999998874433
No 297
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=24.06 E-value=75 Score=27.95 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=23.1
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCeEEEEEe
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVSFFALKT 43 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~v~iVEv 43 (153)
..++++++.|++.++..+|+++||==+.++.++
T Consensus 350 ~er~~Ll~~l~~~~~~~vV~LSGDvH~~~~~~~ 382 (453)
T PF09423_consen 350 AERQRLLDFLRESGIRNVVFLSGDVHASAASRI 382 (453)
T ss_dssp HHHHHHHHHHHHTT---EEEEE-SSSSEEEEEE
T ss_pred HHHHHHHHHHHhhCCCCEEEEecCcchheeeec
Confidence 458999999999999999999999766444443
No 298
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.97 E-value=2.8e+02 Score=22.40 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=31.7
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvva 99 (153)
.-|...=-++++.+++..++++++=|..-.+|.. .+.+..+.+++.+ .+..||+++
T Consensus 146 LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivs 202 (280)
T PRK13649 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVT 202 (280)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 3344444578889999999999997764333322 2222223334433 244555555
No 299
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=23.90 E-value=2.6e+02 Score=23.77 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHH
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIK 74 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~ 74 (153)
+++.+.|+..+++.+. . -.+-+.-|...=-++++.+++..|+++++=|..-.+|
T Consensus 119 ~~~~~~l~~~gL~~~~-----~--~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD 172 (343)
T PRK11153 119 ARVTELLELVGLSDKA-----D--RYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALD 172 (343)
T ss_pred HHHHHHHHHcCCchhh-----h--CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 3444556666654321 0 1223445555556888999999999999988643333
No 300
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.89 E-value=3e+02 Score=20.98 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~ 92 (153)
+++.+.++..+++... . -.+-+.-|...=-+++..+++..++++++=|..-.+|.-. +.+..+.+++.+ ++
T Consensus 107 ~~~~~~l~~~~l~~~~-----~--~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~ 178 (210)
T cd03269 107 RRIDEWLERLELSEYA-----N--KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AG 178 (210)
T ss_pred HHHHHHHHHcCChHHH-----h--CcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CC
Confidence 3445556666654321 0 1122344444455788899999999999877643333221 222223334433 34
Q ss_pred eEEEEEe
Q psy5985 93 RGLILRN 99 (153)
Q Consensus 93 ~~iIvva 99 (153)
..+|+++
T Consensus 179 ~tii~~s 185 (210)
T cd03269 179 KTVILST 185 (210)
T ss_pred CEEEEEC
Confidence 4666665
No 301
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=23.78 E-value=74 Score=27.49 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=22.5
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCC
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEV 36 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs 36 (153)
.+...++++.+++.++|.+|-|||--+
T Consensus 73 ~~~v~~~~~~~~~~~~D~IIaiGGGS~ 99 (382)
T PRK10624 73 IEVVKEGVEVFKASGADYLIAIGGGSP 99 (382)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 356788999999999999999999443
No 302
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=23.75 E-value=5e+02 Score=23.14 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=24.1
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+...+.+.|++.+++..-.+.|+.|+
T Consensus 212 gd~~el~~lL~~~Gl~v~~~~~g~~s~ 238 (457)
T TIGR01284 212 GDLWVLKKYFERMGIQVLSTFTGNGCY 238 (457)
T ss_pred hhHHHHHHHHHHcCCeEEEEECCCCCH
Confidence 567888899999999999999999987
No 303
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=23.74 E-value=2.4e+02 Score=23.82 Aligned_cols=81 Identities=9% Similarity=0.100 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCC
Q psy5985 13 LPQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGV 91 (153)
Q Consensus 13 ~~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~ 91 (153)
.+++.+.|+..+++.- +-. -+.-|.-|...=-++++-||+..+++++.=|..-.+|... +.+-.+.+++.+..
T Consensus 131 ~~~~~~~l~~~gL~~~----~~~--~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~ 204 (327)
T PRK11308 131 REKALAMMAKVGLRPE----HYD--RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL 204 (327)
T ss_pred HHHHHHHHHHCCCChH----Hhc--CCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc
Confidence 4566777888877410 001 2334566666667888999999999999988654443322 22222333443333
Q ss_pred CeEEEEEe
Q psy5985 92 QRGLILRN 99 (153)
Q Consensus 92 ~~~iIvva 99 (153)
+..+|+++
T Consensus 205 g~til~iT 212 (327)
T PRK11308 205 GLSYVFIS 212 (327)
T ss_pred CCEEEEEe
Confidence 44455444
No 304
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=23.58 E-value=2.9e+02 Score=21.93 Aligned_cols=77 Identities=10% Similarity=0.068 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGV 91 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~ 91 (153)
+++.+.|+..++..+. + -.+-+.-|...=-+++..+++..|+++++=|.. +|.+.. +.+..+.+++++ +
T Consensus 116 ~~~~~~l~~~~l~~~~----~---~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~-~~l~~~l~~~~~-~ 186 (256)
T TIGR03873 116 AVVDRALARTELSHLA----D---RDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQ-LETLALVRELAA-T 186 (256)
T ss_pred HHHHHHHHHcCcHhhh----c---CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHH-HHHHHHHHHHHh-c
Confidence 3455666666654221 0 112234444444578899999999999997764 343322 233333334432 2
Q ss_pred CeEEEEEe
Q psy5985 92 QRGLILRN 99 (153)
Q Consensus 92 ~~~iIvva 99 (153)
+..+|+++
T Consensus 187 ~~tiii~s 194 (256)
T TIGR03873 187 GVTVVAAL 194 (256)
T ss_pred CCEEEEEe
Confidence 34555555
No 305
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=23.53 E-value=2.9e+02 Score=21.80 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCe-EEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVS-FFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGV 91 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~-v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~ 91 (153)
+++.+.|+..+++..+- ... -.+-+.-|...=-+++..+++..|+++++=|..-.+|... +.+..+.+++.+
T Consensus 119 ~~~~~~l~~~~l~~~~~----~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-- 192 (247)
T TIGR00972 119 EIVEESLKKAALWDEVK----DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-- 192 (247)
T ss_pred HHHHHHHHHcCCCcchh----hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--
Confidence 34555667777652110 000 1122344444556788999999999999977644333222 222233334443
Q ss_pred CeEEEEEe
Q psy5985 92 QRGLILRN 99 (153)
Q Consensus 92 ~~~iIvva 99 (153)
+..+|+++
T Consensus 193 ~~tiiivs 200 (247)
T TIGR00972 193 KYTIVIVT 200 (247)
T ss_pred cCeEEEEe
Confidence 24666665
No 306
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=23.49 E-value=3.2e+02 Score=21.10 Aligned_cols=56 Identities=13% Similarity=0.014 Sum_probs=32.6
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-+++..+++..++++++=|.. .|.+... .+..+.+++.+ ++..+|+++
T Consensus 137 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~-~l~~~l~~~~~-~~~tiii~s 194 (214)
T PRK13543 137 QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGIT-LVNRMISAHLR-GGGAALVTT 194 (214)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH-HHHHHHHHHHh-CCCEEEEEe
Confidence 34444445577888888999999996654 4443322 23333434433 345666665
No 307
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=23.47 E-value=2.2e+02 Score=18.57 Aligned_cols=31 Identities=3% Similarity=0.141 Sum_probs=25.1
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCeEEE
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVSFFA 40 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~v~i 40 (153)
.+.+..+++.+.+++.+.+.|+..+|.++.+
T Consensus 72 ~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gv 102 (111)
T cd04590 72 STPLDDLLEEMRKERSHMAIVVDEYGGTAGL 102 (111)
T ss_pred CCcHHHHHHHHHhcCCcEEEEEECCCCEEEE
Confidence 4568899999999999999999877765433
No 308
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.43 E-value=2.9e+02 Score=21.87 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=31.7
Q ss_pred CCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 45 GGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 45 GR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
|...=-+++..+++..++++++=|..-.+|.-. +.+..+.+++++ +..+|+++-
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh 206 (253)
T PRK14261 152 GGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTH 206 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEc
Confidence 333445778888999999999988644443221 223333444443 356666663
No 309
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=23.06 E-value=2.6e+02 Score=23.63 Aligned_cols=82 Identities=9% Similarity=0.120 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCcEEE-EEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcC
Q psy5985 13 LPQIAAKLKELKIQALL-IIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEG 90 (153)
Q Consensus 13 ~~~~~~~L~~~~Id~Lv-vIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~ 90 (153)
.+++.+.|+..+++... .++ -+.-|.-|...=-++++-|++..+++++.=|..-.+|... +.+..+.+++++.
T Consensus 136 ~~~~~~~L~~vgL~~~~~~~~-----~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (330)
T PRK09473 136 FEESVRMLDAVKMPEARKRMK-----MYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE 210 (330)
T ss_pred HHHHHHHHHHcCCCChHHHhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 44566667776664210 000 2334556666667888999999999999988644333222 2222233344443
Q ss_pred CCeEEEEEe
Q psy5985 91 VQRGLILRN 99 (153)
Q Consensus 91 ~~~~iIvva 99 (153)
.+..+|+++
T Consensus 211 ~g~til~iT 219 (330)
T PRK09473 211 FNTAIIMIT 219 (330)
T ss_pred cCCEEEEEE
Confidence 344555555
No 310
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=23.04 E-value=2.7e+02 Score=23.68 Aligned_cols=32 Identities=16% Similarity=0.092 Sum_probs=22.6
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCH
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSI 73 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~ 73 (153)
+.-|...=-+++..+++..|+++++=|..-.+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 33444444678899999999999997764333
No 311
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=22.96 E-value=1.1e+02 Score=23.67 Aligned_cols=16 Identities=25% Similarity=0.129 Sum_probs=12.4
Q ss_pred HHhhcCCCEEEEcCCC
Q psy5985 55 AGLAGGADAAYIYEEK 70 (153)
Q Consensus 55 aglA~gad~iliPE~~ 70 (153)
.|.+.|+|+++.||..
T Consensus 26 ~a~~~g~dlvvfPE~~ 41 (253)
T cd07197 26 EAAEQGADLIVLPELF 41 (253)
T ss_pred HHHHCCCCEEEcCCcc
Confidence 3445799999999963
No 312
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=22.93 E-value=3.2e+02 Score=21.34 Aligned_cols=57 Identities=16% Similarity=0.003 Sum_probs=32.6
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=.+++..+++..|+++++=|..-.+|.-. +.+..+.+.+.+ ++..+|+++
T Consensus 142 ~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~s 199 (224)
T cd03220 142 TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK-QGKTVILVS 199 (224)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 344444455788888999999999987644333221 122222223333 245677776
No 313
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.93 E-value=3.1e+02 Score=22.13 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=32.5
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-+++..+++..++++++=|.. .|.+.- +.+..+.+++.+ ++..+|+++
T Consensus 136 ~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~-~~l~~~l~~~~~-~g~tii~vt 193 (271)
T PRK13638 136 CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR-TQMIAIIRRIVA-QGNHVIISS 193 (271)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH-HHHHHHHHHHHH-CCCEEEEEe
Confidence 33444444578889999999999997764 443332 222233334443 344566665
No 314
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=22.87 E-value=1.3e+02 Score=22.14 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=22.5
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCC
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEV 36 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs 36 (153)
..+.+++++.+.+++.+-++++|+-|.
T Consensus 70 ~TD~e~Al~~~~~~~~~~i~v~Ga~Gg 96 (123)
T PF04263_consen 70 YTDLEKALEYAIEQGPDEIIVLGALGG 96 (123)
T ss_dssp S-HHHHHHHHHHHTTTSEEEEES-SSS
T ss_pred cCHHHHHHHHHHHCCCCEEEEEecCCC
Confidence 457999999999999999999999883
No 315
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=22.85 E-value=2.7e+02 Score=23.46 Aligned_cols=82 Identities=10% Similarity=0.116 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCcEEE-EEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcC
Q psy5985 13 LPQIAAKLKELKIQALL-IIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEG 90 (153)
Q Consensus 13 ~~~~~~~L~~~~Id~Lv-vIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~ 90 (153)
.+++.+.|+..+++... .. + -+.-|.-|...=-++++.|++..+++++.=|..-.+|... ..+..+.+++++.
T Consensus 128 ~~~~~~~L~~~gL~~~~~~l---~--~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~ 202 (326)
T PRK11022 128 RQRAIDLLNQVGIPDPASRL---D--VYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK 202 (326)
T ss_pred HHHHHHHHHHCCCCChHHHH---h--CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 45566777777775210 00 0 2334555555556788899999999999988754443222 2222233344433
Q ss_pred CCeEEEEEe
Q psy5985 91 VQRGLILRN 99 (153)
Q Consensus 91 ~~~~iIvva 99 (153)
.+..+|+++
T Consensus 203 ~g~til~iT 211 (326)
T PRK11022 203 ENMALVLIT 211 (326)
T ss_pred cCCEEEEEe
Confidence 344555554
No 316
>PLN02448 UDP-glycosyltransferase family protein
Probab=22.79 E-value=2.6e+02 Score=24.84 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=47.6
Q ss_pred eecCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCC-Ce-------EEEEE--------------ecCCCcCHHHHHHHhhc
Q psy5985 2 LGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFE-VS-------FFALK--------------TMGGYCGYLATVAGLAG 59 (153)
Q Consensus 2 LgTsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdg-s~-------v~iVE--------------vMGR~aG~LA~~aglA~ 59 (153)
+||.-....+.++.+++.|++.+...|.++.++- .+ ..++. .+=.||||-.+.-|++.
T Consensus 281 fGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~ 360 (459)
T PLN02448 281 LGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFA 360 (459)
T ss_pred ecccccCCHHHHHHHHHHHHhCCCCEEEEEcCchhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHc
Confidence 3443222245688999999999999888876541 11 22222 12258999999999999
Q ss_pred CCCEEEEcC
Q psy5985 60 GADAAYIYE 68 (153)
Q Consensus 60 gad~iliPE 68 (153)
|.-++.+|-
T Consensus 361 GvP~l~~P~ 369 (459)
T PLN02448 361 GVPMLTFPL 369 (459)
T ss_pred CCCEEeccc
Confidence 999999994
No 317
>PRK05670 anthranilate synthase component II; Provisional
Probab=22.76 E-value=82 Score=24.23 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=15.0
Q ss_pred HHHcCCcEEEEEcCCCCe
Q psy5985 20 LKELKIQALLIIGGFEVS 37 (153)
Q Consensus 20 L~~~~Id~LvvIGGdgs~ 37 (153)
+++++.|+||+-||.|+.
T Consensus 39 ~~~~~~dglIlsgGpg~~ 56 (189)
T PRK05670 39 IEALNPDAIVLSPGPGTP 56 (189)
T ss_pred HHhCCCCEEEEcCCCCCh
Confidence 466678999999999985
No 318
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=22.69 E-value=3.2e+02 Score=21.32 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCC
Q psy5985 13 LPQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGV 91 (153)
Q Consensus 13 ~~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~ 91 (153)
.+++.+.|+..+++.+. + -.+-+.-|...=.+++..+++..|+++++=|..-.+|... +.+..+.+++.+ +
T Consensus 91 ~~~~~~~l~~~~l~~~~----~---~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~ 162 (223)
T TIGR03771 91 FAAVRDALRRVGLTELA----D---RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG-A 162 (223)
T ss_pred HHHHHHHHHHhCCchhh----c---CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-c
Confidence 34566677777775432 1 1223445555556788999999999999988644333222 222223334443 3
Q ss_pred CeEEEEEeC
Q psy5985 92 QRGLILRNE 100 (153)
Q Consensus 92 ~~~iIvvaE 100 (153)
+..+|+++-
T Consensus 163 ~~tvii~sH 171 (223)
T TIGR03771 163 GTAILMTTH 171 (223)
T ss_pred CCEEEEEeC
Confidence 556777763
No 319
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=22.68 E-value=2.9e+02 Score=23.49 Aligned_cols=63 Identities=17% Similarity=0.066 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe--------EEEEEecCCCcCH-HHHHHHhhcCCCEEEEcCCCCCHH
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS--------FFALKTMGGYCGY-LATVAGLAGGADAAYIYEEKFSIK 74 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~--------v~iVEvMGR~aG~-LA~~aglA~gad~iliPE~~~~~~ 74 (153)
.+...+.+.|++.+++...++.++.|+ .-+.=|+++..|. +|-+--=.-|..++..| .|+.++
T Consensus 158 ~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~~~~a~~L~e~~giP~~~~~-~p~G~~ 229 (398)
T PF00148_consen 158 GDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGGPYAAEWLEERFGIPYLYFP-SPYGIE 229 (398)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHHHHHHHHHHHHHT-EEEEEC--SBSHH
T ss_pred ccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchhhHHHHHHHHHhCCCeeecc-ccccHH
Confidence 468889999999999999999999998 2233345666554 44333333477888755 455443
No 320
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=22.50 E-value=3.7e+02 Score=22.33 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=40.8
Q ss_pred EEEecCCCc--CHHHHHHHhhcCCCE-EEEcCCCC---CHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCcCh
Q psy5985 40 ALKTMGGYC--GYLATVAGLAGGADA-AYIYEEKF---SIKDLQQDLYHMASKMAEGVQRGLILRNEKCNDNYNT 108 (153)
Q Consensus 40 iVEvMGR~a--G~LA~~aglA~gad~-iliPE~~~---~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG~~~~~~~ 108 (153)
.+=+||-.. .--++.-+||-|||- +++....+ |.-.....+... +++ .++-+|+..+...+.+++
T Consensus 58 tvvs~Gp~~a~~~~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~a---i~~-~~~DLVl~G~~s~D~~tg 128 (256)
T PRK03359 58 TALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAA---AQK-AGFDLILCGDGSSDLYAQ 128 (256)
T ss_pred EEEEECCcchhhHHHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHH---HHH-hCCCEEEEcCccccCCCC
Confidence 455889876 447899999999995 55543333 222222333222 222 357899999998876554
No 321
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=22.42 E-value=3e+02 Score=22.05 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhh------cCCCEEEEcCCCCCHHHHH-HHHHHHHHHH
Q psy5985 15 QIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLA------GGADAAYIYEEKFSIKDLQ-QDLYHMASKM 87 (153)
Q Consensus 15 ~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA------~gad~iliPE~~~~~~~l~-~~i~~i~~~~ 87 (153)
++.+.|+..+++.+. + -.+-+.-|...=-+++..+++ ..|+++++=|..-.+|... +.+..+.+++
T Consensus 114 ~~~~~l~~~~l~~~~-----~--~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 186 (258)
T PRK13548 114 LVAAALAQVDLAHLA-----G--RDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL 186 (258)
T ss_pred HHHHHHHHcCCHhHh-----c--CCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 344556666654311 0 123344555555678888898 5899999977643333222 2222233344
Q ss_pred HcCCCeEEEEEe
Q psy5985 88 AEGVQRGLILRN 99 (153)
Q Consensus 88 ~~~~~~~iIvva 99 (153)
.+.++..+|+++
T Consensus 187 ~~~~~~tiii~s 198 (258)
T PRK13548 187 AHERGLAVIVVL 198 (258)
T ss_pred HHhcCCEEEEEE
Confidence 322344566665
No 322
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=22.40 E-value=3.6e+02 Score=20.59 Aligned_cols=78 Identities=10% Similarity=0.054 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGV 91 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~ 91 (153)
+++.+.++..+++.+. . -.+-+.-|...=.+++..+++..++++++=|.. +|.... +.+..+.+++.+ .
T Consensus 104 ~~~~~~l~~~~l~~~~-----~--~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~-~~l~~~l~~~~~-~ 174 (201)
T cd03231 104 EQVEEALARVGLNGFE-----D--RPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV-ARFAEAMAGHCA-R 174 (201)
T ss_pred HHHHHHHHHcCChhhh-----c--CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHh-C
Confidence 3445556666665321 1 112234444555688888999999999997754 444332 233333333433 3
Q ss_pred CeEEEEEeC
Q psy5985 92 QRGLILRNE 100 (153)
Q Consensus 92 ~~~iIvvaE 100 (153)
+..+|+++-
T Consensus 175 g~tiii~sH 183 (201)
T cd03231 175 GGMVVLTTH 183 (201)
T ss_pred CCEEEEEec
Confidence 456777763
No 323
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.39 E-value=2.8e+02 Score=21.41 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 50 YLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 50 ~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
-+++..+++..|+++++=|..-.+|.-. +.+..+.+++. ++..+|+++
T Consensus 147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~s 195 (229)
T cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM--KGRTSIIIA 195 (229)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEe
Confidence 4677888999999999988643333222 22223333443 245677766
No 324
>PRK10565 putative carbohydrate kinase; Provisional
Probab=22.36 E-value=1.2e+02 Score=27.67 Aligned_cols=38 Identities=29% Similarity=0.232 Sum_probs=28.6
Q ss_pred HHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEE
Q psy5985 21 KELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYI 66 (153)
Q Consensus 21 ~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~ili 66 (153)
.|..--.+.+|||...| .-|.+||..+|+.+||+++.+
T Consensus 250 hKg~~G~vliigGs~~~--------~GA~~Laa~aAlr~GaGlv~~ 287 (508)
T PRK10565 250 HKGDHGRLLIIGGDHGT--------AGAIRMAGEAALRSGAGLVRV 287 (508)
T ss_pred CCCCCCeEEEEECCCCC--------ccHHHHHHHHHHHhCCCeEEE
Confidence 45556679999997644 236689999999999998654
No 325
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.29 E-value=3.6e+02 Score=20.71 Aligned_cols=51 Identities=8% Similarity=0.064 Sum_probs=28.4
Q ss_pred CHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 49 GYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 49 G~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
=-+++..+++..|+++++=|..-.+|... +.+..+.+++.+..+..+|+++
T Consensus 125 qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~ 176 (202)
T cd03233 125 KRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSL 176 (202)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 34678888889999999977644443322 2233333344332234444443
No 326
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=22.27 E-value=3.5e+02 Score=20.47 Aligned_cols=57 Identities=16% Similarity=0.094 Sum_probs=33.7
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
+.-|...=.+++..+++..|+++++=|.. +|.+. .+.+..+.+... .++..+|+++-
T Consensus 123 ~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~-~~~l~~~l~~~~-~~~~tiii~sh 181 (195)
T PRK13541 123 SLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN-RDLLNNLIVMKA-NSGGIVLLSSH 181 (195)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH-HHHHHHHHHHHH-hCCCEEEEEeC
Confidence 34455556788899999999999997763 44433 223322332222 23456666663
No 327
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.25 E-value=4.9e+02 Score=22.84 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=46.3
Q ss_pred cHHHHHHHHHH-cCCcEEEEEcCCCCe-------------E---EEEEecCCCcCHHHHHHHhh---cC--CCEEEEcCC
Q psy5985 12 KLPQIAAKLKE-LKIQALLIIGGFEVS-------------F---FALKTMGGYCGYLATVAGLA---GG--ADAAYIYEE 69 (153)
Q Consensus 12 ~~~~~~~~L~~-~~Id~LvvIGGdgs~-------------v---~iVEvMGR~aG~LA~~aglA---~g--ad~iliPE~ 69 (153)
-+++.++.+.. .+++-+++|-+..=. . +++|=+|||..---..+++. .. |-++++|-.
T Consensus 36 llq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsD 115 (333)
T COG0836 36 LLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAGIILEPEGRNTAPAIALAALSATAEGGDALVLVLPSD 115 (333)
T ss_pred HHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccceEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 46777777776 567788887766532 3 99999999975433333332 22 347778876
Q ss_pred CC--CHHHHHHHHHHHH
Q psy5985 70 KF--SIKDLQQDLYHMA 84 (153)
Q Consensus 70 ~~--~~~~l~~~i~~i~ 84 (153)
.. |.+.+.+.+++-.
T Consensus 116 H~I~d~~af~~av~~A~ 132 (333)
T COG0836 116 HVIADEEAFLNAVKKAE 132 (333)
T ss_pred ceeccHHHHHHHHHHHH
Confidence 43 4456777776544
No 328
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.22 E-value=95 Score=21.78 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHHcCC-cEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEc
Q psy5985 11 KKLPQIAAKLKELKI-QALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIY 67 (153)
Q Consensus 11 e~~~~~~~~L~~~~I-d~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliP 67 (153)
....+.++.+++.+- +..+++||...- ... ....+.|+|.++-|
T Consensus 65 ~~~~~~i~~l~~~~~~~~~i~vGG~~~~---------~~~----~~~~~~G~D~~~~~ 109 (119)
T cd02067 65 TLMKEVIEELKEAGLDDIPVLVGGAIVT---------RDF----KFLKEIGVDAYFGP 109 (119)
T ss_pred HHHHHHHHHHHHcCCCCCeEEEECCCCC---------hhH----HHHHHcCCeEEECC
Confidence 456788888999887 788899987632 001 23455678887743
No 329
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=22.19 E-value=1.3e+02 Score=25.05 Aligned_cols=46 Identities=7% Similarity=0.002 Sum_probs=29.1
Q ss_pred HhhcCCCEEEEcCCCC---CH-HHHHHHHHHHHHHHHcCCCeEEEEEeCC
Q psy5985 56 GLAGGADAAYIYEEKF---SI-KDLQQDLYHMASKMAEGVQRGLILRNEK 101 (153)
Q Consensus 56 glA~gad~iliPE~~~---~~-~~l~~~i~~i~~~~~~~~~~~iIvvaEG 101 (153)
++++-+-.+++||.+= .. +...+.++++.+++++-+...|||+|=-
T Consensus 8 ~~~~H~P~i~i~e~~g~~~~~~~~~~~al~~l~~~l~~~~Pd~IVViS~H 57 (282)
T TIGR02298 8 AKITHVPSMYLSELPGPLRGCRQGAIDGHKEISRRAKEMGVDTIVVFDTH 57 (282)
T ss_pred EEeccCCcEEECCCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4555666788899742 22 3455666667777775556678877744
No 330
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=22.13 E-value=2.5e+02 Score=19.09 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=25.9
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCeEEEE
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVSFFAL 41 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~v~iV 41 (153)
.....++++.+.+++++.+.|+-.++.++.+|
T Consensus 87 ~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gii 118 (126)
T cd04642 87 SSTLKEVITKLVANKVHRVWVVDEEGKPIGVI 118 (126)
T ss_pred CCcHHHHHHHHHHhCCcEEEEECCCCCEEEEE
Confidence 45688999999999999999998777664443
No 331
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.11 E-value=3.2e+02 Score=22.34 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=33.1
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-+++..+++..++++++=|..-.+|... +.+..+.+++.+ ++..+|+++
T Consensus 145 ~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivs 202 (287)
T PRK13641 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVT 202 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 333444445788999999999999988754443222 233333444433 345555554
No 332
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.10 E-value=3.4e+02 Score=21.37 Aligned_cols=48 Identities=8% Similarity=0.187 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 50 YLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 50 ~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvva 99 (153)
.+++..+++..++++++=|..-.+|.- .+.+..+.+++.+ +..+|+++
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~s 201 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVT 201 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEe
Confidence 477888899999999997764444322 2233334444543 35666665
No 333
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.09 E-value=5.4e+02 Score=22.57 Aligned_cols=61 Identities=13% Similarity=-0.048 Sum_probs=38.6
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe---------EEEEEecCCCcC-HHHHHHHhhcCCCEEEEcCCCCCH
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS---------FFALKTMGGYCG-YLATVAGLAGGADAAYIYEEKFSI 73 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~---------v~iVEvMGR~aG-~LA~~aglA~gad~iliPE~~~~~ 73 (153)
..+...+.+.|++.+|+...++.|+.|+ .+-+ +++...+ ++|-+--=.-|..++..| |+-+
T Consensus 184 ~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lni-v~~~~~~~~~a~~Le~~fGiP~~~~~--p~Gi 254 (421)
T cd01976 184 GGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNL-IHCYRSMNYIARMMEEKYGIPWMEYN--FFGP 254 (421)
T ss_pred CccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEE-EECcHHHHHHHHHHHHHhCCcEEecc--cCCH
Confidence 3467788899999999999999999887 2222 2333322 333222222477777776 5544
No 334
>PLN02764 glycosyltransferase family protein
Probab=22.06 E-value=2.6e+02 Score=25.13 Aligned_cols=67 Identities=10% Similarity=0.169 Sum_probs=47.6
Q ss_pred eecCCCCCCCcHHHHHHHHHHcCCcEEEEEcC---CCC----e------------EEE--------------EEecCCCc
Q psy5985 2 LGTKRTLPEKKLPQIAAKLKELKIQALLIIGG---FEV----S------------FFA--------------LKTMGGYC 48 (153)
Q Consensus 2 LgTsR~~~~e~~~~~~~~L~~~~Id~LvvIGG---dgs----~------------v~i--------------VEvMGR~a 48 (153)
+||-.....+++.+++..|+..+...|.|+-- .+. + +.+ |-.+=-||
T Consensus 264 fGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~ 343 (453)
T PLN02764 264 LGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHC 343 (453)
T ss_pred ecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecC
Confidence 45544444567889999999999999999972 111 1 011 11122589
Q ss_pred CHHHHHHHhhcCCCEEEEcC
Q psy5985 49 GYLATVAGLAGGADAAYIYE 68 (153)
Q Consensus 49 G~LA~~aglA~gad~iliPE 68 (153)
||-.+.-++..|.-++.+|=
T Consensus 344 G~nS~~Eal~~GVP~l~~P~ 363 (453)
T PLN02764 344 GFGSMWESLLSDCQIVLVPQ 363 (453)
T ss_pred CchHHHHHHHcCCCEEeCCc
Confidence 99999999999999999885
No 335
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=21.88 E-value=2.7e+02 Score=24.50 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~ 92 (153)
+++.+.|+..+++.+. . -..-+.-|...=-+++..+++..|+++++=|..-.+|... +.+..+.+++.+..+
T Consensus 143 ~~~~e~L~~~gL~~~~-----~--~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g 215 (400)
T PRK10070 143 EKALDALRQVGLENYA-----H--SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215 (400)
T ss_pred HHHHHHHHHcCCChhh-----h--cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCC
Confidence 4556667777775321 1 2234556666667889999999999999977643333322 223333334432223
Q ss_pred eEEEEEe
Q psy5985 93 RGLILRN 99 (153)
Q Consensus 93 ~~iIvva 99 (153)
..+|+++
T Consensus 216 ~TIIivT 222 (400)
T PRK10070 216 RTIVFIS 222 (400)
T ss_pred CeEEEEE
Confidence 3445444
No 336
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=21.87 E-value=64 Score=27.13 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=23.1
Q ss_pred eecCCCCC-CCcHHHHHHHHHHcCCcEEEEEcCC
Q psy5985 2 LGTKRTLP-EKKLPQIAAKLKELKIQALLIIGGF 34 (153)
Q Consensus 2 LgTsR~~~-~e~~~~~~~~L~~~~Id~LvvIGGd 34 (153)
|-+|+... .+.+++.++...+.++|+++++|-=
T Consensus 9 lA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~ 42 (255)
T PF14582_consen 9 LAISNFRGDFELLERLVEVIPEKGPDAVVFVGDL 42 (255)
T ss_dssp EEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-S
T ss_pred eeecCcchHHHHHHHHHhhccccCCCEEEEeccc
Confidence 44555554 4568899999999999999999853
No 337
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=21.84 E-value=3.4e+02 Score=21.56 Aligned_cols=31 Identities=16% Similarity=0.030 Sum_probs=22.3
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCCCCH
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSI 73 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~~~~ 73 (153)
.-|...=-+++..+++..++++++=|..-.+
T Consensus 139 LS~G~~qrv~laral~~~p~llllDEP~~~L 169 (255)
T PRK11231 139 LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYL 169 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 3344444578889999999999998874444
No 338
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.83 E-value=3.4e+02 Score=21.40 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~ 92 (153)
+++.+.|+..+++..+- ..-+ -.+-+.-|...=-+++..+++..++++++=|..-.+|.. .+.+..+.+++.+ +
T Consensus 121 ~~~~~~l~~~~l~~~~~-~~~~--~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~ 195 (250)
T PRK14247 121 ERVRWALEKAQLWDEVK-DRLD--APAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--D 195 (250)
T ss_pred HHHHHHHHHcCCCcchh-hhhc--CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C
Confidence 34556677776643110 0001 123344555555688899999999999997764333322 1222223334433 4
Q ss_pred eEEEEEeC
Q psy5985 93 RGLILRNE 100 (153)
Q Consensus 93 ~~iIvvaE 100 (153)
..+|+++-
T Consensus 196 ~tiii~sH 203 (250)
T PRK14247 196 MTIVLVTH 203 (250)
T ss_pred CEEEEEeC
Confidence 56777664
No 339
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.81 E-value=3.4e+02 Score=21.37 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=33.4
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-+++..+++..++++++=|..-.+|.- .+.+..+.+++.+ +..+|+++
T Consensus 147 ~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiis 203 (251)
T PRK14251 147 AFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVT 203 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 44444555688889999999999997764333322 2223333334443 35666666
No 340
>KOG3857|consensus
Probab=21.80 E-value=1.1e+02 Score=27.52 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=23.9
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
...+.++++..|+.+.|+++.|||--++
T Consensus 113 v~s~~~alefak~~~fDs~vaiGGGSa~ 140 (465)
T KOG3857|consen 113 VGSVTAALEFAKKKNFDSFVAIGGGSAH 140 (465)
T ss_pred hhhHHHHHHHHHhcccceEEEEcCcchh
Confidence 3458899999999999999999996544
No 341
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=21.70 E-value=1.3e+02 Score=21.49 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=25.2
Q ss_pred CHHHHHHHhhcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHcCCC
Q psy5985 49 GYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQ 92 (153)
Q Consensus 49 G~LA~~aglA~gad~iliPE~~~~~~~l~~~i~~i~~~~~~~~~ 92 (153)
|-||+-+||+ |..++-++|...++.+..||+++..
T Consensus 30 gr~AlKaGL~---------eieI~d~eL~~~FeeIa~RFrk~~~ 64 (92)
T PF07820_consen 30 GRIALKAGLG---------EIEISDAELQAAFEEIAARFRKGKK 64 (92)
T ss_pred HHHHHHcccc---------cccCCHHHHHHHHHHHHHHHhcccc
Confidence 4566666653 6667778888888888889987643
No 342
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=21.68 E-value=3.4e+02 Score=21.38 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=33.2
Q ss_pred cCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 44 MGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 44 MGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
-|...=-+++..+++..|+++++=|..-.+|... +.+..+.+++.+ +..+|+++-
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH 203 (250)
T PRK14240 148 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DYTIVIVTH 203 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEEe
Confidence 3444446788899999999999988754443322 223333444443 356777764
No 343
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.65 E-value=3.4e+02 Score=21.36 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=29.7
Q ss_pred cCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 48 CGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 48 aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvva 99 (153)
.=-+++..+++..++++++=|..-.+|.. .+.+..+.+++++ +..+|+++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiii~s 202 (250)
T PRK14266 152 QQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE--DYTIVIVT 202 (250)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEE
Confidence 33477888899999999998864433322 2223333334432 45666666
No 344
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=21.54 E-value=2.6e+02 Score=24.06 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHH
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIK 74 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~ 74 (153)
+++.+.|+..+++.+. + -.+-+.-|...=-+|++.+|+..++++++=|.--.+|
T Consensus 112 ~~~~~~l~~lgL~~~~-----~--~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD 165 (369)
T PRK11000 112 QRVNQVAEVLQLAHLL-----D--RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165 (369)
T ss_pred HHHHHHHHHcCChhhh-----c--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 4556667777765331 0 1122444555556889999999999999988644443
No 345
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=21.54 E-value=3.2e+02 Score=22.03 Aligned_cols=56 Identities=9% Similarity=0.164 Sum_probs=34.1
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-+++..+++..++++++-|..-.+|.. .+.+..+.+++.+ +..+|+++
T Consensus 168 ~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivt 224 (272)
T PRK14236 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVT 224 (272)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEe
Confidence 44455555678899999999999998874433322 2223333434443 34666665
No 346
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=21.54 E-value=3.9e+02 Score=22.67 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=20.6
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+.++..+.|..++ |.|+|.|.++..
T Consensus 18 ~~~~~lr~~L~~~G-dSlvVv~~~~~~ 43 (313)
T PF13684_consen 18 FDAEELRARLEELG-DSLVVVGDDDLV 43 (313)
T ss_pred CCHHHHHHHHHhcC-CEEEEEecCCeE
Confidence 46778888888886 688888888876
No 347
>KOG0173|consensus
Probab=21.50 E-value=1.9e+02 Score=24.55 Aligned_cols=56 Identities=29% Similarity=0.413 Sum_probs=36.7
Q ss_pred eecCCCCC-CCcHHHHHHHHHHc--CCcEEEEEcCCCCe--------------EEEEEecCCCcCHHHHHHHhhc
Q psy5985 2 LGTKRTLP-EKKLPQIAAKLKEL--KIQALLIIGGFEVS--------------FFALKTMGGYCGYLATVAGLAG 59 (153)
Q Consensus 2 LgTsR~~~-~e~~~~~~~~L~~~--~Id~LvvIGGdgs~--------------v~iVEvMGR~aG~LA~~aglA~ 59 (153)
|-|.|.++ --..+.+.+.|=+| +|++-++|||-+.- .+-.=.|| +|.+|+++-|-+
T Consensus 105 l~t~R~~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alG--SGslaAmsvlEs 177 (271)
T KOG0173|consen 105 LNTGRKPRVVTALRMLKQHLFRYQGHIGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALG--SGSLAAMSVLES 177 (271)
T ss_pred hccCCCCceeeHHHHHHHHHHHhcCcccceeEEccccCCCCceEEEcCCCCcCccceeeec--cchHHHHHHHHH
Confidence 44667665 33344444555544 69999999998875 33334566 799999988764
No 348
>PF02457 DisA_N: DisA bacterial checkpoint controller nucleotide-binding; InterPro: IPR003390 The DisA protein is a bacterial checkpoint protein that dimerises into an octameric complex. The protein consists of three distinct domains. This domain is the first and is a globular, nucleotide-binding region; the next 146-289 residues constitute the DisA-linker family, IPR018906 from INTERPRO that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), which thus forms a spine like-linker between domains 1 and 3. The C-terminal residues, of domain 3, are represented by family HHH, IPR000445 from INTERPRO the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branched DNA, but not to duplex or single-stranded DNA, suggesting a role for DisA as a monitor of the presence of stalled replication forks or recombination intermediates via DNA structure-modulated c-di-AMP synthesis.; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 2FB5_A.
Probab=21.45 E-value=1.3e+02 Score=22.24 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
..+++++.+.++.+|+||+-+..+
T Consensus 2 ~~a~~~l~~~~~GaLiVi~~~~~l 25 (122)
T PF02457_consen 2 REAVERLSKQRIGALIVIEDDDDL 25 (122)
T ss_dssp HHHHHHHHHCT--EEEEES-CCGG
T ss_pred HHHHHHHhcCCeEEEEEEeCCcCH
Confidence 468899999999999999988876
No 349
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=21.45 E-value=86 Score=26.65 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=23.1
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
.+...++++.+++.+.|.+|-|||--.+
T Consensus 63 ~~~v~~~~~~~~~~~~d~IIavGGGs~~ 90 (349)
T cd08550 63 TEEVVKALCGAEEQEADVIIGVGGGKTL 90 (349)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCcHHH
Confidence 3467889999999999999999985444
No 350
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.42 E-value=3.5e+02 Score=21.34 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=34.3
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
+.-|...=-+++..+++..|+++++=|.. +|.+.. +.+..+.+++.+ +..+|+++-
T Consensus 142 ~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~-~~l~~~l~~~~~--~~tiii~tH 199 (246)
T PRK14269 142 ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISS-GVIEELLKELSH--NLSMIMVTH 199 (246)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH-HHHHHHHHHHhC--CCEEEEEec
Confidence 34455555688999999999999998864 443332 222223334433 456667663
No 351
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.42 E-value=3.4e+02 Score=21.39 Aligned_cols=56 Identities=9% Similarity=0.163 Sum_probs=33.0
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-+++..+++..++++++=|..-.+|... +.+..+.+++.+ +..+|+++
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivt 202 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK--DYTIVIVT 202 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEe
Confidence 344445556788889999999999988644333222 222223334433 35666666
No 352
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=21.40 E-value=3.7e+02 Score=20.60 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~ 92 (153)
+++.+.++..+++... + -.+-+.-|...=-+++..+++..|+++++=|..-.+|.- .+.+..+.+++.+ +
T Consensus 112 ~~~~~~l~~~~l~~~~-----~--~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~ 182 (220)
T cd03263 112 EEVELLLRVLGLTDKA-----N--KRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G 182 (220)
T ss_pred HHHHHHHHHcCCHHHH-----h--ChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C
Confidence 3455566666654221 1 112233344444578888899999999998874444322 2222233334443 3
Q ss_pred eEEEEEe
Q psy5985 93 RGLILRN 99 (153)
Q Consensus 93 ~~iIvva 99 (153)
..+|+++
T Consensus 183 ~tii~~s 189 (220)
T cd03263 183 RSIILTT 189 (220)
T ss_pred CEEEEEc
Confidence 5566665
No 353
>PF11545 HemeBinding_Shp: Cell surface heme-binding protein Shp; InterPro: IPR020985 Shp is a cell-surface protein which forms part of a complex responsible for haem uptake in Streptococcus pyogenes. During haem uptake Shp transfers a bound haem to HtsA, the lipoprotein component of an ABC transporter. This entry represents the haem-binding domain of Shp. It contains an immunoglobulin-like beta-sandwich fold and has a unique haem-iron coordination, with the axial ligands being two methionine residues from the same Shp molecule []. Surrounding the haem pocket, there is a negative surface which may serve as a docking interface for haem transfer. ; PDB: 2Q7A_B.
Probab=21.38 E-value=29 Score=27.00 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=10.1
Q ss_pred EEEEEecCCCcC
Q psy5985 38 FFALKTMGGYCG 49 (153)
Q Consensus 38 v~iVEvMGR~aG 49 (153)
.|.||-|||+-=
T Consensus 119 s~yVePMGRdVi 130 (152)
T PF11545_consen 119 SMYVEPMGRDVI 130 (152)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEEcCCCCcEE
Confidence 899999999743
No 354
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=21.36 E-value=4.6e+02 Score=21.46 Aligned_cols=101 Identities=20% Similarity=0.110 Sum_probs=55.5
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe----------------------E-EEEEecCCCcCH---HHHHHHhhcCCCE
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS----------------------F-FALKTMGGYCGY---LATVAGLAGGADA 63 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~----------------------v-~iVEvMGR~aG~---LA~~aglA~gad~ 63 (153)
.+.+++.++.+-+.++|++++.|--|=+ + .++=|..-+.-. +| ..+-..|||.
T Consensus 18 ~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a-~~a~~~Gad~ 96 (285)
T TIGR00674 18 FAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLT-KFAEDVGADG 96 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHH-HHHHHcCCCE
Confidence 3468888899999999999998876655 2 222232221111 11 1122358997
Q ss_pred EEE-cCC--CCCHHHHHHHHHHHHHHHHcCCCeEEEEEeCC--CCCCcChHHHHHHH
Q psy5985 64 AYI-YEE--KFSIKDLQQDLYHMASKMAEGVQRGLILRNEK--CNDNYNTDFIYRLY 115 (153)
Q Consensus 64 ili-PE~--~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG--~~~~~~~~~l~~~~ 115 (153)
+++ |.. +.+-+.+.+..+.+.+. -+--|++-.-- .+...+.+.+.++.
T Consensus 97 v~v~pP~y~~~~~~~i~~~~~~i~~~----~~~pi~lYn~P~~tg~~l~~~~l~~L~ 149 (285)
T TIGR00674 97 FLVVTPYYNKPTQEGLYQHFKAIAEE----VDLPIILYNVPSRTGVSLYPETVKRLA 149 (285)
T ss_pred EEEcCCcCCCCCHHHHHHHHHHHHhc----CCCCEEEEECcHHhcCCCCHHHHHHHH
Confidence 554 443 34557777766655432 23345554421 12334556666664
No 355
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=21.32 E-value=1.6e+02 Score=23.58 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=17.1
Q ss_pred EEEEEecCCCcCHHHHHHHh
Q psy5985 38 FFALKTMGGYCGYLATVAGL 57 (153)
Q Consensus 38 v~iVEvMGR~aG~LA~~agl 57 (153)
..++|+=|..-|+|+.....
T Consensus 121 p~i~~~~g~kia~l~~t~~~ 140 (250)
T PF09587_consen 121 PAIIEVNGVKIAFLGYTDGE 140 (250)
T ss_pred eEEEEECCEEEEEEEEEcCC
Confidence 89999999999999876655
No 356
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=21.29 E-value=1.3e+02 Score=24.15 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=24.7
Q ss_pred CCcHHHHHHHHHHcCCcEEEEE---cCCCCe
Q psy5985 10 EKKLPQIAAKLKELKIQALLII---GGFEVS 37 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvI---GGdgs~ 37 (153)
++++......+++|||++-++= +|+|.+
T Consensus 41 ~~~lk~F~k~AkKyGV~yav~kdk~~~~~~~ 71 (204)
T PF12687_consen 41 DEDLKEFKKEAKKYGVDYAVKKDKSTGPGKY 71 (204)
T ss_pred HhhHHHHHHHHHHcCCceEEeeccCCCCCcE
Confidence 4678888899999999999999 999966
No 357
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=21.28 E-value=3.7e+02 Score=20.35 Aligned_cols=49 Identities=12% Similarity=-0.047 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 50 YLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 50 ~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
-+++..+++..|+++++=|.. .|.+.. +.+..+.+++.+ .+..+|+++-
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~-~~l~~~l~~~~~-~~~tii~~sH 185 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGV-ALLAGLLRAHLA-RGGIVLLTTH 185 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHH-HHHHHHHHHHHh-CCCEEEEEEc
Confidence 467788888999999997764 444332 223223333332 3446666653
No 358
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=21.20 E-value=88 Score=25.86 Aligned_cols=101 Identities=11% Similarity=0.030 Sum_probs=56.3
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCCe-------------EE------EEEecCCCcCHHHH---HHHhhcCCCEEEE-
Q psy5985 10 EKKLPQIAAKLKELKIQALLIIGGFEVS-------------FF------ALKTMGGYCGYLAT---VAGLAGGADAAYI- 66 (153)
Q Consensus 10 ~e~~~~~~~~L~~~~Id~LvvIGGdgs~-------------v~------iVEvMGR~aG~LA~---~aglA~gad~ili- 66 (153)
.+.+++.++.+.+.++|+|++.|.-|=+ .. |+=-.|..+=.-|. ..+-..|||.+++
T Consensus 19 ~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~ 98 (279)
T cd00953 19 KEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVGSLNLEESIELARAAKSFGIYAIASL 98 (279)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3568889999999999999999988876 00 11111211111111 1122259999876
Q ss_pred cCC--C-CCHHHHHHHHHHHHHHHHcCCCeEEEEEeCC--CCCCcChHHHHHHHH
Q psy5985 67 YEE--K-FSIKDLQQDLYHMASKMAEGVQRGLILRNEK--CNDNYNTDFIYRLYS 116 (153)
Q Consensus 67 PE~--~-~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG--~~~~~~~~~l~~~~~ 116 (153)
|.. + .+-+.+.+..+.+. + .--+++-.-= .+...+.+.+.++.+
T Consensus 99 ~P~y~~~~~~~~i~~yf~~v~----~--~lpv~iYn~P~~tg~~l~~~~l~~L~~ 147 (279)
T cd00953 99 PPYYFPGIPEEWLIKYFTDIS----S--PYPTFIYNYPKATGYDINARMAKEIKK 147 (279)
T ss_pred CCcCCCCCCHHHHHHHHHHHH----h--cCCEEEEeCccccCCCCCHHHHHHHHh
Confidence 443 2 34567777665543 2 3345555321 122345667777653
No 359
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=21.17 E-value=3.6e+02 Score=21.44 Aligned_cols=78 Identities=12% Similarity=0.161 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGV 91 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~ 91 (153)
+++.+.++..+++.+.. + -.+-+.-|...=.+++..+++..|+++++=|.. +|.+.... +..+.+++.+ +
T Consensus 130 ~~~~~~l~~~gl~~~~~----~--~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~-l~~~l~~l~~-~ 201 (257)
T PRK10619 130 ERAVKYLAKVGIDERAQ----G--KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE-VLRIMQQLAE-E 201 (257)
T ss_pred HHHHHHHHHcCCChhhh----h--CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHh-c
Confidence 34556677777754321 1 123355566666788999999999999997764 44433322 2223334443 3
Q ss_pred CeEEEEEe
Q psy5985 92 QRGLILRN 99 (153)
Q Consensus 92 ~~~iIvva 99 (153)
+..+|+++
T Consensus 202 g~tiiivs 209 (257)
T PRK10619 202 GKTMVVVT 209 (257)
T ss_pred CCEEEEEe
Confidence 55666666
No 360
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.16 E-value=3.6e+02 Score=21.23 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 50 YLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 50 ~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
-+++..+++..|+++++=|..-.+|... +.+..+.+++++ +..+|+++
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~s 204 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVT 204 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEe
Confidence 4788889999999999987644333222 222233334443 35666666
No 361
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.14 E-value=2.6e+02 Score=23.54 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=36.9
Q ss_pred cCCCcCHHHHHHHhhcCCCEEEEcCC-----CCCHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Q psy5985 44 MGGYCGYLATVAGLAGGADAAYIYEE-----KFSIKDLQQDLYHMASKMAEGVQRGLILRNEKC 102 (153)
Q Consensus 44 MGR~aG~LA~~aglA~gad~iliPE~-----~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG~ 102 (153)
-|...=-|..+=+||.-++++|.-|. |++-.++.+.+. .++ +++.||+|.=..
T Consensus 151 SGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~----eLk--~~yTIviVTHnm 208 (253)
T COG1117 151 SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELIT----ELK--KKYTIVIVTHNM 208 (253)
T ss_pred ChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHH----HHH--hccEEEEEeCCH
Confidence 35555567888899999999999886 444444444433 333 688999998553
No 362
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=21.13 E-value=4.4e+02 Score=22.18 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=19.4
Q ss_pred HHHhhcCCCEEEEcCCCCCHHHHHHHHH
Q psy5985 54 VAGLAGGADAAYIYEEKFSIKDLQQDLY 81 (153)
Q Consensus 54 ~aglA~gad~iliPE~~~~~~~l~~~i~ 81 (153)
.+..+.|||.+++|-.+.+.+++.+..+
T Consensus 176 ~ay~eAGAD~ifv~~~~~~~~ei~~~~~ 203 (285)
T TIGR02320 176 EAYAEAGADGIMIHSRKKDPDEILEFAR 203 (285)
T ss_pred HHHHHcCCCEEEecCCCCCHHHHHHHHH
Confidence 3344579999999855677777665444
No 363
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.97 E-value=93 Score=23.07 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHcCC-cEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHHHHHH
Q psy5985 11 KKLPQIAAKLKELKI-QALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLY 81 (153)
Q Consensus 11 e~~~~~~~~L~~~~I-d~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~~~i~ 81 (153)
+.++.+++.|++.+. +..+++||.=. -=-...-.+.|.|-++-|.. ++.++++.+.
T Consensus 68 ~~~~~~~~~L~~~g~~~i~vivGG~~~-------------~~~~~~l~~~Gvd~~~~~gt--~~~~i~~~l~ 124 (132)
T TIGR00640 68 TLVPALRKELDKLGRPDILVVVGGVIP-------------PQDFDELKEMGVAEIFGPGT--PIPESAIFLL 124 (132)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCC-------------hHhHHHHHHCCCCEEECCCC--CHHHHHHHHH
Confidence 468889999999888 56788887532 10122344579999999987 4566666654
No 364
>PLN02210 UDP-glucosyl transferase
Probab=20.86 E-value=2.5e+02 Score=25.02 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=48.2
Q ss_pred eecCCCCCCCcHHHHHHHHHHcCCcEEEEEcCCCC--e------------EEEEE--------------ecCCCcCHHHH
Q psy5985 2 LGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFEV--S------------FFALK--------------TMGGYCGYLAT 53 (153)
Q Consensus 2 LgTsR~~~~e~~~~~~~~L~~~~Id~LvvIGGdgs--~------------v~iVE--------------vMGR~aG~LA~ 53 (153)
+||-...+++.++.++..|+..+...|.+++.+.. . ..|+. .+=-||||-.+
T Consensus 276 fGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~ 355 (456)
T PLN02210 276 FGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNST 355 (456)
T ss_pred ecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccH
Confidence 35543333567899999999999999999974321 0 11222 33358999999
Q ss_pred HHHhhcCCCEEEEcC
Q psy5985 54 VAGLAGGADAAYIYE 68 (153)
Q Consensus 54 ~aglA~gad~iliPE 68 (153)
.-++..|.-++.+|=
T Consensus 356 ~Eai~~GVP~v~~P~ 370 (456)
T PLN02210 356 IETVVAGVPVVAYPS 370 (456)
T ss_pred HHHHHcCCCEEeccc
Confidence 999999999999884
No 365
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=20.79 E-value=4.7e+02 Score=21.84 Aligned_cols=95 Identities=20% Similarity=0.304 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCe-------EEEEEecCCCcCHHHH-------HHHhh-cCCCE-----EEEc--CCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVS-------FFALKTMGGYCGYLAT-------VAGLA-GGADA-----AYIY--EEKF 71 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~-------v~iVEvMGR~aG~LA~-------~aglA-~gad~-----iliP--E~~~ 71 (153)
.+.++.+.+.++.--+||||-..+ --+=|+.+-+-|-+|+ .++|- .|.+. +-.| -+|+
T Consensus 34 a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai~~~~~~e~~ 113 (238)
T COG0528 34 ANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLATVMNALALQDALERLGVDTRVQSAIAMPQVAEPY 113 (238)
T ss_pred HHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccccCccccCcc
Confidence 334455556678888999997766 2234445555566653 22222 13333 3345 4466
Q ss_pred CHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCC-cChHHHHHHHHhh
Q psy5985 72 SIKDLQQDLYHMASKMAEGVQRGLILRNEKCNDN-YNTDFIYRLYSEE 118 (153)
Q Consensus 72 ~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG~~~~-~~~~~l~~~~~~e 118 (153)
+..+..+. +.+ .-|+|.+=|...+ .+++..+.+..+|
T Consensus 114 ~~~~A~~~-------l~~---grVvIf~gGtg~P~fTTDt~AALrA~e 151 (238)
T COG0528 114 SRREAIRH-------LEK---GRVVIFGGGTGNPGFTTDTAAALRAEE 151 (238)
T ss_pred CHHHHHHH-------HHc---CCEEEEeCCCCCCCCchHHHHHHHHHH
Confidence 65554332 222 3488888877655 4677777766554
No 366
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.74 E-value=3.4e+02 Score=22.88 Aligned_cols=80 Identities=11% Similarity=0.080 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCc-EEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcC
Q psy5985 13 LPQIAAKLKELKIQ-ALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEG 90 (153)
Q Consensus 13 ~~~~~~~L~~~~Id-~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~ 90 (153)
.+++.+.++..+++ .+. + -..-+.-|...=-+|++.+++..|+++++=|..-.+|... +.+..+.+++.+
T Consensus 153 ~~~~~~~l~~~gL~~~~~-----~--~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~- 224 (320)
T PRK13631 153 KKLAKFYLNKMGLDDSYL-----E--RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA- 224 (320)
T ss_pred HHHHHHHHHHcCCChhHh-----c--CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-
Confidence 34556677777774 221 0 1123455555567889999999999999988744443222 222223333432
Q ss_pred CCeEEEEEeC
Q psy5985 91 VQRGLILRNE 100 (153)
Q Consensus 91 ~~~~iIvvaE 100 (153)
++..+|+++-
T Consensus 225 ~g~TiiivtH 234 (320)
T PRK13631 225 NNKTVFVITH 234 (320)
T ss_pred CCCEEEEEec
Confidence 3556666653
No 367
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=20.67 E-value=3.1e+02 Score=23.99 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCC
Q psy5985 14 PQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQ 92 (153)
Q Consensus 14 ~~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~ 92 (153)
+++.+.|+..+++.+. + -..-+.-|...=-+++.-+|+..|+++++=|..-.+|... +.+..+..++++..+
T Consensus 143 ~~a~e~le~vgL~~~~-----~--~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~ 215 (382)
T TIGR03415 143 KRVDEQLELVGLAQWA-----D--KKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLN 215 (382)
T ss_pred HHHHHHHHHcCCchhh-----c--CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 4556667777665331 1 1233555555666788899999999999988744443332 223333334443334
Q ss_pred eEEEEEe
Q psy5985 93 RGLILRN 99 (153)
Q Consensus 93 ~~iIvva 99 (153)
..+|+++
T Consensus 216 ~TII~iT 222 (382)
T TIGR03415 216 KTIIFVS 222 (382)
T ss_pred CEEEEEe
Confidence 5566655
No 368
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.64 E-value=3.7e+02 Score=21.53 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=29.9
Q ss_pred CcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 47 YCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 47 ~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
..=-+++..+++..++++++=|..-.+|.-. +.+..+.+++.+ +..+|+++
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~t 220 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVT 220 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEE
Confidence 3335778888999999999977644333222 223333434443 34566665
No 369
>PF02424 ApbE: ApbE family; InterPro: IPR003374 This prokaryotic family of lipoproteins are related to ApbE, from Salmonella typhimurium. ApbE is involved in thiamine synthesis []. More specifically is may be involved in the conversion of aminoimidazole ribotide (AIR) to 4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP) during the biosynthesis of the pyrimidine moiety of thiamine.; PDB: 2O34_B 2O18_C 1VRM_A 3PND_D.
Probab=20.63 E-value=1.1e+02 Score=25.01 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCc-EEEEEcCC
Q psy5985 13 LPQIAAKLKELKIQ-ALLIIGGF 34 (153)
Q Consensus 13 ~~~~~~~L~~~~Id-~LvvIGGd 34 (153)
.+++++.|+++++. +||=+|||
T Consensus 119 vD~~~~~L~~~gi~~~lVn~GGd 141 (254)
T PF02424_consen 119 VDRAAELLREAGITNALVNAGGD 141 (254)
T ss_dssp HHHHHHHHHHTTTSCEEEEETTE
T ss_pred HHHHHHHHHHcCCCeEEEeCCCc
Confidence 68899999999995 56666655
No 370
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=20.62 E-value=1.2e+02 Score=23.51 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCC
Q psy5985 12 KLPQIAAKLKELKIQALLIIGGFE 35 (153)
Q Consensus 12 ~~~~~~~~L~~~~Id~LvvIGGdg 35 (153)
+...+++.|++.++..+++-||-.
T Consensus 129 dl~~~l~~L~~~g~~~llveGG~~ 152 (216)
T TIGR00227 129 DLKKLMEILYEEGINSVMVEGGGT 152 (216)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCHH
Confidence 577899999999999999999854
No 371
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=20.62 E-value=4e+02 Score=20.50 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=34.3
Q ss_pred EEEecCCCcCHHHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 40 ALKTMGGYCGYLATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 40 iVEvMGR~aG~LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvva 99 (153)
+-+.-|...=-+++..+++..|+++++=|.. +|.+... .+..+.+++++ ++..+|+++
T Consensus 147 ~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~-~l~~~l~~~~~-~g~tii~vs 206 (224)
T TIGR02324 147 PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ-VVVELIAEAKA-RGAALIGIF 206 (224)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH-HHHHHHHHHHh-cCCEEEEEe
Confidence 3344555555678888899999999987753 4433322 22223334433 345677776
No 372
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=20.55 E-value=3.8e+02 Score=20.76 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=33.2
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEeCC
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRNEK 101 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvvaEG 101 (153)
.-|...=-+++..+++..++++++=|..-.+|... +.+..+.+.+.+ ++..+|+++--
T Consensus 144 LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~ 202 (226)
T cd03234 144 ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQ 202 (226)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecC
Confidence 33444445778888999999999977644443222 222223333433 24567777644
No 373
>PRK13409 putative ATPase RIL; Provisional
Probab=20.46 E-value=3e+02 Score=25.50 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=20.1
Q ss_pred CHHHHHHHhhcCCCEEEEcCCC--CCHHH
Q psy5985 49 GYLATVAGLAGGADAAYIYEEK--FSIKD 75 (153)
Q Consensus 49 G~LA~~aglA~gad~iliPE~~--~~~~~ 75 (153)
=-++++.+++..|+++++-|.. .|...
T Consensus 219 qrv~ia~al~~~p~lllLDEPts~LD~~~ 247 (590)
T PRK13409 219 QRVAIAAALLRDADFYFFDEPTSYLDIRQ 247 (590)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 3467888899999999998863 45443
No 374
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.42 E-value=92 Score=23.46 Aligned_cols=61 Identities=20% Similarity=0.136 Sum_probs=40.4
Q ss_pred CcHHHHHHHHHHcCC-cEEEEEcCCCCeEEEEEecCCCcCHHH--HHHHhhcCCCEEEEcCCCCCHHHHHHHHHH
Q psy5985 11 KKLPQIAAKLKELKI-QALLIIGGFEVSFFALKTMGGYCGYLA--TVAGLAGGADAAYIYEEKFSIKDLQQDLYH 82 (153)
Q Consensus 11 e~~~~~~~~L~~~~I-d~LvvIGGdgs~v~iVEvMGR~aG~LA--~~aglA~gad~iliPE~~~~~~~l~~~i~~ 82 (153)
+.+++..+.|++.++ +..+++||.-.. +. -..+ -....+.|.|.++-|.. +++++++.+++
T Consensus 67 ~~~~~~~~~l~~~gl~~~~vivGG~~vi-------~~--~d~~~~~~~l~~~Gv~~vF~pgt--~~~~iv~~l~~ 130 (134)
T TIGR01501 67 IDCKGLRQKCDEAGLEGILLYVGGNLVV-------GK--QDFPDVEKRFKEMGFDRVFAPGT--PPEVVIADLKK 130 (134)
T ss_pred HHHHHHHHHHHHCCCCCCEEEecCCcCc-------Ch--hhhHHHHHHHHHcCCCEEECcCC--CHHHHHHHHHH
Confidence 458889999999999 556778886421 00 0111 12345578999999988 45788877653
No 375
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=20.42 E-value=3.7e+02 Score=21.69 Aligned_cols=77 Identities=8% Similarity=0.088 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCeEEEEEecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCe
Q psy5985 15 QIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQR 93 (153)
Q Consensus 15 ~~~~~L~~~~Id~LvvIGGdgs~v~iVEvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~ 93 (153)
++.+.|+..+++.+. +. .+-+.-|...=-+++..+++..|+++++=|..-.+|.-. +.+..+.+++++ ++.
T Consensus 122 ~~~~~l~~~gl~~~~-----~~--~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~ 193 (272)
T PRK15056 122 IVTAALARVDMVEFR-----HR--QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGK 193 (272)
T ss_pred HHHHHHHHcCChhHh-----cC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCC
Confidence 344556666665321 11 123344444445778888999999999977643333221 222223334432 244
Q ss_pred EEEEEe
Q psy5985 94 GLILRN 99 (153)
Q Consensus 94 ~iIvva 99 (153)
.+|+++
T Consensus 194 tviivs 199 (272)
T PRK15056 194 TMLVST 199 (272)
T ss_pred EEEEEe
Confidence 566655
No 376
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=20.41 E-value=3.9e+02 Score=20.97 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=31.6
Q ss_pred ecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 43 vMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
.-|...=-+++..+++..|+++++=|..-.+|.-. +.+..+.+++.+ ++..+|+++
T Consensus 145 LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~t 201 (250)
T PRK11264 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVT 201 (250)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 33444445888999999999999977643333221 222223334433 344566665
No 377
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=20.40 E-value=2.4e+02 Score=24.76 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHHcCCc---EEEEEcCCCCeEEEEEecCCCcCHHHHHHH--hhcCCCEEEEcCC
Q psy5985 11 KKLPQIAAKLKELKIQ---ALLIIGGFEVSFFALKTMGGYCGYLATVAG--LAGGADAAYIYEE 69 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id---~LvvIGGdgs~v~iVEvMGR~aG~LA~~ag--lA~gad~iliPE~ 69 (153)
+...++.+.+.+++.| .+|.||| ...+++|=.+| .-.|..+|.+|=-
T Consensus 83 ~~v~~i~~~l~~~~~~r~~~IIalGG------------G~v~D~ag~vA~~~~rGip~I~IPTT 134 (369)
T cd08198 83 DLVEALHAAINRHGIDRHSYVIAIGG------------GAVLDAVGYAAATAHRGVRLIRIPTT 134 (369)
T ss_pred HHHHHHHHHHHHcCCCcCcEEEEECC------------hHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3456777888888887 8888885 55666664333 2347888888854
No 378
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.39 E-value=3.8e+02 Score=21.36 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=33.2
Q ss_pred EecCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 42 KTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 42 EvMGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
+.-|...=-+++..+++..++++++=|..-.+|.-. +.+..+.+++++ +..+|+++
T Consensus 154 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivs 210 (258)
T PRK14268 154 SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVT 210 (258)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEE
Confidence 344445556788899999999999987644443322 222233334433 35666666
No 379
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.38 E-value=3.5e+02 Score=19.63 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=29.2
Q ss_pred HHHHHHhhcCCCEEEEcCCCC--CHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Q psy5985 51 LATVAGLAGGADAAYIYEEKF--SIKDLQQDLYHMASKMAEGVQRGLILRNEK 101 (153)
Q Consensus 51 LA~~aglA~gad~iliPE~~~--~~~~l~~~i~~i~~~~~~~~~~~iIvvaEG 101 (153)
+++..+++..++++++=|..- |.+... .+..+.+++.+. +..+++++--
T Consensus 89 ~~l~~~l~~~~~i~ilDEp~~~lD~~~~~-~l~~~l~~~~~~-~~tii~~sh~ 139 (157)
T cd00267 89 VALARALLLNPDLLLLDEPTSGLDPASRE-RLLELLRELAEE-GRTVIIVTHD 139 (157)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHH-HHHHHHHHHHHC-CCEEEEEeCC
Confidence 678888889999999987744 433322 222233334332 4567777643
No 380
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=20.33 E-value=1.3e+02 Score=24.78 Aligned_cols=45 Identities=9% Similarity=-0.022 Sum_probs=25.6
Q ss_pred HhhcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 56 GLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 56 glA~gad~iliPE~~~~~~~l~~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
.+..++-.+++++.+..-+...+.++++.+++.+.+-..|||+|=
T Consensus 4 ~l~~H~P~~~~~~~~~~~~~~~~al~~l~~~l~~~~Pd~IvviS~ 48 (268)
T cd07371 4 FLVPGPPLPQLGENVPQWEPRSWAYERAGASLAASRPDVVLVYST 48 (268)
T ss_pred EecCCCCcccCCCCCCcchHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 455565555544443334455566666776776545566666664
No 381
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=20.32 E-value=60 Score=28.14 Aligned_cols=25 Identities=12% Similarity=0.356 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCC
Q psy5985 11 KKLPQIAAKLKELKIQALLIIGGFE 35 (153)
Q Consensus 11 e~~~~~~~~L~~~~Id~LvvIGGdg 35 (153)
+.++++.+.+++.+.|.+|+||-|.
T Consensus 75 ~a~~~~~~~i~~~~PDvlViispdh 99 (335)
T PRK13363 75 AAIERMRDAIEAARIDVAVIVGNDQ 99 (335)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4688899999999999999999998
No 382
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=20.27 E-value=3.9e+02 Score=21.04 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=31.4
Q ss_pred cCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHH-HHHHHHHHHHHHcCCCeEEEEEe
Q psy5985 44 MGGYCGYLATVAGLAGGADAAYIYEEKFSIKDL-QQDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 44 MGR~aG~LA~~aglA~gad~iliPE~~~~~~~l-~~~i~~i~~~~~~~~~~~iIvva 99 (153)
-|...=-+++..+++..++++++-|..-.+|.- .+.+..+.+++.+ +..+|+++
T Consensus 150 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~s 204 (252)
T PRK14239 150 SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVT 204 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEE
Confidence 344444678888999999999998864433322 1222233334433 34666666
No 383
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=20.17 E-value=3.5e+02 Score=20.61 Aligned_cols=47 Identities=6% Similarity=-0.026 Sum_probs=27.4
Q ss_pred HHHHHHhhcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q psy5985 51 LATVAGLAGGADAAYIYEEK--FSIKDLQQDLYHMASKMAEGVQRGLILRNE 100 (153)
Q Consensus 51 LA~~aglA~gad~iliPE~~--~~~~~l~~~i~~i~~~~~~~~~~~iIvvaE 100 (153)
+++..+++..++++++-|.. .|.+... .+..+.+++. ++..+|+++-
T Consensus 134 v~laral~~~p~llllDEP~~~LD~~~~~-~l~~~l~~~~--~~~tiii~th 182 (207)
T cd03369 134 LCLARALLKRPRVLVLDEATASIDYATDA-LIQKTIREEF--TNSTILTIAH 182 (207)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHH-HHHHHHHHhc--CCCEEEEEeC
Confidence 67788888899999996653 4443322 2222333332 2456666663
No 384
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=20.17 E-value=1e+02 Score=23.91 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=17.2
Q ss_pred HHHHHHcCCcEEEEEcCCCCe
Q psy5985 17 AAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 17 ~~~L~~~~Id~LvvIGGdgs~ 37 (153)
++.+.+++.|++|+-||.|+.
T Consensus 36 ~~~~~~~~~d~iilsgGpg~p 56 (188)
T TIGR00566 36 LQEIEALLPLLIVISPGPCTP 56 (188)
T ss_pred HHHHHhcCCCEEEEcCCCCCh
Confidence 345677889999999999985
No 385
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=20.11 E-value=49 Score=26.42 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCe
Q psy5985 13 LPQIAAKLKELKIQALLIIGGFEVS 37 (153)
Q Consensus 13 ~~~~~~~L~~~~Id~LvvIGGdgs~ 37 (153)
...+++.|++++|| ++.||+-|+
T Consensus 8 ~p~~~~vf~~~gid--~cc~g~~~l 30 (216)
T TIGR03652 8 IPRAARIFRKYGID--FCCGGNVSL 30 (216)
T ss_pred CccHHHHHHHcCCC--ccCCCcchH
Confidence 34678899999999 888998887
No 386
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.07 E-value=3.9e+02 Score=21.03 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=31.5
Q ss_pred cCCCcCHHHHHHHhhcCCCEEEEcCCCCCHHHHH-HHHHHHHHHHHcCCCeEEEEEe
Q psy5985 44 MGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQ-QDLYHMASKMAEGVQRGLILRN 99 (153)
Q Consensus 44 MGR~aG~LA~~aglA~gad~iliPE~~~~~~~l~-~~i~~i~~~~~~~~~~~iIvva 99 (153)
-|...=-+++..+++..++++++=|..-.+|... +.+..+.+++.+ +..+|+++
T Consensus 148 S~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~s 202 (250)
T PRK14262 148 SGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVT 202 (250)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEe
Confidence 3444446788899999999999976644433222 122233334443 34666665
Done!