RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5985
(153 letters)
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 125 bits (316), Expect = 2e-34
Identities = 63/92 (68%), Positives = 79/92 (85%)
Query: 39 FALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLILR 98
F ++TMGGYCGYLAT+AGLA GADAAYI+EE F+I+DLQ ++ H+ KM V+RGL+LR
Sbjct: 568 FIIETMGGYCGYLATMAGLAAGADAAYIFEEPFTIRDLQANVEHLVQKMKTTVKRGLVLR 627
Query: 99 NEKCNDNYNTDFIYRLYSEEGKGLFSARQNVL 130
NEKCN+NY TDFI+ LYSEEGKG+F +R+NVL
Sbjct: 628 NEKCNENYTTDFIFNLYSEEGKGIFDSRKNVL 659
Score = 60.1 bits (146), Expect = 2e-11
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 39 FALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRG---- 94
F L+ MG +CGYLA V L+ GAD +I E + +++E RG
Sbjct: 203 FVLEVMGRHCGYLALVTSLSCGADWVFIPECPPDDNWEDH----LCRRLSETRTRGSRLN 258
Query: 95 LILRNEKCND----NYNTDFIYRLYSEEGKGLFSARQNVL 130
+I+ E D ++ + L + R VL
Sbjct: 259 IIIVAEGAIDRNGKPITSEGVKDLVVRRLG--YDTRVTVL 296
Score = 53.5 bits (129), Expect = 3e-09
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 1 MLGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFEVSFFALKTM 44
LG+KRTLP+K QI+A + + IQ L+IIGGFE ++ +
Sbjct: 466 KLGSKRTLPKKSFEQISANITKFNIQGLVIIGGFE-AYTGGLEL 508
Score = 30.4 bits (69), Expect = 0.23
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 1 MLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGG 33
++G+ R + + A L + I L +IGG
Sbjct: 83 VIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGG 118
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 123 bits (310), Expect = 1e-33
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRG----LILR 98
GG GY+AT A LA GA +Y+ EE S+ L+ D+ + A + LIL+
Sbjct: 745 VQGGNSGYIATHAQLACGAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKSGRLILK 804
Query: 99 NEKCNDNYNTDFIYRLYSEEGKGLFSARQNVL 130
+E + T+ I + +E G F ++ +
Sbjct: 805 SENASKVLTTEVISTIIDDEASGRFDSKTAIP 836
Score = 60.1 bits (146), Expect = 2e-11
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 39 FALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRG---- 94
F ++ MG +CG+L +AGLA AD I E+ S ++ Q M + + RG
Sbjct: 370 FIVEVMGRHCGWLGLLAGLATSADYILIPEKPASSREWQDQ---MCDIVGKHRARGKRKT 426
Query: 95 LILRNEKCNDN----YNTDFIYRLYSEEGKGLFSARQNVL 130
+++ E N + D + + R L
Sbjct: 427 IVIVAEGAISNDLSPISCDQVKDVLVNRLG--LDTRVTTL 464
Score = 52.4 bits (126), Expect = 8e-09
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 1 MLGTKRTLPEK-KLPQIAAKLKELKIQALLIIGGFEVSFFALKTM 44
+GT RTLP + IA ++ L+++GGFE +F +L +
Sbjct: 638 EIGTNRTLPNDADIGMIAYFFEKYGFDGLILVGGFE-AFISLHQL 681
Score = 31.2 bits (71), Expect = 0.13
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 1 MLGTKRTLPEKKLP---QIAAKLKELKIQALLIIGG 33
+GT R ++ + + ++ I AL++ GG
Sbjct: 250 NIGTARCKEFRERSGRLKACKNMIDMGIDALIVCGG 285
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 122 bits (307), Expect = 3e-33
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 39 FALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRG---- 94
F ++ GGY GYLA+ AGL GA A Y E +++ +Q+D+ + E +
Sbjct: 767 FVVEVQGGYSGYLASYAGLITGALAVYTPENPINLQTVQEDIELLTRTYEEDDGKNRSGK 826
Query: 95 LILRNEKCNDNYNTDFIYRLYSEEGKGLFSARQNVL 130
+ + NEK + Y TD I + E GKG F +R V
Sbjct: 827 IFIHNEKASKVYTTDLIAAIIGEAGKGRFESRTAVP 862
Score = 60.2 bits (146), Expect = 1e-11
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Query: 39 FALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRG---- 94
F ++ MG +CG+L ++G+A GAD +I E S + + D + ++G
Sbjct: 398 FVVEVMGRHCGWLGLMSGIATGADYIFIPERPPSESNWKDD---LKKVCLRHREKGRRKT 454
Query: 95 LILRNEKCNDNYNTDFIYRLYSEEGKGL-FSARQNVL 130
++ E D+ + + R L
Sbjct: 455 TVIVAEGAIDDQLNPITSEEVKDVLVEIGLDTRITRL 491
Score = 54.1 bits (130), Expect = 2e-09
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 1 MLGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFEVSFFALKTM 44
+GT R+LP + +A ++ K L+IIGGFE +F AL +
Sbjct: 665 EIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFE-AFTALYEL 707
Score = 31.3 bits (71), Expect = 0.12
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 1 MLGTKRTLPEKKLP---QIAAKLKELKIQALLIIGG 33
++GT R ++ Q + I AL++ GG
Sbjct: 278 IIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGG 313
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 121 bits (307), Expect = 4e-33
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 43 TMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRG----LILR 98
GG GYLAT A LA GA +Y+ EE S++ L +D+ ++A + RG LIL+
Sbjct: 567 CQGGNSGYLATYASLAVGAQVSYVPEEGISLEQLSEDIEYLAQSFEKAEGRGRFGKLILK 626
Query: 99 NEKCNDNYNTDFIYRLYSEEGKGLFSARQNVL 130
+ + + + + + E G F A+
Sbjct: 627 STNASKALSATKLAEVITAEADGRFDAKPAYP 658
Score = 60.0 bits (146), Expect = 1e-11
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 39 FALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRG---- 94
F ++ MG CG+LA +AG+A AD +I E+ + + Q M +++ RG
Sbjct: 192 FVVEVMGRNCGWLALLAGIATSADYIFIPEKPATSSEWQDQ---MCDIVSKHRSRGKRTT 248
Query: 95 LILRNEKCNDNYNT----DFIYRLYSEEGKGLFSARQNVL 130
+++ E T ++++ + R L
Sbjct: 249 IVVVAEGAIAADLTPISPSDVHKVLVDRLG--LDTRITTL 286
Score = 51.5 bits (124), Expect = 2e-08
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 1 MLGTKRTLPEK-KLPQIAAKLKELKIQALLIIGGFEVSFFALKTM 44
+GT R PE+ L IA ++ + L+I+GGFE +F +L +
Sbjct: 460 EIGTNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFE-AFESLHQL 503
Score = 30.7 bits (70), Expect = 0.17
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 1 MLGTKRTLPEKKLP---QIAAKLKELKIQALLIIGG 33
+GT R + KK A L E + AL++ GG
Sbjct: 72 NIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGG 107
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 120 bits (303), Expect = 1e-32
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 39 FALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRG---- 94
F + GG+ GY+A+ GL GA + Y E+K + +++D+ +
Sbjct: 562 FVCEVQGGHSGYIASFTGLITGAVSVYTPEKKIDLASIREDITLLKENFRHDKGENRNGK 621
Query: 95 LILRNEKCNDNYNTDFIYRLYSEEGKGLFSARQNVL 130
L++RNE+ + Y+T + + SE KG F R +
Sbjct: 622 LLVRNEQASSVYSTQLLADIISEASKGKFGVRTAIP 657
Score = 59.7 bits (145), Expect = 2e-11
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 39 FALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRG---- 94
F ++ MG +CG+LA +AG+A GAD +I E Q + + +G
Sbjct: 193 FVVEVMGRHCGWLALMAGIATGADYIFIPERAVPHGKWQDE---LKEVCQRHRSKGRRNN 249
Query: 95 LILRNEKCND-NYNTDFIYRLYSEEGKGLFSARQNVL 130
I+ E D N + + + +L
Sbjct: 250 TIIVAEGALDDQLNPVTANDVKDALIELGLDTKVTIL 286
Score = 53.9 bits (130), Expect = 2e-09
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 1 MLGTKRTLPEKKLPQIAAKLKELKIQALLIIGGFEVSFFALKTM 44
+GT R++ + L IA ++ K+ L+I+GGFE F +LK +
Sbjct: 460 EIGTNRSVASEDLGTIAYYFQKNKLDGLIILGGFE-GFRSLKQL 502
Score = 31.5 bits (72), Expect = 0.092
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 1 MLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGG 33
++GT R++ + Q A L I AL++ GG
Sbjct: 73 LIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGG 108
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 48.6 bits (117), Expect = 1e-07
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 44 MGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRG 94
MG + G +A AGLAGGA++ I E + + + + +++ G +RG
Sbjct: 169 MGRHAGDIALWAGLAGGAESILIPEADYDMHE-------IIARLKRGHERG 212
Score = 31.3 bits (72), Expect = 0.085
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 1 MLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGG 33
L T R + + A LK+L I+ L++IGG
Sbjct: 67 KLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGG 102
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 48.6 bits (117), Expect = 1e-07
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 44 MGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRG 94
MG CG +A G+A GADA I E + +++ +A+++ + + G
Sbjct: 169 MGRNCGDIAMRVGVACGADAIVIPERPYDVEE-------IANRLKQAQESG 212
Score = 31.3 bits (72), Expect = 0.085
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 1 MLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGG 33
L + R E+ +LK+ I A+++IGG
Sbjct: 67 FLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGG 102
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 48.2 bits (116), Expect = 2e-07
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 44 MGGYCGYLATVAGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRG 94
MG YCG L A +AGG + + E +FS +D + +++ G+ +G
Sbjct: 170 MGRYCGDLTLAAAIAGGCEFVVVPEVEFSRED-------LVNEIKAGIAKG 213
Score = 32.0 bits (74), Expect = 0.056
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 1 MLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGG 33
LG+ R E LK+ I AL++IGG
Sbjct: 68 FLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGG 103
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 8e-06
Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 34/132 (25%)
Query: 4 TKRTLP-EKKLPQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGAD 62
K + + ++ L EL+ ++I G + G G T +A
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDG----------VLG-SG--KTW--VALDVC 171
Query: 63 AAYIYEEKF----------------SIKDLQQDLYHMASKMAEGVQRGLILRNEKCNDNY 106
+Y + K ++ ++ Q L + R N K +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN--WTSRSDHSSNIKLRIHS 229
Query: 107 NTDFIYRLYSEE 118
+ RL +
Sbjct: 230 IQAELRRLLKSK 241
Score = 29.4 bits (65), Expect = 0.53
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 61 ADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLILRNEKCNDNYNTDFIYRLYSEEGK 120
+ +I K ++ + + + SK E VQ+ + E NY F+ E +
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV---EEVLRINY--KFLMSPIKTEQR 103
Query: 121 GLFSARQNVLAKHDSAY 137
+ + + D Y
Sbjct: 104 QPSMMTRMYIEQRDRLY 120
Score = 29.1 bits (64), Expect = 0.64
Identities = 20/124 (16%), Positives = 33/124 (26%), Gaps = 43/124 (34%)
Query: 68 EEKFSIKDLQQDLYHMASKMAEGVQRGLI----LRNEKCN--------DNYNTDFI-YRL 114
E SI + +L + R ++ + + D Y I + L
Sbjct: 423 ESTISIPSIYLELKVKLENEYA-LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 115 YSEEGKGLFSARQNVL-------AK--HDSA-----------------YEEEGMYITVEE 148
+ E + + V K HDS Y+ YI +
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP---YICDND 538
Query: 149 EKIE 152
K E
Sbjct: 539 PKYE 542
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 42.9 bits (101), Expect = 1e-05
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 39 FALKTMGGYCGYLATVAGLAGGADAAYIYEEKFSIKD-LQQDLYHMASKMAEGVQRG 94
+K MG ++A L + + EE + K L + + M S + + G
Sbjct: 246 HFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNG 302
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 39.7 bits (93), Expect = 2e-04
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 39 FALKTMGGYCGYLATVAGLAGG-ADAAYIYEEKFSIKDLQQDLYHMASK-------MAEG 90
+K MG G++A A +A A+ + E S +++ L +AEG
Sbjct: 267 GVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQEVMSLLERRFCHSRSCVIIVAEG 326
Query: 91 V 91
Sbjct: 327 F 327
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 32.8 bits (75), Expect = 0.036
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 41 LKTMGGYCGYLATVAGLAGGADAA---YIY--EEKFSIKDLQQDL-------YHMASKMA 88
L+ MG + G++A GLA + I E F + + + + ++
Sbjct: 187 LEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQKFLAKVDSCVKKFGYCSVVVS 246
Query: 89 EGVQ 92
EGV+
Sbjct: 247 EGVK 250
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar
transport, SGLT, ION TRAN membrane, sodium transport,
symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Length = 530
Score = 30.5 bits (69), Expect = 0.23
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 25 IQA-LLIIGGFEVSFFALKTMGGYCGYLATVAGL 57
IQ L++GGF ++ A+ +GG G+ A V+ +
Sbjct: 162 IQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKM 195
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.48
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 69 EKFSIKDLQQDL--YHMASKMAEGVQ 92
EK ++K LQ L Y S A ++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats,
LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus}
PDB: 2xq2_B 2kpe_A
Length = 593
Score = 29.0 bits (65), Expect = 0.73
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 25 IQA-LLIIGGFEVSFFALKTMGGYCGYLATVA 55
IQ L++GGF ++ A+ +GG G+ A V+
Sbjct: 191 IQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVS 222
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme
chaperone, cytochrome C biogenesis, OB-fold domain,
NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Length = 94
Score = 27.1 bits (60), Expect = 1.2
Identities = 4/24 (16%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 117 EEGKGLFSARQNVLAKHDSAYEEE 140
G+ F A + ++ K +
Sbjct: 70 APGEDTFKA-RTLMTKCPLEHHHH 92
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA
complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4}
SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Length = 259
Score = 27.7 bits (62), Expect = 1.4
Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 67 YEEKFSIKDLQQDLYHMASKMAEGVQRGL--ILRNEKCNDNYNTDFIYRLYSE 117
Y + +S + ++DL ++ + + RG+ L N + + +
Sbjct: 181 YNKFWSEDE-EKDLLNLLDSLND---RGIKFGLSNVLEHHGKENTLLKEWSKK 229
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0
domain, membrane protein xanthomonas, lipoprotein; NMR
{Xanthomonas axonopodis PV}
Length = 120
Score = 26.8 bits (58), Expect = 2.3
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 76 LQQDLYHMASKMAEGVQRGLILR---NEKCNDNYNTDFIYRLYSEEGKGLFSARQNVLAK 132
L + A+ M +G + ++ R + +YN Y L ++ Q +
Sbjct: 30 LYTSYTYQATPM-DGTLKTMLERWAADSNMQLSYNLPSDYTLIGPVSAISTTSVQQAATE 88
Query: 133 HDSAYEEEGMYITVEEEKIEV 153
+ Y +G+ ++V K+ V
Sbjct: 89 LSAVYAAQGVSVSVSANKLLV 109
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme
delivery,cytochrome C maturation, OB- (oligonucleotide
binding)fold; NMR {Shewanella putrefaciens} SCOP:
b.40.9.1 PDB: 1lm0_A
Length = 136
Score = 26.3 bits (58), Expect = 2.8
Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 118 EGKGLFSARQNVLAKHDSAY 137
G +A VLAKHD Y
Sbjct: 92 GEDGKLAA-TEVLAKHDENY 110
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain,
chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Length = 136
Score = 26.3 bits (58), Expect = 3.1
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 120 KGLFSARQNVLAKHDSAYE 138
A++ VLAKHD Y
Sbjct: 89 GNHILAKE-VLAKHDENYT 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 4.1
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 20/93 (21%)
Query: 61 ADAAYIYEEKFSIKDLQQD-----LYHMASKMAEGVQRGLILRNEKCNDNYNTDFIYRLY 115
AD + FSI D+ + H G ++G +R +NY + I+
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIH------FGGEKGKRIR-----ENY-SAMIFETI 1696
Query: 116 SE---EGKGLFSARQNVLAKHDSAYEEEGMYIT 145
+ + + +F + E+ + T
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system
component, bacteri membrane, xanthomonas axonopodis PV
citri; 1.04A {Xanthomonas axonopodis PV}
Length = 85
Score = 25.2 bits (54), Expect = 4.7
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 106 YNTDFIYRLYSEEGKGLFSARQNVLAKHDSAYEEEGMYITVEEEKIEV 153
YN Y L ++ Q + + Y +G+ ++V K+ V
Sbjct: 32 YNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSANKLLV 79
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase;
HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae}
SCOP: a.102.2.1 PDB: 1g6i_A*
Length = 511
Score = 25.8 bits (56), Expect = 7.2
Identities = 10/55 (18%), Positives = 23/55 (41%)
Query: 55 AGLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLILRNEKCNDNYNTD 109
D+ Y Y K + + Y + K EG+++ L+ +++ + Y +
Sbjct: 235 IRFGSRGDSFYEYLLKQYLLTHETLYYDLYRKSMEGMKKHLLAQSKPSSLWYIGE 289
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.380
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,335,361
Number of extensions: 133681
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 49
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (23.9 bits)