RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5985
         (153 letters)



>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 511

 Score = 25.8 bits (56), Expect = 2.5
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 56  GLAGGADAAYIYEEKFSIKDLQQDLYHMASKMAEGVQRGLILRNEKCNDNYNTD 109
                 D+ Y Y  K  +   +   Y +  K  EG+++ L+ +++  +  Y  +
Sbjct: 236 RFGSRGDSFYEYLLKQYLLTHETLYYDLYRKSMEGMKKHLLAQSKPSSLWYIGE 289


>d1sr3a_ b.40.9.1 (A:) Heme chaperone CcmE {Escherichia coli [TaxId:
           562]}
          Length = 114

 Score = 24.9 bits (54), Expect = 3.3
 Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 1/18 (5%)

Query: 120 KGLFSARQNVLAKHDSAY 137
                A++ VLAKHD  Y
Sbjct: 89  GNHILAKE-VLAKHDENY 105


>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 189

 Score = 24.7 bits (53), Expect = 4.1
 Identities = 10/55 (18%), Positives = 18/55 (32%)

Query: 13  LPQIAAKLKELKIQALLIIGGFEVSFFALKTMGGYCGYLATVAGLAGGADAAYIY 67
             ++   L +L      ++       F     G   G  A ++GL  G    +I 
Sbjct: 126 RDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFID 180


>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
           phosphofructokinase {Lyme disease spirochete (Borrelia
           burgdorferi) [TaxId: 139]}
          Length = 550

 Score = 24.2 bits (52), Expect = 8.3
 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 1   MLGTKRTLP---EKKLPQIAAKLKELKIQALLIIGGFE 35
            + +        E+   +     KE  + A++IIGG +
Sbjct: 137 DIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDD 174


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 552,048
Number of extensions: 23692
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 9
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)