BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5987
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 268 bits (684), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 127/184 (69%), Positives = 150/184 (81%)
Query: 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
+ GMNAAVRA VR+GI+ G +VFF+ EGYQG+VDGGD+I EA W SVS ++ GGTVIGS
Sbjct: 27 AQGMNAAVRAVVRVGIFTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGS 86
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSIT 130
ARC DFRE+ GRL+AA NL+ RGITNL VIGGDGSLTGA+ FR EW +LL L K G IT
Sbjct: 87 ARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKIT 146
Query: 131 KDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIME 190
++ + +L+I GLVGSIDNDFCGTDMTIGTDSALHRI E +DAI +TA SHQRTF++E
Sbjct: 147 AEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVDAITTTAQSHQRTFVLE 206
Query: 191 VMGR 194
VMGR
Sbjct: 207 VMGR 210
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 22/192 (11%)
Query: 3 AQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 62
A +N + + GMNAAVR+ VR+G+ G +V + +G++G G I EA WS V
Sbjct: 404 AVMNVGAPAAGMNAAVRSTVRIGLIQGNRVLVVHDGFEGPAKG--QIEEAGWSYVGGWTG 461
Query: 63 KGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQ 122
+GG+ +GS R K + + N+ I LV+IGG + TG EL++
Sbjct: 462 QGGSKLGSKRT---LPKKSFEQISANITKFNIQGLVIIGGFEAYTGG-------LELME- 510
Query: 123 LLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAI-VSTAY 181
+ Q ++ C + + ++ N+ G+D ++G D+AL+ I D I S A
Sbjct: 511 -------GRKQFDELC-IPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSAAG 562
Query: 182 SHQRTFIMEVMG 193
+ +R FI+E MG
Sbjct: 563 TKRRVFIIETMG 574
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 225 bits (574), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 108/184 (58%), Positives = 135/184 (73%)
Query: 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
+ GMNAAVRA R GI+ GCKV+ EGY G+V GGD + E W V ++ GGT+IG+
Sbjct: 222 APGMNAAVRAVTRAGIFYGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGT 281
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSIT 130
ARC +FRE+ GRL+A N++ GI LVV GGDGSLTGA+LFR+EWPEL+ +LL + IT
Sbjct: 282 ARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKIT 341
Query: 131 KDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIME 190
K+Q E + +L I GLVGSIDND CGTD TIG S+L RIIE +D I +TA SH R F++E
Sbjct: 342 KEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLERIIELVDYIDATAASHSRAFVVE 401
Query: 191 VMGR 194
VMGR
Sbjct: 402 VMGR 405
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 33/192 (17%)
Query: 9 SSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVI 68
+ ++ +N A R + G +VF I+ G+ G++ G + E NW V + GG+ I
Sbjct: 608 APTSALNPATRVATLNSLAKGHRVFAIRNGFAGLIRHG-AVRELNWIDVEDWHNTGGSEI 666
Query: 69 GSARC---SDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGA---NLFRQEWPELLDQ 122
G+ R D A + K L++IGG + T + R ++P
Sbjct: 667 GTNRSLPSDDMGTVAYYFQQYK------FDGLIIIGGFEAFTALYELDAARAQYPIF--- 717
Query: 123 LLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAY- 181
++ + L ++ N+ GT+ ++G+D+ L+ + DA+ +A
Sbjct: 718 ----------------NIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASA 761
Query: 182 SHQRTFIMEVMG 193
S +RTF++EV G
Sbjct: 762 SRRRTFVVEVQG 773
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 212 bits (540), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/184 (56%), Positives = 132/184 (71%)
Query: 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
S GMNAAVRA VR GI+ GC VF + EGY+G++ GG + + W V + +GGT+IG+
Sbjct: 17 SPGMNAAVRAVVRTGIHFGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGT 76
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSIT 130
AR +FR++ GR +AA NLI +GI LVV GGDGSLTGA+LFR EWP L+D+L+ +G T
Sbjct: 77 ARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFT 136
Query: 131 KDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIME 190
K++ Y +L I GLVGSIDND GTD TIG SAL RI E +D I +TA SH R F++E
Sbjct: 137 KEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYIDATAKSHSRAFVVE 196
Query: 191 VMGR 194
VMGR
Sbjct: 197 VMGR 200
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 29 GCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKA--A 86
G K + I G+ G++ G+ + E +W V + + GG+ IG+ R S E G +
Sbjct: 423 GHKPYAIMNGFSGLIQTGE-VKELSWIDVENWHNLGGSEIGTNR-SVASEDLGTIAYYFQ 480
Query: 87 KNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLV 146
KN +D L+++GG G +Q L+DG + ++ + +
Sbjct: 481 KNKLD----GLIILGG---FEGFRSLKQ---------LRDGRT----QHPIFNIPMCLIP 520
Query: 147 GSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAY-SHQRTFIMEVMG 193
++ N+ GT+ ++G D+ L+ ++ D I +A + +R F+ EV G
Sbjct: 521 ATVSNNVPGTEYSLGVDTCLNALVNYTDDIKQSASATRRRVFVCEVQG 568
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 209 bits (533), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/185 (57%), Positives = 131/185 (70%), Gaps = 1/185 (0%)
Query: 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDN-IVEANWSSVSSIIHKGGTVIG 69
S GMN VRA VR GIY GCKVF I EGY+G+V GG+ I E W V + +GGT IG
Sbjct: 193 SPGMNPFVRAVVRAGIYKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIG 252
Query: 70 SARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSI 129
+ARC +FRE++GRLKA KN+ID GI L+V GGDGSLTGA+ FR EWP L+++LL+ I
Sbjct: 253 TARCKEFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQI 312
Query: 130 TKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIM 189
++ Q + +L+I G VGSIDND TD TIG S+L RI AID I +TA SH R FI+
Sbjct: 313 SQQQFNTHQNLNICGAVGSIDNDMSSTDATIGAFSSLDRICRAIDYIDATANSHSRAFIV 372
Query: 190 EVMGR 194
EVMGR
Sbjct: 373 EVMGR 377
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 24/194 (12%)
Query: 3 AQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 62
A +N + + GMN+AV + + G + I G+ G+ +++ NW +
Sbjct: 575 AIINVGAPAGGMNSAVYSMATYCMSRGHVPYAIHNGFSGLARH-ESVRSINWLDIEGWGS 633
Query: 63 KGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQ 122
GG+ IG+ R G + A G L+++GG + L Q
Sbjct: 634 LGGSEIGTNRTLPNDADIGMI--AYFFEKYGFDGLILVGGFEAFIS-----------LHQ 680
Query: 123 LLKDGSITKDQREKYCHLHIAGLV--GSIDNDFCGTDMTIGTDSALHRIIEAIDAI-VST 179
L + R Y L I ++ +I N+ GT+ ++G+D+ L+ +E D I S
Sbjct: 681 LER-------ARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSA 733
Query: 180 AYSHQRTFIMEVMG 193
A + R F++EV G
Sbjct: 734 AATRNRVFVVEVQG 747
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 766
Score = 199 bits (507), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 98/185 (52%), Positives = 131/185 (70%), Gaps = 1/185 (0%)
Query: 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGG-DNIVEANWSSVSSIIHKGGTVIG 69
+ GMN+ VRA VR I+ GC+ F + EGY+G+V GG + I E +W V +GGT IG
Sbjct: 15 APGMNSNVRAIVRSAIFKGCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIG 74
Query: 70 SARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSI 129
+ARC +F+++ GRL A++LI+ G+ L+V GGDGSLTGA+LFR EWP L+++LLK I
Sbjct: 75 TARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRI 134
Query: 130 TKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIM 189
+ +Q E+ HL+I G VGSIDND TD TIG SAL RI +AID + +TA SH R F++
Sbjct: 135 SNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAIDYVEATANSHSRAFVV 194
Query: 190 EVMGR 194
EVMGR
Sbjct: 195 EVMGR 199
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 24/194 (12%)
Query: 3 AQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 62
A VN + + G+N+AV + + G + + I G+ G+ +++ NW +
Sbjct: 397 AIVNVGAPAGGINSAVYSMATYCMSQGHRPYAIYNGWSGLARH-ESVRSLNWKDMLGWQS 455
Query: 63 KGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQ 122
+GG+ IG+ R + G + A L+++GG + E L Q
Sbjct: 456 RGGSEIGTNRVTPEEADLGMI--AYYFQKYEFDGLIIVGGFEAF-----------ESLHQ 502
Query: 123 LLKDGSITKDQREKYCHLHIAGLV--GSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTA 180
L + RE Y I ++ ++ N+ GT+ ++G+D+AL+ ++E D + +A
Sbjct: 503 LER-------ARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCDVVKQSA 555
Query: 181 YSHQ-RTFIMEVMG 193
S + R F+++ G
Sbjct: 556 SSTRGRAFVVDCQG 569
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 139 bits (351), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 108/185 (58%), Gaps = 27/185 (14%)
Query: 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
S GMNAA+R+ VR IY G +V+ + GY G++ G NI + V IIH+GGT++ +
Sbjct: 13 SPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAG--NIKKLEVGDVGDIIHRGGTILYT 70
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGAN-LFRQEWPELLDQLLKDGSI 129
ARC +F+ + G+ K + L GI LVVIGGDGS GA L +P
Sbjct: 71 ARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFP------------ 118
Query: 130 TKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIM 189
C G+ G+IDND GTD TIG D+AL+ +I+AID I TA SH+RT+++
Sbjct: 119 --------C----VGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTYVI 166
Query: 190 EVMGR 194
EVMGR
Sbjct: 167 EVMGR 171
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 139 bits (351), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 108/185 (58%), Gaps = 27/185 (14%)
Query: 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
S GMNAA+R+ VR IY G +V+ + GY G++ G NI + V IIH+GGT++ +
Sbjct: 13 SPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAG--NIKKLEVGDVGDIIHRGGTILYT 70
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGAN-LFRQEWPELLDQLLKDGSI 129
ARC +F+ + G+ K + L GI LVVIGGDGS GA L +P
Sbjct: 71 ARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEHGFP------------ 118
Query: 130 TKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIM 189
C G+ G+IDND GTD TIG D+AL+ +I+AID I TA SH+RT+++
Sbjct: 119 --------C----VGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTYVI 166
Query: 190 EVMGR 194
EVMGR
Sbjct: 167 EVMGR 171
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 105/185 (56%), Gaps = 27/185 (14%)
Query: 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
S GMNAAVRA VR IY +V+ I GY G++ G I + SV IIH+GGT + +
Sbjct: 13 SPGMNAAVRAVVRKAIYHDVEVYGIYNGYAGLISG--KIEKLELGSVGDIIHRGGTKLYT 70
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGAN-LFRQEWPELLDQLLKDGSI 129
ARC +F+ GR K NL GI LVVIGGDGS GA L +P
Sbjct: 71 ARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEHGFP------------ 118
Query: 130 TKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIM 189
C G+ G+IDND GTD TIG D+AL+ +I+AID I TA SH+RT+++
Sbjct: 119 --------C----VGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTYVI 166
Query: 190 EVMGR 194
EVMGR
Sbjct: 167 EVMGR 171
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 108/185 (58%), Gaps = 27/185 (14%)
Query: 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
S GMNAA+R+ VR IY G +V+ + GY G++ G NI + V IIH+GGT++ +
Sbjct: 13 SPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAG--NIKKLEVGDVGDIIHRGGTILYT 70
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGAN-LFRQEWPELLDQLLKDGSI 129
ARC +F+ + G+ K + L GI LVVIGGDGS GA L +P
Sbjct: 71 ARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEHGFP------------ 118
Query: 130 TKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIM 189
C G+ G+IDND GTD TIG D+AL+ +I+AID I TA SH+RT+++
Sbjct: 119 --------C----VGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTWVI 166
Query: 190 EVMGR 194
EVMGR
Sbjct: 167 EVMGR 171
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 27/185 (14%)
Query: 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
+ GMNAA+R VR + G +V I +GY G+ + D +V+ + SVS +I++GGT +GS
Sbjct: 14 APGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYE--DRMVQLDRYSVSDMINRGGTFLGS 71
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGA-NLFRQEWPELLDQLLKDGSI 129
AR +FR++ R A +NL RGI LVVIGGDGS GA L +P +
Sbjct: 72 ARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCI---------- 121
Query: 130 TKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIM 189
GL G+IDND GTD TIG +AL ++EAID + T+ SHQR ++
Sbjct: 122 --------------GLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQRISVV 167
Query: 190 EVMGR 194
EVMGR
Sbjct: 168 EVMGR 172
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 98/184 (53%), Gaps = 25/184 (13%)
Query: 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
+ GMNAAVRA R+ I G +VF I+ G+ G+V G +I V+ +I+ GT + S
Sbjct: 13 APGMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAG--DIFPLESEDVAHLINVSGTFLYS 70
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSIT 130
AR +F E+ G+L + L GI +VVIGGDGS GA QL + G
Sbjct: 71 ARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGAL-----------QLTRHG--- 116
Query: 131 KDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIME 190
+ GL G+IDND TD TIG D+A ++AID I TA SH R FI+
Sbjct: 117 ---------FNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASSHHRVFIVN 167
Query: 191 VMGR 194
VMGR
Sbjct: 168 VMGR 171
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 28/188 (14%)
Query: 12 TGMNAAVRACVRMGI--YLGCKVFFIKEGYQGMVD-GGDNIVEANWSSVSSIIHKGGTVI 68
G+N +R+ GI Y +V + GY G+ G +E + V++I H GGT++
Sbjct: 110 PGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTIL 169
Query: 69 GSAR-CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDG 127
GS+R D +E L+ G+ L +GGDG+ GA + QE
Sbjct: 170 GSSRGPQDPKEMVDTLERL------GVNILFTVGGDGTQRGALVISQE------------ 211
Query: 128 SITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTF 187
+ + + + G+ +IDND + T G +A+ + ++AI A + A S
Sbjct: 212 -----AKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGV 266
Query: 188 -IMEVMGR 194
++++MGR
Sbjct: 267 GVVKLMGR 274
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
Length = 420
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 144 GLVGSIDNDFCGTDMTIGTDSALHRI----IEAIDAIVSTAYSHQRTFIMEVMGR 194
G+ ++DND TD G S I +EA I S + + FI+EVMGR
Sbjct: 138 GVPKTVDNDLPFTDCCPGFGSVAKYIATSTLEASLDIKSMCETSTKVFILEVMGR 192
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 58 SSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR---- 113
+ I+ + G V+ R + EKA R L G N++VI GDG+L L
Sbjct: 96 AEIVGEDGLVVSIERIPELAEKAER-----TLRKLGYDNVIVIVGDGTLGYEPLAPYDRI 150
Query: 114 ------QEWPELLDQLLKDG 127
+ PE L + LKDG
Sbjct: 151 YTTAAGPKIPEPLIRQLKDG 170
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|D Chain D, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
Length = 419
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 148 SIDNDFCGTDMTIGTDSALHRI----IEAIDAIVSTAYSHQRTFIMEVMGR 194
++DND TD G S I +EA + S + + + F++EVMGR
Sbjct: 142 TVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATSTKVFVLEVMGR 192
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 30/171 (17%)
Query: 31 KVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLI 90
K+F K G G+++ ++ +E S ++S + GG I S+ + + KA
Sbjct: 106 KLFGFKGGPLGLLE--NDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAK 163
Query: 91 DRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSID 150
+ + +++IGGD S T A + L + K+G ++ + G+ +ID
Sbjct: 164 ENNLNAIIIIGGDDSNTNAAI-------LAEYFKKNGE----------NIQVIGVPKTID 206
Query: 151 NDFCG--TDMTIGTDSALHRIIEAI-----DAIVSTAYSHQRTFIMEVMGR 194
D +++ G DSA E I DA+ + Y H +++MGR
Sbjct: 207 ADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWH----FVKLMGR 253
>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
pdb|4A27|B Chain B, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
Length = 349
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 98 VVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLV---GSIDND 152
VV+ G G L LFR+ PE D LK R K C L+ L+ G+IDN
Sbjct: 7 VVLAGFGGLNKLRLFRKAMPEPQDGELK-------IRVKACGLNFIDLMVRQGNIDNP 57
>pdb|1IKQ|A Chain A, Pseudomonas Aeruginosa Exotoxin A, Wild Type
Length = 613
Score = 27.7 bits (60), Expect = 4.8, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 41 GMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVI 100
G D GD ++E N+ + + + GG V S R + L+A + L +RG V +
Sbjct: 381 GPADSGDALLERNYPTGAEFLGDGGDVSFSTRGTQNWTVERLLQAHRQLEERG---YVFV 437
Query: 101 GGDGSLTGA 109
G G+ A
Sbjct: 438 GYHGTFLEA 446
>pdb|1IKP|A Chain A, Pseudomonas Aeruginosa Exotoxin A, P201q, W281a Mutant
Length = 613
Score = 27.7 bits (60), Expect = 4.8, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 41 GMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVI 100
G D GD ++E N+ + + + GG V S R + L+A + L +RG V +
Sbjct: 381 GPADSGDALLERNYPTGAEFLGDGGDVSFSTRGTQNWTVERLLQAHRQLEERG---YVFV 437
Query: 101 GGDGSLTGA 109
G G+ A
Sbjct: 438 GYHGTFLEA 446
>pdb|3NMU|A Chain A, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|B Chain B, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVI|A Chain A, Structure Of N-Terminal Truncated Nop5658 BOUND WITH L7AE
AND BOX CD Rna
pdb|3NVI|C Chain C, Structure Of N-Terminal Truncated Nop5658 BOUND WITH L7AE
AND BOX CD Rna
Length = 379
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 87 KNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQRE 135
K I + + +G+L F + ++LDQLLK G ITKD E
Sbjct: 12 KAFISENVRGIYAFDENGNLIEKRYFTDKPEKVLDQLLK-GEITKDLEE 59
>pdb|2NNW|A Chain A, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|2NNW|C Chain C, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
Length = 376
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 87 KNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQRE 135
K I + + +G+L F + ++LDQLLK G ITKD E
Sbjct: 12 KAFISENVRGIYAFDENGNLIEKRYFTDKPEKVLDQLLK-GEITKDLEE 59
>pdb|3NVM|A Chain A, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 371
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 87 KNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQRE 135
K I + + +G+L F + ++LDQLLK G ITKD E
Sbjct: 12 KAFISENVRGIYAFDENGNLIEKRYFTDKPEKVLDQLLK-GEITKDLEE 59
>pdb|3NVK|A Chain A, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|F Chain F, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 376
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 87 KNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQRE 135
K I + + +G+L F + ++LDQLLK G ITKD E
Sbjct: 12 KAFISENVRGIYAFDENGNLIEKRYFTDKPEKVLDQLLK-GEITKDLEE 59
>pdb|1RUS|A Chain A, Crystal Structure Of The Binary Complex Of Ribulose-1,5-
Bisphosphate Carboxylase And Its Product, 3-Phospho-D-
Glycerate
pdb|1RUS|B Chain B, Crystal Structure Of The Binary Complex Of Ribulose-1,5-
Bisphosphate Carboxylase And Its Product, 3-Phospho-D-
Glycerate
pdb|2RUS|A Chain A, Crystal Structure Of The Ternary Complex Of Ribulose-1,5-
Bisphosphate Carboxylase, Mg(Ii), And Activator Co2 At
2.3- Angstroms Resolution
pdb|2RUS|B Chain B, Crystal Structure Of The Ternary Complex Of Ribulose-1,5-
Bisphosphate Carboxylase, Mg(Ii), And Activator Co2 At
2.3- Angstroms Resolution
pdb|5RUB|A Chain A, Crystallographic Refinement And Structure Of Ribulose-1,5-
Bisphosphate Carboxylase From Rhodospirillum Rubrum At
1.7 Angstroms Resolution
pdb|5RUB|B Chain B, Crystallographic Refinement And Structure Of Ribulose-1,5-
Bisphosphate Carboxylase From Rhodospirillum Rubrum At
1.7 Angstroms Resolution
Length = 490
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 33 FFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
F++ E Y+ + DG + A W + GG V+G+
Sbjct: 150 FYVPEAYRALFDGPSVNISALWKVLGRPEVDGGLVVGT 187
>pdb|9RUB|A Chain A, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
Carboxylase Complexed With Its Substrate, Ribulose-1,5-
Bisphosphate
pdb|9RUB|B Chain B, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
Carboxylase Complexed With Its Substrate, Ribulose-1,5-
Bisphosphate
Length = 466
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 33 FFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
F++ E Y+ + DG + A W + GG V+G+
Sbjct: 126 FYVPEAYRALFDGPSVNISALWKVLGRPEVDGGLVVGT 163
>pdb|1RBA|A Chain A, Substitution Of Asp193 To Asn At The Active Site Of
Ribulose-1,5- Bisphosphate Carboxylase Results In
Conformational Changes
pdb|1RBA|B Chain B, Substitution Of Asp193 To Asn At The Active Site Of
Ribulose-1,5- Bisphosphate Carboxylase Results In
Conformational Changes
Length = 466
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 33 FFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
F++ E Y+ + DG + A W + GG V+G+
Sbjct: 126 FYVPEAYRALFDGPSVNISALWKVLGRPEVDGGLVVGT 163
>pdb|1ZNN|A Chain A, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|B Chain B, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|C Chain C, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|D Chain D, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|E Chain E, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|F Chain F, Structure Of The Synthase Subunit Of Plp Synthase
Length = 325
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 100 IGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHL 140
+G DG G+ +F+ E PE + + + + + E HL
Sbjct: 258 LGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHL 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,714,954
Number of Sequences: 62578
Number of extensions: 240369
Number of successful extensions: 817
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 41
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)