Query psy5987
Match_columns 197
No_of_seqs 105 out of 1037
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 23:40:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00764 Eukaryotic_PFK Phospho 100.0 5.5E-60 1.2E-64 452.7 22.2 195 2-196 6-200 (762)
2 TIGR02478 6PF1K_euk 6-phosphof 100.0 1.2E-59 2.7E-64 451.0 22.4 195 2-196 3-197 (745)
3 TIGR02482 PFKA_ATP 6-phosphofr 100.0 2E-59 4.3E-64 410.2 19.8 171 2-196 2-172 (301)
4 PF00365 PFK: Phosphofructokin 100.0 4.1E-59 8.9E-64 405.1 17.6 171 2-196 3-173 (282)
5 cd00763 Bacterial_PFK Phosphof 100.0 8.8E-59 1.9E-63 408.7 19.8 170 2-196 3-172 (317)
6 COG0205 PfkA 6-phosphofructoki 100.0 6.6E-59 1.4E-63 412.3 19.1 171 2-196 5-175 (347)
7 cd00363 PFK Phosphofructokinas 100.0 1E-58 2.2E-63 411.6 19.7 176 2-196 3-178 (338)
8 PRK03202 6-phosphofructokinase 100.0 4E-58 8.6E-63 405.0 19.3 170 2-196 4-173 (320)
9 TIGR02483 PFK_mixed phosphofru 100.0 2.1E-57 4.5E-62 401.1 19.2 170 2-196 2-174 (324)
10 PRK14072 6-phosphofructokinase 100.0 2.8E-56 6E-61 405.1 19.8 175 2-196 6-192 (416)
11 PLN02884 6-phosphofructokinase 100.0 1E-55 2.2E-60 400.2 19.4 173 2-196 56-230 (411)
12 PRK14071 6-phosphofructokinase 100.0 4.1E-55 8.9E-60 391.2 19.7 173 2-196 7-188 (360)
13 PRK06830 diphosphate--fructose 100.0 1.3E-54 2.9E-59 395.6 19.4 171 2-196 83-259 (443)
14 PLN02564 6-phosphofructokinase 100.0 1.3E-54 2.7E-59 397.9 19.3 171 2-196 90-263 (484)
15 PRK06555 pyrophosphate--fructo 100.0 2.2E-54 4.7E-59 389.5 19.7 176 2-196 6-199 (403)
16 PTZ00286 6-phospho-1-fructokin 100.0 2.8E-54 6.2E-59 395.1 19.2 171 2-196 90-263 (459)
17 TIGR02477 PFKA_PPi diphosphate 100.0 1.6E-53 3.4E-58 396.5 20.3 175 2-196 70-250 (539)
18 PRK07085 diphosphate--fructose 100.0 4.2E-53 9E-58 394.5 20.0 175 2-196 73-253 (555)
19 PLN03028 pyrophosphate--fructo 100.0 6.1E-53 1.3E-57 396.0 20.0 175 2-196 82-262 (610)
20 PLN02251 pyrophosphate-depende 100.0 7.9E-53 1.7E-57 392.7 20.1 175 2-196 99-279 (568)
21 cd00765 Pyrophosphate_PFK Phos 100.0 9.7E-53 2.1E-57 391.2 20.2 175 2-196 75-255 (550)
22 cd00764 Eukaryotic_PFK Phospho 100.0 1.5E-52 3.3E-57 401.4 19.4 172 2-196 392-566 (762)
23 TIGR02478 6PF1K_euk 6-phosphof 100.0 2.5E-52 5.5E-57 400.5 19.3 174 2-196 392-566 (745)
24 PTZ00468 phosphofructokinase f 100.0 6.5E-50 1.4E-54 394.0 20.3 175 2-196 105-285 (1328)
25 PTZ00287 6-phosphofructokinase 100.0 1.2E-48 2.6E-53 387.2 20.0 175 2-196 180-360 (1419)
26 PTZ00287 6-phosphofructokinase 100.0 2.3E-48 5E-53 385.2 20.1 174 2-196 839-1017(1419)
27 PTZ00468 phosphofructokinase f 100.0 5.5E-42 1.2E-46 338.1 18.8 176 2-196 678-894 (1328)
28 KOG2440|consensus 100.0 2.3E-34 4.9E-39 270.2 7.8 191 4-196 1-191 (666)
29 KOG2440|consensus 99.9 3.3E-22 7.2E-27 188.4 11.0 175 2-196 375-550 (666)
30 PRK14077 pnk inorganic polypho 95.3 0.074 1.6E-06 46.7 7.4 56 93-180 64-121 (287)
31 PRK00561 ppnK inorganic polyph 94.7 0.2 4.2E-06 43.6 8.3 63 82-176 17-87 (259)
32 PRK04761 ppnK inorganic polyph 94.6 0.15 3.2E-06 44.0 7.5 65 81-177 7-80 (246)
33 cd06321 PBP1_ABC_sugar_binding 94.3 2.6 5.7E-05 34.8 15.2 126 1-190 1-128 (271)
34 PLN02929 NADH kinase 94.1 0.2 4.3E-06 44.4 7.2 64 93-179 64-137 (301)
35 PRK04885 ppnK inorganic polyph 94.0 0.29 6.4E-06 42.5 8.0 68 82-179 17-93 (265)
36 cd01537 PBP1_Repressors_Sugar_ 93.7 3 6.5E-05 33.5 14.7 123 2-190 2-125 (264)
37 PF01513 NAD_kinase: ATP-NAD k 93.3 0.072 1.6E-06 46.3 3.1 60 87-178 70-131 (285)
38 COG3199 Predicted inorganic po 93.2 0.2 4.3E-06 45.2 5.6 54 78-154 85-138 (355)
39 PRK03501 ppnK inorganic polyph 92.8 0.57 1.2E-05 40.7 7.9 56 94-179 40-97 (264)
40 PRK14075 pnk inorganic polypho 92.8 0.59 1.3E-05 40.3 7.9 51 93-178 41-93 (256)
41 PRK01911 ppnK inorganic polyph 92.7 0.31 6.7E-06 42.9 6.1 57 93-181 64-122 (292)
42 PRK04539 ppnK inorganic polyph 92.6 0.27 5.9E-06 43.4 5.7 55 93-179 68-124 (296)
43 PRK03378 ppnK inorganic polyph 91.9 0.47 1E-05 41.8 6.3 54 93-178 63-118 (292)
44 PRK02649 ppnK inorganic polyph 91.6 0.4 8.7E-06 42.5 5.5 55 93-179 68-124 (305)
45 PRK03708 ppnK inorganic polyph 91.3 0.44 9.6E-06 41.6 5.5 43 92-167 56-98 (277)
46 PRK03372 ppnK inorganic polyph 91.2 0.43 9.3E-06 42.4 5.3 56 93-180 72-129 (306)
47 PRK14076 pnk inorganic polypho 91.0 1 2.2E-05 43.2 8.0 55 93-179 348-404 (569)
48 PLN02935 Bifunctional NADH kin 90.5 0.6 1.3E-05 44.2 5.9 55 93-179 262-318 (508)
49 PRK01231 ppnK inorganic polyph 90.5 0.64 1.4E-05 40.9 5.8 56 93-180 62-119 (295)
50 cd08550 GlyDH-like Glycerol_de 90.4 2.9 6.2E-05 37.3 10.0 54 78-153 62-115 (349)
51 cd06299 PBP1_LacI_like_13 Liga 90.2 9.1 0.0002 31.2 14.6 68 1-106 1-68 (265)
52 cd06292 PBP1_LacI_like_10 Liga 89.7 10 0.00022 31.2 14.1 65 1-103 1-65 (273)
53 cd06284 PBP1_LacI_like_6 Ligan 89.0 11 0.00024 30.6 15.1 67 1-105 1-67 (267)
54 cd08173 Gro1PDH Sn-glycerol-1- 89.0 1.3 2.7E-05 39.4 6.5 56 78-155 63-118 (339)
55 cd08170 GlyDH Glycerol dehydro 88.5 1.4 3E-05 39.2 6.4 54 78-153 62-115 (351)
56 cd06298 PBP1_CcpA_like Ligand- 88.3 13 0.00027 30.4 14.9 66 2-105 2-67 (268)
57 PRK02231 ppnK inorganic polyph 88.3 1 2.2E-05 39.3 5.4 54 93-178 42-97 (272)
58 cd08171 GlyDH-like2 Glycerol d 87.8 6 0.00013 35.2 10.1 101 18-149 11-112 (345)
59 cd06283 PBP1_RegR_EndR_KdgR_li 87.8 13 0.00029 30.1 14.4 67 1-105 1-67 (267)
60 PRK09423 gldA glycerol dehydro 87.7 3.2 6.9E-05 37.3 8.3 54 78-153 69-122 (366)
61 PRK02155 ppnK NAD(+)/NADH kina 87.6 1.4 3.1E-05 38.6 5.9 54 93-178 63-118 (291)
62 cd08172 GlyDH-like1 Glycerol d 87.5 1.6 3.4E-05 38.9 6.2 53 78-152 61-113 (347)
63 PRK11914 diacylglycerol kinase 87.5 1.4 3.1E-05 38.3 5.8 61 79-164 50-110 (306)
64 cd08195 DHQS Dehydroquinate sy 87.4 0.9 2E-05 40.5 4.6 53 77-149 66-121 (345)
65 PRK02645 ppnK inorganic polyph 87.3 1.1 2.4E-05 39.6 5.0 56 93-179 57-115 (305)
66 PF00465 Fe-ADH: Iron-containi 87.1 1.2 2.6E-05 39.8 5.3 67 78-152 63-134 (366)
67 COG0061 nadF NAD kinase [Coenz 86.8 1.6 3.5E-05 38.0 5.7 57 92-182 54-110 (281)
68 PRK00843 egsA NAD(P)-dependent 86.7 2.1 4.5E-05 38.3 6.5 55 77-153 71-125 (350)
69 PRK00002 aroB 3-dehydroquinate 86.7 1.6 3.5E-05 39.0 5.8 52 78-149 74-128 (358)
70 cd08177 MAR Maleylacetate redu 86.5 1.8 4E-05 38.4 6.0 52 78-151 62-113 (337)
71 PRK01185 ppnK inorganic polyph 86.5 2 4.3E-05 37.5 6.1 53 93-180 52-106 (271)
72 cd07766 DHQ_Fe-ADH Dehydroquin 86.5 1.9 4.1E-05 37.8 6.1 55 78-152 63-117 (332)
73 cd08199 EEVS 2-epi-5-epi-valio 86.4 1.6 3.4E-05 39.3 5.6 68 77-167 68-139 (354)
74 TIGR01357 aroB 3-dehydroquinat 86.2 2.6 5.6E-05 37.4 6.8 52 78-149 63-117 (344)
75 cd08180 PDD 1,3-propanediol de 85.7 2.6 5.5E-05 37.3 6.5 58 78-150 63-120 (332)
76 cd08197 DOIS 2-deoxy-scyllo-in 85.7 2.2 4.7E-05 38.5 6.1 65 78-165 66-133 (355)
77 cd08551 Fe-ADH iron-containing 85.7 1.9 4E-05 38.6 5.7 68 78-152 65-135 (370)
78 cd08178 AAD_C C-terminal alcoh 84.7 3.5 7.7E-05 37.4 7.1 36 78-113 63-98 (398)
79 cd01542 PBP1_TreR_like Ligand- 84.5 20 0.00044 29.0 14.8 66 2-105 2-67 (259)
80 PF00532 Peripla_BP_1: Peripla 84.5 25 0.00054 30.1 14.7 122 1-189 3-125 (279)
81 PRK10703 DNA-binding transcrip 84.3 26 0.00056 30.1 14.7 28 79-106 101-128 (341)
82 PLN02727 NAD kinase 84.0 1.6 3.5E-05 44.2 4.8 55 93-179 743-799 (986)
83 cd08189 Fe-ADH5 Iron-containin 83.5 4 8.7E-05 36.7 6.9 36 78-113 68-103 (374)
84 COG0371 GldA Glycerol dehydrog 83.4 2.5 5.5E-05 38.4 5.5 58 78-157 69-126 (360)
85 PF07905 PucR: Purine cataboli 83.4 11 0.00024 28.5 8.3 71 28-102 10-81 (123)
86 PRK13054 lipid kinase; Reviewe 83.3 3.3 7.1E-05 36.0 6.1 29 81-109 44-72 (300)
87 cd08185 Fe-ADH1 Iron-containin 83.1 14 0.00031 33.2 10.3 36 78-113 68-103 (380)
88 PRK10423 transcriptional repre 82.8 28 0.00062 29.5 13.1 26 80-105 99-124 (327)
89 cd07995 TPK Thiamine pyrophosp 82.7 7.5 0.00016 32.1 7.7 103 3-114 1-110 (208)
90 cd08196 DHQS-like1 Dehydroquin 82.6 2.6 5.7E-05 37.9 5.3 70 76-168 56-128 (346)
91 PRK13951 bifunctional shikimat 82.6 1.5 3.3E-05 41.2 3.9 114 29-168 171-289 (488)
92 cd08194 Fe-ADH6 Iron-containin 82.0 4 8.7E-05 36.7 6.3 36 78-113 65-100 (375)
93 PLN02958 diacylglycerol kinase 81.6 9.4 0.0002 35.9 8.7 101 30-155 112-215 (481)
94 cd08193 HVD 5-hydroxyvalerate 81.4 5.8 0.00013 35.7 7.1 66 78-149 68-135 (376)
95 PLN02834 3-dehydroquinate synt 81.2 4.5 9.8E-05 37.5 6.4 52 78-149 145-199 (433)
96 cd06278 PBP1_LacI_like_2 Ligan 80.8 28 0.00061 28.2 12.4 66 1-105 1-66 (266)
97 cd08181 PPD-like 1,3-propanedi 80.7 4.2 9.1E-05 36.4 5.9 65 78-149 68-134 (357)
98 PRK10586 putative oxidoreducta 80.6 3.5 7.5E-05 37.3 5.3 61 79-162 73-133 (362)
99 PRK15408 autoinducer 2-binding 80.4 41 0.00088 29.7 14.3 24 80-103 67-90 (336)
100 PRK15454 ethanol dehydrogenase 80.1 3.9 8.5E-05 37.3 5.5 36 78-113 91-126 (395)
101 TIGR02638 lactal_redase lactal 80.0 6.6 0.00014 35.5 6.9 36 78-113 71-106 (379)
102 cd01575 PBP1_GntR Ligand-bindi 79.9 31 0.00066 28.0 15.5 67 1-105 1-67 (268)
103 PRK14987 gluconate operon tran 79.9 37 0.00081 29.0 14.7 23 81-103 107-129 (331)
104 cd08179 NADPH_BDH NADPH-depend 79.7 6.1 0.00013 35.6 6.6 36 78-113 66-101 (375)
105 cd08175 G1PDH Glycerol-1-phosp 79.7 4.5 9.8E-05 35.9 5.7 49 78-149 66-114 (348)
106 COG1454 EutG Alcohol dehydroge 79.4 7.4 0.00016 35.7 7.0 66 78-149 71-138 (377)
107 PRK09860 putative alcohol dehy 79.4 6.7 0.00014 35.6 6.8 65 78-149 73-140 (383)
108 PRK10355 xylF D-xylose transpo 79.2 43 0.00093 29.2 12.2 25 79-103 67-91 (330)
109 KOG4180|consensus 79.1 1.8 4E-05 39.0 3.0 62 49-110 44-122 (395)
110 cd08186 Fe-ADH8 Iron-containin 79.1 7.4 0.00016 35.2 7.0 37 78-114 69-105 (383)
111 cd06281 PBP1_LacI_like_5 Ligan 79.1 34 0.00074 28.0 15.1 66 1-104 1-66 (269)
112 PRK13055 putative lipid kinase 78.4 6.2 0.00013 35.0 6.1 28 82-109 48-75 (334)
113 cd08176 LPO Lactadehyde:propan 78.0 4.6 9.9E-05 36.4 5.3 36 78-113 70-105 (377)
114 PRK13337 putative lipid kinase 77.2 4.8 0.0001 35.0 5.0 30 81-110 45-74 (304)
115 PRK15138 aldehyde reductase; P 77.2 8.9 0.00019 34.9 6.9 36 78-113 70-105 (387)
116 cd06282 PBP1_GntR_like_2 Ligan 76.9 38 0.00082 27.4 14.7 65 2-104 2-66 (266)
117 cd06320 PBP1_allose_binding Pe 76.8 40 0.00087 27.6 14.3 66 2-103 2-67 (275)
118 cd08182 HEPD Hydroxyethylphosp 76.7 8 0.00017 34.6 6.5 37 78-114 62-98 (367)
119 PRK13057 putative lipid kinase 76.5 8 0.00017 33.3 6.2 52 54-109 15-66 (287)
120 COG2910 Putative NADH-flavin r 76.5 11 0.00023 31.7 6.6 98 2-109 3-112 (211)
121 cd08183 Fe-ADH2 Iron-containin 76.4 8 0.00017 34.8 6.4 36 78-113 60-95 (374)
122 cd08549 G1PDH_related Glycerol 75.7 8.4 0.00018 34.1 6.3 52 78-152 66-117 (332)
123 COG2515 Acd 1-aminocyclopropan 75.0 48 0.001 29.8 10.6 124 4-151 67-219 (323)
124 cd08192 Fe-ADH7 Iron-containin 74.4 9.9 0.00022 34.0 6.5 36 78-113 66-101 (370)
125 cd01574 PBP1_LacI Ligand-bindi 74.1 46 0.00099 27.0 14.6 69 1-106 1-69 (264)
126 PF04405 ScdA_N: Domain of Unk 73.7 3.3 7.3E-05 27.6 2.4 27 82-110 12-38 (56)
127 cd08190 HOT Hydroxyacid-oxoaci 73.6 8.3 0.00018 35.3 5.8 36 78-113 65-100 (414)
128 cd06310 PBP1_ABC_sugar_binding 73.5 49 0.0011 27.0 14.8 67 2-104 2-68 (273)
129 PRK10624 L-1,2-propanediol oxi 73.5 13 0.00029 33.5 7.0 36 78-113 72-107 (382)
130 PRK00861 putative lipid kinase 73.5 5 0.00011 34.8 4.2 29 81-109 45-73 (300)
131 cd01538 PBP1_ABC_xylose_bindin 73.3 54 0.0012 27.4 14.0 66 2-105 2-67 (288)
132 TIGR03405 Phn_Fe-ADH phosphona 73.3 14 0.00031 33.0 7.1 36 78-113 63-100 (355)
133 cd06305 PBP1_methylthioribose_ 72.9 50 0.0011 26.9 15.3 65 2-104 2-66 (273)
134 cd08184 Fe-ADH3 Iron-containin 72.8 25 0.00053 31.6 8.5 36 78-113 63-101 (347)
135 cd08169 DHQ-like Dehydroquinat 72.4 12 0.00027 33.4 6.5 68 77-167 64-134 (344)
136 cd08174 G1PDH-like Glycerol-1- 72.1 9.5 0.00021 33.6 5.7 56 79-156 60-116 (331)
137 PF14639 YqgF: Holliday-juncti 71.8 13 0.00029 29.5 5.9 85 79-178 49-141 (150)
138 TIGR01162 purE phosphoribosyla 71.7 12 0.00027 30.1 5.7 49 78-149 38-86 (156)
139 cd08187 BDH Butanol dehydrogen 71.6 12 0.00027 33.7 6.4 67 78-151 71-140 (382)
140 TIGR03702 lip_kinase_YegS lipi 71.2 9 0.00019 33.1 5.2 30 81-110 40-69 (293)
141 KOG1116|consensus 70.4 9.2 0.0002 36.9 5.4 69 80-163 223-292 (579)
142 cd08188 Fe-ADH4 Iron-containin 70.3 15 0.00032 33.1 6.6 36 78-113 70-105 (377)
143 PRK13059 putative lipid kinase 70.1 9.2 0.0002 33.2 5.0 45 90-154 53-97 (295)
144 TIGR00147 lipid kinase, YegS/R 68.9 9.5 0.00021 32.7 4.9 25 86-110 50-74 (293)
145 PRK14021 bifunctional shikimat 68.1 6.5 0.00014 37.5 4.0 64 79-165 252-318 (542)
146 cd06291 PBP1_Qymf_like Ligand 68.1 64 0.0014 26.2 13.9 67 1-105 1-67 (265)
147 PF13407 Peripla_BP_4: Peripla 67.7 65 0.0014 26.1 14.6 125 2-189 1-128 (257)
148 cd08191 HHD 6-hydroxyhexanoate 67.0 14 0.0003 33.5 5.7 63 79-148 65-130 (386)
149 cd06323 PBP1_ribose_binding Pe 66.9 66 0.0014 26.0 14.2 63 1-101 1-63 (268)
150 PRK06203 aroB 3-dehydroquinate 66.7 14 0.0003 33.8 5.6 65 80-167 95-162 (389)
151 cd08198 DHQS-like2 Dehydroquin 66.5 13 0.00028 33.9 5.4 66 80-168 83-151 (369)
152 cd06290 PBP1_LacI_like_9 Ligan 65.9 71 0.0015 25.9 14.8 65 1-103 1-65 (265)
153 cd01844 SGNH_hydrolase_like_6 65.7 62 0.0014 25.2 10.7 50 86-146 50-100 (177)
154 TIGR00732 dprA DNA protecting 65.6 81 0.0018 26.5 10.5 70 53-151 116-193 (220)
155 cd04506 SGNH_hydrolase_YpmR_li 64.6 69 0.0015 25.3 10.1 48 93-146 68-128 (204)
156 TIGR02417 fruct_sucro_rep D-fr 64.5 89 0.0019 26.5 15.0 25 80-104 103-127 (327)
157 TIGR01378 thi_PPkinase thiamin 64.4 36 0.00079 28.0 7.3 79 31-113 20-105 (203)
158 PF13685 Fe-ADH_2: Iron-contai 64.3 6.5 0.00014 33.9 2.9 55 78-154 60-114 (250)
159 PF00781 DAGK_cat: Diacylglyce 64.1 8.9 0.00019 28.9 3.4 66 82-168 42-108 (130)
160 TIGR03186 AKGDH_not_PDH alpha- 64.1 7 0.00015 39.7 3.4 97 6-108 260-366 (889)
161 cd01831 Endoglucanase_E_like E 64.1 27 0.00058 27.1 6.2 40 97-146 60-103 (169)
162 cd06315 PBP1_ABC_sugar_binding 63.7 85 0.0019 26.1 14.8 64 2-103 3-66 (280)
163 PRK13805 bifunctional acetalde 63.1 26 0.00057 35.2 7.3 36 78-113 524-559 (862)
164 PRK12361 hypothetical protein; 62.7 13 0.00028 35.2 4.8 29 81-109 285-313 (547)
165 TIGR00759 aceE pyruvate dehydr 62.4 8.3 0.00018 39.0 3.6 99 6-108 260-366 (885)
166 COG1609 PurR Transcriptional r 61.8 1.1E+02 0.0025 26.8 12.2 31 67-101 92-122 (333)
167 PF00731 AIRC: AIR carboxylase 60.2 17 0.00037 29.1 4.4 48 78-148 40-87 (150)
168 cd06301 PBP1_rhizopine_binding 60.0 94 0.002 25.3 15.0 66 1-104 1-67 (272)
169 COG1597 LCB5 Sphingosine kinas 58.7 24 0.00052 31.0 5.5 110 31-175 4-117 (301)
170 smart00046 DAGKc Diacylglycero 58.7 13 0.00027 28.1 3.3 45 93-154 49-93 (124)
171 TIGR01752 flav_long flavodoxin 58.3 27 0.00058 27.6 5.3 34 2-35 81-117 (167)
172 COG1105 FruK Fructose-1-phosph 58.1 1.2E+02 0.0026 27.1 9.8 95 3-108 132-230 (310)
173 cd06272 PBP1_hexuronate_repres 57.4 1E+02 0.0022 24.9 14.3 35 1-35 1-35 (261)
174 PRK13012 2-oxoacid dehydrogena 57.0 12 0.00026 38.1 3.6 102 7-112 275-384 (896)
175 cd06295 PBP1_CelR Ligand bindi 56.9 1.1E+02 0.0023 25.0 14.1 23 83-105 54-76 (275)
176 cd01391 Periplasmic_Binding_Pr 56.6 93 0.002 24.2 8.6 28 80-107 45-72 (269)
177 PF01761 DHQ_synthase: 3-dehyd 56.0 27 0.00059 30.2 5.3 68 77-167 10-80 (260)
178 TIGR01481 ccpA catabolite cont 56.0 1.3E+02 0.0027 25.6 14.9 24 80-103 102-125 (329)
179 cd06270 PBP1_GalS_like Ligand 54.7 1.2E+02 0.0025 24.7 14.7 33 1-33 1-33 (268)
180 cd06275 PBP1_PurR Ligand-bindi 54.4 1.2E+02 0.0025 24.6 15.3 67 1-105 1-67 (269)
181 PRK09284 thiamine biosynthesis 54.3 23 0.0005 34.2 4.9 134 18-168 297-461 (607)
182 cd04502 SGNH_hydrolase_like_7 53.9 99 0.0021 23.7 8.0 49 87-145 44-95 (171)
183 PLN02444 HMP-P synthase 53.8 26 0.00056 34.0 5.1 134 18-168 302-466 (642)
184 TIGR01918 various_sel_PB selen 53.2 50 0.0011 30.9 6.8 31 80-110 323-353 (431)
185 cd06274 PBP1_FruR Ligand bindi 51.9 1.3E+02 0.0028 24.4 15.0 65 2-104 2-66 (264)
186 TIGR00190 thiC thiamine biosyn 51.7 24 0.00052 32.8 4.4 133 21-169 145-309 (423)
187 cd06307 PBP1_uncharacterized_s 51.3 1.3E+02 0.0029 24.5 13.7 24 80-104 46-69 (275)
188 PF07131 DUF1382: Protein of u 51.3 28 0.0006 23.7 3.6 37 138-183 22-58 (61)
189 PF00710 Asparaginase: Asparag 51.2 1.7E+02 0.0037 25.7 10.8 35 78-112 55-91 (313)
190 TIGR01917 gly_red_sel_B glycin 51.0 62 0.0014 30.3 7.0 29 81-109 324-352 (431)
191 KOG1838|consensus 50.1 1E+02 0.0023 28.6 8.4 74 16-115 141-215 (409)
192 PF04263 TPK_catalytic: Thiami 49.8 1.1E+02 0.0024 23.3 7.3 87 22-113 9-103 (123)
193 PRK05670 anthranilate synthase 49.7 37 0.00081 27.3 4.9 21 90-110 40-60 (189)
194 PRK10401 DNA-binding transcrip 49.5 1.7E+02 0.0037 25.1 14.0 24 80-103 102-125 (346)
195 TIGR02634 xylF D-xylose ABC tr 48.7 1.7E+02 0.0036 24.8 13.6 25 80-104 41-65 (302)
196 cd06322 PBP1_ABC_sugar_binding 48.6 1.4E+02 0.0031 24.1 13.8 65 1-103 1-65 (267)
197 cd01744 GATase1_CPSase Small c 47.9 34 0.00073 27.3 4.4 43 3-45 42-85 (178)
198 cd06273 PBP1_GntR_like_1 This 47.7 1.5E+02 0.0032 24.0 15.4 25 81-105 43-67 (268)
199 cd06296 PBP1_CatR_like Ligand- 46.8 1.5E+02 0.0034 23.9 15.2 66 2-105 2-67 (270)
200 PLN02204 diacylglycerol kinase 46.4 36 0.00077 33.2 4.9 69 30-109 160-234 (601)
201 cd06293 PBP1_LacI_like_11 Liga 46.1 1.6E+02 0.0035 23.9 15.3 63 2-102 2-64 (269)
202 TIGR01769 GGGP geranylgeranylg 45.7 1E+02 0.0023 25.7 7.1 61 80-157 11-71 (205)
203 PLN02714 thiamin pyrophosphoki 45.6 1.4E+02 0.0031 25.1 8.1 101 3-114 1-129 (229)
204 COG0504 PyrG CTP synthase (UTP 45.5 27 0.00059 33.3 3.9 97 48-175 296-395 (533)
205 TIGR00215 lpxB lipid-A-disacch 45.3 86 0.0019 28.2 7.1 89 4-104 8-100 (385)
206 PRK12756 phospho-2-dehydro-3-d 44.8 1.7E+02 0.0037 26.7 8.7 136 31-177 180-345 (348)
207 PLN02335 anthranilate synthase 44.8 51 0.0011 27.6 5.1 22 89-110 58-79 (222)
208 KOG4435|consensus 44.2 42 0.00091 31.5 4.8 30 79-109 103-132 (535)
209 cd06317 PBP1_ABC_sugar_binding 43.9 1.7E+02 0.0037 23.6 15.6 66 1-104 1-67 (275)
210 COG0796 MurI Glutamate racemas 43.8 63 0.0014 28.4 5.6 28 82-109 56-83 (269)
211 PRK12822 phospho-2-dehydro-3-d 43.5 1.7E+02 0.0037 26.7 8.5 136 31-177 181-345 (356)
212 PRK10014 DNA-binding transcrip 43.3 2.1E+02 0.0045 24.4 15.1 25 80-104 107-131 (342)
213 KOG3857|consensus 43.2 55 0.0012 30.2 5.3 36 78-113 112-147 (465)
214 PRK05637 anthranilate synthase 42.3 77 0.0017 26.3 5.8 25 88-112 39-63 (208)
215 PF04122 CW_binding_2: Putativ 42.2 36 0.00077 24.0 3.3 39 63-108 49-87 (92)
216 PRK13352 thiamine biosynthesis 42.1 38 0.00083 31.6 4.2 133 21-169 148-312 (431)
217 COG3494 Uncharacterized protei 42.0 91 0.002 27.4 6.3 25 80-104 55-79 (279)
218 cd06167 LabA_like LabA_like pr 42.0 60 0.0013 24.5 4.8 26 84-109 90-115 (149)
219 cd06280 PBP1_LacI_like_4 Ligan 42.0 1.9E+02 0.0041 23.5 11.4 33 1-33 1-33 (263)
220 cd06277 PBP1_LacI_like_1 Ligan 41.1 1.9E+02 0.0042 23.4 9.1 23 82-104 47-69 (268)
221 PRK09526 lacI lac repressor; R 40.8 2.3E+02 0.0049 24.1 12.4 23 80-102 107-129 (342)
222 cd06271 PBP1_AglR_RafR_like Li 40.7 1.9E+02 0.0041 23.2 9.5 21 84-104 50-70 (268)
223 cd01536 PBP1_ABC_sugar_binding 40.6 1.9E+02 0.004 23.1 14.3 65 1-103 1-65 (267)
224 PRK14462 ribosomal RNA large s 40.6 2.8E+02 0.0061 25.1 10.4 100 3-115 163-287 (356)
225 PRK09405 aceE pyruvate dehydro 40.5 24 0.00052 35.9 2.9 98 7-108 267-372 (891)
226 PLN02821 1-hydroxy-2-methyl-2- 39.8 87 0.0019 29.6 6.2 31 80-110 349-379 (460)
227 cd06279 PBP1_LacI_like_3 Ligan 39.0 2.2E+02 0.0048 23.5 13.8 35 1-35 1-40 (283)
228 cd01828 sialate_O-acetylestera 38.9 1.7E+02 0.0038 22.2 8.2 45 91-145 46-93 (169)
229 PRK01045 ispH 4-hydroxy-3-meth 38.9 1.1E+02 0.0024 27.1 6.5 31 81-112 199-229 (298)
230 PF04208 MtrA: Tetrahydrometha 38.6 57 0.0012 26.8 4.3 45 64-112 41-87 (176)
231 cd01744 GATase1_CPSase Small c 38.3 88 0.0019 24.9 5.4 19 90-108 36-54 (178)
232 cd01545 PBP1_SalR Ligand-bindi 38.2 2.1E+02 0.0046 23.0 14.3 66 2-104 2-67 (270)
233 PF02844 GARS_N: Phosphoribosy 38.2 30 0.00065 25.8 2.4 29 79-108 48-76 (100)
234 PRK10936 TMAO reductase system 37.9 2.7E+02 0.0059 24.2 15.2 24 80-103 91-114 (343)
235 TIGR00566 trpG_papA glutamine 37.5 69 0.0015 25.8 4.7 22 88-109 38-59 (188)
236 PF00571 CBS: CBS domain CBS d 37.4 51 0.0011 20.4 3.2 31 78-108 14-44 (57)
237 cd06302 PBP1_LsrB_Quorum_Sensi 37.3 2.5E+02 0.0054 23.6 15.0 65 2-103 2-66 (298)
238 PF02633 Creatininase: Creatin 37.1 1.6E+02 0.0034 24.6 7.0 29 81-109 87-115 (237)
239 TIGR03652 FeS_repair_RIC iron- 37.1 24 0.00053 29.3 2.0 29 82-112 8-36 (216)
240 cd06316 PBP1_ABC_sugar_binding 36.5 2.5E+02 0.0054 23.3 14.8 65 2-103 2-66 (294)
241 PRK10992 iron-sulfur cluster r 36.5 23 0.00049 29.9 1.8 27 82-110 15-41 (220)
242 TIGR03614 RutB pyrimidine util 35.8 1.9E+02 0.0041 23.9 7.3 24 84-107 141-164 (226)
243 cd01987 USP_OKCHK USP domain i 35.8 1.1E+02 0.0025 21.8 5.3 23 82-105 74-96 (124)
244 PF06506 PrpR_N: Propionate ca 35.7 1.2E+02 0.0026 24.1 5.8 82 26-109 31-139 (176)
245 PRK06186 hypothetical protein; 35.7 83 0.0018 26.9 5.0 50 93-172 53-102 (229)
246 PF07085 DRTGG: DRTGG domain; 35.6 64 0.0014 23.3 3.9 34 81-114 49-82 (105)
247 cd06285 PBP1_LacI_like_7 Ligan 35.5 2.4E+02 0.0052 22.8 15.2 33 1-33 1-33 (265)
248 COG2846 Regulator of cell morp 35.4 25 0.00053 29.8 1.8 29 81-111 14-42 (221)
249 cd06303 PBP1_LuxPQ_Quorum_Sens 35.4 2.5E+02 0.0055 23.1 14.4 69 2-104 2-71 (280)
250 cd06304 PBP1_BmpA_like Peripla 35.3 2.5E+02 0.0054 22.9 14.2 63 2-103 2-66 (260)
251 TIGR01501 MthylAspMutase methy 35.2 1.3E+02 0.0029 23.4 5.8 47 59-106 47-94 (134)
252 cd06354 PBP1_BmpA_PnrA_like Pe 35.1 2.6E+02 0.0056 23.1 13.1 62 2-102 2-66 (265)
253 PF02401 LYTB: LytB protein; 35.1 1.3E+02 0.0028 26.5 6.3 31 81-113 198-228 (281)
254 PF01995 DUF128: Domain of unk 34.5 29 0.00063 29.8 2.1 47 57-103 137-184 (236)
255 cd01833 XynB_like SGNH_hydrola 34.5 2E+02 0.0043 21.5 8.7 87 87-192 34-126 (157)
256 PRK05660 HemN family oxidoredu 34.4 42 0.00091 30.3 3.3 70 92-175 57-138 (378)
257 TIGR00566 trpG_papA glutamine 34.2 47 0.001 26.9 3.2 42 3-45 46-88 (188)
258 PRK12815 carB carbamoyl phosph 34.1 2.9E+02 0.0064 28.7 9.6 33 82-114 71-104 (1068)
259 PRK08690 enoyl-(acyl carrier p 34.1 2.7E+02 0.0059 23.0 8.5 87 2-105 8-96 (261)
260 CHL00101 trpG anthranilate syn 33.9 75 0.0016 25.6 4.4 21 89-109 39-59 (190)
261 cd06268 PBP1_ABC_transporter_L 33.9 2.5E+02 0.0054 22.5 7.6 25 79-105 52-76 (298)
262 PRK12360 4-hydroxy-3-methylbut 33.7 1.3E+02 0.0029 26.4 6.1 31 81-112 198-228 (281)
263 PRK11096 ansB L-asparaginase I 33.6 3.6E+02 0.0078 24.3 10.0 35 78-112 83-119 (347)
264 PF01964 ThiC: ThiC family; I 33.5 44 0.00095 31.1 3.2 136 18-169 141-308 (420)
265 PF01936 NYN: NYN domain; Int 33.4 44 0.00096 24.9 2.8 25 85-109 87-111 (146)
266 TIGR02405 trehalos_R_Ecol treh 33.1 3E+02 0.0065 23.2 13.7 24 80-103 102-125 (311)
267 cd01827 sialate_O-acetylestera 32.9 1.8E+02 0.0039 22.5 6.4 49 91-145 65-114 (188)
268 cd06312 PBP1_ABC_sugar_binding 32.6 2.7E+02 0.0059 22.6 15.1 66 2-104 2-68 (271)
269 cd01820 PAF_acetylesterase_lik 32.5 2.6E+02 0.0057 22.4 8.9 46 91-146 87-135 (214)
270 PHA02728 uncharacterized prote 32.3 24 0.00052 27.8 1.1 12 144-155 43-54 (184)
271 cd00537 MTHFR Methylenetetrahy 32.3 2.2E+02 0.0047 24.2 7.2 81 18-107 17-100 (274)
272 PRK13371 4-hydroxy-3-methylbut 32.0 1.5E+02 0.0033 27.4 6.4 31 80-110 275-305 (387)
273 KOG1342|consensus 31.6 1E+02 0.0022 28.7 5.1 67 67-157 264-331 (425)
274 PRK06774 para-aminobenzoate sy 31.6 69 0.0015 25.7 3.8 21 89-109 39-59 (191)
275 PRK07094 biotin synthase; Prov 31.4 1.1E+02 0.0024 26.5 5.4 28 78-105 71-98 (323)
276 PRK08445 hypothetical protein; 31.3 1.5E+02 0.0032 26.6 6.2 53 78-144 74-126 (348)
277 PRK07765 para-aminobenzoate sy 31.2 83 0.0018 26.1 4.3 43 3-45 49-92 (214)
278 COG0329 DapA Dihydrodipicolina 30.8 62 0.0013 28.4 3.6 31 78-108 23-53 (299)
279 cd01836 FeeA_FeeB_like SGNH_hy 30.8 2.5E+02 0.0055 21.7 9.1 47 89-145 63-112 (191)
280 COG0859 RfaF ADP-heptose:LPS h 30.8 88 0.0019 27.5 4.6 84 69-175 183-271 (334)
281 PRK11303 DNA-binding transcrip 30.7 2.4E+02 0.0051 23.8 7.2 25 80-104 104-128 (328)
282 COG1564 THI80 Thiamine pyropho 30.7 3.3E+02 0.0072 23.0 8.0 81 29-114 24-111 (212)
283 PF13380 CoA_binding_2: CoA bi 30.3 2E+02 0.0043 21.4 5.9 24 79-102 65-88 (116)
284 COG0041 PurE Phosphoribosylcar 30.1 85 0.0018 25.5 3.9 11 137-147 78-88 (162)
285 TIGR00888 guaA_Nterm GMP synth 29.9 40 0.00086 27.0 2.1 43 3-45 44-86 (188)
286 PF00117 GATase: Glutamine ami 29.9 70 0.0015 25.3 3.5 43 3-45 45-88 (192)
287 PTZ00063 histone deacetylase; 29.8 2.8E+02 0.0061 26.0 7.9 69 16-109 236-305 (436)
288 TIGR00288 conserved hypothetic 29.7 95 0.0021 25.1 4.2 28 81-108 90-120 (160)
289 PRK11440 putative hydrolase; P 29.7 2.1E+02 0.0046 22.7 6.4 23 17-39 36-58 (188)
290 smart00870 Asparaginase Aspara 29.5 4E+02 0.0086 23.5 10.1 35 78-112 58-96 (323)
291 cd00953 KDG_aldolase KDG (2-ke 29.0 69 0.0015 27.6 3.6 30 78-107 18-47 (279)
292 PRK00109 Holliday junction res 28.8 2.5E+02 0.0054 21.7 6.4 21 80-101 41-61 (138)
293 cd02071 MM_CoA_mut_B12_BD meth 28.6 1.5E+02 0.0033 22.0 5.0 50 58-108 44-94 (122)
294 TIGR01382 PfpI intracellular p 28.5 2.5E+02 0.0055 21.4 6.5 60 3-64 63-130 (166)
295 PRK13525 glutamine amidotransf 28.5 1.2E+02 0.0026 24.5 4.7 10 94-103 39-48 (189)
296 cd06297 PBP1_LacI_like_12 Liga 28.5 3.3E+02 0.0071 22.2 14.9 32 2-33 2-33 (269)
297 COG0052 RpsB Ribosomal protein 28.5 3.9E+02 0.0085 23.3 8.0 41 136-177 176-217 (252)
298 PLN02428 lipoic acid synthase 28.4 2.1E+02 0.0045 26.0 6.6 26 79-104 132-157 (349)
299 TIGR00250 RNAse_H_YqgF RNAse H 28.3 2.6E+02 0.0057 21.3 6.4 21 80-101 35-55 (130)
300 cd01977 Nitrogenase_VFe_alpha 28.1 2.4E+02 0.0052 25.7 7.1 77 79-172 72-150 (415)
301 PRK09492 treR trehalose repres 28.1 3.6E+02 0.0078 22.5 13.4 23 80-102 105-127 (315)
302 TIGR03551 F420_cofH 7,8-dideme 28.1 1.8E+02 0.0039 25.8 6.1 29 78-106 71-99 (343)
303 PRK14558 pyrH uridylate kinase 28.1 1.1E+02 0.0023 25.5 4.5 42 63-106 7-51 (231)
304 cd01824 Phospholipase_B_like P 28.0 1.7E+02 0.0037 25.4 5.9 44 96-145 123-170 (288)
305 PF02350 Epimerase_2: UDP-N-ac 28.0 1.4E+02 0.0031 26.5 5.5 32 82-113 56-87 (346)
306 cd06286 PBP1_CcpB_like Ligand- 27.8 3.2E+02 0.0069 21.9 14.3 67 1-105 1-67 (260)
307 cd01829 SGNH_hydrolase_peri2 S 27.7 2.9E+02 0.0064 21.4 8.8 25 82-106 48-73 (200)
308 cd07402 MPP_GpdQ Enterobacter 27.5 1.2E+02 0.0027 24.5 4.8 26 80-105 57-82 (240)
309 COG4126 Hydantoin racemase [Am 27.3 1.1E+02 0.0024 26.2 4.4 34 82-116 163-196 (230)
310 TIGR00510 lipA lipoate synthas 26.9 2.2E+02 0.0048 25.2 6.4 27 78-104 92-118 (302)
311 PRK05904 coproporphyrinogen II 26.9 45 0.00098 29.9 2.1 74 91-175 54-134 (353)
312 PHA00447 lysozyme 26.7 2.3E+02 0.0051 22.0 5.9 27 132-164 108-134 (142)
313 PF06792 UPF0261: Uncharacteri 26.6 1.2E+02 0.0027 28.1 4.9 79 26-107 25-107 (403)
314 cd03169 GATase1_PfpI_1 Type 1 26.4 2.6E+02 0.0055 21.9 6.3 61 3-65 79-147 (180)
315 PF00857 Isochorismatase: Isoc 26.4 2.7E+02 0.0059 21.3 6.3 89 16-108 27-126 (174)
316 TIGR00216 ispH_lytB (E)-4-hydr 26.4 2.6E+02 0.0057 24.5 6.7 31 80-111 196-226 (280)
317 PLN02327 CTP synthase 26.3 1.5E+02 0.0033 28.7 5.6 64 78-173 349-412 (557)
318 PF13460 NAD_binding_10: NADH( 25.9 3E+02 0.0065 21.0 9.3 88 19-107 12-103 (183)
319 PRK10727 DNA-binding transcrip 25.9 4.2E+02 0.009 22.6 13.1 24 80-103 102-125 (343)
320 cd06318 PBP1_ABC_sugar_binding 25.8 3.6E+02 0.0079 21.9 15.2 65 1-103 1-65 (282)
321 TIGR01212 radical SAM protein, 25.8 78 0.0017 27.7 3.4 82 79-175 63-158 (302)
322 TIGR01284 alt_nitrog_alph nitr 25.7 3.3E+02 0.0072 25.3 7.7 76 79-171 109-186 (457)
323 cd06300 PBP1_ABC_sugar_binding 25.6 3.6E+02 0.0079 21.8 14.9 24 80-103 47-70 (272)
324 cd06311 PBP1_ABC_sugar_binding 25.5 3.7E+02 0.008 21.8 15.2 26 79-104 46-71 (274)
325 PF02268 TFIIA_gamma_N: Transc 25.4 78 0.0017 20.6 2.5 18 118-135 17-34 (49)
326 cd06289 PBP1_MalI_like Ligand- 25.1 3.6E+02 0.0077 21.6 15.4 66 2-105 2-67 (268)
327 cd00952 CHBPH_aldolase Trans-o 25.1 85 0.0018 27.5 3.5 31 78-108 27-57 (309)
328 cd00411 Asparaginase Asparagin 25.1 4.8E+02 0.01 23.0 9.7 35 78-112 61-97 (323)
329 cd03134 GATase1_PfpI_like A ty 25.0 3.1E+02 0.0068 20.8 6.5 40 3-42 65-107 (165)
330 cd01391 Periplasmic_Binding_Pr 25.0 3.2E+02 0.007 21.0 6.7 79 17-102 111-191 (269)
331 TIGR02637 RhaS rhamnose ABC tr 25.0 4.1E+02 0.0088 22.1 14.0 65 2-103 1-66 (302)
332 cd01746 GATase1_CTP_Synthase T 24.9 1.2E+02 0.0026 25.7 4.2 40 3-43 58-98 (235)
333 PF00325 Crp: Bacterial regula 24.9 1E+02 0.0022 18.2 2.7 30 51-94 2-31 (32)
334 TIGR00520 asnASE_II L-asparagi 24.8 5.2E+02 0.011 23.3 10.3 35 78-112 86-124 (349)
335 PF01328 Peroxidase_2: Peroxid 24.7 38 0.00082 30.3 1.2 10 9-18 48-57 (317)
336 PF07722 Peptidase_C26: Peptid 24.7 4E+02 0.0087 22.0 8.3 47 49-103 22-68 (217)
337 cd06313 PBP1_ABC_sugar_binding 24.6 4E+02 0.0086 21.9 12.9 25 79-103 41-65 (272)
338 PF09837 DUF2064: Uncharacteri 24.6 1.1E+02 0.0023 23.2 3.6 27 3-29 62-88 (122)
339 cd00951 KDGDH 5-dehydro-4-deox 24.5 94 0.002 26.9 3.6 31 78-108 19-49 (289)
340 cd01823 SEST_like SEST_like. A 24.4 4E+02 0.0086 21.8 10.7 14 94-107 81-95 (259)
341 cd04254 AAK_UMPK-PyrH-Ec UMP k 24.4 1.5E+02 0.0033 24.6 4.8 43 62-106 6-51 (231)
342 cd01968 Nitrogenase_NifE_I Nit 24.4 2.9E+02 0.0063 25.0 6.9 73 83-174 76-148 (410)
343 PRK13276 cell wall biosynthesi 24.3 47 0.001 28.3 1.6 27 82-110 15-41 (224)
344 cd02072 Glm_B12_BD B12 binding 24.3 95 0.0021 24.1 3.2 38 67-105 53-91 (128)
345 cd06346 PBP1_ABC_ligand_bindin 24.2 4.4E+02 0.0094 22.2 8.5 43 59-103 160-202 (312)
346 PF00582 Usp: Universal stress 24.1 2.5E+02 0.0055 19.5 6.3 23 81-104 90-112 (140)
347 PRK08007 para-aminobenzoate sy 23.9 1.3E+02 0.0027 24.3 4.1 22 89-110 39-60 (187)
348 PRK15458 tagatose 6-phosphate 23.5 6.2E+02 0.014 23.8 13.1 135 11-189 23-172 (426)
349 PRK07649 para-aminobenzoate/an 23.5 1.1E+02 0.0025 24.9 3.8 21 89-109 39-59 (195)
350 cd01832 SGNH_hydrolase_like_1 23.4 3.1E+02 0.0066 21.0 6.1 30 91-120 65-98 (185)
351 TIGR03249 KdgD 5-dehydro-4-deo 23.3 1E+02 0.0022 26.7 3.6 30 78-107 24-53 (296)
352 cd06339 PBP1_YraM_LppC_lipopro 23.2 4E+02 0.0086 23.0 7.4 80 16-104 110-211 (336)
353 PRK13525 glutamine amidotransf 23.2 1.7E+02 0.0036 23.7 4.6 43 3-45 41-88 (189)
354 COG1168 MalY Bifunctional PLP- 23.1 3.4E+02 0.0075 25.1 7.0 106 3-114 85-218 (388)
355 PRK12564 carbamoyl phosphate s 23.0 1.4E+02 0.0031 27.0 4.6 42 3-44 221-263 (360)
356 PF01321 Creatinase_N: Creatin 22.7 97 0.0021 22.3 2.9 21 82-102 2-22 (132)
357 PLN02948 phosphoribosylaminoim 22.6 1.6E+02 0.0034 28.4 5.0 22 79-100 423-444 (577)
358 PRK09432 metF 5,10-methylenete 22.6 1.4E+02 0.003 26.3 4.3 80 17-105 40-122 (296)
359 cd01539 PBP1_GGBP Periplasmic 22.5 2.5E+02 0.0055 23.6 5.9 26 79-104 43-68 (303)
360 PF09837 DUF2064: Uncharacteri 22.4 3.2E+02 0.0069 20.6 5.8 35 81-116 48-82 (122)
361 cd00758 MoCF_BD MoCF_BD: molyb 22.3 2.8E+02 0.0061 20.8 5.5 55 48-105 15-70 (133)
362 PF02177 APP_N: Amyloid A4 N-t 22.2 1.1E+02 0.0023 23.1 3.0 21 131-151 42-67 (102)
363 TIGR00676 fadh2 5,10-methylene 22.2 1.5E+02 0.0032 25.5 4.4 75 22-105 21-98 (272)
364 TIGR03800 PLP_synth_Pdx2 pyrid 22.2 1.7E+02 0.0036 23.7 4.4 41 93-145 36-76 (184)
365 cd05005 SIS_PHI Hexulose-6-pho 22.1 3.5E+02 0.0076 21.2 6.3 35 78-114 19-53 (179)
366 cd01846 fatty_acyltransferase_ 22.1 2.3E+02 0.0051 23.4 5.5 82 81-168 132-227 (270)
367 KOG0330|consensus 22.1 1.7E+02 0.0036 27.6 4.8 36 79-114 139-178 (476)
368 PF04914 DltD_C: DltD C-termin 22.1 1.1E+02 0.0024 23.7 3.2 23 79-101 35-57 (130)
369 PRK03620 5-dehydro-4-deoxygluc 22.0 1.1E+02 0.0024 26.6 3.6 31 78-108 26-56 (303)
370 COG1979 Uncharacterized oxidor 22.0 1.8E+02 0.004 26.6 5.0 35 79-113 71-105 (384)
371 PRK10116 universal stress prot 22.0 3.2E+02 0.007 19.9 6.5 23 82-105 91-113 (142)
372 cd06267 PBP1_LacI_sugar_bindin 21.8 4E+02 0.0086 20.9 14.8 69 2-108 2-70 (264)
373 cd06338 PBP1_ABC_ligand_bindin 21.7 5E+02 0.011 22.0 9.1 43 60-104 165-207 (345)
374 PRK05294 carB carbamoyl phosph 21.6 4.7E+02 0.01 27.2 8.5 32 81-112 617-649 (1066)
375 COG2949 SanA Uncharacterized m 21.5 1E+02 0.0023 26.3 3.1 55 53-107 47-107 (235)
376 PRK15005 universal stress prot 21.3 1.6E+02 0.0034 21.7 3.9 21 82-103 96-116 (144)
377 PRK04183 glutamyl-tRNA(Gln) am 21.3 3.9E+02 0.0085 24.8 7.2 34 78-111 134-170 (419)
378 COG3937 Uncharacterized conser 21.3 1.6E+02 0.0034 22.4 3.7 27 111-137 21-47 (108)
379 COG2894 MinD Septum formation 21.2 1.3E+02 0.0029 26.2 3.7 34 71-104 91-124 (272)
380 PRK15126 thiamin pyrimidine py 21.2 87 0.0019 26.3 2.7 48 49-105 20-68 (272)
381 PF05054 DUF673: Protein of un 21.1 2E+02 0.0044 26.3 5.1 60 49-120 209-268 (357)
382 KOG3997|consensus 21.1 5.6E+02 0.012 22.3 9.6 69 108-194 81-149 (281)
383 TIGR00677 fadh2_euk methylenet 21.1 1.6E+02 0.0034 25.7 4.3 79 18-105 18-99 (281)
384 PRK11303 DNA-binding transcrip 21.1 5E+02 0.011 21.8 11.9 35 2-36 64-98 (328)
385 PRK06849 hypothetical protein; 20.9 4.9E+02 0.011 23.1 7.6 23 81-103 64-86 (389)
386 PRK06490 glutamine amidotransf 20.9 1.3E+02 0.0028 25.5 3.6 15 93-107 52-66 (239)
387 cd06324 PBP1_ABC_sugar_binding 20.9 5.1E+02 0.011 21.7 11.5 64 2-103 2-68 (305)
388 PRK13668 hypothetical protein; 20.8 4.6E+02 0.0099 23.0 7.1 78 82-175 146-235 (267)
389 cd01834 SGNH_hydrolase_like_2 20.8 3.8E+02 0.0082 20.3 8.4 46 90-145 58-110 (191)
390 cd06314 PBP1_tmGBP Periplasmic 20.8 4.6E+02 0.01 21.2 9.4 64 2-103 2-65 (271)
391 COG0685 MetF 5,10-methylenetet 20.8 1.7E+02 0.0036 25.7 4.4 80 18-105 33-117 (291)
392 PRK02842 light-independent pro 20.6 2.2E+02 0.0048 26.1 5.4 78 79-174 81-160 (427)
393 COG0518 GuaA GMP synthase - Gl 20.6 98 0.0021 25.6 2.8 43 2-44 47-94 (198)
394 PRK12564 carbamoyl phosphate s 20.6 2.8E+02 0.0062 25.1 6.0 21 89-109 214-234 (360)
395 PF05165 GGDN: GGDN family; I 20.6 5.5E+02 0.012 22.3 7.4 85 82-190 159-245 (246)
396 COG2185 Sbm Methylmalonyl-CoA 20.6 2.7E+02 0.0058 22.1 5.1 51 62-113 61-112 (143)
397 TIGR00035 asp_race aspartate r 20.5 2.1E+02 0.0045 23.7 4.8 34 80-114 62-95 (229)
398 COG3340 PepE Peptidase E [Amin 20.5 1.8E+02 0.0039 24.9 4.4 88 61-167 59-157 (224)
399 cd06309 PBP1_YtfQ_like Peripla 20.5 4.7E+02 0.01 21.2 14.6 65 2-104 2-66 (273)
400 cd06294 PBP1_ycjW_transcriptio 20.5 4.5E+02 0.0098 21.0 9.2 22 82-103 49-70 (270)
401 TIGR03699 mena_SCO4550 menaqui 20.4 2.3E+02 0.005 24.9 5.3 30 77-106 72-101 (340)
402 cd06306 PBP1_TorT-like TorT-li 20.3 4.8E+02 0.01 21.3 14.9 66 2-103 2-67 (268)
403 PRK08776 cystathionine gamma-s 20.3 5.8E+02 0.013 23.1 8.0 91 3-100 78-180 (405)
404 COG1646 Predicted phosphate-bi 20.2 3.8E+02 0.0082 23.2 6.3 61 80-157 28-88 (240)
405 COG0816 Predicted endonuclease 20.2 4.4E+02 0.0095 20.7 6.4 43 80-122 40-85 (141)
406 PF09423 PhoD: PhoD-like phosp 20.2 1E+02 0.0022 28.3 3.2 29 79-107 349-377 (453)
407 PRK00025 lpxB lipid-A-disaccha 20.1 5.4E+02 0.012 22.2 7.6 88 4-102 4-94 (380)
408 cd02812 PcrB_like PcrB_like pr 20.1 4.5E+02 0.0098 22.2 6.8 58 82-157 14-72 (219)
409 PF09970 DUF2204: Nucleotidyl 20.1 1.1E+02 0.0025 24.7 3.1 23 80-103 3-25 (181)
410 PF06789 UPF0258: Uncharacteri 20.1 1.1E+02 0.0024 24.7 2.9 24 151-174 102-128 (159)
411 CHL00197 carA carbamoyl-phosph 20.0 2.3E+02 0.005 26.0 5.3 25 88-112 228-252 (382)
No 1
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=5.5e-60 Score=452.65 Aligned_cols=195 Identities=68% Similarity=1.121 Sum_probs=191.0
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
|||+||||||||||++|++++++++++|++||||++||+||++++.++.+++|++++.|.++|||+|||+|+++|++++.
T Consensus 6 IaIltSGGdapGmNaaIravvr~a~~~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LGTsR~~~f~~~e~ 85 (762)
T cd00764 6 IAVLTSGGDAQGMNAAVRAVVRMGIYVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGSARCKEFREREG 85 (762)
T ss_pred EEEEccCCCchhHhHHHHHHHHHHHHCCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCcccCCCCCcccCHHH
Confidence 79999999999999999999999999999999999999999998667999999999999999999999999999988889
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
+++++++|++++||+||+||||||+++|++|+++|+++++||.++++|++++++++++++|||||||||||+++||+|||
T Consensus 86 ~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~gTD~TiG 165 (762)
T cd00764 86 RLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIG 165 (762)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCCCcCCCC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
||||+++++++|+++.+||.||+|+||||+|||++
T Consensus 166 fdTAl~~i~eaId~i~~tA~Sh~R~fVVEvMGR~~ 200 (762)
T cd00764 166 TDSALHRICEVVDAITTTAQSHQRTFVLEVMGRHC 200 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCCCc
Confidence 99999999999999999999999999999999985
No 2
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=1.2e-59 Score=450.97 Aligned_cols=195 Identities=68% Similarity=1.111 Sum_probs=191.0
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
+||+||||||||||++|+++++++.++|++||||++||+||+++.+++++|+|++++.|.++|||+|||+|++++++++.
T Consensus 3 IaIltsGGdapGmNaaIravv~~a~~~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~~~~~ 82 (745)
T TIGR02478 3 IGVLTSGGDAQGMNAAVRAVVRMAIYVGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGTIIGTARCKEFRERPG 82 (745)
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCceecCCCCCcccCHHH
Confidence 79999999999999999999999999999999999999999998778999999999999999999999999999988888
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
+++++++|++++||+||+||||||+++|+.|+++|+++|+||.+++++++++++++++++|||||||||||+++||+|||
T Consensus 83 ~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd~TiG 162 (745)
T TIGR02478 83 RLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIG 162 (745)
T ss_pred HHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
||||+++++++||++++||.||+||||||+|||++
T Consensus 163 fdTA~~~i~~aid~i~~ta~Sh~R~fvvEvMGR~~ 197 (745)
T TIGR02478 163 ADSALHRICEAIDAISSTAQSHQRAFVVEVMGRHC 197 (745)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCEEEEEEcCccc
Confidence 99999999999999999999999999999999986
No 3
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=2e-59 Score=410.16 Aligned_cols=171 Identities=50% Similarity=0.818 Sum_probs=166.0
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
|||+||||||||||++|+++++++.+++++|||+++||+||+++ ++++|+|++++.|.++|||+|||+|+++++++++
T Consensus 2 IaIltsGG~apG~Na~i~~vv~~a~~~g~~v~G~~~G~~GL~~~--~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~~ 79 (301)
T TIGR02482 2 IGILTSGGDAPGMNAAIRAVVRTAIYHGFEVYGIRRGYKGLING--EIKPLESKNVSGIIHRGGTILGTARCPEFKTEEG 79 (301)
T ss_pred EEEEccCCCcHHHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCC--CeEeCCHHHHhhHHhCCCceeccCCCCccCCHHH
Confidence 79999999999999999999999998899999999999999999 9999999999999999999999999998888889
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
+++++++|++++||+||+||||||+++|++|+|+| +++||+||||||||+++||+|||
T Consensus 80 ~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~----------------------~i~vigiPkTIDNDl~~td~s~G 137 (301)
T TIGR02482 80 RQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEG----------------------GIPVIGLPGTIDNDIPGTDYTIG 137 (301)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhh----------------------CCCEEeecccccCCCcCcccCcC
Confidence 99999999999999999999999999999998753 89999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
||||++++++++++++++|.||+||||||+|||++
T Consensus 138 fdTA~~~~~~~i~~i~~ta~s~~rv~ivEvMGR~~ 172 (301)
T TIGR02482 138 FDTALNTIIDAVDKIRDTATSHERAFVIEVMGRHA 172 (301)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCH
Confidence 99999999999999999999999999999999985
No 4
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=4.1e-59 Score=405.15 Aligned_cols=171 Identities=44% Similarity=0.774 Sum_probs=163.4
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
|||+||||||||||++|+++++++.++|++||||++||+||+++ ++.+|+|++++.|.++|||+|||+|++++++++.
T Consensus 3 I~Il~sGG~apG~Na~i~~~v~~a~~~g~~v~g~~~G~~GL~~~--~~~~l~~~~v~~~~~~gGt~lgtsR~~~~~~~~~ 80 (282)
T PF00365_consen 3 IAILTSGGDAPGMNAAIRGVVRYAIRRGWEVYGIRNGFEGLLNG--DIIELTWEDVRGIINQGGTILGTSRFKPFKDPEG 80 (282)
T ss_dssp EEEEEESS--TTHHHHHHHHHHHHHHTTSEEEEETTHHHHHHHC--TEEEECGGGGTTGGGSSSSTTTBBBSSGGGSHHH
T ss_pred EEEEecCCCchhhhHHHHHHHHHHHhcCCEEEEEEccCccceee--eEEeecccCccccccCCCcEeCcccCccccchhh
Confidence 79999999999999999999999999999999999999999999 9999999999999999999999999999988889
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
+++++++|++++||+||+|||||||++|++|+|++ +++||+||||||||+++||+|||
T Consensus 81 ~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~----------------------~i~vigiPkTIDNDi~gtd~siG 138 (282)
T PF00365_consen 81 RKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEF----------------------GIPVIGIPKTIDNDIPGTDYSIG 138 (282)
T ss_dssp HHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHH----------------------HSEEEEEEEETTSSCTTSSS-BT
T ss_pred hhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC----------------------ceEEEEEeccccCCcCCCCCCcc
Confidence 99999999999999999999999999999998753 48999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
||||++++++.++++++||+||+||||||+|||++
T Consensus 139 f~TA~~~~~~~i~~i~~~a~s~~rv~ivEvmGr~~ 173 (282)
T PF00365_consen 139 FDTAVNYIAEAIDNIKTTARSHNRVFIVEVMGRNA 173 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTEEEEEEESSTTS
T ss_pred cCchhHHHHHHHHHHHHhhcccCCceEEEeCCCCc
Confidence 99999999999999999999999999999999986
No 5
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=8.8e-59 Score=408.67 Aligned_cols=170 Identities=46% Similarity=0.724 Sum_probs=165.2
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
|||+||||||||||++|+++++++.++|++|||+++||+||+++ ++++|+|++++.|.++|||+|||+|+++++++++
T Consensus 3 IaIltsGG~apGmNa~i~~vv~~a~~~g~~v~G~~~G~~GL~~~--~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~~ 80 (317)
T cd00763 3 IGVLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIRDGYAGLIAG--DIVPLDRYSVSDIINRGGTFLGSARFPEFKDEEG 80 (317)
T ss_pred EEEEccCCCcHHHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCC--CeEeCCHHHhhhHHhCCCeeeccCCCCccCCHHH
Confidence 79999999999999999999999999999999999999999999 9999999999999999999999999998888899
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
+++++++|++++||+|++||||||+++|++|+|+ +++||+||||||||+++||+|||
T Consensus 81 ~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~-----------------------~i~vigiPkTIDNDi~gtd~t~G 137 (317)
T cd00763 81 QAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH-----------------------GFPCVGLPGTIDNDIPGTDYTIG 137 (317)
T ss_pred HHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc-----------------------CCCEEEecccccCCCCCCccCCC
Confidence 9999999999999999999999999999999852 79999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
||||++++++++++++++|.||+||||||+|||++
T Consensus 138 f~TA~~~~~~~i~~i~~ta~s~~rv~ivEvMGR~~ 172 (317)
T cd00763 138 FDTALNTVVEAIDRIRDTSSSHQRISVVEVMGRHC 172 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCCCCh
Confidence 99999999999999999999999999999999985
No 6
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.6e-59 Score=412.28 Aligned_cols=171 Identities=47% Similarity=0.728 Sum_probs=167.3
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
|||+|||||||||||+|+++++++...+++||||++||+||+++ ++.+|++++++.|++.|||+|||+|++.+++++.
T Consensus 5 IaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~Gy~GL~~~--~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~~e~ 82 (347)
T COG0205 5 IAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNGYLGLLEG--DIKPLTREDVDDLINRGGTFLGSARFPEFKTEEG 82 (347)
T ss_pred EEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEecchhhhcCC--cceeccccchhHHHhcCCeEEeeCCCCCcccHHH
Confidence 79999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
+++++++|++++||+||+||||||+.+|++|+|+| +++|||||||||||+++||+|||
T Consensus 83 ~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~----------------------~i~vVGvPkTIDNDi~~td~tiG 140 (347)
T COG0205 83 RKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG----------------------GIPVVGVPKTIDNDISGTDFTIG 140 (347)
T ss_pred HHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc----------------------CCcEEecCCCccCCCcccccCcc
Confidence 99999999999999999999999999999999874 59999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
||||++++++++++++.+++||+||||||+|||++
T Consensus 141 fdTA~~~~~eaid~l~dtassh~r~~iveVMGR~a 175 (347)
T COG0205 141 FDTALETAVEAIDNLRDTASSHERIFIVEVMGRHA 175 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCEEEEEecCcCh
Confidence 99999999999999999999999999999999986
No 7
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=1e-58 Score=411.60 Aligned_cols=176 Identities=55% Similarity=0.857 Sum_probs=170.2
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
+||+||||||||||++|+++++++.++|++||||++||+||+++ ++++|++++++.|.++|||+|||+|+++++++++
T Consensus 3 i~Il~sGG~apG~N~~i~~~v~~~~~~g~~v~G~~~G~~GL~~~--~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~~~ 80 (338)
T cd00363 3 IGVLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIYEGYAGLVEG--DIKELDWESVSDIINRGGTIIGSARCKEFRTEEG 80 (338)
T ss_pred EEEEccCCCchhHHHHHHHHHHHHHHCCCEEEEEecChHHhCCC--CeEeCCHHHhcchhhCCCeecccCCCCccCCHHH
Confidence 79999999999999999999999999999999999999999999 9999999999999999999999999998877889
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
+++++++|++++||+||+||||||+++|++|+|+ +++++.+++||+||||||||+++||+|||
T Consensus 81 ~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~-----------------~~~~~~~i~vigiPkTIDNDl~~td~s~G 143 (338)
T cd00363 81 RAKAAENLKKHGIDALVVIGGDGSYTGADLLTEE-----------------WPSKYQGFNVIGLPGTIDNDIKGTDYTIG 143 (338)
T ss_pred HHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHH-----------------HHhcCCCccEEEeeecccCCCcCcccCcC
Confidence 9999999999999999999999999999999975 46778899999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
||||+++++++++++++||.||+||||||+|||++
T Consensus 144 f~TA~~~~~~~i~~l~~~a~s~~rv~ivEvMGR~~ 178 (338)
T cd00363 144 FDTALKTIVEAIDRIRDTASSHQRTFVVEVMGRHC 178 (338)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCEEEEEECCcCH
Confidence 99999999999999999999999999999999985
No 8
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=4e-58 Score=404.98 Aligned_cols=170 Identities=49% Similarity=0.780 Sum_probs=165.6
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
+||+||||||||||++|+++++++..+|++||||++||+||+++ ++.+|+|++++.|.++|||+|||+|+++++++++
T Consensus 4 i~Il~sGG~apG~Na~i~~~~~~~~~~g~~v~g~~~G~~GL~~~--~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~~~ 81 (320)
T PRK03202 4 IGVLTSGGDAPGMNAAIRAVVRTAISEGLEVYGIYDGYAGLLEG--DIVKLDLKSVSDIINRGGTILGSARFPEFKDEEG 81 (320)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHCCCeEEEEecChhhhcCC--CEEECCHHHHhhHHhCCCcccccCCCCCcCCHHH
Confidence 79999999999999999999999999999999999999999999 9999999999999999999999999999888899
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
+++++++|++++||+||+||||||+++|++|+| .+++||+||||||||+++||+|||
T Consensus 82 ~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e-----------------------~~i~vigiPkTIDNDl~gtd~s~G 138 (320)
T PRK03202 82 RAKAIENLKKLGIDALVVIGGDGSYMGAKRLTE-----------------------HGIPVIGLPGTIDNDIAGTDYTIG 138 (320)
T ss_pred HHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHh-----------------------cCCcEEEecccccCCCCCCccCcC
Confidence 999999999999999999999999999999985 289999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
||||++++++++++++.||.||+||||||+|||++
T Consensus 139 f~TA~~~~~~~i~~l~~~a~s~~rv~iVEvMGR~~ 173 (320)
T PRK03202 139 FDTALNTAVEAIDRLRDTASSHERVFIVEVMGRHA 173 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCEEEEEECCCCh
Confidence 99999999999999999999999999999999986
No 9
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=2.1e-57 Score=401.09 Aligned_cols=170 Identities=36% Similarity=0.611 Sum_probs=162.8
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHH-HcCCEEEEEcCcchhhccCCCCeEEC-ChhhhhhhhhhcCceecccCCCCcc-C
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGI-YLGCKVFFIKEGYQGMVDGGDNIVEA-NWSSVSSIIHKGGTVIGSARCSDFR-E 78 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~-~~g~~v~g~~~G~~GL~~~~~~~~~l-~~~~v~~~~~~gGs~LgssR~~~~~-~ 78 (197)
||||||||||||||++|++++++++ ++|++||||++||+||+++ ++++| +|++++.|.++|||+|||+|++++. +
T Consensus 2 IgIltsGG~apGmN~~i~~~v~~a~~~~g~~v~g~~~G~~GL~~~--~~~~l~~~~~v~~~~~~GGt~LgtsR~~~~~~~ 79 (324)
T TIGR02483 2 IGVLTGGGDCPGLNAVIRGVVRRAIAEYGWEVIGIRDGWRGLLEG--DTVPLLDLEDVRGILPRGGTILGSSRTNPFKYE 79 (324)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHcCCceEEEEccCHHHhCCC--CeEecCCHHHHHHHHhCCCccccCCCCCccccC
Confidence 8999999999999999999999998 6699999999999999999 99999 9999999999999999999999886 4
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCC
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDM 158 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~ 158 (197)
++++++++++|++++||+||+||||||+++|++|+| .+++||+||||||||+++||+
T Consensus 80 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~-----------------------~gi~vigiPkTIDNDl~gtd~ 136 (324)
T TIGR02483 80 EDGDDKIVANLKELGLDALIAIGGDGTLGIARRLAD-----------------------KGLPVVGVPKTIDNDLEATDY 136 (324)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHh-----------------------cCCCEEeeccccCCCCcCCcc
Confidence 578999999999999999999999999999999875 269999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 159 TIGTDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 159 s~GfdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
|||||||++++++.++++++||.||+||||||+|||++
T Consensus 137 tiGfdTA~~~~~~~i~~i~~ta~S~~r~~ivEvMGR~~ 174 (324)
T TIGR02483 137 TFGFDTAVEIATEALDRLHTTAESHHRVMVVEVMGRHA 174 (324)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEcCCCh
Confidence 99999999999999999999999999999999999985
No 10
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.8e-56 Score=405.10 Aligned_cols=175 Identities=22% Similarity=0.296 Sum_probs=161.5
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcC--CEEEEEcCcchhhccCCCCeEECChhhhhh---hhhhcCceecccCCCC-
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLG--CKVFFIKEGYQGMVDGGDNIVEANWSSVSS---IIHKGGTVIGSARCSD- 75 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g--~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~---~~~~gGs~LgssR~~~- 75 (197)
|||+||||||||||++|+++++++.+++ ++||||++||+||+++ ++++|+..+++. +.++|||+|||||+++
T Consensus 6 i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~--~~~~l~~~~~~~i~~i~~~gGt~LgssR~~~~ 83 (416)
T PRK14072 6 ALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDE--DLIDLSKESDEALAALAHTPSGALGSCRYKLK 83 (416)
T ss_pred EEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCC--CeeeCChhhHhHHHHHhcCCCeEeccCCCCCc
Confidence 8999999999999999999999999888 9999999999999999 999998766665 8999999999999997
Q ss_pred -cc-ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCC
Q psy5987 76 -FR-EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDF 153 (197)
Q Consensus 76 -~~-~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi 153 (197)
+. +++.+++++++|++++||+||+|||||||++|++|+|+ +++++++++|||||||||||+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~-----------------~~~~g~~i~vIgIPkTIDNDl 146 (416)
T PRK14072 84 SLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQL-----------------AKKMGYPIRCIGIPKTIDNDL 146 (416)
T ss_pred ccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHH-----------------HHHhCCCceEEEeeecccCCC
Confidence 33 67889999999999999999999999999999999864 455667899999999999999
Q ss_pred CCCCCCCCchhHHHHHHHHHHHH----HHhhccCCcEEEEEecCCCC
Q psy5987 154 CGTDMTIGTDSALHRIIEAIDAI----VSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 154 ~g~d~s~GfdTA~~~~~~~i~~l----~~~a~S~~rv~ivE~mGr~~ 196 (197)
++||+|||||||+++++++++++ ++++.|| ||||||+|||++
T Consensus 147 ~gtD~t~GF~TA~~~i~~ai~~l~~D~~~ta~s~-Rv~iVEvMGR~a 192 (416)
T PRK14072 147 PGTDHCPGFGSAAKYIATSVLEAALDVAAMANTS-KVFILEVMGRHA 192 (416)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHhcccCc-eEEEEEEeCcch
Confidence 99999999999999999999999 5666667 999999999986
No 11
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=1e-55 Score=400.21 Aligned_cols=173 Identities=28% Similarity=0.394 Sum_probs=161.3
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCC-EEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGC-KVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~-~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
||||||||||||||++|+++++++..+|+ +|||+++||+||++++...++|++++++.|.++|||+|||+|+++
T Consensus 56 IaIltsGGdaPGmNa~Iravv~~a~~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~----- 130 (411)
T PLN02884 56 AAIVTCGGLCPGLNDVIRQIVFTLEIYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLGVSRGGA----- 130 (411)
T ss_pred EEEEcCCCCCccHhHHHHHHHHHHHHcCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCceeccCCCCc-----
Confidence 79999999999999999999999988898 899999999999999222677889999999999999999999985
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTI 160 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~ 160 (197)
.+++++++|++++||+||+|||||||++|++|+++ +++++.+++||+||||||||+++||+||
T Consensus 131 ~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~-----------------~~~~g~~i~vIGIPkTIDNDi~~tD~Ti 193 (411)
T PLN02884 131 KTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNE-----------------CRKRKMKVSVVGVPKTIDNDILLMDKTF 193 (411)
T ss_pred cHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHH-----------------HHHcCCCceEEeccccccCCCcCcccCC
Confidence 48899999999999999999999999999999864 3556678999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHhhcc-CCcEEEEEecCCCC
Q psy5987 161 GTDSALHRIIEAIDAIVSTAYS-HQRTFIMEVMGRLK 196 (197)
Q Consensus 161 GfdTA~~~~~~~i~~l~~~a~S-~~rv~ivE~mGr~~ 196 (197)
|||||+++++++|++++.||.| |+||||||+|||++
T Consensus 194 GFdTAv~~~~~ai~~l~~tA~s~~~rv~iVEvMGR~a 230 (411)
T PLN02884 194 GFDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSS 230 (411)
T ss_pred CHHHHHHHHHHHHHHHHHhhhccCCcEEEEEeCCCCH
Confidence 9999999999999999999987 78999999999985
No 12
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=4.1e-55 Score=391.21 Aligned_cols=173 Identities=30% Similarity=0.467 Sum_probs=160.6
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHc-CCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccC-CCCccC-
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYL-GCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR-CSDFRE- 78 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~-g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR-~~~~~~- 78 (197)
|||+||||||||||++|+++++++.++ +++|||+++||+||++++.++.+|+|++++.|.++|||+||||| ..+++.
T Consensus 7 I~IltsGG~apGmNa~i~~vv~~a~~~~g~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~ 86 (360)
T PRK14071 7 IGILTSGGDCAGLNAVIRAVVHRARGTYGWEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGTILGTTNKGDPFAFP 86 (360)
T ss_pred EEEECCCCCchhHHHHHHHHHHHHHhcCCCEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCceeccCCCCCccccc
Confidence 799999999999999999999999875 99999999999999998557999999999999999999999996 354432
Q ss_pred ------hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccC
Q psy5987 79 ------KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 79 ------~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDND 152 (197)
++.+++++++|++++||+||+||||||+++|++|+|. .+++||+||||||||
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~----------------------~~i~vIgiPkTIDND 144 (360)
T PRK14071 87 MPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ----------------------GGINLVGIPKTIDND 144 (360)
T ss_pred cccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh----------------------cCCcEEEecccccCC
Confidence 4578999999999999999999999999999988742 389999999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 153 FCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 153 i~g~d~s~GfdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
+++||+|||||||++++++++++++++|.||+||||||+|||++
T Consensus 145 l~~td~t~Gf~TA~~~~~~~id~i~~ta~s~~rv~ivEvMGR~~ 188 (360)
T PRK14071 145 VGATEVSIGFDTAVNIATEALDRLHFTAASHNRVMILEVMGRDA 188 (360)
T ss_pred CcCcccCcChhHHHHHHHHHHHHHHhhhcccCCEEEEEECCCCc
Confidence 99999999999999999999999999999999999999999986
No 13
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=1.3e-54 Score=395.62 Aligned_cols=171 Identities=29% Similarity=0.393 Sum_probs=160.8
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHc-C-CEEEEEcCcchhhcc---CCCCeEECChhhhhhhhhhcCceecccCCCCc
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYL-G-CKVFFIKEGYQGMVD---GGDNIVEANWSSVSSIIHKGGTVIGSARCSDF 76 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~-g-~~v~g~~~G~~GL~~---~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~ 76 (197)
+||+||||||||||++|+++++++.++ + ++||||++||+||++ + ++++|+|++++.|+++|||+|||||.+
T Consensus 83 iaIvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~--~~~~Lt~~~v~~i~~~GGTiLGTsR~~-- 158 (443)
T PRK06830 83 AAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGH--DPVELTPEVVADIHEFGGTILGSSRGP-- 158 (443)
T ss_pred EEEECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCC--CEEECCHHHHhhHHhCCCccccCCCCc--
Confidence 799999999999999999999999754 5 799999999999998 6 899999999999999999999999975
Q ss_pred cChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCC
Q psy5987 77 REKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGT 156 (197)
Q Consensus 77 ~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~ 156 (197)
+++++++++|++++||+||+|||||||++|++|+|+ +++++.+++||||||||||||+++
T Consensus 159 ---~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee-----------------~~~~g~~I~VIGIPKTIDNDi~~t 218 (443)
T PRK06830 159 ---QDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEE-----------------IERRGLKISVIGIPKTIDNDINFI 218 (443)
T ss_pred ---hhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHH-----------------HHHhCCCceEEEeccccCCCCcCc
Confidence 368999999999999999999999999999999864 466678899999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhccC-CcEEEEEecCCCC
Q psy5987 157 DMTIGTDSALHRIIEAIDAIVSTAYSH-QRTFIMEVMGRLK 196 (197)
Q Consensus 157 d~s~GfdTA~~~~~~~i~~l~~~a~S~-~rv~ivE~mGr~~ 196 (197)
|+|||||||+++++++|++++.||.|+ +||||||+|||++
T Consensus 219 d~S~GFdTAv~~a~~aI~~~~~eA~s~~~rv~iVEvMGR~s 259 (443)
T PRK06830 219 QKSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLMGRHS 259 (443)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEECCCcc
Confidence 999999999999999999999999997 6899999999986
No 14
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=1.3e-54 Score=397.93 Aligned_cols=171 Identities=29% Similarity=0.471 Sum_probs=160.7
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHc-C-CEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccCh
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYL-G-CKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREK 79 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~-g-~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~ 79 (197)
+|||||||||||||++|+++++.+.+. + .+||||++||+||+++ ++++|+++.++.|.++|||+|||||++.
T Consensus 90 iaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~--~~i~Lt~~~V~~i~~~GGTiLGTsR~~~---- 163 (484)
T PLN02564 90 ACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSR--NTIPLTPKVVNDIHKRGGTILGTSRGGH---- 163 (484)
T ss_pred EEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCC--CeEeCCHHHhhcHhhCCCceeccCCCcc----
Confidence 799999999999999999999987633 5 6999999999999999 9999999999999999999999999863
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMT 159 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s 159 (197)
+.++++++|++++||+||+|||||||++|++|++ ++++++.+++||||||||||||++||+|
T Consensus 164 -~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e-----------------~~~~~g~~i~VIGIPKTIDNDI~~tD~T 225 (484)
T PLN02564 164 -DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYE-----------------EIRRRGLKVAVAGIPKTIDNDIPVIDKS 225 (484)
T ss_pred -hHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHH-----------------HHHHcCCCceEEEecccccCCCcCcccC
Confidence 6889999999999999999999999999999985 3466678899999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhccCC-cEEEEEecCCCC
Q psy5987 160 IGTDSALHRIIEAIDAIVSTAYSHQ-RTFIMEVMGRLK 196 (197)
Q Consensus 160 ~GfdTA~~~~~~~i~~l~~~a~S~~-rv~ivE~mGr~~ 196 (197)
||||||+++++++|++++.||.|++ ||||||+|||++
T Consensus 226 ~GFdTAv~~~~~aI~~i~~tA~S~~~rv~iVEvMGR~a 263 (484)
T PLN02564 226 FGFDTAVEEAQRAINAAHVEAESVENGIGLVKLMGRYS 263 (484)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCCH
Confidence 9999999999999999999999986 999999999985
No 15
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=2.2e-54 Score=389.54 Aligned_cols=176 Identities=24% Similarity=0.310 Sum_probs=160.0
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHH--cCCEEEEEcCcchhhccCCCCeEECChh--hh-hhhhhhcCceecccCCCCc
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIY--LGCKVFFIKEGYQGMVDGGDNIVEANWS--SV-SSIIHKGGTVIGSARCSDF 76 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~--~g~~v~g~~~G~~GL~~~~~~~~~l~~~--~v-~~~~~~gGs~LgssR~~~~ 76 (197)
+||+||||||||||++|+++++++.. ++++|||+++||+||+++ ++++|++. ++ ..++++|||+|||||++++
T Consensus 6 i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~--~~~~l~~~~~~~~~~i~~~GGt~LGtsR~~~~ 83 (403)
T PRK06555 6 VALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLG--DSIEITPAVRANAGLLHRYGGSPIGNSRVKLT 83 (403)
T ss_pred EEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCC--CceeCChhHhhhhhHHHhCCCceeccCCCCcc
Confidence 89999999999999999999999854 789999999999999999 99999975 34 4599999999999999873
Q ss_pred --cC----------hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEE
Q psy5987 77 --RE----------KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAG 144 (197)
Q Consensus 77 --~~----------~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvg 144 (197)
.+ ++.+++++++|++++||+||+||||||+++|++|+++ +++++++++||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~-----------------~~~~g~~i~vvg 146 (403)
T PRK06555 84 NVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAY-----------------LAENGYDLTVVG 146 (403)
T ss_pred ccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHH-----------------HHHhCCCceEEE
Confidence 22 4568999999999999999999999999999999864 355567999999
Q ss_pred eeeecccCCCCCCCCCCchhHHHHHHHHHHHHHHhhccCCcEEEE-EecCCCC
Q psy5987 145 LVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIM-EVMGRLK 196 (197)
Q Consensus 145 iPkTIDNDi~g~d~s~GfdTA~~~~~~~i~~l~~~a~S~~rv~iv-E~mGr~~ 196 (197)
||||||||+++||+||||+||++++++++++++.||.||+|+|+| |+|||++
T Consensus 147 IPkTIDNDl~~td~t~Gf~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~a 199 (403)
T PRK06555 147 LPKTIDNDVVPIRQSLGAWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNC 199 (403)
T ss_pred eeeeeeCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCch
Confidence 999999999999999999999999999999999999999888766 9999985
No 16
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=2.8e-54 Score=395.09 Aligned_cols=171 Identities=29% Similarity=0.396 Sum_probs=161.4
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHH-cC-CEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccCh
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIY-LG-CKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREK 79 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~-~g-~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~ 79 (197)
+|||||||||||||++|+++++++.+ ++ .+||||++||+||+++ ++++|+|+.++.|+++|||+|||||++
T Consensus 90 iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~--~~i~Lt~~~V~~i~~~GGTiLGTSR~~----- 162 (459)
T PTZ00286 90 AGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKE--DWIKLDPKDVKTIHRLGGTILGSSRGG----- 162 (459)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCC--CeEECCHHHhhhHHhCCCceeccCCCh-----
Confidence 79999999999999999999999973 34 6999999999999999 899999999999999999999999976
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMT 159 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s 159 (197)
.++++++++|++++||+||+|||||||++|++|+|+ +++++.+++||||||||||||+++|+|
T Consensus 163 ~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee-----------------~~~~g~~I~VIGIPKTIDNDI~~td~S 225 (459)
T PTZ00286 163 FDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKE-----------------LRRRKLNISVVGIPKTIDNDIPIIDES 225 (459)
T ss_pred hhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHH-----------------HHHhCCCceEEEeccccCCCCCCcccC
Confidence 368999999999999999999999999999999864 466778899999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhccCC-cEEEEEecCCCC
Q psy5987 160 IGTDSALHRIIEAIDAIVSTAYSHQ-RTFIMEVMGRLK 196 (197)
Q Consensus 160 ~GfdTA~~~~~~~i~~l~~~a~S~~-rv~ivE~mGr~~ 196 (197)
||||||+++++++|++++.||.|++ +|||||+|||++
T Consensus 226 ~GFdTAv~~~~~aI~~~~~eA~S~~~~v~iVEvMGR~s 263 (459)
T PTZ00286 226 FGFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKLMGRDS 263 (459)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcch
Confidence 9999999999999999999999987 899999999985
No 17
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=1.6e-53 Score=396.47 Aligned_cols=175 Identities=24% Similarity=0.315 Sum_probs=163.7
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHc--CCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCc-eecccCCCCccC
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYL--GCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGT-VIGSARCSDFRE 78 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~--g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs-~LgssR~~~~~~ 78 (197)
|||++|||||||||++|+++++++... +++||||++||+||+++ ++++|+++.++.|+++||+ +|||+|++ +.+
T Consensus 70 IgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~--~~~~Lt~~~v~~~~~~GG~~~LGssR~k-~~~ 146 (539)
T TIGR02477 70 IGVILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDN--NYVELTKELIDTYRNTGGFDIIGSGRTK-IET 146 (539)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCC--CeEeCCHHHHhHHHhCCCchhhcCCCCC-CCC
Confidence 899999999999999999999998644 88999999999999999 9999999999999999997 99999998 567
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCC--C
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCG--T 156 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g--~ 156 (197)
++++++++++|++++||+||+||||||+++|++|+|+| ++++.+++|||||||||||+++ |
T Consensus 147 ~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~-----------------~~~g~~i~VIGIPkTIDNDl~~~~t 209 (539)
T TIGR02477 147 EEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYF-----------------AKHGLKTQVIGVPKTIDGDLKNQFI 209 (539)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHH-----------------HhcCCCceEEEEeeeecCCCCCCCC
Confidence 88999999999999999999999999999999999764 5566789999999999999985 9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhcc-CCcEEEEEecCCCC
Q psy5987 157 DMTIGTDSALHRIIEAIDAIVSTAYS-HQRTFIMEVMGRLK 196 (197)
Q Consensus 157 d~s~GfdTA~~~~~~~i~~l~~~a~S-~~rv~ivE~mGr~~ 196 (197)
|+|||||||+++++++|++++.|+.| ++||||||+|||++
T Consensus 210 d~s~GFdTA~~~~~~~I~~i~~Da~s~~~~~~~VevMGR~a 250 (539)
T TIGR02477 210 ETSFGFDTACKIYSELIGNICRDALSAKKYWHFIRLMGRSA 250 (539)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCc
Confidence 99999999999999999999877776 56999999999986
No 18
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=4.2e-53 Score=394.55 Aligned_cols=175 Identities=22% Similarity=0.343 Sum_probs=163.3
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHH--HHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCc-eecccCCCCccC
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMG--IYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGT-VIGSARCSDFRE 78 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~--~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs-~LgssR~~~~~~ 78 (197)
+||++|||||||||++|+++++++ .+.+++||||++||+||+++ ++++|+++.++.|+++||+ +|||+|++ +.+
T Consensus 73 IgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~--~~~~Lt~~~v~~~~~~GG~~~LGssR~k-~~~ 149 (555)
T PRK07085 73 VGVILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNG--KYIEITEEVIDEYRNTGGFDMIGSGRTK-IET 149 (555)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCC--CeEECCHHHHhHHHhCCChhhhcCCCCC-CCC
Confidence 799999999999999999999865 46789999999999999999 9999999999999999998 99999998 567
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCC--
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGT-- 156 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~-- 156 (197)
++++++++++|++++||+||+||||||+++|++|+|+| ++++.+++|||||||||||++++
T Consensus 150 ~e~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~-----------------~~~~~~i~VIGIPkTIDNDl~~~~i 212 (555)
T PRK07085 150 EEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYF-----------------AKHGCKTQVIGVPKTIDGDLKNEFI 212 (555)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHH-----------------HHhCCCccEEEEeeeecCCCCCCcc
Confidence 88999999999999999999999999999999999764 55667999999999999999965
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhcc-CCcEEEEEecCCCC
Q psy5987 157 DMTIGTDSALHRIIEAIDAIVSTAYS-HQRTFIMEVMGRLK 196 (197)
Q Consensus 157 d~s~GfdTA~~~~~~~i~~l~~~a~S-~~rv~ivE~mGr~~ 196 (197)
|+|||||||++++++.|++++.|+.| ++||||||+|||++
T Consensus 213 d~s~GFdTA~~~~~~~I~~i~~Da~s~~~~~~~VevMGR~a 253 (555)
T PRK07085 213 ETSFGFDTATKTYSEMIGNISRDALSAKKYWHFIKLMGRSA 253 (555)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCh
Confidence 99999999999999999999888777 56999999999986
No 19
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=6.1e-53 Score=396.03 Aligned_cols=175 Identities=18% Similarity=0.232 Sum_probs=164.7
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHc--CCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCc-eecccCCCCccC
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYL--GCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGT-VIGSARCSDFRE 78 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~--g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs-~LgssR~~~~~~ 78 (197)
||||+||||||||||||+++++++... +++||||++||+||+++ ++++|+++.++.|+++||+ +|||+|.+ +.+
T Consensus 82 IgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~--~~v~Lt~~~v~~~~n~GG~~iLGSsR~~-l~~ 158 (610)
T PLN03028 82 VGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQ--KTLEITDDVLSTYKNQGGYDLLGRTKDQ-IRT 158 (610)
T ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCC--CeEECCHHHHHHHHhcCCchhccCcCCC-cCC
Confidence 899999999999999999999998755 78999999999999999 9999999999999999999 88999955 667
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCC--CC
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFC--GT 156 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~--g~ 156 (197)
++++++++++|++++||+||+||||||+++|++|+|+| ++++.+++|||||||||||++ ++
T Consensus 159 ~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~-----------------~~~~~~i~VIGIPKTIDNDL~~~~t 221 (610)
T PLN03028 159 TEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETF-----------------AEAKCKTKVVGVPVTLNGDLKNQFV 221 (610)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHH-----------------HHcCCCceEEEeceeeeCCCCCCCC
Confidence 88999999999999999999999999999999999754 566779999999999999998 79
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhccC-CcEEEEEecCCCC
Q psy5987 157 DMTIGTDSALHRIIEAIDAIVSTAYSH-QRTFIMEVMGRLK 196 (197)
Q Consensus 157 d~s~GfdTA~~~~~~~i~~l~~~a~S~-~rv~ivE~mGr~~ 196 (197)
|+|||||||++++++.|++++.||.|+ +||||||+|||++
T Consensus 222 d~s~GFdTA~k~~ae~I~ni~~dA~S~~~~~~~VevMGR~a 262 (610)
T PLN03028 222 ETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKA 262 (610)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEEeCCcch
Confidence 999999999999999999999999997 6999999999986
No 20
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=7.9e-53 Score=392.72 Aligned_cols=175 Identities=23% Similarity=0.274 Sum_probs=164.7
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHH--cCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCc-eecccCCCCccC
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIY--LGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGT-VIGSARCSDFRE 78 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~--~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs-~LgssR~~~~~~ 78 (197)
||||+|||||||||+||++++++++. .+++||||++||+||+++ ++++|+++.++.|+|+||+ +|||+|++ +.+
T Consensus 99 IGIv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~--~~v~Lt~~~v~~~~n~GG~dlLGS~R~k-~~~ 175 (568)
T PLN02251 99 IGVVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKC--KYVELTAEFIYPYRNQGGFDMICSGRDK-IET 175 (568)
T ss_pred EEEECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCC--CeEECCHHHhhhhhhCCCceEecccCCC-cCC
Confidence 89999999999999999999999964 488999999999999999 9999999999999999999 88999995 568
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCC-
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTD- 157 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d- 157 (197)
++++++++++|++++||+||+||||||+++|++|+|+| ++++.+++|||||||||||++++|
T Consensus 176 ~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~-----------------~~~g~~i~VIGVPKTIDNDL~~td~ 238 (568)
T PLN02251 176 PEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYF-----------------RAKNLKTRVIGCPKTIDGDLKSKEV 238 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHH-----------------HhcCCCeeEEEeCceEeCCCCCCcC
Confidence 89999999999999999999999999999999999754 556778999999999999999999
Q ss_pred -CCCCchhHHHHHHHHHHHHHHhhccCC-cEEEEEecCCCC
Q psy5987 158 -MTIGTDSALHRIIEAIDAIVSTAYSHQ-RTFIMEVMGRLK 196 (197)
Q Consensus 158 -~s~GfdTA~~~~~~~i~~l~~~a~S~~-rv~ivE~mGr~~ 196 (197)
+|||||||++++++.|++++.||.|++ +|||||+|||++
T Consensus 239 e~s~GFdTA~k~~a~~I~ni~~da~S~~k~~~~VevMGR~a 279 (568)
T PLN02251 239 PTSFGFDTACKIYSEMIGNVMIDARSTGKYYHFVRLMGRAA 279 (568)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhCCEEEEEEeCCCch
Confidence 699999999999999999999999987 567999999986
No 21
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=9.7e-53 Score=391.22 Aligned_cols=175 Identities=23% Similarity=0.304 Sum_probs=163.8
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHH--cCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCc-eecccCCCCccC
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIY--LGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGT-VIGSARCSDFRE 78 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~--~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs-~LgssR~~~~~~ 78 (197)
+||++||||||||||+|+++++++.. .+++||||++||+||+++ ++++|++++++.|+++||+ +|||+|++ +.+
T Consensus 75 IgIl~SGG~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~--~~i~Lt~~~v~~~~~~GGsd~LGs~R~k-~~~ 151 (550)
T cd00765 75 IGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKC--DYIELNAEYIQPYRNTGGFDMICSGRTK-IET 151 (550)
T ss_pred EEEECCCCCcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCC--CeEECCHHHHhHHHhCCChhhhcCcCCC-CCC
Confidence 79999999999999999999999864 488999999999999999 9999999999999999999 99999998 467
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCC--
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGT-- 156 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~-- 156 (197)
++++++++++|++++||+||+||||||+++|++|+|+| ++++.+++|||||||||||++++
T Consensus 152 ~e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~-----------------~~~g~~i~VIGVPKTIDNDl~~t~i 214 (550)
T cd00765 152 EDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENF-----------------RSKGLKTRVIGVPKTIDGDLKNKEI 214 (550)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHH-----------------HhcCCCceEEEEeeeecCCCCCCCC
Confidence 88999999999999999999999999999999999754 55677899999999999999995
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhcc-CCcEEEEEecCCCC
Q psy5987 157 DMTIGTDSALHRIIEAIDAIVSTAYS-HQRTFIMEVMGRLK 196 (197)
Q Consensus 157 d~s~GfdTA~~~~~~~i~~l~~~a~S-~~rv~ivE~mGr~~ 196 (197)
|+|||||||++++++.|++++.|+.| ++||||||+|||++
T Consensus 215 d~s~GFdTA~k~~a~~I~ni~~Da~s~~~~~~~VEvMGR~a 255 (550)
T cd00765 215 ETSFGFDTATKIYSELIGNVMRDARSTGKYWHFVKLMGRSA 255 (550)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCch
Confidence 99999999999999999999988776 67999999999986
No 22
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=1.5e-52 Score=401.38 Aligned_cols=172 Identities=33% Similarity=0.573 Sum_probs=162.3
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
|||+||||||||||++|++++++++.+|++||||++||+||+++ ++++|+|++++.|.++|||+|||+|+++ +++
T Consensus 392 IaIltsGG~apGmNaairavv~~a~~~g~~v~gi~~G~~GL~~~--~~~~l~~~~v~~~~~~GGt~LGT~R~~~---~~~ 466 (762)
T cd00764 392 IAIVNVGAPAAGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAKG--QIVELGWIDVGGWTGRGGSELGTKRTLP---KKD 466 (762)
T ss_pred EEEEecCCCchhHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCC--CcccCCHHHHHHHHhCCcccccccCCCc---HHH
Confidence 79999999999999999999999999999999999999999999 9999999999999999999999999985 478
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhc--CCceEEEeeeecccCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKY--CHLHIAGLVGSIDNDFCGTDMT 159 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~--~~i~vvgiPkTIDNDi~g~d~s 159 (197)
+++++++|++++||+||+||||||+++|++|+|+ ++++ .+++||+||||||||+++||+|
T Consensus 467 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~------------------~~~y~~~~i~vVgIPkTIDNDv~gTd~s 528 (762)
T cd00764 467 LETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREA------------------REQYEEFCIPMVLIPATVSNNVPGTDFS 528 (762)
T ss_pred HHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHH------------------HhhCCCCCccEEEecccccCCCCCCcCC
Confidence 9999999999999999999999999999999863 2222 4799999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhccCC-cEEEEEecCCCC
Q psy5987 160 IGTDSALHRIIEAIDAIVSTAYSHQ-RTFIMEVMGRLK 196 (197)
Q Consensus 160 ~GfdTA~~~~~~~i~~l~~~a~S~~-rv~ivE~mGr~~ 196 (197)
||||||+|+++++||+++++|.|++ ||||||+|||++
T Consensus 529 iGfdTAln~~~~~id~i~~tA~s~~~RvfVVEvMGR~~ 566 (762)
T cd00764 529 LGSDTALNALMKYCDRIKQSASGTKRRVFIVETMGGYC 566 (762)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCeEEEEEeCCCCc
Confidence 9999999999999999999999865 999999999985
No 23
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=2.5e-52 Score=400.54 Aligned_cols=174 Identities=28% Similarity=0.454 Sum_probs=162.3
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
|||+||||||||||++|++++++++++|++||||++||+||+++ ++.+|+|.+++.|.++|||+|||+|+.+ +++
T Consensus 392 IaIltsGG~apGmNaair~vv~~a~~~g~~V~Gi~~G~~GL~~~--~~~~l~~~~v~~~~~~GGt~LgtsR~~~---~~~ 466 (745)
T TIGR02478 392 IAIIHVGAPAGGMNAATRSAVRYAIARGHTVIAIHNGFSGLARG--DVRELTWSDVEGWVGEGGSELGTNRELP---GKD 466 (745)
T ss_pred EEEEecCCCchhHHHHHHHHHHHHHhCCCEEEEEecChhhhccC--CeecCCHHHHHHHHhcCCcccccCCCCc---hhH
Confidence 79999999999999999999999999999999999999999999 8999999999999999999999999865 568
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
+++++++|++++||+||+||||||+++|.+|+++. .+....+++||+||||||||+++||+|||
T Consensus 467 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~----------------~~~~~~~i~vvgIPkTIDNDi~gtd~t~G 530 (745)
T TIGR02478 467 LGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAR----------------EKYPAFRIPMVVIPATISNNVPGTEYSLG 530 (745)
T ss_pred HHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHH----------------hhCCCCCccEEEecccccCCCCCCccCCC
Confidence 99999999999999999999999999999998631 11123479999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhccC-CcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVSTAYSH-QRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S~-~rv~ivE~mGr~~ 196 (197)
||||++++++++|+++++|.|+ +||||||+|||++
T Consensus 531 fdTA~~~~~~~id~i~~ta~s~~~rv~iVEvMGR~~ 566 (745)
T TIGR02478 531 SDTALNEITEYCDNIKQSASASKRRVFVVETMGGYS 566 (745)
T ss_pred HHHHHHHHHHHHHHHHHhhHhcCCcEEEEEecCccc
Confidence 9999999999999999999986 6999999999985
No 24
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=6.5e-50 Score=393.98 Aligned_cols=175 Identities=20% Similarity=0.284 Sum_probs=165.3
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHH--HcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCc-eecccCCCCccC
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGI--YLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGT-VIGSARCSDFRE 78 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~--~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs-~LgssR~~~~~~ 78 (197)
||||+|||||||||+||+++++++. +++++||||++||+||+++ ++++|+++.++.|+++||+ +|||+|.+ +.+
T Consensus 105 IGILtSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~--~~ieLt~~~V~~i~n~GGt~iLGS~R~k-l~~ 181 (1328)
T PTZ00468 105 IGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSE--RYRELTEDDINGILNQGGFNIICSGRHK-IET 181 (1328)
T ss_pred EEEECcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCC--CeEeCCHHHHHHHHhCCCcccccCcCCC-CCC
Confidence 8999999999999999999999976 6788999999999999999 9999999999999999997 99999997 668
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCC--C
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCG--T 156 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g--~ 156 (197)
++++++++++|++++||+||+||||||+++|++|+|+| ++.+.+++|||||||||||+++ +
T Consensus 182 ee~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~-----------------~~~g~~I~VIGIPKTIDNDL~g~~t 244 (1328)
T PTZ00468 182 EEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYF-----------------KRNSSSTVVVGCPKTIDGDLKNEVI 244 (1328)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHH-----------------HhcCCCeeEEEEeEEEcCCCCCCcC
Confidence 88999999999999999999999999999999999754 5566789999999999999996 8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhcc-CCcEEEEEecCCCC
Q psy5987 157 DMTIGTDSALHRIIEAIDAIVSTAYS-HQRTFIMEVMGRLK 196 (197)
Q Consensus 157 d~s~GfdTA~~~~~~~i~~l~~~a~S-~~rv~ivE~mGr~~ 196 (197)
|+|||||||++++++.|++++.+|.| ++||||||+|||++
T Consensus 245 D~S~GFdTA~k~iae~I~nl~~~A~S~~~rv~~VEVMGR~A 285 (1328)
T PTZ00468 245 ETSFGYDTAVKTYSEQIGSIMDAIKTEGYGYYFVRLMGRSA 285 (1328)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCcch
Confidence 99999999999999999999999998 78999999999986
No 25
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.2e-48 Score=387.22 Aligned_cols=175 Identities=22% Similarity=0.314 Sum_probs=162.9
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHH--cCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCc-eecccCCCCccC
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIY--LGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGT-VIGSARCSDFRE 78 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~--~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs-~LgssR~~~~~~ 78 (197)
|||++|||||||||++|+++++++.. .+++||||++||+||+++ ++++|+|++++.|+++||+ +|||+|.+. .+
T Consensus 180 IgIl~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~--~~veLt~~~V~~~~n~GGs~iLGSgR~k~-~~ 256 (1419)
T PTZ00287 180 IGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSK--NYVTITDSLMNRFRNLGGFNMLWSGRGKV-RN 256 (1419)
T ss_pred EEEEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCC--CeEECCHHHHhhHHhCCChhHhhCCCCCC-CC
Confidence 89999999999999999999999964 488999999999999999 9999999999999999998 799999876 56
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCC--CC
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFC--GT 156 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~--g~ 156 (197)
++++++++++|++++||+||+||||||+++|++|+|+| ++++.+++|||||||||||++ +|
T Consensus 257 ~e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~-----------------~~~gi~i~VIGIPKTIDNDL~~~gT 319 (1419)
T PTZ00287 257 KDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYF-----------------AERQIPISIIGIPKTIDGDLKSEAI 319 (1419)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHH-----------------HhcCCCeeEEEEeeeecCCCCCCCC
Confidence 78999999999999999999999999999999998754 556678899999999999999 69
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhcc-CCcEEEEEecCCCC
Q psy5987 157 DMTIGTDSALHRIIEAIDAIVSTAYS-HQRTFIMEVMGRLK 196 (197)
Q Consensus 157 d~s~GfdTA~~~~~~~i~~l~~~a~S-~~rv~ivE~mGr~~ 196 (197)
|+|||||||++++++.|++++.|+.| +++|||||+|||++
T Consensus 320 D~S~GFDTA~n~iae~I~ni~~D~~Ss~~~~~VVEVMGR~A 360 (1419)
T PTZ00287 320 EISFGFDTATKTYSEVIGNLCTDVKTGHNVYHVVRVMGRSA 360 (1419)
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEECCCcc
Confidence 99999999999999999999998776 67889999999986
No 26
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.3e-48 Score=385.17 Aligned_cols=174 Identities=18% Similarity=0.268 Sum_probs=162.0
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHc-CCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCcee-cccCCCCccCh
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYL-GCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVI-GSARCSDFREK 79 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~-g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~L-gssR~~~~~~~ 79 (197)
||||+||||||||||||+++++++... |+ ++|+ .||.||+++ ++++|+.++++.++++||++| ||+|..++.++
T Consensus 839 IGVLtSGGdAPG~NnVIrgvv~~a~~~~g~-~~gf-~G~~GLl~~--~~i~Lt~~~V~~i~n~GGtiLlgssR~~~f~t~ 914 (1419)
T PTZ00287 839 IGIVFLSRQAPGAMNVLCGLYRRLKLLKGV-CIAF-YGLYGLLNN--KYIIIDDDNIAKHVNQGGLELTGNSPEHSLFDK 914 (1419)
T ss_pred EEEECcCCCcHhHHHHHHHHHHHHHHhCCe-EEEE-eCchhhcCC--CeEECCHHHHhhHHHcCCeeecCCcCCCCCCCH
Confidence 799999999999999999999999644 76 4665 599999999 999999999999999999988 99999888889
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCC--CC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCG--TD 157 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g--~d 157 (197)
+.+++++++|++++||+||+||||||++.|+.|+|+| ++++.+++|||||||||||+++ +|
T Consensus 915 e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f-----------------~~~gi~i~VIGVPkTIDNDL~~~~tD 977 (1419)
T PTZ00287 915 ENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYF-----------------LEKKIPTSVVGIPLTGSNNLIHELIE 977 (1419)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHH-----------------HhcCCCccEEEeCceeeCCCCCCCCc
Confidence 9999999999999999999999999999999999764 5566778899999999999988 99
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhccCCc-EEEEEecCCCC
Q psy5987 158 MTIGTDSALHRIIEAIDAIVSTAYSHQR-TFIMEVMGRLK 196 (197)
Q Consensus 158 ~s~GfdTA~~~~~~~i~~l~~~a~S~~r-v~ivE~mGr~~ 196 (197)
+|||||||+++++++|++|+.||.||+| |||||+|||++
T Consensus 978 ~TiGFDTAv~~~seaI~nL~~dA~S~~ry~~fVEVMGR~a 1017 (1419)
T PTZ00287 978 TCVGFDSSTKVYASLIGNVLTDAVSMPKYWHFIRLMGRSP 1017 (1419)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEECCCch
Confidence 9999999999999999999999999875 99999999986
No 27
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=5.5e-42 Score=338.07 Aligned_cols=176 Identities=11% Similarity=0.137 Sum_probs=156.0
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECC----hhhhhhhhhhcCceeccc------
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEAN----WSSVSSIIHKGGTVIGSA------ 71 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~----~~~v~~~~~~gGs~Lgss------ 71 (197)
+|||+.|||+||+|+||++++.++.+.| |+||++||.||+++....+.|+ .+.++.++|+||++|+++
T Consensus 678 vgIv~~g~~aPG~NnVI~g~~~~~~~~g--vig~~~G~~~L~~~~~~~v~l~~~~~~~~~~~~~n~GG~~~~~~~~~~~~ 755 (1328)
T PTZ00468 678 LGLILSCLSTPGTQNVICGLVNGLPSLK--QLIVFKSLSDFYEGKALKVDLTSEGSLEFFENSLNSGGCIFPNGVEIKMN 755 (1328)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhCC--cEEEEechhHHhcCCceEEecccchhHHHHHHHHhcCCeeeecccccccc
Confidence 6999999999999999999999999888 9999999999999955566676 578999999999999999
Q ss_pred ----CCCCccC----hh---------------HHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCC
Q psy5987 72 ----RCSDFRE----KA---------------GRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGS 128 (197)
Q Consensus 72 ----R~~~~~~----~~---------------~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~ 128 (197)
|+.|.+. ++ +.+.+.+.|++++||+||+||||||++.|+.|+|+|
T Consensus 756 ~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~------------ 823 (1328)
T PTZ00468 756 VSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQL------------ 823 (1328)
T ss_pred ccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHH------------
Confidence 8776654 23 457899999999999999999999999999999864
Q ss_pred CcHHHHhh-----cCCceEEEeeeecccCCCC--CCCCCCchhHHHHHHHHHHHHHHhhc-cCCcEEEEEecCCCC
Q psy5987 129 ITKDQREK-----YCHLHIAGLVGSIDNDFCG--TDMTIGTDSALHRIIEAIDAIVSTAY-SHQRTFIMEVMGRLK 196 (197)
Q Consensus 129 ~~~~~~~~-----~~~i~vvgiPkTIDNDi~g--~d~s~GfdTA~~~~~~~i~~l~~~a~-S~~rv~ivE~mGr~~ 196 (197)
+++ +.+++|||||||||||+++ +|+|||||||++++++.|+++..|++ ||+||||||+|||++
T Consensus 824 -----~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~a 894 (1328)
T PTZ00468 824 -----ICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKT 894 (1328)
T ss_pred -----hhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcCh
Confidence 222 2589999999999999998 99999999999999999977766555 578999999999986
No 28
>KOG2440|consensus
Probab=100.00 E-value=2.3e-34 Score=270.22 Aligned_cols=191 Identities=63% Similarity=0.952 Sum_probs=185.9
Q ss_pred EEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhHHH
Q psy5987 4 QVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAGRL 83 (197)
Q Consensus 4 Il~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~ 83 (197)
|+|||||+||||++++++++.+.+.|+++|++++||+||+++...+.+++|..++.|...||+.+|+.|.+.|+..+.+.
T Consensus 1 v~tsggd~~gmnaavr~~vr~~i~~g~~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr~ 80 (666)
T KOG2440|consen 1 VLTSGGDSQGMNAAVRAVVRMGIYRGCKVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGRL 80 (666)
T ss_pred CcCCCCCCCCccHHHHHHHHhccccCceEEEEecccccccccccchhhcchhhhCCcccCCCccccccccccccccccee
Confidence 68999999999999999999999999999999999999999855799999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCch
Q psy5987 84 KAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTD 163 (197)
Q Consensus 84 ~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~Gfd 163 (197)
++..++-+.+|+.|+++||++++..|+.+.++|..+++|+++++.|+.+....+..+.|++|+-|||||++++|.++|-|
T Consensus 81 ~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~d 160 (666)
T KOG2440|consen 81 AAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGID 160 (666)
T ss_pred ccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 164 SALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 164 TA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
||+.. +++|.|.+||.||.|.|++|+|||+.
T Consensus 161 sal~r--e~id~~~~ta~sh~RgFv~evmgr~c 191 (666)
T KOG2440|consen 161 SALHR--EAIDAITSTAQSHSRGFVAEVMGRHC 191 (666)
T ss_pred cchhh--hhhhhhhhhhccCcceEEeeehhhcc
Confidence 99999 99999999999999999999999974
No 29
>KOG2440|consensus
Probab=99.87 E-value=3.3e-22 Score=188.43 Aligned_cols=175 Identities=23% Similarity=0.363 Sum_probs=155.5
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
.|++..|-|+.|||++++++++++...|.++|++.+||+||.++ ...++.|.+|..|..+||+.+||.|..| ++.+
T Consensus 375 ~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~d--~~~~~~~~dv~~w~~~ggs~~gtk~~~~--e~~~ 450 (666)
T KOG2440|consen 375 GAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAKD--ALGELIWKDVGLWLSQGGSALGTKRETP--EKMD 450 (666)
T ss_pred cceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhhh--hhhhhHHHHhhcccccCchhheecccCc--cccc
Confidence 58899999999999999999999999999999999999999998 9999999999999999999999999754 2347
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
.+.+..+|.++++++|+++||.-++.....++.. .....++.++.|.+|.|+.|++|+|++|.|
T Consensus 451 ~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~----------------~~~yt~f~i~~v~ip~t~snnvpgt~~s~g 514 (666)
T KOG2440|consen 451 LKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGA----------------RAGYTGFDIPMVNIPATYSNNVPGTEFSLG 514 (666)
T ss_pred HHHhHHHHHHhccccceeecchHHHHHHHHHhhh----------------hcCCCCcccceEEeeeeecCCccccccccc
Confidence 8999999999999999999999999888777642 112233467889999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHh-hccCCcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVST-AYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~-a~S~~rv~ivE~mGr~~ 196 (197)
-|||.|.+++.++..... ..+.+++|++|+||.+.
T Consensus 515 vdt~~N~~~~~~d~t~Q~a~~T~~~vf~~e~~gg~~ 550 (666)
T KOG2440|consen 515 VDTALNAWARVCDSTKQSAFGTKRRVFVVETMGGYS 550 (666)
T ss_pred cchhHhhhhhhhhhccCCcccccceeEEEEecCCCc
Confidence 999999999999999655 44678999999999763
No 30
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.26 E-value=0.074 Score=46.73 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=39.1
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhH--HHHHH
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSA--LHRII 170 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA--~~~~~ 170 (197)
+.|.+|++|||||+-.|..... ..+++|+||-. -++||.|. .+.+-
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~----------------------~~~~PilGIN~----------G~lGFLt~~~~~~~~ 111 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA----------------------EYDKFVLGIHA----------GHLGFLTDITVDEAE 111 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc----------------------CCCCcEEEEeC----------CCcccCCcCCHHHHH
Confidence 6899999999999765543321 13688888842 27999987 46667
Q ss_pred HHHHHHHHhh
Q psy5987 171 EAIDAIVSTA 180 (197)
Q Consensus 171 ~~i~~l~~~a 180 (197)
+.++++...-
T Consensus 112 ~~l~~i~~g~ 121 (287)
T PRK14077 112 KFFQAFFQGE 121 (287)
T ss_pred HHHHHHHcCC
Confidence 7777775443
No 31
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.66 E-value=0.2 Score=43.55 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCC-----cEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCC
Q psy5987 82 RLKAAKNLIDRGI-----TNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGT 156 (197)
Q Consensus 82 ~~~~~~~l~~~~I-----~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~ 156 (197)
.+++.+.++.+++ |.++++|||||+-.|..... ..+++|+||-. |
T Consensus 17 ~~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~----------------------~~~iPilGIN~-------G- 66 (259)
T PRK00561 17 LPKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN----------------------CAGCKVVGINT-------G- 66 (259)
T ss_pred HHHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc----------------------CCCCcEEEEec-------C-
Confidence 4555666666666 99999999999987654321 24788988852 2
Q ss_pred CCCCCchhHH--HHHHH-HHHHH
Q psy5987 157 DMTIGTDSAL--HRIIE-AIDAI 176 (197)
Q Consensus 157 d~s~GfdTA~--~~~~~-~i~~l 176 (197)
++||.|.. +.+-+ .++.+
T Consensus 67 --~lGFL~~~~~~~~~~~~~~~l 87 (259)
T PRK00561 67 --HLGFYTSFNETDLDQNFANKL 87 (259)
T ss_pred --CCccccccCHHHHHHHHHHHH
Confidence 69999854 44444 44444
No 32
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=94.64 E-value=0.15 Score=43.95 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhCC------cEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCC
Q psy5987 81 GRLKAAKNLIDRGI------TNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFC 154 (197)
Q Consensus 81 ~~~~~~~~l~~~~I------~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~ 154 (197)
..+.+.+-.++|++ |.++++|||||+-.|..... ..+++|+||-.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~----------------------~~~~PvlGIN~------- 57 (246)
T PRK04761 7 AQAALEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM----------------------NSGKPVYGMNR------- 57 (246)
T ss_pred HHHHHHHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc----------------------CCCCeEEEEeC-------
Confidence 34444555566677 99999999999987643321 13688888854
Q ss_pred CCCCCCCchhH---HHHHHHHHHHHH
Q psy5987 155 GTDMTIGTDSA---LHRIIEAIDAIV 177 (197)
Q Consensus 155 g~d~s~GfdTA---~~~~~~~i~~l~ 177 (197)
| ++||.|. .+.+.+.++++.
T Consensus 58 G---~lGFL~~~~~~~e~~~~l~~~~ 80 (246)
T PRK04761 58 G---SVGFLMNEYSEDDLLERIAAAE 80 (246)
T ss_pred C---CCCcccCCCCHHHHHHHHHHhh
Confidence 1 6899874 355555555554
No 33
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.27 E-value=2.6 Score=34.78 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=72.8
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHH--cCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccC
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIY--LGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFRE 78 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~--~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~ 78 (197)
+||++...-..|-...++.++.+.+.. .+++++-+ .+.. +
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~----------------------------------~~~~----~ 42 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVV----------------------------------SADY----D 42 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEEEc----------------------------------cCCC----C
Confidence 588888887888999999999998877 44443211 1111 2
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCC
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDM 158 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~ 158 (197)
++......+.+...++|++|+.+.+... ....+. + .++ .+++||.+ |.+.++..+
T Consensus 43 ~~~~~~~i~~~~~~~~dgiIi~~~~~~~-~~~~i~--------~----------~~~--~~ipvv~~----~~~~~~~~~ 97 (271)
T cd06321 43 LNKQVSQIDNFIAAKVDLILLNAVDSKG-IAPAVK--------R----------AQA--AGIVVVAV----DVAAEGADA 97 (271)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCChhH-hHHHHH--------H----------HHH--CCCeEEEe----cCCCCCccc
Confidence 3344567777888999999987754321 111221 1 122 36777766 333333345
Q ss_pred CCCchhHHHHHHHHHHHHHHhhccCCcEEEEE
Q psy5987 159 TIGTDSALHRIIEAIDAIVSTAYSHQRTFIME 190 (197)
Q Consensus 159 s~GfdTA~~~~~~~i~~l~~~a~S~~rv~ivE 190 (197)
++++|-. .....+.+.+......++++.++-
T Consensus 98 ~V~~d~~-~~g~~~~~~l~~~~~g~~~i~~i~ 128 (271)
T cd06321 98 TVTTDNV-QAGEISCQYLADRLGGKGNVAILN 128 (271)
T ss_pred eeeechH-HHHHHHHHHHHHHhCCCceEEEEe
Confidence 6777642 344444444444433567777663
No 34
>PLN02929 NADH kinase
Probab=94.07 E-value=0.2 Score=44.44 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=40.1
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEee---eecccCC-----CCCCCCCCchh
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLV---GSIDNDF-----CGTDMTIGTDS 164 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiP---kTIDNDi-----~g~d~s~GfdT 164 (197)
+.|.+|++|||||+-.|.... ..+++|+||- .+.+.-- .....++||-+
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~-----------------------~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~ 120 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFL-----------------------DDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLC 120 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHc-----------------------CCCCcEEEEECCCcccccccccccccccccCccccc
Confidence 568999999999998765332 1478999983 2222210 00113899999
Q ss_pred H--HHHHHHHHHHHHHh
Q psy5987 165 A--LHRIIEAIDAIVST 179 (197)
Q Consensus 165 A--~~~~~~~i~~l~~~ 179 (197)
+ .+.+-+.++++...
T Consensus 121 ~~~~~~~~~~L~~il~g 137 (301)
T PLN02929 121 AATAEDFEQVLDDVLFG 137 (301)
T ss_pred cCCHHHHHHHHHHHHcC
Confidence 8 45555666666543
No 35
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.99 E-value=0.29 Score=42.50 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhC-------CcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCC
Q psy5987 82 RLKAAKNLIDRG-------ITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFC 154 (197)
Q Consensus 82 ~~~~~~~l~~~~-------I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~ 154 (197)
.+++.+.|++++ .|.+|++|||||+-.|..... ....+++++||..
T Consensus 17 ~~~l~~~l~~~g~~~~~~~~Dlvi~iGGDGT~L~a~~~~~--------------------~~~~~iPilGIN~------- 69 (265)
T PRK04885 17 ASKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYE--------------------NQLDKVRFVGVHT------- 69 (265)
T ss_pred HHHHHHHHHHcCCccCCcCCCEEEEECCcHHHHHHHHHhc--------------------ccCCCCeEEEEeC-------
Confidence 445555565544 589999999999976653321 1114788988863
Q ss_pred CCCCCCCchhHH--HHHHHHHHHHHHh
Q psy5987 155 GTDMTIGTDSAL--HRIIEAIDAIVST 179 (197)
Q Consensus 155 g~d~s~GfdTA~--~~~~~~i~~l~~~ 179 (197)
-++||.|.. +.+-+.++++...
T Consensus 70 ---G~lGFL~~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 70 ---GHLGFYTDWRPFEVDKLVIALAKD 93 (265)
T ss_pred ---CCceecccCCHHHHHHHHHHHHcC
Confidence 369999974 4466667666544
No 36
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=93.70 E-value=3 Score=33.47 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=73.4
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
+|++..+...|-.+..+.++-+.+...|+++.-+. ... +++.
T Consensus 2 ig~v~~~~~~~~~~~~~~g~~~~~~~~g~~l~~~~----------------------------------~~~----~~~~ 43 (264)
T cd01537 2 IGVLVPDLDNPFFAQVLKGIEEAAKAAGYQVLLAN----------------------------------SQN----DAEK 43 (264)
T ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHcCCeEEEEe----------------------------------CCC----CHHH
Confidence 78888887788889999999988877665543220 000 1234
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHH-HHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTG-ANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTI 160 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~-a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~ 160 (197)
..+.++.+.+.++|++|+.+.+.+... ...+. ..++++|.+..+.++ .....++
T Consensus 44 ~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~l~-----------------------~~~ip~v~~~~~~~~--~~~~~~v 98 (264)
T cd01537 44 QLSALENLIARGVDGIIIAPSDLTAPTIVKLAR-----------------------KAGIPVVLVDRDIPD--GDRVPSV 98 (264)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCcchhHHHHhh-----------------------hcCCCEEEeccCCCC--CcccceE
Confidence 556677777789999999887766543 22111 136788877665543 1223455
Q ss_pred CchhHHHHHHHHHHHHHHhhccCCcEEEEE
Q psy5987 161 GTDSALHRIIEAIDAIVSTAYSHQRTFIME 190 (197)
Q Consensus 161 GfdTA~~~~~~~i~~l~~~a~S~~rv~ivE 190 (197)
++|.. +......+.+.... ++++.++-
T Consensus 99 ~~d~~-~~~~~~~~~l~~~g--~~~i~~i~ 125 (264)
T cd01537 99 GSDNE-QAGYLAGEHLAEKG--HRRIALLA 125 (264)
T ss_pred ecCcH-HHHHHHHHHHHHhc--CCcEEEEE
Confidence 55543 33334444444332 67776653
No 37
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=93.34 E-value=0.072 Score=46.32 Aligned_cols=60 Identities=27% Similarity=0.533 Sum_probs=40.6
Q ss_pred HHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHH
Q psy5987 87 KNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSAL 166 (197)
Q Consensus 87 ~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~ 166 (197)
..+...+.|.+|++|||||+..+..... ..+++|++|+. | +.||.+..
T Consensus 70 ~~~~~~~~D~ii~lGGDGT~L~~~~~~~----------------------~~~~Pilgin~-------G---~lgfl~~~ 117 (285)
T PF01513_consen 70 EEMLEEGVDLIIVLGGDGTFLRAARLFG----------------------DYDIPILGINT-------G---TLGFLTEF 117 (285)
T ss_dssp HHHHCCCSSEEEEEESHHHHHHHHHHCT----------------------TST-EEEEEES-------S---SSTSSSSE
T ss_pred hhhcccCCCEEEEECCCHHHHHHHHHhc----------------------cCCCcEEeecC-------C---CccccccC
Confidence 3456789999999999999988764421 13789999984 2 56666553
Q ss_pred --HHHHHHHHHHHH
Q psy5987 167 --HRIIEAIDAIVS 178 (197)
Q Consensus 167 --~~~~~~i~~l~~ 178 (197)
+.+.+.++.+..
T Consensus 118 ~~~~~~~~l~~~~~ 131 (285)
T PF01513_consen 118 EPEDIEEALEKILA 131 (285)
T ss_dssp EGCGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc
Confidence 455555555554
No 38
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=93.20 E-value=0.2 Score=45.22 Aligned_cols=54 Identities=19% Similarity=0.367 Sum_probs=43.8
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFC 154 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~ 154 (197)
+.++...+++.+.++++|-+++.|||||.+....-. ..+++|.|||.=.-|-..
T Consensus 85 Ta~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av-----------------------~~~vPvLGipaGvk~~Sg 138 (355)
T COG3199 85 TAEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV-----------------------GADVPVLGIPAGVKNYSG 138 (355)
T ss_pred cHHHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc-----------------------cCCCceEeeccccceecc
Confidence 456788899999999999999999999998864221 358999999987766654
No 39
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.84 E-value=0.57 Score=40.71 Aligned_cols=56 Identities=23% Similarity=0.231 Sum_probs=36.0
Q ss_pred CcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhH--HHHHHH
Q psy5987 94 ITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSA--LHRIIE 171 (197)
Q Consensus 94 I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA--~~~~~~ 171 (197)
.|.++++|||||+-.|..... ...+++++||.. +-++||.|. .+.+-+
T Consensus 40 ~D~vi~lGGDGT~L~a~~~~~---------------------~~~~~pilgIn~---------~G~lGFL~~~~~~~~~~ 89 (264)
T PRK03501 40 ANIIVSIGGDGTFLQAVRKTG---------------------FREDCLYAGIST---------KDQLGFYCDFHIDDLDK 89 (264)
T ss_pred ccEEEEECCcHHHHHHHHHhc---------------------ccCCCeEEeEec---------CCCCeEcccCCHHHHHH
Confidence 679999999999976654321 011567777743 138999876 355556
Q ss_pred HHHHHHHh
Q psy5987 172 AIDAIVST 179 (197)
Q Consensus 172 ~i~~l~~~ 179 (197)
.++++...
T Consensus 90 ~l~~i~~g 97 (264)
T PRK03501 90 MIQAITKE 97 (264)
T ss_pred HHHHHHcC
Confidence 66666543
No 40
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.81 E-value=0.59 Score=40.26 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=35.4
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHHH--HHH
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALH--RII 170 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~~--~~~ 170 (197)
+.|.++++|||||+-.|... .+++|+||- .| ++||.|..+ .+-
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~-------------------------~~~Pilgin-------~G---~lGfl~~~~~~~~~ 85 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKK-------------------------VGTPLVGFK-------AG---RLGFLSSYTLEEID 85 (256)
T ss_pred CCCEEEEECCcHHHHHHHHH-------------------------cCCCEEEEe-------CC---CCccccccCHHHHH
Confidence 67999999999999765321 167888885 22 599998754 345
Q ss_pred HHHHHHHH
Q psy5987 171 EAIDAIVS 178 (197)
Q Consensus 171 ~~i~~l~~ 178 (197)
+.++++..
T Consensus 86 ~~l~~~~~ 93 (256)
T PRK14075 86 RFLEDLKN 93 (256)
T ss_pred HHHHHHHc
Confidence 55666544
No 41
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.66 E-value=0.31 Score=42.94 Aligned_cols=57 Identities=23% Similarity=0.425 Sum_probs=41.1
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHH--HHHH
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSAL--HRII 170 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~--~~~~ 170 (197)
+.|.+|++|||||+-.|..... ..+++|+||-. -++||.|.+ +.+-
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~----------------------~~~~PilGIN~----------G~lGFLt~~~~~~~~ 111 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG----------------------NSNIPILGINT----------GRLGFLATVSKEEIE 111 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc----------------------CCCCCEEEEec----------CCCCcccccCHHHHH
Confidence 6899999999999876654321 13788998854 269999986 4677
Q ss_pred HHHHHHHHhhc
Q psy5987 171 EAIDAIVSTAY 181 (197)
Q Consensus 171 ~~i~~l~~~a~ 181 (197)
+.++++.....
T Consensus 112 ~~l~~i~~g~~ 122 (292)
T PRK01911 112 ETIDELLNGDY 122 (292)
T ss_pred HHHHHHHcCCc
Confidence 77777765543
No 42
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.61 E-value=0.27 Score=43.36 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=40.1
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhH--HHHHH
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSA--LHRII 170 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA--~~~~~ 170 (197)
+.|.+|++|||||+-.|..... ..+++|+||-. | ++||.|. .+.+.
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~----------------------~~~~PilGIN~-------G---~lGFL~~~~~~~~~ 115 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA----------------------PRAVPIIGINQ-------G---HLGFLTQIPREYMT 115 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc----------------------ccCCCEEEEec-------C---CCeEeeccCHHHHH
Confidence 6899999999999987754421 13788998853 2 6999997 45566
Q ss_pred HHHHHHHHh
Q psy5987 171 EAIDAIVST 179 (197)
Q Consensus 171 ~~i~~l~~~ 179 (197)
+.++++...
T Consensus 116 ~~l~~i~~g 124 (296)
T PRK04539 116 DKLLPVLEG 124 (296)
T ss_pred HHHHHHHcC
Confidence 677776544
No 43
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.86 E-value=0.47 Score=41.75 Aligned_cols=54 Identities=19% Similarity=0.386 Sum_probs=36.8
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHHH--HHH
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALH--RII 170 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~~--~~~ 170 (197)
+.|.+|++|||||+-.|..... ..+++|++|-. -++||.|.++ .+.
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~----------------------~~~~Pilgin~----------G~lGFl~~~~~~~~~ 110 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA----------------------RYDIKVIGINR----------GNLGFLTDLDPDNAL 110 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc----------------------CCCCeEEEEEC----------CCCCcccccCHHHHH
Confidence 6899999999999987654321 13678888753 2589988754 444
Q ss_pred HHHHHHHH
Q psy5987 171 EAIDAIVS 178 (197)
Q Consensus 171 ~~i~~l~~ 178 (197)
+.++++..
T Consensus 111 ~~l~~i~~ 118 (292)
T PRK03378 111 QQLSDVLE 118 (292)
T ss_pred HHHHHHHc
Confidence 55555543
No 44
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.58 E-value=0.4 Score=42.50 Aligned_cols=55 Identities=25% Similarity=0.453 Sum_probs=38.9
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhH--HHHHH
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSA--LHRII 170 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA--~~~~~ 170 (197)
+.|.+|++|||||+-.|..... ..+++|+||-. | ++||-|. .+.+.
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~----------------------~~~iPilGIN~-------G---~lGFLt~~~~~~~~ 115 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA----------------------PCGIPLLTINT-------G---HLGFLTEAYLNQLD 115 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc----------------------CCCCcEEEEeC-------C---CCcccccCCHHHHH
Confidence 6899999999999977654321 24788999842 2 7999986 45556
Q ss_pred HHHHHHHHh
Q psy5987 171 EAIDAIVST 179 (197)
Q Consensus 171 ~~i~~l~~~ 179 (197)
+.++++...
T Consensus 116 ~~l~~l~~g 124 (305)
T PRK02649 116 EAIDQVLAG 124 (305)
T ss_pred HHHHHHHcC
Confidence 666666443
No 45
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.32 E-value=0.44 Score=41.58 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=31.9
Q ss_pred hCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHHH
Q psy5987 92 RGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALH 167 (197)
Q Consensus 92 ~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~~ 167 (197)
.+.|.+|++|||||+-.|..+. ..+++|++||. | ++||.+.+.
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~-----------------------~~~~pi~gIn~-------G---~lGFl~~~~ 98 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKT-----------------------KKDIPILGINM-------G---TLGFLTEVE 98 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhc-----------------------CCCCeEEEEeC-------C---CCCccccCC
Confidence 3789999999999998664432 13789999984 2 568888754
No 46
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.20 E-value=0.43 Score=42.37 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=40.8
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHH--HHHH
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSAL--HRII 170 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~--~~~~ 170 (197)
+.|.+|++|||||+-.|..... ..+++|+||.. -++||.|.. +.+-
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~----------------------~~~~PilGIN~----------G~lGFL~~~~~~~~~ 119 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR----------------------AADVPVLGVNL----------GHVGFLAEAEAEDLD 119 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc----------------------cCCCcEEEEec----------CCCceeccCCHHHHH
Confidence 6899999999999987654421 13789999864 268998875 5666
Q ss_pred HHHHHHHHhh
Q psy5987 171 EAIDAIVSTA 180 (197)
Q Consensus 171 ~~i~~l~~~a 180 (197)
+.++++...-
T Consensus 120 ~~l~~i~~g~ 129 (306)
T PRK03372 120 EAVERVVDRD 129 (306)
T ss_pred HHHHHHHcCC
Confidence 7777775443
No 47
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.03 E-value=1 Score=43.19 Aligned_cols=55 Identities=29% Similarity=0.419 Sum_probs=38.6
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHH--HHHH
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSAL--HRII 170 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~--~~~~ 170 (197)
++|.+|++|||||+-.|..... ..+++|+||-. -++||.|.+ +.+.
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~----------------------~~~~PilGin~----------G~lGFL~~~~~~~~~ 395 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN----------------------GEEIPIICINM----------GTVGFLTEFSKEEIF 395 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc----------------------CCCCCEEEEcC----------CCCCcCcccCHHHHH
Confidence 5789999999999977654321 13788988843 379999975 4556
Q ss_pred HHHHHHHHh
Q psy5987 171 EAIDAIVST 179 (197)
Q Consensus 171 ~~i~~l~~~ 179 (197)
+.++++...
T Consensus 396 ~~l~~~~~g 404 (569)
T PRK14076 396 KAIDSIISG 404 (569)
T ss_pred HHHHHHHcC
Confidence 666666443
No 48
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=90.52 E-value=0.6 Score=44.22 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=38.8
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHH--HHHH
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSAL--HRII 170 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~--~~~~ 170 (197)
++|.+|+||||||+-.|..... ...++|+||. --++||-|.+ +.+-
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~----------------------~~~iPILGIN----------~G~LGFLt~i~~~e~~ 309 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK----------------------GPVPPVVPFS----------MGSLGFMTPFHSEQYR 309 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc----------------------cCCCcEEEEe----------CCCcceecccCHHHHH
Confidence 6899999999999987765421 1367888883 2379999874 4556
Q ss_pred HHHHHHHHh
Q psy5987 171 EAIDAIVST 179 (197)
Q Consensus 171 ~~i~~l~~~ 179 (197)
+.++++...
T Consensus 310 ~~Le~il~G 318 (508)
T PLN02935 310 DCLDAILKG 318 (508)
T ss_pred HHHHHHHcC
Confidence 666666543
No 49
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.51 E-value=0.64 Score=40.95 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=40.5
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhH--HHHHH
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSA--LHRII 170 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA--~~~~~ 170 (197)
+.|.++++|||||+..+..... ..+++|+||.. | ++||.|. .+.+.
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~----------------------~~~~Pvlgin~-------G---~lGFl~~~~~~~~~ 109 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA----------------------RHNVPVLGINR-------G---RLGFLTDIRPDELE 109 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc----------------------CCCCCEEEEeC-------C---cccccccCCHHHHH
Confidence 6899999999999977643321 24788999875 2 6999987 45567
Q ss_pred HHHHHHHHhh
Q psy5987 171 EAIDAIVSTA 180 (197)
Q Consensus 171 ~~i~~l~~~a 180 (197)
+.++++....
T Consensus 110 ~~l~~~~~g~ 119 (295)
T PRK01231 110 FKLAEVLDGH 119 (295)
T ss_pred HHHHHHHcCC
Confidence 7777776543
No 50
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=90.42 E-value=2.9 Score=37.26 Aligned_cols=54 Identities=13% Similarity=0.064 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDF 153 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi 153 (197)
+.+...++.+.+++.+.|.+|-|||--.+..|..++.. .++++|.||-|--.+-
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~----------------------~~~p~i~VPTtagtgs 115 (349)
T cd08550 62 STEEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR----------------------LDKPIVIVPTIASTCA 115 (349)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH----------------------cCCCEEEeCCccccCc
Confidence 45678899999999999999999999999998877631 2679999998865554
No 51
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=90.16 E-value=9.1 Score=31.25 Aligned_cols=68 Identities=9% Similarity=0.087 Sum_probs=48.6
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
.||++...-+.|-.+..+.++.+.+.+.|++++-+.. . .+++
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~----------------------------------~----~~~~ 42 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASAAGYSTIIGNS----------------------------------D----ENPE 42 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHHcCCEEEEEeC----------------------------------C----CCHH
Confidence 3788887767788888889999888888877763310 0 0123
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
......+.+...++|++|+.+.+...
T Consensus 43 ~~~~~~~~l~~~~vdgiIi~~~~~~~ 68 (265)
T cd06299 43 TENRYLDNLLSQRVDGIIVVPHEQSA 68 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCh
Confidence 34567778889999999999876543
No 52
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.69 E-value=10 Score=31.16 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=47.7
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
+||++...-+.|-.+.++.++-+.+.+.|++++-+. . .. +++
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--------~--------------------------~~----~~~ 42 (273)
T cd06292 1 LVGLLVPELSNPIFPAFAEAIEAALAQYGYTVLLCN--------T--------------------------YR----GGV 42 (273)
T ss_pred CEEEEeCCCcCchHHHHHHHHHHHHHHCCCEEEEEe--------C--------------------------CC----ChH
Confidence 578888887888899999999999888887765221 0 00 123
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
...+..+.|...++|++|+.+..
T Consensus 43 ~~~~~i~~l~~~~vdgiIi~~~~ 65 (273)
T cd06292 43 SEADYVEDLLARGVRGVVFISSL 65 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCC
Confidence 34567888888999999998754
No 53
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=89.04 E-value=11 Score=30.64 Aligned_cols=67 Identities=9% Similarity=0.076 Sum_probs=49.6
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
||+++......|-...+..++.+.+...|++++-+. . .. +++
T Consensus 1 ~i~~v~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~--------~--------------------------~~----~~~ 42 (267)
T cd06284 1 MILVLVPDIANPFFSEILKGIEDEAREAGYGVLLGD--------T--------------------------RS----DPE 42 (267)
T ss_pred CEEEEECCCCCccHHHHHHHHHHHHHHcCCeEEEec--------C--------------------------CC----ChH
Confidence 899999988899999999999999988888775321 0 10 122
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
....+.+.+...++|++++.+.+..
T Consensus 43 ~~~~~~~~~~~~~vdgiii~~~~~~ 67 (267)
T cd06284 43 REQEYLDLLRRKQADGIILLDGSLP 67 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCC
Confidence 3445677788889999999876544
No 54
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=89.03 E-value=1.3 Score=39.40 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCG 155 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g 155 (197)
+.+..+++.+.+++.+.|.+|-+||--.+..|..++.. .++++|.||-|.-+|-..
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~----------------------~~~p~i~iPTT~~t~s~~ 118 (339)
T cd08173 63 TYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAYK----------------------LGIPFISVPTAASHDGIA 118 (339)
T ss_pred CHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHh----------------------cCCCEEEecCcccCCccc
Confidence 46788999999999999999999999888888776521 368999999998765443
No 55
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=88.49 E-value=1.4 Score=39.24 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDF 153 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi 153 (197)
+.+...++.+.+++++.|.+|-+||--++..|..++.. .+++++.||-|--.+-
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~----------------------~~~P~iaIPTTagTgs 115 (351)
T cd08170 62 TRAEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY----------------------LGAPVVIVPTIASTDA 115 (351)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH----------------------cCCCEEEeCCccccCc
Confidence 34678999999999999999999999999999877631 2689999998864444
No 56
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=88.32 E-value=13 Score=30.39 Aligned_cols=66 Identities=14% Similarity=0.272 Sum_probs=41.5
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
+|++...-+.|-...++.++.+.+.+.|++++-.. +. .+++.
T Consensus 2 i~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----------------------------------~~----~~~~~ 43 (268)
T cd06298 2 VGVIIPDITNSYFAELARGIDDIATMYKYNIILSN----------------------------------SD----NDKEK 43 (268)
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHcCCeEEEEe----------------------------------CC----CCHHH
Confidence 56666655666677777777777666666554221 00 01233
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..++.+.+...++|++++.+.+.+
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~~ 67 (268)
T cd06298 44 ELKVLNNLLAKQVDGIIFMGGKIS 67 (268)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCc
Confidence 456667777899999999976543
No 57
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.28 E-value=1 Score=39.29 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=36.1
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHHH--HHH
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALH--RII 170 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~~--~~~ 170 (197)
+.|.+|++|||||+-.|..... ..+++|+||-. -++||.|..+ .+.
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~----------------------~~~~PilgIn~----------G~lGFL~~~~~~~~~ 89 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA----------------------KYDIPLIGINR----------GNLGFLTDIDPKNAY 89 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc----------------------cCCCcEEEEeC----------CCCcccccCCHHHHH
Confidence 6899999999999987654321 13688888842 3599988643 344
Q ss_pred HHHHHHHH
Q psy5987 171 EAIDAIVS 178 (197)
Q Consensus 171 ~~i~~l~~ 178 (197)
+.+.++..
T Consensus 90 ~~l~~~~~ 97 (272)
T PRK02231 90 EQLEACLE 97 (272)
T ss_pred HHHHHHHh
Confidence 44544433
No 58
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=87.80 E-value=6 Score=35.19 Aligned_cols=101 Identities=9% Similarity=0.069 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCc-eecccCCCCccChhHHHHHHHHHHHhCCcE
Q psy5987 18 VRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGT-VIGSARCSDFREKAGRLKAAKNLIDRGITN 96 (197)
Q Consensus 18 i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs-~LgssR~~~~~~~~~~~~~~~~l~~~~I~~ 96 (197)
+..+-+.+...+.+++-+.++.. ... ..+.+......-|. ..--....+-.+.+..+++.+..++.+.|.
T Consensus 11 ~~~l~~~~~~~~~r~liv~d~~~--~~~-------~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~ 81 (345)
T cd08171 11 YKKIPEVCEKYGKKVVVIGGKTA--LAA-------AKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADM 81 (345)
T ss_pred HHHHHHHHHhcCCEEEEEeCHHH--HHH-------HHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCE
Confidence 45555555455678888866421 111 12333333332232 110111111124567889999999999999
Q ss_pred EEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 97 LVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 97 LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
+|-+||--.+..|..++-. .++++|.||-|-
T Consensus 82 iiavGGGs~~D~aK~ia~~----------------------~~~p~i~VPTt~ 112 (345)
T cd08171 82 IFAVGGGKAIDTVKVLADK----------------------LGKPVFTFPTIA 112 (345)
T ss_pred EEEeCCcHHHHHHHHHHHH----------------------cCCCEEEecCcc
Confidence 9999999999988877631 267899999875
No 59
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=87.78 E-value=13 Score=30.12 Aligned_cols=67 Identities=7% Similarity=0.075 Sum_probs=46.6
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
+||++..--+.|-.+.++.++.+.+...|+++.-+.. .. +++
T Consensus 1 ~igvi~~~~~~~~~~~~~~~i~~~a~~~g~~~~~~~~----------------------------------~~----~~~ 42 (267)
T cd06283 1 LIGVIVADITNPFSSLVLKGIEDVCRAHGYQVLVCNS----------------------------------DN----DPE 42 (267)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHHcCCEEEEEcC----------------------------------CC----CHH
Confidence 4677777677888888999999988888876642210 00 123
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
......+.+...++|++++.+.+..
T Consensus 43 ~~~~~~~~l~~~~~dgiii~~~~~~ 67 (267)
T cd06283 43 KEKEYLESLLAYQVDGLIVNPTGNN 67 (267)
T ss_pred HHHHHHHHHHHcCcCEEEEeCCCCC
Confidence 3445667788889999999887654
No 60
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=87.72 E-value=3.2 Score=37.25 Aligned_cols=54 Identities=13% Similarity=0.077 Sum_probs=43.3
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDF 153 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi 153 (197)
+.+..+++++.+++++.|.+|-+||--.+..|..++-. .++++|.||-|--.|-
T Consensus 69 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~----------------------~~~p~i~IPTtagtgS 122 (366)
T PRK09423 69 SDNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY----------------------LGVPVVIVPTIASTDA 122 (366)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH----------------------cCCCEEEeCCccccCc
Confidence 34678899999999999999999999999888777521 2689999998854443
No 61
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=87.59 E-value=1.4 Score=38.65 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=37.8
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhH--HHHHH
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSA--LHRII 170 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA--~~~~~ 170 (197)
+.|.+|++|||||+..|..... ..+++++||.. -++||.|. .+.+-
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~----------------------~~~~pilGIn~----------G~lGFL~~~~~~~~~ 110 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA----------------------PYGVPLIGINH----------GRLGFITDIPLDDMQ 110 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc----------------------CCCCCEEEEcC----------CCccccccCCHHHHH
Confidence 6799999999999987643311 24778888851 26899986 35566
Q ss_pred HHHHHHHH
Q psy5987 171 EAIDAIVS 178 (197)
Q Consensus 171 ~~i~~l~~ 178 (197)
+.++++..
T Consensus 111 ~~l~~~~~ 118 (291)
T PRK02155 111 ETLPPMLA 118 (291)
T ss_pred HHHHHHHc
Confidence 66766643
No 62
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=87.54 E-value=1.6 Score=38.91 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=44.3
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDND 152 (197)
+.+..+++.+.+++.+.|.+|-+||--.+..|..++-. .+++++.||-|.-.+
T Consensus 61 ~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~----------------------~~~p~i~VPTT~gtg 113 (347)
T cd08172 61 SEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADR----------------------LGVPVITVPTLAATC 113 (347)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHH----------------------hCCCEEEecCccccC
Confidence 56789999999999999999999999999998877632 267999999886443
No 63
>PRK11914 diacylglycerol kinase; Reviewed
Probab=87.51 E-value=1.4 Score=38.26 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCC
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDM 158 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~ 158 (197)
+.+..++++...+.+.|.+|++|||||+..+.. .|. ..++++-.||.==-||+. .
T Consensus 50 ~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~----------~l~------------~~~~~lgiiP~GT~NdfA---r 104 (306)
T PRK11914 50 AHDARHLVAAALAKGTDALVVVGGDGVISNALQ----------VLA------------GTDIPLGIIPAGTGNDHA---R 104 (306)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchHHHHHhH----------Hhc------------cCCCcEEEEeCCCcchhH---H
Confidence 345667777777788899999999999986531 111 135677789988889998 4
Q ss_pred CCCchh
Q psy5987 159 TIGTDS 164 (197)
Q Consensus 159 s~GfdT 164 (197)
++|..+
T Consensus 105 ~lg~~~ 110 (306)
T PRK11914 105 EFGIPT 110 (306)
T ss_pred HcCCCC
Confidence 667654
No 64
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=87.38 E-value=0.9 Score=40.46 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=42.7
Q ss_pred cChhHHHHHHHHHHHhCC---cEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 77 REKAGRLKAAKNLIDRGI---TNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 77 ~~~~~~~~~~~~l~~~~I---~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
.+.+..+++.+.+++.++ |.+|-+||--.+..|..++-.+ ..++++|.||-|.
T Consensus 66 ~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~--------------------~rgip~i~VPTT~ 121 (345)
T cd08195 66 KSLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATY--------------------MRGIDFIQIPTTL 121 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHH--------------------hcCCCeEEcchhH
Confidence 356788999999999998 9999999998888887665211 1378999999997
No 65
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.29 E-value=1.1 Score=39.61 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=38.2
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHHHHH---
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRI--- 169 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~~~~--- 169 (197)
+.|.++++|||||+..+.... ...++++++|.. .-++||.|.....
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~----------------------~~~~~pv~gin~---------~G~lGFL~~~~~~~~~ 105 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHL----------------------APHDIPILSVNV---------GGHLGFLTHPRDLLQD 105 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHh----------------------ccCCCCEEEEec---------CCcceEecCchhhcch
Confidence 689999999999997764331 124778888865 2379999975422
Q ss_pred HHHHHHHHHh
Q psy5987 170 IEAIDAIVST 179 (197)
Q Consensus 170 ~~~i~~l~~~ 179 (197)
-+.++++...
T Consensus 106 ~~~l~~i~~g 115 (305)
T PRK02645 106 ESVWDRLQED 115 (305)
T ss_pred HHHHHHHHcC
Confidence 4666666543
No 66
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=87.12 E-value=1.2 Score=39.76 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=45.9
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhc-CCCcHHHH----hhcCCceEEEeeeecccC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKD-GSITKDQR----EKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~-~~~~~~~~----~~~~~i~vvgiPkTIDND 152 (197)
+.+..+++.+.+++++.|.+|-|||--+|..|..++-. ... +.+.++.. .....+++|.||-|--+-
T Consensus 63 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~--------~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtG 134 (366)
T PF00465_consen 63 TLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALL--------LANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTG 134 (366)
T ss_dssp BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHH--------HTSSSCGGGGGCECSCCSS--SEEEEEESSSSSS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhh--------ccCCCcHHHHHhhccccccCCCcEEEeeCCcccc
Confidence 45788999999999999999999999999999888732 111 01111100 011238999999886653
No 67
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=86.76 E-value=1.6 Score=38.03 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=39.6
Q ss_pred hCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHHHHHHH
Q psy5987 92 RGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIE 171 (197)
Q Consensus 92 ~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~~~~~~ 171 (197)
...+.++++|||||+..+..... ..+++|+||= --++||.|-.+ -+
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~----------------------~~~~pilgin----------~G~lGFLt~~~--~~ 99 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA----------------------RLDIPVLGIN----------LGHLGFLTDFE--PD 99 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc----------------------cCCCCEEEEe----------CCCcccccccC--HH
Confidence 57899999999999988765532 1357888872 22799999887 45
Q ss_pred HHHHHHHhhcc
Q psy5987 172 AIDAIVSTAYS 182 (197)
Q Consensus 172 ~i~~l~~~a~S 182 (197)
.++.+......
T Consensus 100 ~~~~~~~~~~~ 110 (281)
T COG0061 100 ELEKALDALLE 110 (281)
T ss_pred HHHHHHHHHhc
Confidence 55555444433
No 68
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=86.73 E-value=2.1 Score=38.31 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=44.2
Q ss_pred cChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCC
Q psy5987 77 REKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDF 153 (197)
Q Consensus 77 ~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi 153 (197)
.+.+..+++.+.+++.+.|.+|-+||--.+..|..++. ..++++|.||-|.-.|-
T Consensus 71 ~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA~----------------------~rgip~I~IPTT~~tds 125 (350)
T PRK00843 71 ATMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAAY----------------------RLGIPFISVPTAASHDG 125 (350)
T ss_pred CCHHHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHHH----------------------hcCCCEEEeCCCccCCc
Confidence 35678899999999999999999999888888766651 13789999999975543
No 69
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=86.68 E-value=1.6 Score=39.05 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHHHhCC---cEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 78 EKAGRLKAAKNLIDRGI---TNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I---~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
+.+..+++.+.+++.+. |.+|.+||--.+..|..++-. ...+++++.||-|.
T Consensus 74 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~--------------------~~~gip~i~IPTT~ 128 (358)
T PRK00002 74 SLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAAT--------------------YMRGIRFIQVPTTL 128 (358)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHH--------------------hcCCCCEEEcCchh
Confidence 45788999999999987 999999999888888766521 01368999999996
No 70
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=86.52 E-value=1.8 Score=38.36 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=42.7
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeeccc
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDN 151 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDN 151 (197)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-. .++++|.||-|..+
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~----------------------~~~p~i~IPTtatg 113 (337)
T cd08177 62 PVEVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALR----------------------TGLPIIAIPTTLSG 113 (337)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHH----------------------hcCCEEEEcCCchh
Confidence 35678999999999999999999999999988777521 26899999988643
No 71
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.51 E-value=2 Score=37.49 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=36.4
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHH--HHHH
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSAL--HRII 170 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~--~~~~ 170 (197)
+.|.+|++|||||+-.|... ...+|+||-. -++||.|.+ +.+-
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~-------------------------~~~PilGIN~----------G~lGFL~~~~~~~~~ 96 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQR-------------------------AKGPILGINM----------GGLGFLTEIEIDEVG 96 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHH-------------------------cCCCEEEEEC----------CCCccCcccCHHHHH
Confidence 78999999999999765321 1347888743 368998863 4555
Q ss_pred HHHHHHHHhh
Q psy5987 171 EAIDAIVSTA 180 (197)
Q Consensus 171 ~~i~~l~~~a 180 (197)
+.++++...-
T Consensus 97 ~~l~~i~~g~ 106 (271)
T PRK01185 97 SAIKKLIRGE 106 (271)
T ss_pred HHHHHHHcCC
Confidence 6666665543
No 72
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=86.49 E-value=1.9 Score=37.84 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=44.6
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDND 152 (197)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.+ ..+++++.||-|.-.+
T Consensus 63 ~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~--------------------~~~~p~i~iPTt~~tg 117 (332)
T cd07766 63 TFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALL--------------------NRGLPIIIVPTTAATG 117 (332)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHh--------------------cCCCCEEEEeCCCchh
Confidence 457789999999999999999999999998887776321 1278999999887655
No 73
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=86.38 E-value=1.6 Score=39.35 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=49.5
Q ss_pred cChhHHHHHHHHHHHhCC----cEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccC
Q psy5987 77 REKAGRLKAAKNLIDRGI----TNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 77 ~~~~~~~~~~~~l~~~~I----~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDND 152 (197)
++.+..+++.+.+.+.+. |.+|-+||--.+..|..++-.+ ..+++.|.||.|.
T Consensus 68 ~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~--------------------~rg~p~i~VPTT~--- 124 (354)
T cd08199 68 KTMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLY--------------------RRGTPYVRIPTTL--- 124 (354)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh--------------------cCCCCEEEEcCcc---
Confidence 356788999999999999 9999999988888877665211 1378999999996
Q ss_pred CCCCCCCCCchhHHH
Q psy5987 153 FCGTDMTIGTDSALH 167 (197)
Q Consensus 153 i~g~d~s~GfdTA~~ 167 (197)
+..+|.+.|.-++++
T Consensus 125 lA~vD~~~g~K~~i~ 139 (354)
T cd08199 125 VGLIDAGVGIKTGVN 139 (354)
T ss_pred ceeeecCCCCceEEe
Confidence 333455555555543
No 74
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=86.20 E-value=2.6 Score=37.44 Aligned_cols=52 Identities=10% Similarity=0.215 Sum_probs=41.9
Q ss_pred ChhHHHHHHHHHHHhCC---cEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 78 EKAGRLKAAKNLIDRGI---TNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I---~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
+.+..+++.+.+++++. |.+|.+||--.+..|..++-.+ ..+++++.||-|.
T Consensus 63 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~--------------------~~~~p~i~VPTT~ 117 (344)
T TIGR01357 63 SLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATY--------------------MRGIRFIQVPTTL 117 (344)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHH--------------------ccCCCEEEecCch
Confidence 45778999999999988 8999999998888887665210 1368999999986
No 75
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=85.72 E-value=2.6 Score=37.31 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=43.2
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecc
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSID 150 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTID 150 (197)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-. .. .......+++|.||-|--
T Consensus 63 ~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~--------~~-------~~~~~~~~p~i~VPTtag 120 (332)
T cd08180 63 PIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYF--------AK-------KLGKKKKPLFIAIPTTSG 120 (332)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHH--------Hh-------CCCCCCCCCEEEeCCCCc
Confidence 45678899999999999999999999999988766521 00 000123689999998863
No 76
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=85.71 E-value=2.2 Score=38.48 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHHHHhCCc---EEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCC
Q psy5987 78 EKAGRLKAAKNLIDRGIT---NLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFC 154 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~---~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~ 154 (197)
+.+..+++.+.+.+.++| .+|-+||--.+..|..++-.+ ..+++++.||-|. +.
T Consensus 66 ~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~--------------------~rgip~I~IPTTl---la 122 (355)
T cd08197 66 TLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALL--------------------FRGIRLVHIPTTL---LA 122 (355)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh--------------------ccCCCEEEecCcc---cc
Confidence 457789999999999998 999999988887776554211 1368999999985 34
Q ss_pred CCCCCCCchhH
Q psy5987 155 GTDMTIGTDSA 165 (197)
Q Consensus 155 g~d~s~GfdTA 165 (197)
.+|.++|--++
T Consensus 123 ~~da~i~~k~~ 133 (355)
T cd08197 123 QSDSVLSLKQA 133 (355)
T ss_pred cccccccCcee
Confidence 45555554443
No 77
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=85.66 E-value=1.9 Score=38.65 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=45.7
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHH---HhhcCCceEEEeeeecccC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQ---REKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~---~~~~~~i~vvgiPkTIDND 152 (197)
+.+...++++.+++.+.|.+|-|||--.+..|..++-. + -..+....+. ......+++|.||-|.-.+
T Consensus 65 ~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~----~---~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtg 135 (370)
T cd08551 65 TLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALL----A---TNPGDIWDYEGGKPVIKPALPLIAIPTTAGTG 135 (370)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH----H---hCCCcHHHHhCcccccCCCCCEEEecCCCcch
Confidence 46788999999999999999999999999988777631 1 0000000000 0112368999999887433
No 78
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=84.68 E-value=3.5 Score=37.44 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=32.3
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+..+++++.+++++.|.+|-|||--++..|..++
T Consensus 63 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 63 SLETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 456789999999999999999999999999988776
No 79
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=84.49 E-value=20 Score=29.05 Aligned_cols=66 Identities=8% Similarity=0.138 Sum_probs=45.8
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
|||+...-..|-.+..+.++-+.+...|+++.-+ .+.. +++.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~----------------------------------~~~~----~~~~ 43 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYENGYQMLLM----------------------------------NTNF----SIEK 43 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHCCCEEEEE----------------------------------eCCC----CHHH
Confidence 6888877778888888888888887778766422 0110 1233
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..+..+.|...++|++|+.+.+.+
T Consensus 44 ~~~~i~~l~~~~~dgii~~~~~~~ 67 (259)
T cd01542 44 EIEALELLARQKVDGIILLATTIT 67 (259)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC
Confidence 445667788899999999976644
No 80
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=84.46 E-value=25 Score=30.05 Aligned_cols=122 Identities=11% Similarity=0.141 Sum_probs=71.2
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
+||++..--.-|=.-.+++++-+.+..+|+.++-+ ++... +
T Consensus 3 ~IGvivp~~~npff~~ii~gIe~~a~~~Gy~l~l~----------------------------------~t~~~-----~ 43 (279)
T PF00532_consen 3 TIGVIVPDISNPFFAEIIRGIEQEAREHGYQLLLC----------------------------------NTGDD-----E 43 (279)
T ss_dssp EEEEEESSSTSHHHHHHHHHHHHHHHHTTCEEEEE----------------------------------EETTT-----H
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHHcCCEEEEe----------------------------------cCCCc-----h
Confidence 36777777777777778888888888888766522 11111 2
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTI 160 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~ 160 (197)
+.++.++.|.++++|++|+.+-......-..+. + .++++|.+=...+++. .. .++
T Consensus 44 ~~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~---------------------~--~~iPvV~~~~~~~~~~-~~-~~V 98 (279)
T PF00532_consen 44 EKEEYIELLLQRRVDGIILASSENDDEELRRLI---------------------K--SGIPVVLIDRYIDNPE-GV-PSV 98 (279)
T ss_dssp HHHHHHHHHHHTTSSEEEEESSSCTCHHHHHHH---------------------H--TTSEEEEESS-SCTTC-TS-CEE
T ss_pred HHHHHHHHHHhcCCCEEEEecccCChHHHHHHH---------------------H--cCCCEEEEEeccCCcc-cC-CEE
Confidence 233888999999999999996655522222221 1 2788988766666651 11 234
Q ss_pred CchhHHHHHHHHHHHHHHhhccCCc-EEEE
Q psy5987 161 GTDSALHRIIEAIDAIVSTAYSHQR-TFIM 189 (197)
Q Consensus 161 GfdTA~~~~~~~i~~l~~~a~S~~r-v~iv 189 (197)
..| -.+...++.+.|... .|++ +.++
T Consensus 99 ~~D-~~~a~~~a~~~Li~~--Gh~~~I~~i 125 (279)
T PF00532_consen 99 YID-NYEAGYEATEYLIKK--GHRRPIAFI 125 (279)
T ss_dssp EEE-HHHHHHHHHHHHHHT--TCCSTEEEE
T ss_pred EEc-chHHHHHHHHHHHhc--ccCCeEEEE
Confidence 444 222223444444433 3677 6554
No 81
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=84.27 E-value=26 Score=30.09 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
++...+..+.+...++|++++.+.+.+.
T Consensus 101 ~~~~~~~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 101 LEKQRAYLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCH
Confidence 3445667778889999999999875443
No 82
>PLN02727 NAD kinase
Probab=83.97 E-value=1.6 Score=44.18 Aligned_cols=55 Identities=11% Similarity=0.190 Sum_probs=39.7
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHH--HHHH
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSAL--HRII 170 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~--~~~~ 170 (197)
++|.+|+||||||+-.|..+.. ...++|+||-.= ++||.|-. +.+.
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~----------------------~~~iPILGINlG----------rLGFLTdi~~ee~~ 790 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR----------------------GAVPPVVSFNLG----------SLGFLTSHYFEDFR 790 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc----------------------CCCCCEEEEeCC----------CccccccCCHHHHH
Confidence 6899999999999987765432 136788888432 79999864 4566
Q ss_pred HHHHHHHHh
Q psy5987 171 EAIDAIVST 179 (197)
Q Consensus 171 ~~i~~l~~~ 179 (197)
+.++++...
T Consensus 791 ~~L~~Il~G 799 (986)
T PLN02727 791 QDLRQVIHG 799 (986)
T ss_pred HHHHHHHcC
Confidence 777776543
No 83
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=83.53 E-value=4 Score=36.73 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=32.1
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+..+++++.+++.+.|.+|-|||--++..|..++
T Consensus 68 ~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia 103 (374)
T cd08189 68 TIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIA 103 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 456789999999999999999999999999987775
No 84
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=83.41 E-value=2.5 Score=38.43 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=49.8
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTD 157 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d 157 (197)
+.++.+++.+.+.+.+.|.++=|||--++..|..++.. .++++|.||.+-.+|=+.+.
T Consensus 69 ~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~----------------------~~~pfIsvPT~AS~Da~~Sp 126 (360)
T COG0371 69 SEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYR----------------------LGLPFISVPTIASTDAITSP 126 (360)
T ss_pred CHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH----------------------cCCCEEEecCccccccccCC
Confidence 45778889888888899999999999999999988753 38999999999999977654
No 85
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=83.36 E-value=11 Score=28.50 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=44.1
Q ss_pred cCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCcc-ChhHHHHHHHHHHHhCCcEEEEecC
Q psy5987 28 LGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFR-EKAGRLKAAKNLIDRGITNLVVIGG 102 (197)
Q Consensus 28 ~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~-~~~~~~~~~~~l~~~~I~~LiviGG 102 (197)
++.++++-.+|..--++ .+..+...+...|.. ||-++=|+-..... +++.+.+.++.|.+.++-+|.+--|
T Consensus 10 ~~~~lvaG~~gL~r~V~---~v~v~e~~d~~~~l~-~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~ 81 (123)
T PF07905_consen 10 KDAKLVAGENGLDRPVR---WVHVMEAPDPSDWLR-GGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTG 81 (123)
T ss_pred CCCEEecCCccCCCcEE---EEEEeecCCHHHhCC-CCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEecc
Confidence 34567665555544443 244444457788854 44444444333222 3556899999999999999999555
No 86
>PRK13054 lipid kinase; Reviewed
Probab=83.33 E-value=3.3 Score=35.99 Aligned_cols=29 Identities=17% Similarity=0.461 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a 109 (197)
+..++++...+.+.|.+|++|||||+..+
T Consensus 44 ~a~~~a~~~~~~~~d~vvv~GGDGTl~ev 72 (300)
T PRK13054 44 DAARYVEEALALGVATVIAGGGDGTINEV 72 (300)
T ss_pred cHHHHHHHHHHcCCCEEEEECCccHHHHH
Confidence 34555666666789999999999999875
No 87
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=83.09 E-value=14 Score=33.16 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=32.1
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+..+++++.+++.+.|.+|-|||--.+..|..++
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia 103 (380)
T cd08185 68 TTTTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIA 103 (380)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHH
Confidence 457788999999999999999999999999988776
No 88
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=82.80 E-value=28 Score=29.50 Aligned_cols=26 Identities=8% Similarity=0.236 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
+...+..+.|...++|++|+.+.+.+
T Consensus 99 ~~~~~~~~~l~~~~vdGiI~~~~~~~ 124 (327)
T PRK10423 99 QRMNRNLETLMQKRVDGLLLLCTETH 124 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 34456777888899999999987644
No 89
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=82.71 E-value=7.5 Score=32.09 Aligned_cols=103 Identities=16% Similarity=0.111 Sum_probs=66.8
Q ss_pred EEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCC-------CCeEECChhhhhhhhhhcCceecccCCCC
Q psy5987 3 AQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGG-------DNIVEANWSSVSSIIHKGGTVIGSARCSD 75 (197)
Q Consensus 3 aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~-------~~~~~l~~~~v~~~~~~gGs~LgssR~~~ 75 (197)
+++.+||+.|-.... +....+...++++=.|..=|.+.. .++--++++....+... |..+ -+.++
T Consensus 1 ~~Ii~~g~~~~~~~~-----~~~~~~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~-~~~~--~~~p~ 72 (208)
T cd07995 1 ALILLGGPLPDSPLL-----LKLWKKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSK-GVEI--IHFPD 72 (208)
T ss_pred CEEEECCcCCcchhH-----HHhhccCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhc-CCeE--EECCC
Confidence 367888888854433 333344567899999988887742 14444555555555444 4422 23333
Q ss_pred ccChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHH
Q psy5987 76 FREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQ 114 (197)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~ 114 (197)
.++.-+.+++.+.+.+++-+-++++|+.|. +.=|.|+.
T Consensus 73 ~KD~TD~e~Al~~~~~~~~~~i~i~Ga~Gg-R~DH~lan 110 (208)
T cd07995 73 EKDFTDFEKALKLALERGADEIVILGATGG-RLDHTLAN 110 (208)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEEccCCC-cHHHHHHH
Confidence 345568999999999999999999999998 33344443
No 90
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=82.64 E-value=2.6 Score=37.86 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=50.6
Q ss_pred ccChhHHHHHHHHHHHhCC---cEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccC
Q psy5987 76 FREKAGRLKAAKNLIDRGI---TNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~I---~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDND 152 (197)
.++.+..+++.+.+.+.+. |.+|.+||--++..|..++-.| . .+++.+.||.|.-
T Consensus 56 ~k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~------------------~--rgi~~i~iPTTll-- 113 (346)
T cd08196 56 NKSLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASIY------------------M--RGVSWSFVPTTLL-- 113 (346)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHH------------------H--cCCCeEEecccHH--
Confidence 3356788999999999999 8999999998888887665211 1 2679999999852
Q ss_pred CCCCCCCCCchhHHHH
Q psy5987 153 FCGTDMTIGTDSALHR 168 (197)
Q Consensus 153 i~g~d~s~GfdTA~~~ 168 (197)
..+|.++|.-|++|.
T Consensus 114 -a~vds~ig~k~~vn~ 128 (346)
T cd08196 114 -AQVDSCIGSKSSINV 128 (346)
T ss_pred -HhhhccccccceecC
Confidence 234555666555553
No 91
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=82.57 E-value=1.5 Score=41.22 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=74.6
Q ss_pred CCEEEEEcCcchhhccCCCCeEECChhhhhhhhhh--cCceecccCCCCccChhHHHHHHHHHHHhCC---cEEEEecCC
Q psy5987 29 GCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK--GGTVIGSARCSDFREKAGRLKAAKNLIDRGI---TNLVVIGGD 103 (197)
Q Consensus 29 g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~--gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I---~~LiviGG~ 103 (197)
.+.|+-..++.... .+ ...-++.+.|..+... .-..+--.-.+..++.+..+++.+.|.++++ |.++.+||-
T Consensus 171 ~~~v~~~~~~~~~~-~~--~~~ii~d~~v~~ly~~~l~~~~~~~~~ge~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG 247 (488)
T PRK13951 171 PHLVKIILGGFKRV-RN--EELVFTTERVEKIYGRYLPENRLLFPDGEEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGG 247 (488)
T ss_pred ceeEEEeccccccC-CC--eEEEEECCcHHHHHHHhhcccEEEecCCCCCCCHHHHHHHHHHHHHcCCCCCCeEEEECCh
Confidence 34666555555554 23 5566777777654222 1122211222333456778999999999999 999999998
Q ss_pred CcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHHHH
Q psy5987 104 GSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHR 168 (197)
Q Consensus 104 gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~~~ 168 (197)
-....|.-++-.| .-+++.+.||.|+ +.-+|.|+|-=|++|.
T Consensus 248 ~v~D~agf~A~~y--------------------~RGi~~i~vPTTl---la~vDssiggK~~vn~ 289 (488)
T PRK13951 248 ALTDFTGFVASTF--------------------KRGVGLSFYPTTL---LAQVDASVGGKNAIDF 289 (488)
T ss_pred HHHHHHHHHHHHH--------------------hcCCCeEecCccH---HHHHhcCCCCCeeeeC
Confidence 8877776665422 1289999999996 3456778887777765
No 92
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=82.02 E-value=4 Score=36.74 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=31.9
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+...++++.+++++.|.+|-|||--.+..|..++
T Consensus 65 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia 100 (375)
T cd08194 65 TDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIA 100 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 456789999999999999999999999999887765
No 93
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=81.56 E-value=9.4 Score=35.90 Aligned_cols=101 Identities=12% Similarity=0.205 Sum_probs=59.5
Q ss_pred CEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCce---ecccCCCCccChhHHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 30 CKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTV---IGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 30 ~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~---LgssR~~~~~~~~~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
.+++.|.|=..| ++ +-..+-++.+..+....|.. .-|.+ +.+..++++.+...+.|.+|++|||||+
T Consensus 112 kr~lvIvNP~SG--kg--~a~k~~~~~v~~~L~~~gi~~~v~~T~~------~ghA~~la~~~~~~~~D~VV~vGGDGTl 181 (481)
T PLN02958 112 KRLLVFVNPFGG--KK--SASKIFFDVVKPLLEDADIQLTIQETKY------QLHAKEVVRTMDLSKYDGIVCVSGDGIL 181 (481)
T ss_pred cEEEEEEcCCCC--Cc--chhHHHHHHHHHHHHHcCCeEEEEeccC------ccHHHHHHHHhhhcCCCEEEEEcCCCHH
Confidence 378888887777 33 22222233566555555542 22322 2345566666666788999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCC
Q psy5987 107 TGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCG 155 (197)
Q Consensus 107 ~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g 155 (197)
..+- +-|+. ....+....+++-.||.=--||+.-
T Consensus 182 nEVv----------NGL~~-----~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 182 VEVV----------NGLLE-----REDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred HHHH----------HHHhh-----CccccccccCceEEecCcCcchhhh
Confidence 7542 22221 0111113357777899888888863
No 94
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=81.45 E-value=5.8 Score=35.69 Aligned_cols=66 Identities=15% Similarity=0.037 Sum_probs=44.4
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhH--HHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWP--ELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~--~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
+.+...++++.+++.++|.+|-|||--.+..|..++-... .-+.++...+ +.....+++|.||-|-
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~------~~~~~~~p~i~IPTTa 135 (376)
T cd08193 68 PEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVD------LVAGPRLPLILVPTTA 135 (376)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCC------ccCCCCCCEEEeCCCC
Confidence 5678899999999999999999999999998877763110 0001111000 0112368999999884
No 95
>PLN02834 3-dehydroquinate synthase
Probab=81.20 E-value=4.5 Score=37.53 Aligned_cols=52 Identities=8% Similarity=0.159 Sum_probs=40.9
Q ss_pred ChhHHHHHHHHHHHhCCc---EEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 78 EKAGRLKAAKNLIDRGIT---NLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~---~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
+.+...++++.+.++++| .+|.+||--.+..|..++-.+ ..++++|.||-|.
T Consensus 145 sl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y--------------------~rgiplI~VPTTl 199 (433)
T PLN02834 145 DMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASY--------------------QRGVNFVQIPTTV 199 (433)
T ss_pred CHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHh--------------------cCCCCEEEECCcC
Confidence 457788899999999998 999999998888876554210 1378999999984
No 96
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=80.84 E-value=28 Score=28.16 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=43.6
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
+||++...-..|-...++.++.+.+...|+++.-+. . .. +.
T Consensus 1 ~I~~i~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~--------~--------------------------~~----~~- 41 (266)
T cd06278 1 LIGVVVADLDNPFYSELLEALSRALQARGYQPLLIN--------T--------------------------DD----DE- 41 (266)
T ss_pred CEEEEeCCCCCchHHHHHHHHHHHHHHCCCeEEEEc--------C--------------------------CC----CH-
Confidence 467777766677788888888888878887664220 0 00 01
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
+..+..+++...++|++++...+.+
T Consensus 42 ~~~~~i~~~~~~~vdgiii~~~~~~ 66 (266)
T cd06278 42 DLDAALRQLLQYRVDGVIVTSGTLS 66 (266)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCC
Confidence 2334566777889999999876544
No 97
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=80.74 E-value=4.2 Score=36.41 Aligned_cols=65 Identities=11% Similarity=0.055 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHH--HHhhcCCceEEEeeeec
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD--QREKYCHLHIAGLVGSI 149 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~--~~~~~~~i~vvgiPkTI 149 (197)
+.+..+++++.+++.+.|.+|-+||--++..|..++-. + -..+++.+. .+.....+++|.||-|-
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~----~---~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 68 SLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVL----I---KNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH----H---hCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 45778999999999999999999999999998876521 0 000111110 01112368999999885
No 98
>PRK10586 putative oxidoreductase; Provisional
Probab=80.60 E-value=3.5 Score=37.25 Aligned_cols=61 Identities=11% Similarity=0.045 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCC
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDM 158 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~ 158 (197)
.++.+++.+..+ .+.|.+|-+||--++..|..++.. .+++++.||-|-.+|-+.+..
T Consensus 73 ~~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~----------------------~~~p~i~vPT~a~t~s~~s~~ 129 (362)
T PRK10586 73 ESDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARR----------------------LGLPFVAIPTIAATCAAWTPL 129 (362)
T ss_pred HHHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh----------------------cCCCEEEEeCCccccccccCc
Confidence 456667766654 588999999999999999877631 367999999998887665544
Q ss_pred CCCc
Q psy5987 159 TIGT 162 (197)
Q Consensus 159 s~Gf 162 (197)
++-+
T Consensus 130 avi~ 133 (362)
T PRK10586 130 SVWY 133 (362)
T ss_pred eEEE
Confidence 4433
No 99
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=80.40 E-value=41 Score=29.71 Aligned_cols=24 Identities=17% Similarity=0.490 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
+...++++.|...++|++++..-+
T Consensus 67 ~~q~~~i~~li~~~vdgIiv~~~d 90 (336)
T PRK15408 67 SGQVQLINNFVNQGYNAIIVSAVS 90 (336)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCC
Confidence 344577888999999999998654
No 100
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=80.06 E-value=3.9 Score=37.30 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=32.2
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+...++++.+++.+.|.+|-|||--++..|..++
T Consensus 91 ~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia 126 (395)
T PRK15454 91 CITDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVA 126 (395)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHH
Confidence 346788999999999999999999999999998775
No 101
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=79.96 E-value=6.6 Score=35.45 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=31.7
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+..+++++.+++++.|.+|-|||--.+..|..++
T Consensus 71 ~~~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia 106 (379)
T TIGR02638 71 TITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIG 106 (379)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHH
Confidence 457788999999999999999999998998887665
No 102
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=79.94 E-value=31 Score=27.99 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=47.8
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
+||++...-..|.....+.++-+.+...|++++-+... . +++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~------~--------------------------------~~~ 42 (268)
T cd01575 1 LVAVLVPSLSNSVFADVLQGISDVLEAAGYQLLLGNTG------Y--------------------------------SPE 42 (268)
T ss_pred CEEEEeCCCcchhHHHHHHHHHHHHHHcCCEEEEecCC------C--------------------------------Cch
Confidence 47888888888999999999988888888877543210 0 112
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
...++.+.+...++|++++.+-+.+
T Consensus 43 ~~~~~~~~l~~~~vdgiii~~~~~~ 67 (268)
T cd01575 43 REEELLRTLLSRRPAGLILTGLEHT 67 (268)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 3345667777888999999886654
No 103
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=79.91 E-value=37 Score=28.99 Aligned_cols=23 Identities=9% Similarity=0.185 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
......+.+...++|++|+.+-+
T Consensus 107 ~~~~~~~~~~~~~vdgiI~~~~~ 129 (331)
T PRK14987 107 MEQERLESMLSWNIDGLILTERT 129 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCC
Confidence 33456777888999999998643
No 104
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=79.73 E-value=6.1 Score=35.57 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+..+++++.+++.+.|.+|-+||--++..|..++
T Consensus 66 ~~~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia 101 (375)
T cd08179 66 SVETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMW 101 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 457789999999999999999999999999998876
No 105
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=79.71 E-value=4.5 Score=35.95 Aligned_cols=49 Identities=6% Similarity=0.026 Sum_probs=40.1
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
+.+...++++.+++ +.|.+|-|||--.+..|..++.. .+++++.||-|-
T Consensus 66 t~~~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~----------------------~~~p~i~IPTTa 114 (348)
T cd08175 66 DEKAVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK----------------------TGIPYISVPTAP 114 (348)
T ss_pred CHHHHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh----------------------cCCCEEEecCcc
Confidence 55678888888888 99999999999889888777521 368999999984
No 106
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=79.43 E-value=7.4 Score=35.66 Aligned_cols=66 Identities=11% Similarity=0.035 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHH--HHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPE--LLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~--~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
+.+..++.++.+++.+.|.+|-+||--+|..|..++=.+.. .+.++.+-++ .+.+..++|.||-|-
T Consensus 71 ~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~------~~~~~~plIaIPTTa 138 (377)
T COG1454 71 TIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGK------VKKPKAPLIAIPTTA 138 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHhhCCchhhhhccccc------ccCCCCCEEEecCCC
Confidence 45678999999999999999999999999988877522110 0111111010 033458999999875
No 107
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=79.36 E-value=6.7 Score=35.57 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHH---HhhcCCceEEEeeeec
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQ---REKYCHLHIAGLVGSI 149 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~---~~~~~~i~vvgiPkTI 149 (197)
+.+..+++++.+++.+.|.+|-|||--++..|..++-- + -..+++.++. ......++++.||-|-
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~----~---~~~~~~~~~~~~~~~~~~~~p~iaIPTTa 140 (383)
T PRK09860 73 TTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALV----A---ANGGDIRDYEGVDRSAKPQLPMIAINTTA 140 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHH----H---HCCCCHHHHhCcCccCCCCCCEEEEeCCC
Confidence 45778999999999999999999999999999887621 0 0001111111 0112467999999776
No 108
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=79.19 E-value=43 Score=29.23 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCC
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
++...+..+.+...++|++|+.+.+
T Consensus 67 ~~~~~~~i~~l~~~~vDGiIi~~~~ 91 (330)
T PRK10355 67 EETQMSQIENMINRGVDVLVIIPYN 91 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3445567888888999999998754
No 109
>KOG4180|consensus
Probab=79.12 E-value=1.8 Score=39.02 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=41.0
Q ss_pred eEECChhhhhhhhhhcCceecccCCCCccChhHHHHHHHHHHHhCC-----------------cEEEEecCCCcHHHHH
Q psy5987 49 IVEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGI-----------------TNLVVIGGDGSLTGAN 110 (197)
Q Consensus 49 ~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I-----------------~~LiviGG~gs~~~a~ 110 (197)
+..|+++++..+...-||..|.--.+........+.+++.|.+-+| |.+|-.|||||+-.|.
T Consensus 44 ~~~lspdql~q~L~srgtdv~~ll~~hKvhkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL~Aa 122 (395)
T KOG4180|consen 44 ISGLSPDQLLQYLESRGTDVGRLLSKHKVHKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFLLAA 122 (395)
T ss_pred ccCCCHHHHHHHHHhcCchHHHHHHHhHHHHHHHHHHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccceeehh
Confidence 4678888888888888886653222211122334556666666554 7889999999997764
No 110
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=79.09 E-value=7.4 Score=35.15 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=32.8
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQ 114 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~ 114 (197)
+.+..+++++.+++++.|.+|-+||--.+..|..++-
T Consensus 69 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~ 105 (383)
T cd08186 69 TVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAI 105 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHH
Confidence 4577899999999999999999999999999887763
No 111
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.06 E-value=34 Score=28.04 Aligned_cols=66 Identities=8% Similarity=0.111 Sum_probs=48.7
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
.|||+...=..|-.+.++.++.+.+...|++++-.. +.. +++
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~~g~~~~~~~----------------------------------~~~----~~~ 42 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRAAGYSLLIAN----------------------------------SLN----DPE 42 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHHcCCEEEEEe----------------------------------CCC----ChH
Confidence 478888877789999999999999988888775320 000 123
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
...+..+.+.+.++|++++.+.+.
T Consensus 43 ~~~~~i~~l~~~~vdgii~~~~~~ 66 (269)
T cd06281 43 RELEILRSFEQRRMDGIIIAPGDE 66 (269)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCC
Confidence 445667778889999999988754
No 112
>PRK13055 putative lipid kinase; Reviewed
Probab=78.36 E-value=6.2 Score=34.99 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHH
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a 109 (197)
.+++++.....+.|.+|++|||||+..+
T Consensus 48 a~~~~~~~~~~~~d~vvv~GGDGTl~ev 75 (334)
T PRK13055 48 AKNEAKRAAEAGFDLIIAAGGDGTINEV 75 (334)
T ss_pred HHHHHHHHhhcCCCEEEEECCCCHHHHH
Confidence 4455555556788999999999999864
No 113
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=78.02 E-value=4.6 Score=36.40 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+..+++++.+++++.|.+|-|||--.+..|..++
T Consensus 70 ~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia 105 (377)
T cd08176 70 TITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIG 105 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHH
Confidence 456789999999999999999999999999888775
No 114
>PRK13337 putative lipid kinase; Reviewed
Probab=77.21 E-value=4.8 Score=35.03 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGAN 110 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~ 110 (197)
+.+++++.+.+.+.|.||++|||||+..+.
T Consensus 45 ~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv 74 (304)
T PRK13337 45 DATLAAERAVERKFDLVIAAGGDGTLNEVV 74 (304)
T ss_pred CHHHHHHHHHhcCCCEEEEEcCCCHHHHHH
Confidence 455556666667789999999999997754
No 115
>PRK15138 aldehyde reductase; Provisional
Probab=77.20 E-value=8.9 Score=34.85 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=32.4
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+..+++++.+++.+.|.+|-|||--++..|..++
T Consensus 70 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia 105 (387)
T PRK15138 70 TYETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIA 105 (387)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHH
Confidence 456789999999999999999999999999988876
No 116
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=76.90 E-value=38 Score=27.39 Aligned_cols=65 Identities=11% Similarity=0.156 Sum_probs=46.0
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
+|++...-..|-.+.++.++.+.+...|+++.-+.. .. +++.
T Consensus 2 igvv~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~----------------------------------~~----~~~~ 43 (266)
T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARAAGYSLLLATT----------------------------------DY----DAER 43 (266)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHHHCCCEEEEeeC----------------------------------CC----CHHH
Confidence 678887667788999999999998888887754311 00 1233
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~g 104 (197)
..++.+.+...++|++|+..++.
T Consensus 44 ~~~~~~~l~~~~vdgiii~~~~~ 66 (266)
T cd06282 44 EADAVETLLRQRVDGLILTVADA 66 (266)
T ss_pred HHHHHHHHHhcCCCEEEEecCCC
Confidence 44566777788999999877664
No 117
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=76.78 E-value=40 Score=27.64 Aligned_cols=66 Identities=21% Similarity=0.161 Sum_probs=42.7
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++-+.+...|+++.-.. ... ..+++.
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~----------------------------------~~~--~~~~~~ 45 (275)
T cd06320 2 YGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQA----------------------------------APS--EGDQQG 45 (275)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEc----------------------------------cCC--CCCHHH
Confidence 57777666677788888888888777776654220 000 012234
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~ 103 (197)
..++.+.+...++|++|+.+.+
T Consensus 46 ~~~~i~~l~~~~vdgiIi~~~~ 67 (275)
T cd06320 46 QLSIAENMINKGYKGLLFSPIS 67 (275)
T ss_pred HHHHHHHHHHhCCCEEEECCCC
Confidence 4567788888899999887654
No 118
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=76.74 E-value=8 Score=34.60 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=32.3
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQ 114 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~ 114 (197)
+.+..+++.+.+++.+.|.+|-+||--++..|..++-
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~ 98 (367)
T cd08182 62 DLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAA 98 (367)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHH
Confidence 3567889999999999999999999999999887763
No 119
>PRK13057 putative lipid kinase; Reviewed
Probab=76.46 E-value=8 Score=33.28 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=30.2
Q ss_pred hhhhhhhhhhcCceecccCCCCccChhHHHHHHHHHHHhCCcEEEEecCCCcHHHH
Q psy5987 54 WSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 54 ~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a 109 (197)
++.+..+....|..+-...++ .+.+.+++++. ...+.|.+|++|||||+..+
T Consensus 15 ~~~i~~~l~~~g~~~~~~~t~---~~~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v 66 (287)
T PRK13057 15 LAAARAALEAAGLELVEPPAE---DPDDLSEVIEA-YADGVDLVIVGGGDGTLNAA 66 (287)
T ss_pred HHHHHHHHHHcCCeEEEEecC---CHHHHHHHHHH-HHcCCCEEEEECchHHHHHH
Confidence 445555545555432221222 13344555554 34678999999999999775
No 120
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=76.46 E-value=11 Score=31.73 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=56.6
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhcc------CCCCeEECCh--hhhhhhhhhcCceecccCC
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVD------GGDNIVEANW--SSVSSIIHKGGTVIGSARC 73 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~------~~~~~~~l~~--~~v~~~~~~gGs~LgssR~ 73 (197)
|||+-.-|-+ =..+.+.|..+|++|.+|..--.=+.. -..++.+++. +++.+.- .++-+-+.
T Consensus 3 IaiIgAsG~~------Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~D----aVIsA~~~ 72 (211)
T COG2910 3 IAIIGASGKA------GSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHD----AVISAFGA 72 (211)
T ss_pred EEEEecCchh------HHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCc----eEEEeccC
Confidence 5666655543 356788889999999998654433221 1125555555 4444321 11211111
Q ss_pred CCccCh----hHHHHHHHHHHHhCCcEEEEecCCCcHHHH
Q psy5987 74 SDFREK----AGRLKAAKNLIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 74 ~~~~~~----~~~~~~~~~l~~~~I~~LiviGG~gs~~~a 109 (197)
....++ ...+.+.+.|+.-+..-|+++||-||+..+
T Consensus 73 ~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id 112 (211)
T COG2910 73 GASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEID 112 (211)
T ss_pred CCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEc
Confidence 101111 124456778888899999999999998653
No 121
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=76.38 E-value=8 Score=34.77 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=31.8
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+...++++.+++.+.|.+|-|||--.+..|..++
T Consensus 60 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia 95 (374)
T cd08183 60 SVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIA 95 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHH
Confidence 346788999999999999999999999999887775
No 122
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=75.69 E-value=8.4 Score=34.13 Aligned_cols=52 Identities=10% Similarity=-0.046 Sum_probs=41.7
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDND 152 (197)
+.+..+++++.+++ +.|.+|-+||--.+..|..++ + ..++++|.||-|.-+|
T Consensus 66 ~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~---------------------~~gip~I~VPTT~~~~ 117 (332)
T cd08549 66 DEYELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-F---------------------KVGKPFISVPTAPSMD 117 (332)
T ss_pred CHHHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-H---------------------HcCCCEEEeCCCcccC
Confidence 45678888889988 999999999998888887665 1 1378999999997554
No 123
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=75.03 E-value=48 Score=29.81 Aligned_cols=124 Identities=21% Similarity=0.266 Sum_probs=70.0
Q ss_pred EEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchh--hccCC----------------C-C-eEECChhhhh-hhhh
Q psy5987 4 QVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQG--MVDGG----------------D-N-IVEANWSSVS-SIIH 62 (197)
Q Consensus 4 Il~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~G--L~~~~----------------~-~-~~~l~~~~v~-~~~~ 62 (197)
+++.||.-+ |-++...-.|.+.|++.+.+.+++.- +.+++ . + .+...+++.. ....
T Consensus 67 lvT~GgiQS---Nh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~ 143 (323)
T COG2515 67 LVTYGGIQS---NHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRK 143 (323)
T ss_pred EEEecccch---hHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHh
Confidence 455555432 45678887888999999999999982 11110 0 1 1122233333 2355
Q ss_pred hcCc--ee--cccCCCCccC---hhHHHHHHHHHHH-hCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHH
Q psy5987 63 KGGT--VI--GSARCSDFRE---KAGRLKAAKNLID-RGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQR 134 (197)
Q Consensus 63 ~gGs--~L--gssR~~~~~~---~~~~~~~~~~l~~-~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~ 134 (197)
+|+. ++ |. ..+.-. -+-..++++++++ .++|.+|+.-|.++-.+...+. ..
T Consensus 144 ~g~kpyvIp~GG--~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g-------------------~~ 202 (323)
T COG2515 144 QGGKPYVIPEGG--SSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVG-------------------LA 202 (323)
T ss_pred cCCCCcEeccCC--cCccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHH-------------------hh
Confidence 5654 22 22 111111 1234677888887 8999999887766544332221 12
Q ss_pred hhcCCceEEEeeeeccc
Q psy5987 135 EKYCHLHIAGLVGSIDN 151 (197)
Q Consensus 135 ~~~~~i~vvgiPkTIDN 151 (197)
..+++.+||+||.+=|+
T Consensus 203 ~~~~~~~ViG~~v~~~~ 219 (323)
T COG2515 203 QLGPDVEVIGIDVSADP 219 (323)
T ss_pred hccCCCceEEEeecCCH
Confidence 23468899999987543
No 124
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=74.44 E-value=9.9 Score=34.04 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=31.9
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+...++++.+++.+.|.+|-|||--.+..|..++
T Consensus 66 ~~~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia 101 (370)
T cd08192 66 TEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVA 101 (370)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 456789999999999999999999999999887775
No 125
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=74.06 E-value=46 Score=26.99 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=47.1
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
.||++...-+.|-.+.++.++.+.+.+.|+.+.-+.. ... ++.
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~----------------------------------~~~---~~~ 43 (264)
T cd01574 1 TIGVVTTDLALHGPSSTLAAIESAAREAGYAVTLSML----------------------------------AEA---DEE 43 (264)
T ss_pred CEEEEeCCCCcccHHHHHHHHHHHHHHCCCeEEEEeC----------------------------------CCC---chH
Confidence 3788888888888888888888888887876643210 000 113
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
...+..+.+.+.++|++++.+-+.+.
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~~~~ 69 (264)
T cd01574 44 ALRAAVRRLLAQRVDGVIVNAPLDDA 69 (264)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCh
Confidence 34566777788889998888765544
No 126
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=73.65 E-value=3.3 Score=27.59 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHH
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGAN 110 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~ 110 (197)
..+..+.|++|+|| ++.||+-|+..|-
T Consensus 12 ~p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 12 DPRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred ChHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 45678999999999 6899999998774
No 127
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=73.59 E-value=8.3 Score=35.31 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=32.1
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+...++++.+++.+.|.+|-|||--.+..|..++
T Consensus 65 ~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia 100 (414)
T cd08190 65 TDESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAAN 100 (414)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 457789999999999999999999999999887775
No 128
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=73.52 E-value=49 Score=27.05 Aligned_cols=67 Identities=25% Similarity=0.244 Sum_probs=43.1
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++..--..|-...++.++.+.+..+|+++.-+. + .. ..+++.
T Consensus 2 Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~---------------------------------~-~~--~~~~~~ 45 (273)
T cd06310 2 IALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQG---------------------------------P-AS--ETDVAG 45 (273)
T ss_pred eEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEec---------------------------------C-cc--CCCHHH
Confidence 56666544567777778888887777776554210 0 00 012344
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~g 104 (197)
..++.+++..+++|++|+.+.+.
T Consensus 46 ~~~~i~~l~~~~vdgvii~~~~~ 68 (273)
T cd06310 46 QVNLLENAIARGPDAILLAPTDA 68 (273)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCh
Confidence 56778888889999999987653
No 129
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=73.46 E-value=13 Score=33.52 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=31.2
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+...++++.+++.+.|.+|-|||--++..|..++
T Consensus 72 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia 107 (382)
T PRK10624 72 TIEVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIG 107 (382)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHH
Confidence 346788899999999999999999999999987665
No 130
>PRK00861 putative lipid kinase; Reviewed
Probab=73.45 E-value=5 Score=34.76 Aligned_cols=29 Identities=34% Similarity=0.648 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a 109 (197)
+..++++...+.+.|.++++|||||+..+
T Consensus 45 ~a~~~a~~~~~~~~d~vv~~GGDGTl~ev 73 (300)
T PRK00861 45 GADQLAQEAIERGAELIIASGGDGTLSAV 73 (300)
T ss_pred CHHHHHHHHHhcCCCEEEEECChHHHHHH
Confidence 34566666667888999999999999775
No 131
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=73.28 E-value=54 Score=27.44 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=46.3
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-+.|-...++.++.+.+...|+++.-+. +.. +++.
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----------------------------------~~~----~~~~ 43 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKELGAEVIVQN----------------------------------ANG----DPAK 43 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC----------------------------------CCC----CHHH
Confidence 67888767778888888888888888887765220 000 1234
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..++.+.+...++|++++.+.+.+
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~ 67 (288)
T cd01538 44 QISQIENMIAKGVDVLVIAPVDGE 67 (288)
T ss_pred HHHHHHHHHHcCCCEEEEecCChh
Confidence 456777788899999999876543
No 132
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=73.27 E-value=14 Score=32.99 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=31.0
Q ss_pred ChhHHHHHHHHHHHhC--CcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRG--ITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~--I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+..+++.+.+++.+ .|.+|-|||--.+..|..++
T Consensus 63 t~~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia 100 (355)
T TIGR03405 63 DVAQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLA 100 (355)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHH
Confidence 4567888999999888 99999999999999887765
No 133
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=72.89 E-value=50 Score=26.91 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=43.6
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-.-|=....+.++-+.+...|+++.-+. +.. +++.
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~----------------------------------~~~----~~~~ 43 (273)
T cd06305 2 IAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYD----------------------------------AGG----DDAK 43 (273)
T ss_pred eEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEEC----------------------------------CCC----CHHH
Confidence 67777766677778888888888888777665321 000 1233
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~g 104 (197)
..+..+.+...++|++|+..++.
T Consensus 44 ~~~~l~~~~~~~vdgii~~~~~~ 66 (273)
T cd06305 44 QADQIDQAIAQKVDAIIIQHGRA 66 (273)
T ss_pred HHHHHHHHHHcCCCEEEEecCCh
Confidence 44566667777999999987764
No 134
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=72.76 E-value=25 Score=31.60 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=31.7
Q ss_pred ChhHHHHHHHHHHHh---CCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDR---GITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~---~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+..+++++.+++. +.|.+|-|||--++..|..++
T Consensus 63 t~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia 101 (347)
T cd08184 63 KTDQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVS 101 (347)
T ss_pred CHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHH
Confidence 456788999999988 999999999999999988776
No 135
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=72.41 E-value=12 Score=33.36 Aligned_cols=68 Identities=13% Similarity=0.250 Sum_probs=47.1
Q ss_pred cChhHHHHHHHHHHHhC---CcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCC
Q psy5987 77 REKAGRLKAAKNLIDRG---ITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDF 153 (197)
Q Consensus 77 ~~~~~~~~~~~~l~~~~---I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi 153 (197)
++.+..+++.+.+.+++ .|.+|.+||--.+..|..++-.+ ..+++.|.||-|. +
T Consensus 64 k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~--------------------~rgip~i~VPTTl---l 120 (344)
T cd08169 64 KTFETVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTL--------------------FRGIAFIRVPTTL---L 120 (344)
T ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh--------------------ccCCcEEEecCCc---c
Confidence 35577889999999877 89999999988888877665311 1378999999983 2
Q ss_pred CCCCCCCCchhHHH
Q psy5987 154 CGTDMTIGTDSALH 167 (197)
Q Consensus 154 ~g~d~s~GfdTA~~ 167 (197)
..+|.++|.-++++
T Consensus 121 a~~ds~~g~k~~i~ 134 (344)
T cd08169 121 AQSDSGVGGKTGIN 134 (344)
T ss_pred cccccCccceEeEe
Confidence 23344444444433
No 136
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=72.07 E-value=9.5 Score=33.62 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHh-CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCC
Q psy5987 79 KAGRLKAAKNLIDR-GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGT 156 (197)
Q Consensus 79 ~~~~~~~~~~l~~~-~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~ 156 (197)
.+..+++.+.+++. +.|.+|-+||--.+..|..++. ..++++|.||-|.-+|-..+
T Consensus 60 ~~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~----------------------~~~~p~i~vPTt~~tgs~~s 116 (331)
T cd08174 60 NSDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAF----------------------LRGIPLSVPTTNLNDDGIAS 116 (331)
T ss_pred ccCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHh----------------------hcCCCEEEecCccccCcccc
Confidence 34566777777776 5999999999988888876652 13789999999987765443
No 137
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=71.83 E-value=13 Score=29.47 Aligned_cols=85 Identities=9% Similarity=0.147 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCC---
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCG--- 155 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g--- 155 (197)
.++.+++.+.+++++.+.+ +|||++ ..+..|.+...++++++- ..+....++|+. +|++++-
T Consensus 49 ~~~~~~l~~~i~~~kP~vI-~v~g~~--~~s~~l~~~v~~~v~~~~--------~~~~~~~i~V~~----v~~~~A~lY~ 113 (150)
T PF14639_consen 49 EEDMERLKKFIEKHKPDVI-AVGGNS--RESRKLYDDVRDIVEELD--------EDEQMPPIPVVI----VDDEVARLYS 113 (150)
T ss_dssp HHHHHHHHHHHHHH--SEE-EE--SS--THHHHHHHHHHHHHHHTT--------B-TTS-B--EEE-------TTHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEE-EEcCCC--hhHHHHHHHHHHHHHHhh--------hcccCCCceEEE----ECcHHHHHHh
Confidence 4567778889999999955 557764 355677766555555432 112234566653 4555531
Q ss_pred -----CCCCCCchhHHHHHHHHHHHHHH
Q psy5987 156 -----TDMTIGTDSALHRIIEAIDAIVS 178 (197)
Q Consensus 156 -----~d~s~GfdTA~~~~~~~i~~l~~ 178 (197)
.+-=+.++..++.+...-++++.
T Consensus 114 ~S~rA~~EFP~~p~~~R~AIslAR~lQd 141 (150)
T PF14639_consen 114 NSKRAAEEFPDYPPLLRYAISLARYLQD 141 (150)
T ss_dssp TSHHHHHHSTT--HHHHHHHHHHHHHH-
T ss_pred cCHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 12236778788877777776653
No 138
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=71.67 E-value=12 Score=30.12 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=33.3
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
+++...+.+++.++.+++.+|.+.|-...-. -...-....+||+||...
T Consensus 38 tp~~~~~~~~~a~~~g~~viIa~AG~aa~Lp-----------------------gvva~~t~~PVIgvP~~~ 86 (156)
T TIGR01162 38 TPELMLEYAKEAEERGIKVIIAGAGGAAHLP-----------------------GMVAALTPLPVIGVPVPS 86 (156)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCccchhH-----------------------HHHHhccCCCEEEecCCc
Confidence 5678888999999889887777655432221 122234688999999754
No 139
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=71.64 E-value=12 Score=33.69 Aligned_cols=67 Identities=9% Similarity=0.063 Sum_probs=44.1
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHH---HhhcCCceEEEeeeeccc
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQ---REKYCHLHIAGLVGSIDN 151 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~---~~~~~~i~vvgiPkTIDN 151 (197)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-. + ...+++..+. +.....+++|.||-|--.
T Consensus 71 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~----~---~~~~~~~~~~~~~~~~~~~~P~iaIPTTagT 140 (382)
T cd08187 71 RLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAG----A---PYDGDVWDFFTGKAKIEKALPVGTVLTLAAT 140 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhH----h---hCCCCHHHHhcccCCCCCCCCEEEEeCCCch
Confidence 35678899999999999999999999888888776521 0 0001111110 011246899999987543
No 140
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=71.24 E-value=9 Score=33.14 Aligned_cols=30 Identities=20% Similarity=0.436 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGAN 110 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~ 110 (197)
+.+++++.+.+.+.|.++++|||||+..+.
T Consensus 40 ~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ 69 (293)
T TIGR03702 40 DAQRYVAEALALGVSTVIAGGGDGTLREVA 69 (293)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCChHHHHHH
Confidence 345566666667789999999999997653
No 141
>KOG1116|consensus
Probab=70.42 E-value=9.2 Score=36.88 Aligned_cols=69 Identities=25% Similarity=0.267 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCC-CC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGT-DM 158 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~-d~ 158 (197)
.+.+.+++.+.--+-|+++++||||.+- |+|+=|++. ...+....++|--||.=-.|.+..+ -.
T Consensus 223 ~HArei~rt~dl~kyDgIv~vsGDGl~h----------EVlNGLl~R-----~D~~~~~klPigiiP~GSGNala~Sv~~ 287 (579)
T KOG1116|consen 223 NHAREIVRTLDLGKYDGIVCVSGDGLLH----------EVLNGLLER-----PDWEAAVKLPIGIIPCGSGNALAKSVLW 287 (579)
T ss_pred cHHHHHHHhhhccccceEEEecCCcCHH----------Hhhhccccc-----cchhhHhcCceeEeecCCccHHHHHhhc
Confidence 4567889999888999999999999774 356655543 3344556789999999999999763 35
Q ss_pred CCCch
Q psy5987 159 TIGTD 163 (197)
Q Consensus 159 s~Gfd 163 (197)
+-||+
T Consensus 288 ~~~~~ 292 (579)
T KOG1116|consen 288 TNGPD 292 (579)
T ss_pred ccCcc
Confidence 66763
No 142
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=70.34 E-value=15 Score=33.14 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=30.8
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+...++++.+++.+.|.+|-|||--.+..|..++
T Consensus 70 ~~~~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia 105 (377)
T cd08188 70 RDEEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIG 105 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 356678889999999999999999999999986654
No 143
>PRK13059 putative lipid kinase; Reviewed
Probab=70.08 E-value=9.2 Score=33.20 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=29.3
Q ss_pred HHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCC
Q psy5987 90 IDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFC 154 (197)
Q Consensus 90 ~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~ 154 (197)
.+.+.|.+|++|||||+..+.. -|+ +...++++-.||.==-||+.
T Consensus 53 ~~~~~d~vi~~GGDGTv~evv~----------gl~----------~~~~~~~lgviP~GTgNdfA 97 (295)
T PRK13059 53 IDESYKYILIAGGDGTVDNVVN----------AMK----------KLNIDLPIGILPVGTANDFA 97 (295)
T ss_pred hhcCCCEEEEECCccHHHHHHH----------HHH----------hcCCCCcEEEECCCCHhHHH
Confidence 3567899999999999986531 111 12234666667866667664
No 144
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=68.90 E-value=9.5 Score=32.75 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=19.4
Q ss_pred HHHHHHhCCcEEEEecCCCcHHHHH
Q psy5987 86 AKNLIDRGITNLVVIGGDGSLTGAN 110 (197)
Q Consensus 86 ~~~l~~~~I~~LiviGG~gs~~~a~ 110 (197)
++...+.+.|.+|++|||||+..+.
T Consensus 50 ~~~~~~~~~d~ivv~GGDGTl~~v~ 74 (293)
T TIGR00147 50 VEEARKFGVDTVIAGGGDGTINEVV 74 (293)
T ss_pred HHHHHhcCCCEEEEECCCChHHHHH
Confidence 3444456899999999999998753
No 145
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=68.15 E-value=6.5 Score=37.45 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHh---CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCC
Q psy5987 79 KAGRLKAAKNLIDR---GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCG 155 (197)
Q Consensus 79 ~~~~~~~~~~l~~~---~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g 155 (197)
.+..+++.+.+.+. +-|.+|-+||--.+..|..++-.| ..++++|.||-|. ++.
T Consensus 252 l~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y--------------------~rGi~~i~vPTTl---lA~ 308 (542)
T PRK14021 252 IEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATW--------------------MRGIRYVNCPTSL---LAM 308 (542)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHH--------------------HcCCCEEEeCChH---Hhh
Confidence 35567777888887 489999999988888877665321 1379999999985 233
Q ss_pred CCCCCCchhH
Q psy5987 156 TDMTIGTDSA 165 (197)
Q Consensus 156 ~d~s~GfdTA 165 (197)
+|.|+|.-|+
T Consensus 309 vDss~ggkt~ 318 (542)
T PRK14021 309 VDASTGGKTG 318 (542)
T ss_pred hccccCCceE
Confidence 3444444333
No 146
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=68.08 E-value=64 Score=26.19 Aligned_cols=67 Identities=9% Similarity=0.034 Sum_probs=47.5
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
.||++...=+.|..+.++.++.+.+...|++++-+. . .. +++
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--------~--------------------------~~----~~~ 42 (265)
T cd06291 1 LIGLIVPTISNPFFSELARAVEKELYKKGYKLILCN--------S--------------------------DN----DPE 42 (265)
T ss_pred CEEEEECCCCChhHHHHHHHHHHHHHHCCCeEEEec--------C--------------------------Cc----cHH
Confidence 478888877888999999999888888887765320 0 00 112
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
......+.+...++|++|+.+.+..
T Consensus 43 ~~~~~i~~~~~~~~dgiii~~~~~~ 67 (265)
T cd06291 43 KEREYLEMLRQNQVDGIIAGTHNLG 67 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCcC
Confidence 3346667788899999999887644
No 147
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=67.72 E-value=65 Score=26.14 Aligned_cols=125 Identities=12% Similarity=0.217 Sum_probs=75.2
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++......|-...+..++-+.+...|+++.-+ ... . .+.+.
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~-------~~~--------------------------~----~d~~~ 43 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIV-------FDA--------------------------Q----NDPEE 43 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEE-------EES--------------------------T----TTHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEe-------CCC--------------------------C----CCHHH
Confidence 6788888888877778888888888888876543 000 0 02345
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccC-C--CCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDND-F--CGTDM 158 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDND-i--~g~d~ 158 (197)
..+.++++...++|++|+..-+.+... ..+ ++ +++ .+++|| ++|+| . .....
T Consensus 44 q~~~i~~~i~~~~d~Iiv~~~~~~~~~-~~l--------~~----------~~~--~gIpvv----~~d~~~~~~~~~~~ 98 (257)
T PF13407_consen 44 QIEQIEQAISQGVDGIIVSPVDPDSLA-PFL--------EK----------AKA--AGIPVV----TVDSDEAPDSPRAA 98 (257)
T ss_dssp HHHHHHHHHHTTESEEEEESSSTTTTH-HHH--------HH----------HHH--TTSEEE----EESSTHHTTSTSSE
T ss_pred HHHHHHHHHHhcCCEEEecCCCHHHHH-HHH--------HH----------Hhh--cCceEE----EEecccccccccee
Confidence 667888888999999998877764432 222 11 122 367777 46777 2 23446
Q ss_pred CCCchhHHHHHHHHHHHHHHhhccCCcEEEE
Q psy5987 159 TIGTDSALHRIIEAIDAIVSTAYSHQRTFIM 189 (197)
Q Consensus 159 s~GfdTA~~~~~~~i~~l~~~a~S~~rv~iv 189 (197)
.+|+|.. .......+.+......+.++.++
T Consensus 99 ~v~~d~~-~~G~~~a~~l~~~~~~~~~v~~~ 128 (257)
T PF13407_consen 99 YVGTDNY-EAGKLAAEYLAEKLGAKGKVLIL 128 (257)
T ss_dssp EEEE-HH-HHHHHHHHHHHHHHTTTEEEEEE
T ss_pred eeeccHH-HHHHHHHHHHHHHhccCceEEec
Confidence 7777632 34444444444444333444443
No 148
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=66.97 E-value=14 Score=33.48 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHH---HhhcCCceEEEeeee
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQ---REKYCHLHIAGLVGS 148 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~---~~~~~~i~vvgiPkT 148 (197)
.+...+.++.+++.+.|.+|-|||--.+..|..++-. + ...+.+..+. +.....+++|.||-|
T Consensus 65 ~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~----~---~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 65 RSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLL----L---AHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH----H---hCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 3456777888999999999999999999998877631 1 0001111110 111236899999988
No 149
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=66.94 E-value=66 Score=25.96 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=43.1
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
+||++..--..|-.+.++.++.+.+...|+++.-+ .+. .+++
T Consensus 1 ~I~vv~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~----------------------------------~~~----~~~~ 42 (268)
T cd06323 1 TIGLSVSTLNNPFFVTLKDGAQKEAKELGYELTVL----------------------------------DAQ----NDAA 42 (268)
T ss_pred CeeEecccccCHHHHHHHHHHHHHHHHcCceEEec----------------------------------CCC----CCHH
Confidence 46777776778888888888888887777665311 001 0223
Q ss_pred HHHHHHHHHHHhCCcEEEEec
Q psy5987 81 GRLKAAKNLIDRGITNLVVIG 101 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviG 101 (197)
...+..+.+...++|++++.+
T Consensus 43 ~~~~~~~~~~~~~~dgii~~~ 63 (268)
T cd06323 43 KQLNDIEDLITRGVDAIIINP 63 (268)
T ss_pred HHHHHHHHHHHcCCCEEEEcC
Confidence 445677778888999999864
No 150
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=66.73 E-value=14 Score=33.84 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHhCCc---EEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCC
Q psy5987 80 AGRLKAAKNLIDRGIT---NLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGT 156 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~---~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~ 156 (197)
+...++.+.+.+++.+ .+|-+||--++..|..++-. ...+++.|.||.| =+..+
T Consensus 95 ~~v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~--------------------~~rgip~I~IPTT---lla~v 151 (389)
T PRK06203 95 ALVEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAAT--------------------AHRGVRLIRIPTT---VLAQN 151 (389)
T ss_pred HHHHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHH--------------------hcCCCCEEEEcCC---Ccccc
Confidence 5588999999999998 99999998888887665420 0136899999999 22334
Q ss_pred CCCCCchhHHH
Q psy5987 157 DMTIGTDSALH 167 (197)
Q Consensus 157 d~s~GfdTA~~ 167 (197)
|.+.|.-++++
T Consensus 152 da~~g~~~~v~ 162 (389)
T PRK06203 152 DSGVGVKNGIN 162 (389)
T ss_pred CCCccchhhee
Confidence 54555444444
No 151
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=66.55 E-value=13 Score=33.88 Aligned_cols=66 Identities=12% Similarity=0.181 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHhCCc---EEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCC
Q psy5987 80 AGRLKAAKNLIDRGIT---NLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGT 156 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~---~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~ 156 (197)
+...++.+.+.+++.+ .+|.+||--.+..|..++-. ...+++.|.||.| =+.-+
T Consensus 83 ~~v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~--------------------~~rGip~I~IPTT---lla~v 139 (369)
T cd08198 83 DLVEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAAT--------------------AHRGVRLIRIPTT---VLAQN 139 (369)
T ss_pred HHHHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHH--------------------hcCCCCEEEECCC---chhhh
Confidence 5578899999999998 99999998777777655421 1237999999999 22335
Q ss_pred CCCCCchhHHHH
Q psy5987 157 DMTIGTDSALHR 168 (197)
Q Consensus 157 d~s~GfdTA~~~ 168 (197)
|.++|--++++.
T Consensus 140 Ds~~g~k~~vn~ 151 (369)
T cd08198 140 DSGVGVKNGINA 151 (369)
T ss_pred CCCeeeeecccC
Confidence 555665555554
No 152
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.93 E-value=71 Score=25.92 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=45.7
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
.+|++...-.-|=.+.++.++.+.+...|++++-+. +. .+++
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~~gy~~~~~~----------------------------------~~----~~~~ 42 (265)
T cd06290 1 TIGVLTQDFASPFYGRILKGMERGLNGSGYSPIIAT----------------------------------GH----WNQS 42 (265)
T ss_pred CEEEEECCCCCchHHHHHHHHHHHHHHCCCEEEEEe----------------------------------CC----CCHH
Confidence 367777766778888888888888888887765331 00 0123
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
...++.+.+...++|++++.+.+
T Consensus 43 ~~~~~i~~l~~~~~dgiii~~~~ 65 (265)
T cd06290 43 RELEALELLKSRRVDALILLGGD 65 (265)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCC
Confidence 45567778888889999888765
No 153
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=65.69 E-value=62 Score=25.19 Aligned_cols=50 Identities=24% Similarity=0.172 Sum_probs=30.9
Q ss_pred HHHHHHhCCcEEEE-ecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEee
Q psy5987 86 AKNLIDRGITNLVV-IGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLV 146 (197)
Q Consensus 86 ~~~l~~~~I~~Liv-iGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiP 146 (197)
.+.+..++-|.+++ +|.|+..... .+.+. +++++ +..++.+++.+|+.++
T Consensus 50 ~~~~~~~~pd~vii~~G~ND~~~~~-~~~~~----~~~~i------~~i~~~~p~~~iil~~ 100 (177)
T cd01844 50 AELLRDVPADLYIIDCGPNIVGAEA-MVRER----LGPLV------KGLRETHPDTPILLVS 100 (177)
T ss_pred HHHHHhcCCCEEEEEeccCCCccHH-HHHHH----HHHHH------HHHHHHCcCCCEEEEe
Confidence 34456678887766 8999876553 33333 34444 3456667777777664
No 154
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=65.64 E-value=81 Score=26.47 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=42.6
Q ss_pred ChhhhhhhhhhcCceecccCCCCccC-----hhHHHHHHHHHHHhCCcEEEEecC---CCcHHHHHHHHHHhHHHHHHHH
Q psy5987 53 NWSSVSSIIHKGGTVIGSARCSDFRE-----KAGRLKAAKNLIDRGITNLVVIGG---DGSLTGANLFRQEWPELLDQLL 124 (197)
Q Consensus 53 ~~~~v~~~~~~gGs~LgssR~~~~~~-----~~~~~~~~~~l~~~~I~~LiviGG---~gs~~~a~~l~~~~~~~l~~l~ 124 (197)
+++..+.+...||.+| |.+.+... -..+.+++..| =+++|+++. .||+.+|+...+
T Consensus 116 n~~l~~~i~~~gglli--Se~p~~~~~~~~~f~~RNriia~l----s~~vivve~~~~sGtl~ta~~A~~---------- 179 (220)
T TIGR00732 116 NSKLAAKIAENGGLLL--SEYPPDTKPIKYNFPKRNRIISGL----SRAVLVVEAPLKSGALITARYALE---------- 179 (220)
T ss_pred hHHHHHHHHHcCCEEE--EecCCCCCCCcccHHHHHHHHHHh----cCEEEEEECCCCCchHHHHHHHHH----------
Confidence 3445566777787777 33333211 12344444443 377888886 588888765432
Q ss_pred hcCCCcHHHHhhcCCceEEEeeeeccc
Q psy5987 125 KDGSITKDQREKYCHLHIAGLVGSIDN 151 (197)
Q Consensus 125 ~~~~~~~~~~~~~~~i~vvgiPkTIDN 151 (197)
.+-+|.++|..+++
T Consensus 180 -------------~gr~v~~~pg~~~~ 193 (220)
T TIGR00732 180 -------------QGREVFAYPGDLNS 193 (220)
T ss_pred -------------hCCcEEEEcCCCCC
Confidence 25688999988775
No 155
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=64.60 E-value=69 Score=25.34 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=29.4
Q ss_pred CCc-EEEEecCCCcHHHHH------------HHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEee
Q psy5987 93 GIT-NLVVIGGDGSLTGAN------------LFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLV 146 (197)
Q Consensus 93 ~I~-~LiviGG~gs~~~a~------------~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiP 146 (197)
+-| -++.+|+|+...... .-.+.|.+-|++++ ...++++++.+|+.++
T Consensus 68 ~~d~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i------~~ir~~~p~~~Ivv~~ 128 (204)
T cd04506 68 KADVITITIGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIF------KEIRKLNPDAPIFLVG 128 (204)
T ss_pred cCCEEEEEecchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHH------HHHHHHCCCCeEEEEe
Confidence 445 477789999765321 11234555666666 4567777777777664
No 156
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=64.50 E-value=89 Score=26.54 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
+...+..+.|..+++|++|+.+.+.
T Consensus 103 ~~~~~~~~~l~~~~vdgiIi~~~~~ 127 (327)
T TIGR02417 103 DQEKVVIENLLARQVDALIVASCMP 127 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 4445677888999999999987654
No 157
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=64.36 E-value=36 Score=28.04 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=51.7
Q ss_pred EEEEEcCcchhhccCC-------CCeEECChhhhhhhhhhcCceecccCCCCccChhHHHHHHHHHHHhCCcEEEEecCC
Q psy5987 31 KVFFIKEGYQGMVDGG-------DNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 31 ~v~g~~~G~~GL~~~~-------~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
.++++=.|..=|.+.. .++--++.+....+.. .|..+ -+.++.++.-+.+++++.+.+++.+-++++|+.
T Consensus 20 ~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~-~~~~~--~~~~~eKD~TD~e~Al~~~~~~~~~~i~i~Ga~ 96 (203)
T TIGR01378 20 LVIAADGGANHLLKLGLTPDLIVGDFDSIDEEELDFYKK-AGVKI--IVFPPEKDTTDLELALKYALERGADEITILGAT 96 (203)
T ss_pred EEEEEChHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHH-cCCce--EEcCCCCCCCHHHHHHHHHHHCCCCEEEEEcCC
Confidence 6889989988877652 1344445555555543 34422 133444455688999999999999999999998
Q ss_pred CcHHHHHHHH
Q psy5987 104 GSLTGANLFR 113 (197)
Q Consensus 104 gs~~~a~~l~ 113 (197)
|.- -=|.|+
T Consensus 97 GgR-~DH~la 105 (203)
T TIGR01378 97 GGR-LDHTLA 105 (203)
T ss_pred CCc-HHHHHH
Confidence 873 324444
No 158
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=64.29 E-value=6.5 Score=33.89 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=35.9
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFC 154 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~ 154 (197)
+.+...++.+.++..+.|.++-+||--....+...+.. .+++.+.||.+..||=.
T Consensus 60 ~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~----------------------~~~p~isVPTa~S~DG~ 114 (250)
T PF13685_consen 60 DEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFE----------------------LGIPFISVPTAASHDGF 114 (250)
T ss_dssp BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHH----------------------HT--EEEEES--SSGGG
T ss_pred CHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHh----------------------cCCCEEEeccccccccc
Confidence 45667788888888899999999997666666655532 27899999999999864
No 159
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=64.12 E-value=8.9 Score=28.87 Aligned_cols=66 Identities=26% Similarity=0.334 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhC-CcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRG-ITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTI 160 (197)
Q Consensus 82 ~~~~~~~l~~~~-I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~ 160 (197)
.+.+.+..+..+ .+.++++|||||+..+. +.+++.. .+ ..+++..+|.=--||+.- ++
T Consensus 42 ~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv----------~~l~~~~------~~--~~~~l~iiP~GT~N~~ar---~l 100 (130)
T PF00781_consen 42 AEALARILALDDYPDVIVVVGGDGTLNEVV----------NGLMGSD------RE--DKPPLGIIPAGTGNDFAR---SL 100 (130)
T ss_dssp HHHHHHHHHHTTS-SEEEEEESHHHHHHHH----------HHHCTST------SS--S--EEEEEE-SSS-HHHH---HT
T ss_pred HHHHHHHHhhccCccEEEEEcCccHHHHHH----------HHHhhcC------CC--ccceEEEecCCChhHHHH---Hc
Confidence 334444333333 48999999999997652 2232210 00 035777899877788753 45
Q ss_pred CchhHHHH
Q psy5987 161 GTDSALHR 168 (197)
Q Consensus 161 GfdTA~~~ 168 (197)
|+.+-...
T Consensus 101 g~~~~~~~ 108 (130)
T PF00781_consen 101 GIPSDPEA 108 (130)
T ss_dssp T--SSHHH
T ss_pred CCCCCcHH
Confidence 55554444
No 160
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=64.07 E-value=7 Score=39.66 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=69.3
Q ss_pred eCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcch----------hhccCCCCeEECChhhhhhhhhhcCceecccCCCC
Q psy5987 6 NKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQ----------GMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSD 75 (197)
Q Consensus 6 ~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~----------GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~ 75 (197)
+.-|++.+....+--+....+..||+|+=+.-|-. |.+.. .+.+....+.+.+...+|..+ |..-
T Consensus 260 qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~--~~~~~~dg~yq~~~~~~ga~~---R~~f 334 (889)
T TIGR03186 260 RLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALAR--AFAHTVDGQFQTFSANDGAYN---RARF 334 (889)
T ss_pred ccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHH--HHHhcccHHHHHHhhcchHHH---HHHh
Confidence 45678887334455666666778999988754433 44444 567777788999999999977 4343
Q ss_pred ccChhHHHHHHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 76 FREKAGRLKAAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
|...++.+++++.+...+|..|.- ||.+-.+-
T Consensus 335 f~~~~~~~~lv~~~sD~~i~~l~r-gGHD~~~i 366 (889)
T TIGR03186 335 FGQDPALAALVAHLSDEDIDRLRR-GGHDARKL 366 (889)
T ss_pred cCccHHHHHHhhcccHHhhhhhcC-CCCCHHHH
Confidence 445678999999999999998877 88874433
No 161
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=64.06 E-value=27 Score=27.12 Aligned_cols=40 Identities=18% Similarity=0.368 Sum_probs=23.0
Q ss_pred EEEecCCCcHHH----HHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEee
Q psy5987 97 LVVIGGDGSLTG----ANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLV 146 (197)
Q Consensus 97 LiviGG~gs~~~----a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiP 146 (197)
+|.+|.|+.... ...+.+. +++|+ +..+++++..+|+.++
T Consensus 60 ii~~G~ND~~~~~~~~~~~~~~~----~~~li------~~i~~~~p~~~i~~~~ 103 (169)
T cd01831 60 VINLGTNDFSTGNNPPGEDFTNA----YVEFI------EELRKRYPDAPIVLML 103 (169)
T ss_pred EEECCcCCCCCCCCCCHHHHHHH----HHHHH------HHHHHHCCCCeEEEEe
Confidence 456677876432 3334333 44444 4556777777777665
No 162
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=63.71 E-value=85 Score=26.08 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=46.1
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|.....+.++.+.+...|++++-.. +. .++++
T Consensus 3 ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~~~~~~----------------------------------~~----~~~~~ 44 (280)
T cd06315 3 IIFVASDLKNGGILGVGEGVREAAKAIGWNLRILD----------------------------------GR----GSEAG 44 (280)
T ss_pred EEEEecccCCcHHHHHHHHHHHHHHHcCcEEEEEC----------------------------------CC----CCHHH
Confidence 67777777778888888888888888777664220 00 01234
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~ 103 (197)
..++.+.+..+++|++|+.+.+
T Consensus 45 ~~~~i~~l~~~~vdgiil~~~~ 66 (280)
T cd06315 45 QAAALNQAIALKPDGIVLGGVD 66 (280)
T ss_pred HHHHHHHHHHcCCCEEEEcCCC
Confidence 5578888999999999999755
No 163
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=63.14 E-value=26 Score=35.23 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+..+++++.+++.+.|.+|-|||--.+..|..++
T Consensus 524 ~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia 559 (862)
T PRK13805 524 TLSTVRKGAELMRSFKPDTIIALGGGSPMDAAKIMW 559 (862)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 456788999999999999999999999999987775
No 164
>PRK12361 hypothetical protein; Provisional
Probab=62.69 E-value=13 Score=35.24 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a 109 (197)
+..+.++...+.+.|.+|++|||||+..+
T Consensus 285 ~a~~la~~~~~~~~d~Viv~GGDGTl~ev 313 (547)
T PRK12361 285 SAEALAKQARKAGADIVIACGGDGTVTEV 313 (547)
T ss_pred cHHHHHHHHHhcCCCEEEEECCCcHHHHH
Confidence 34556666666788999999999999765
No 165
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=62.43 E-value=8.3 Score=39.03 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=69.8
Q ss_pred eCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCc--chhhccCC------CCeEECChhhhhhhhhhcCceecccCCCCcc
Q psy5987 6 NKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEG--YQGMVDGG------DNIVEANWSSVSSIIHKGGTVIGSARCSDFR 77 (197)
Q Consensus 6 ~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G--~~GL~~~~------~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~ 77 (197)
+.-|++.|.-+.+..+-...+..||+|+=+.-| |+-|+..+ ..+.+....+.+.+...+|..+ |...|.
T Consensus 260 qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~---R~~ffg 336 (885)
T TIGR00759 260 RLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYV---REHFFN 336 (885)
T ss_pred ccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHH---HHHhcc
Confidence 456788874444556666666779999988644 55444331 1566666778889999999977 334344
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
..++.+++++.+...+|..| =.||.+-.+-
T Consensus 337 ~~~~l~~lv~~~sD~~i~~l-~rgGHD~~~I 366 (885)
T TIGR00759 337 RTPELKALVADMSDADIWAL-NRGGHDPRKV 366 (885)
T ss_pred ccHHHHHHhhccchhhhhhc-cCCCCCHHHH
Confidence 55789999999999999988 8889874433
No 166
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=61.77 E-value=1.1e+02 Score=26.84 Aligned_cols=31 Identities=10% Similarity=0.356 Sum_probs=24.6
Q ss_pred eecccCCCCccChhHHHHHHHHHHHhCCcEEEEec
Q psy5987 67 VIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIG 101 (197)
Q Consensus 67 ~LgssR~~~~~~~~~~~~~~~~l~~~~I~~LiviG 101 (197)
+|.++.. +++..+++.+.+...++|++|+.|
T Consensus 92 ~l~~~~~----~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 92 LLANTDD----DPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred EEECCCC----CHHHHHHHHHHHHHcCCCEEEEec
Confidence 4455444 356678899999999999999999
No 167
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=60.19 E-value=17 Score=29.07 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=27.6
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeee
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGS 148 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkT 148 (197)
+++.+.+.++++++.+.+.+|.+-|-...-.. . ..-....+||+||..
T Consensus 40 ~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpg-v----------------------va~~t~~PVIgvP~~ 87 (150)
T PF00731_consen 40 TPERLLEFVKEYEARGADVIIAVAGMSAALPG-V----------------------VASLTTLPVIGVPVS 87 (150)
T ss_dssp SHHHHHHHHHHTTTTTESEEEEEEESS--HHH-H----------------------HHHHSSS-EEEEEE-
T ss_pred CHHHHHHHHHHhccCCCEEEEEECCCcccchh-h----------------------heeccCCCEEEeecC
Confidence 45667777777777777766666554333221 1 122358899999955
No 168
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=59.99 E-value=94 Score=25.31 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=43.3
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHH-cCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccCh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIY-LGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREK 79 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~-~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~ 79 (197)
+||++...-..|=...++.++.+.+.. .|++++-. .+. .++
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~----------------------------------~~~----~~~ 42 (272)
T cd06301 1 KIGVSMANFDDNFLTLLRNAMKEHAKVLGGVELQFE----------------------------------DAK----NDV 42 (272)
T ss_pred CeeEeecccCCHHHHHHHHHHHHHHHHcCCcEEEEe----------------------------------CCC----CCH
Confidence 467777766667777777777777766 66555422 000 022
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
+...+..+.+.+.++|++++.+-+.
T Consensus 43 ~~~~~~i~~l~~~~vdgiii~~~~~ 67 (272)
T cd06301 43 ATQLSQVENFIAQGVDAIIVVPVDT 67 (272)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCch
Confidence 3445667778888999999987663
No 169
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=58.73 E-value=24 Score=31.01 Aligned_cols=110 Identities=22% Similarity=0.367 Sum_probs=62.2
Q ss_pred EEEEEcCcchhhccCCCCeEECChhhhhhh-hhhcCceecccCCCCccChhHHHHHHHHHHHhCCcEEEEecCCCcHHH-
Q psy5987 31 KVFFIKEGYQGMVDGGDNIVEANWSSVSSI-IHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTG- 108 (197)
Q Consensus 31 ~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~-~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~- 108 (197)
++..|+|-..| ++ + ..-.|+.+... ...|.+.. .|.-. .+.+..++++.+...+.|.+|+.|||||+..
T Consensus 4 ~~~~i~Np~sG--~~--~-~~~~~~~~~~~l~~~g~~~~--~~~t~--~~g~a~~~a~~a~~~~~D~via~GGDGTv~ev 74 (301)
T COG1597 4 KALLIYNPTSG--KG--K-AKKLLREVEELLEEAGHELS--VRVTE--EAGDAIEIAREAAVEGYDTVIAAGGDGTVNEV 74 (301)
T ss_pred eEEEEEccccc--cc--c-hhhHHHHHHHHHHhcCCeEE--EEEee--cCccHHHHHHHHHhcCCCEEEEecCcchHHHH
Confidence 45666677776 22 2 22234444443 33433321 12110 1135677788888889999999999999985
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCce-EEEeeeecccCCCCCCCCCCchh-HHHHHHHHHHH
Q psy5987 109 ANLFRQEWPELLDQLLKDGSITKDQREKYCHLH-IAGLVGSIDNDFCGTDMTIGTDS-ALHRIIEAIDA 175 (197)
Q Consensus 109 a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~-vvgiPkTIDNDi~g~d~s~GfdT-A~~~~~~~i~~ 175 (197)
++-|.+ .+.+ +--||.==-||+.- ++|... ....+++.+..
T Consensus 75 ingl~~-----------------------~~~~~LgilP~GT~NdfAr---~Lgip~~~~~~Al~~i~~ 117 (301)
T COG1597 75 ANGLAG-----------------------TDDPPLGILPGGTANDFAR---ALGIPLDDIEAALELIKS 117 (301)
T ss_pred HHHHhc-----------------------CCCCceEEecCCchHHHHH---HcCCCchhHHHHHHHHHc
Confidence 444432 1233 55678777788752 455554 24444444444
No 170
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=58.67 E-value=13 Score=28.11 Aligned_cols=45 Identities=24% Similarity=0.243 Sum_probs=28.9
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCC
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFC 154 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~ 154 (197)
..|.++++|||||+..+- +-|++. ..+...+++..+|.==-||+.
T Consensus 49 ~~d~vvv~GGDGTi~~vv----------n~l~~~-------~~~~~~~plgiiP~GTgNdfa 93 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVL----------NALDKR-------ELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred cCCEEEEEccccHHHHHH----------HHHHhc-------ccccCCCcEEEeCCCChhHHH
Confidence 457999999999997652 222210 001112678889977789986
No 171
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=58.35 E-value=27 Score=27.62 Aligned_cols=34 Identities=12% Similarity=-0.061 Sum_probs=18.1
Q ss_pred eEEEeCCCCh--h-hHhHHHHHHHHHHHHcCCEEEEE
Q psy5987 2 TAQVNKKSSS--T-GMNAAVRACVRMGIYLGCKVFFI 35 (197)
Q Consensus 2 ~aIl~sGG~a--p-G~Na~i~~~v~~~~~~g~~v~g~ 35 (197)
++++.+|+.. | --+.++.-+.+.+...|.+++|.
T Consensus 81 v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~ 117 (167)
T TIGR01752 81 VALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGF 117 (167)
T ss_pred EEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEce
Confidence 3455555432 1 23445555555555667777664
No 172
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=58.06 E-value=1.2e+02 Score=27.11 Aligned_cols=95 Identities=21% Similarity=0.329 Sum_probs=63.7
Q ss_pred EEEeCCCChhhHhHHHH-HHHHHHHHcCCEEEEEcCcc--hhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccCh
Q psy5987 3 AQVNKKSSSTGMNAAVR-ACVRMGIYLGCKVFFIKEGY--QGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREK 79 (197)
Q Consensus 3 aIl~sGG~apG~Na~i~-~~v~~~~~~g~~v~g~~~G~--~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~ 79 (197)
.++.||...||+..-.+ .+++.++.+|..|+-=..|= .-.++..+.++.-+.++++.|.+.. +.+.
T Consensus 132 ~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~P~lIKPN~~EL~~~~g~~-----------~~~~ 200 (310)
T COG1105 132 IVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAKPWLIKPNREELEALFGRE-----------LTTL 200 (310)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccCCcEEecCHHHHHHHhCCC-----------CCCh
Confidence 38899999999876554 56666778887776554442 1122222567777888888774331 2234
Q ss_pred hHHHHHHHHHHHhCCcEEE-EecCCCcHHH
Q psy5987 80 AGRLKAAKNLIDRGITNLV-VIGGDGSLTG 108 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~Li-viGG~gs~~~ 108 (197)
++..+.++.|...++..++ -.|++|++..
T Consensus 201 ~d~i~~a~~l~~~g~~~ViVSlG~~Gal~~ 230 (310)
T COG1105 201 EDVIKAARELLAEGIENVIVSLGADGALLV 230 (310)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecCcccEEE
Confidence 5666777779999998865 4899998753
No 173
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=57.36 E-value=1e+02 Score=24.95 Aligned_cols=35 Identities=9% Similarity=-0.056 Sum_probs=27.8
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEE
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFI 35 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~ 35 (197)
.+|++...-..|=...++.++.+.+.+.|++++-.
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~ 35 (261)
T cd06272 1 TIGLIWPSVSRVALTELVTGINQAISKNGYNMNVS 35 (261)
T ss_pred CEEEEecCCCchhHHHHHHHHHHHHHHcCCEEEEE
Confidence 47888877777888889999999988888877543
No 174
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=57.00 E-value=12 Score=38.11 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=70.8
Q ss_pred CCCChhhHhHHHHHHHHHHHHcCCEEEEEc--CcchhhccCCC------CeEECChhhhhhhhhhcCceecccCCCCccC
Q psy5987 7 KKSSSTGMNAAVRACVRMGIYLGCKVFFIK--EGYQGMVDGGD------NIVEANWSSVSSIIHKGGTVIGSARCSDFRE 78 (197)
Q Consensus 7 sGG~apG~Na~i~~~v~~~~~~g~~v~g~~--~G~~GL~~~~~------~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~ 78 (197)
.-|++.+....+.-+-...+..||+|+=+. ..|+-|+..+. .+.+....+.+.+...+|..+ |..-|..
T Consensus 275 lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~---r~~ff~~ 351 (896)
T PRK13012 275 LDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYN---REHFFGQ 351 (896)
T ss_pred ccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHH---HHHhccc
Confidence 467888755556666666677799998775 33554444321 455566678888999999977 3343445
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHH
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLF 112 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l 112 (197)
.++.+++++.|...+|..|.= ||.+-.+-...+
T Consensus 352 ~~~~~~lv~~~~d~~i~~l~r-gGHD~~~i~~A~ 384 (896)
T PRK13012 352 DPELAALVAHLSDEDIDRLKR-GGHDPRKVYAAY 384 (896)
T ss_pred cHHHHHHhhcccHHhhhhhcC-CCCCHHHHHHHH
Confidence 678999999999999998877 998755443333
No 175
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=56.94 E-value=1.1e+02 Score=25.05 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCCcEEEEecCCCc
Q psy5987 83 LKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 83 ~~~~~~l~~~~I~~LiviGG~gs 105 (197)
+++.+.+.+.++|++++.+.+..
T Consensus 54 ~~~~~~l~~~~~dgiii~~~~~~ 76 (275)
T cd06295 54 DWLARYLASGRADGVILIGQHDQ 76 (275)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCC
Confidence 34556666788999999876544
No 176
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=56.59 E-value=93 Score=24.22 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
+...++.+.+...++++++..+.+....
T Consensus 45 ~~~~~~~~~~~~~~~d~ii~~~~~~~~~ 72 (269)
T cd01391 45 ERALEALRDLIQQGVDGIIGPPSSSSAL 72 (269)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCHHHH
Confidence 3456677777778999998877765443
No 177
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=56.04 E-value=27 Score=30.23 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=43.4
Q ss_pred cChhHHHHHHHHHHHhCCc---EEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCC
Q psy5987 77 REKAGRLKAAKNLIDRGIT---NLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDF 153 (197)
Q Consensus 77 ~~~~~~~~~~~~l~~~~I~---~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi 153 (197)
++-+.++++.+.|.+++++ .+|.+||--...-+--.+-.| .-+++.+.||-|+-
T Consensus 10 Ksl~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y--------------------~RGi~~i~vPTTLL--- 66 (260)
T PF01761_consen 10 KSLETVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTY--------------------MRGIPFIQVPTTLL--- 66 (260)
T ss_dssp SSHHHHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHB--------------------TT--EEEEEE-SHH---
T ss_pred CCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHH--------------------ccCCceEeccccHH---
Confidence 4567889999999999995 999999976666555444322 13799999999963
Q ss_pred CCCCCCCCchhHHH
Q psy5987 154 CGTDMTIGTDSALH 167 (197)
Q Consensus 154 ~g~d~s~GfdTA~~ 167 (197)
.-+|.|+|--||+|
T Consensus 67 a~vDssiGgK~~vN 80 (260)
T PF01761_consen 67 AQVDSSIGGKTGVN 80 (260)
T ss_dssp HHHTTTSSSEEEEE
T ss_pred HHHhcccCCCeeee
Confidence 23455666555444
No 178
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=56.04 E-value=1.3e+02 Score=25.56 Aligned_cols=24 Identities=13% Similarity=0.515 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
+...+..+.|..+++|++|+.+-.
T Consensus 102 ~~~~~~~~~l~~~~vdGiIi~~~~ 125 (329)
T TIGR01481 102 EKEVQVLNTLLSKQVDGIIFMGGT 125 (329)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCC
Confidence 344566778888999999998754
No 179
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=54.69 E-value=1.2e+02 Score=24.74 Aligned_cols=33 Identities=6% Similarity=-0.019 Sum_probs=27.0
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEE
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVF 33 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~ 33 (197)
+||++.-.-..|=.+.++.++.+.+...|+++.
T Consensus 1 ~igvi~p~~~~~~~~~~~~g~~~~a~~~g~~~~ 33 (268)
T cd06270 1 TIGLVVSDLDGPFFGPLLSGVESVARKAGKHLI 33 (268)
T ss_pred CEEEEEccccCcchHHHHHHHHHHHHHCCCEEE
Confidence 467888777788889999999998888888765
No 180
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=54.36 E-value=1.2e+02 Score=24.64 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=46.4
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
.||++...-+.|=.+.++.++-+.+...|++++-+ . +.. +++
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--------~-------------------------~~~-----~~~ 42 (269)
T cd06275 1 TIGMLVTTSTNPFFAEVVRGVEQYCYRQGYNLILC--------N-------------------------TEG-----DPE 42 (269)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHHHHcCCEEEEE--------e-------------------------CCC-----ChH
Confidence 36788877677778888888888887777766411 0 000 123
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
...+..+.+...++|++++.+.+..
T Consensus 43 ~~~~~i~~l~~~~vdgiii~~~~~~ 67 (269)
T cd06275 43 RQRSYLRMLAQKRVDGLLVMCSEYD 67 (269)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCC
Confidence 4556777888899999999987654
No 181
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=54.28 E-value=23 Score=34.17 Aligned_cols=134 Identities=19% Similarity=0.195 Sum_probs=82.5
Q ss_pred HHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCcee-----cccCCCCccChhHHHHHHHHHHHh
Q psy5987 18 VRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVI-----GSARCSDFREKAGRLKAAKNLIDR 92 (197)
Q Consensus 18 i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~L-----gssR~~~~~~~~~~~~~~~~l~~~ 92 (197)
++.+++.-.++|..-+-++-|..= +++++....+-++.+.|||++ -..+-.++ .+.++++.+.|++|
T Consensus 297 ~~d~ieeQAeqGVDf~TIHaGv~~------~~v~~~~~R~tgIVSRGGSima~Wml~h~kENpl--Ye~FD~ileI~k~Y 368 (607)
T PRK09284 297 FRDTLIEQAEQGVDYFTIHAGVLL------RYVPLTAKRVTGIVSRGGSIMAKWCLAHHKENFL--YTHFEEICEIMAAY 368 (607)
T ss_pred HHHHHHHHHHhCCCEEEEChhhHH------HHHHHHhCcccCcccCCHHHHHHHHHHcCCcCcH--HHHHHHHHHHHHHh
Confidence 344455555788888888888631 455666667888899999976 33344444 46789999999999
Q ss_pred CCcEEEEecC---CCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEE-----Eee-----------eecccCC
Q psy5987 93 GITNLVVIGG---DGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIA-----GLV-----------GSIDNDF 153 (197)
Q Consensus 93 ~I~~LiviGG---~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vv-----giP-----------kTIDNDi 153 (197)
++. +-+|- -|++..|+--+| ++||+--|.+++.+.+. +++|+ +|| |.+=++-
T Consensus 369 DVt--lSLGDGLRPG~iaDA~D~AQ-----~~EL~tLGELt~rA~e~--gVQVMIEGPGHVPl~~I~~N~~lqk~lc~~A 439 (607)
T PRK09284 369 DVS--FSLGDGLRPGSIADANDEAQ-----FAELETLGELTKIAWEH--DVQVMIEGPGHVPMHLIKENMDKQLEHCHEA 439 (607)
T ss_pred Cee--eeccCCcCCCccccCCcHHH-----HHHHHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHHHhhCCC
Confidence 875 44543 245554444443 23444335555666664 55554 255 2222333
Q ss_pred C-------CCCCCCCchhHHHH
Q psy5987 154 C-------GTDMTIGTDSALHR 168 (197)
Q Consensus 154 ~-------g~d~s~GfdTA~~~ 168 (197)
| -||..+|||=-...
T Consensus 440 PfYvLGPLvTDIApGYDHItsA 461 (607)
T PRK09284 440 PFYTLGPLTTDIAPGYDHITSA 461 (607)
T ss_pred CeeecCCcccccCCCchHHHHH
Confidence 3 28999999954433
No 182
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=53.85 E-value=99 Score=23.71 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=25.9
Q ss_pred HHHHHhCCcEE-EEecCCCcHHH--HHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEe
Q psy5987 87 KNLIDRGITNL-VVIGGDGSLTG--ANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGL 145 (197)
Q Consensus 87 ~~l~~~~I~~L-iviGG~gs~~~--a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgi 145 (197)
+.+..++-+.+ +.+|.|+.... ...+.+. +++++ +..++.+++.+|+.+
T Consensus 44 ~~~~~~~p~~vvi~~G~ND~~~~~~~~~~~~~----~~~lv------~~i~~~~~~~~iil~ 95 (171)
T cd04502 44 RLVLPYQPRRVVLYAGDNDLASGRTPEEVLRD----FRELV------NRIRAKLPDTPIAII 95 (171)
T ss_pred hhhccCCCCEEEEEEecCcccCCCCHHHHHHH----HHHHH------HHHHHHCCCCcEEEE
Confidence 33344455544 45677775433 3444444 44444 345666667777665
No 183
>PLN02444 HMP-P synthase
Probab=53.79 E-value=26 Score=33.97 Aligned_cols=134 Identities=20% Similarity=0.198 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCcee-----cccCCCCccChhHHHHHHHHHHHh
Q psy5987 18 VRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVI-----GSARCSDFREKAGRLKAAKNLIDR 92 (197)
Q Consensus 18 i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~L-----gssR~~~~~~~~~~~~~~~~l~~~ 92 (197)
++..++.-.++|..-+-++-|..= ++.++....+-++.+.|||++ -..+-+|+ .+.++++.+.|++|
T Consensus 302 ~~d~ieeQaeqGVDfmTIH~Gv~~------~~v~~~~~R~tgIVSRGGSi~a~Wml~~~kENPl--Ye~FD~ileI~k~Y 373 (642)
T PLN02444 302 FRETLIEQAEQGVDYFTIHAGVLL------RYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFA--YEHWDDILDICNQY 373 (642)
T ss_pred HHHHHHHHHHhCCCEEEEChhhHH------HHHHHHhCcccCceeCCcHHHHHHHHHcCCcCch--HHHHHHHHHHHHHh
Confidence 344455555778888888888631 345555567788899999976 33444554 46789999999999
Q ss_pred CCcEEEEecC---CCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEE-----Eee-----------eecccCC
Q psy5987 93 GITNLVVIGG---DGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIA-----GLV-----------GSIDNDF 153 (197)
Q Consensus 93 ~I~~LiviGG---~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vv-----giP-----------kTIDNDi 153 (197)
++. +-+|- -|++..|+--+| ++||+--|.+++.+.++ +++|+ +|| |.+=++-
T Consensus 374 DVt--lSLGDGLRPG~iaDA~D~AQ-----~~EL~tLGELtkrA~e~--gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~A 444 (642)
T PLN02444 374 DIA--LSIGDGLRPGSIYDANDTAQ-----FAELLTQGELTRRAWEK--DVQVMNEGPGHVPLHKIPENMQKQLEWCNEA 444 (642)
T ss_pred Cee--eeccCCcCCCccccCCcHHH-----HHHHHHHHHHHHHHHHc--CCeEEEECCCcCcHHHHHHHHHHHHHhhCCC
Confidence 875 44543 244444444443 23444445555666664 55554 255 2223444
Q ss_pred C-------CCCCCCCchhHHHH
Q psy5987 154 C-------GTDMTIGTDSALHR 168 (197)
Q Consensus 154 ~-------g~d~s~GfdTA~~~ 168 (197)
| -||..+|||=-...
T Consensus 445 PfYvLGPLvTDIAPGYDHItsA 466 (642)
T PLN02444 445 PFYTLGPLTTDIAPGYDHITSA 466 (642)
T ss_pred CceecCCcccccCCCchHHHHH
Confidence 3 28999999954333
No 184
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=53.18 E-value=50 Score=30.88 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcHHHHH
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSLTGAN 110 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~ 110 (197)
..-+++++.|++-++|+.|+...-||-..+-
T Consensus 323 ~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~ 353 (431)
T TIGR01918 323 QFAKEFVVELKQGGVDAVILTSTUGTCTRCG 353 (431)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcchhHH
Confidence 3457899999999999999998888755443
No 185
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=51.85 E-value=1.3e+02 Score=24.41 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=41.6
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
+|++...-..|-.+..+.++.+.+...|+++.-.. +.. +++.
T Consensus 2 igvi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---------------------------------~~~-----~~~~ 43 (264)
T cd06274 2 IGLIIPDLENRSFARIAKRLEALARERGYQLLIAC---------------------------------SDD-----DPET 43 (264)
T ss_pred EEEEeccccCchHHHHHHHHHHHHHHCCCEEEEEe---------------------------------CCC-----CHHH
Confidence 56666665566777777777777766676654320 000 1234
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~g 104 (197)
..++.+.+...++|++++.+.+.
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~ 66 (264)
T cd06274 44 ERETVETLIARQVDALIVAGSLP 66 (264)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCC
Confidence 45677778888999998887653
No 186
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=51.70 E-value=24 Score=32.80 Aligned_cols=133 Identities=15% Similarity=0.203 Sum_probs=74.8
Q ss_pred HHHHHHHcCCEEEEEcCcchhhccCCCCeEECC-hhhhhhhhhhcCcee-----cccCCCCccChhHHHHHHHHHHHhCC
Q psy5987 21 CVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEAN-WSSVSSIIHKGGTVI-----GSARCSDFREKAGRLKAAKNLIDRGI 94 (197)
Q Consensus 21 ~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~-~~~v~~~~~~gGs~L-----gssR~~~~~~~~~~~~~~~~l~~~~I 94 (197)
+++.-.+.|..-+-++-|+.= . .+..+. ...+-++.+.|||++ -..+-+|+ .+.+.++.+.|++|++
T Consensus 145 ~ie~qa~dGVDfmTiH~Gi~~---~--~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPl--ye~fD~lLeI~~~yDV 217 (423)
T TIGR00190 145 AIEKQAKDGVDFMTIHAGVLL---E--YVERLKRSGRITGIVSRGGAILAAWMLHHHKENPL--YKNFDYILEIAKEYDV 217 (423)
T ss_pred HHHHHHHhCCCEEEEccchhH---H--HHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCch--HHHHHHHHHHHHHhCe
Confidence 344444556666666655431 1 111111 113455677888855 45566666 4778999999999987
Q ss_pred cEEEEecC---CCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEE-----Eee-----------eecccCCC-
Q psy5987 95 TNLVVIGG---DGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIA-----GLV-----------GSIDNDFC- 154 (197)
Q Consensus 95 ~~LiviGG---~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vv-----giP-----------kTIDNDi~- 154 (197)
. +-+|- -|++..|.--+| ++||+--|.+.+.++++ +++|+ +|| |.+-++-|
T Consensus 218 t--lSLGDglRPG~i~DA~D~aQ-----i~El~~lgeL~~rA~e~--gVQvMVEGPGHvPl~~I~~nv~lqK~lc~~APf 288 (423)
T TIGR00190 218 T--LSLGDGLRPGCIADATDRAQ-----ISELITLGELVERAREA--DVQCMVEGPGHVPLDQIEANVRLQKELCDEAPF 288 (423)
T ss_pred e--eeccCCcCCCccccCCcHHH-----HHHHHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHHHhhCCCCe
Confidence 5 44442 133333333332 23444444455666665 45554 255 56666765
Q ss_pred ------CCCCCCCchhHHHHH
Q psy5987 155 ------GTDMTIGTDSALHRI 169 (197)
Q Consensus 155 ------g~d~s~GfdTA~~~~ 169 (197)
-||..+|||=-...+
T Consensus 289 YvLGPLvTDiApGYDHItsAI 309 (423)
T TIGR00190 289 YVLGPLVTDIAPGYDHITSAI 309 (423)
T ss_pred eecCCcccccCCCchHHHHHH
Confidence 299999999544443
No 187
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=51.30 E-value=1.3e+02 Score=24.50 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
+...+..+.+.+ ++|++++...+.
T Consensus 46 ~~~~~~i~~~~~-~vdgiii~~~~~ 69 (275)
T cd06307 46 AALAAALLRLGA-RSDGVALVAPDH 69 (275)
T ss_pred HHHHHHHHHHHh-cCCEEEEeCCCc
Confidence 334566677778 999999987663
No 188
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=51.25 E-value=28 Score=23.69 Aligned_cols=37 Identities=8% Similarity=0.180 Sum_probs=25.8
Q ss_pred CCceEEEeeeecccCCCCCCCCCCchhHHHHHHHHHHHHHHhhccC
Q psy5987 138 CHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSH 183 (197)
Q Consensus 138 ~~i~vvgiPkTIDNDi~g~d~s~GfdTA~~~~~~~i~~l~~~a~S~ 183 (197)
.++..|.||.+.|-|.. +-.....+-++.+...|.+.
T Consensus 22 ~GIRFVpiPv~~dee~~---------~L~s~~~~kLe~ma~~aE~~ 58 (61)
T PF07131_consen 22 IGIRFVPIPVVTDEEFH---------TLSSQLSQKLERMAAEAEKA 58 (61)
T ss_pred cCceeeccccccHHHHH---------HHHHHHHHHHHHHHHHHHHh
Confidence 48999999999887753 34445566666666666553
No 189
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=51.17 E-value=1.7e+02 Score=25.70 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=22.9
Q ss_pred ChhHHHHHHHHHHHh--CCcEEEEecCCCcHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDR--GITNLVVIGGDGSLTGANLF 112 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~--~I~~LiviGG~gs~~~a~~l 112 (197)
+++++.++++.+++. +.|++||.-|.+||.....+
T Consensus 55 t~~~~~~la~~i~~~~~~~~GvVVtHGTDTme~tA~~ 91 (313)
T PF00710_consen 55 TPEDWLELARAIQAALDDYDGVVVTHGTDTMEETAFF 91 (313)
T ss_dssp -HHHHHHHHHHHHHHHTTCSEEEEE--STTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCeEEEecCchHHHHHHHH
Confidence 456666655555544 69999999999999875443
No 190
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=51.03 E-value=62 Score=30.27 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a 109 (197)
.-++|++.|++-++|+.|+.-.-||-..+
T Consensus 324 ~g~eIa~~Lk~dgVDAvILtstCgtCtrc 352 (431)
T TIGR01917 324 FAKEFSKELLAAGVDAVILTSTUGTCTRC 352 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchhH
Confidence 45779999999999999999777775544
No 191
>KOG1838|consensus
Probab=50.13 E-value=1e+02 Score=28.62 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhHHHHHHHHHHHhCCc
Q psy5987 16 AAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGIT 95 (197)
Q Consensus 16 a~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I~ 95 (197)
.=|++++..|...|++++.+. . +..+|+.|-|.|.-..-..++++.+++-+++.-=+
T Consensus 141 ~YVr~lv~~a~~~G~r~VVfN--------~---------------RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~ 197 (409)
T KOG1838|consen 141 SYVRHLVHEAQRKGYRVVVFN--------H---------------RGLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYPQ 197 (409)
T ss_pred HHHHHHHHHHHhCCcEEEEEC--------C---------------CCCCCCccCCCceeecCCHHHHHHHHHHHHHhCCC
Confidence 568999999999999998772 2 23678888888887777788999999888887666
Q ss_pred E-EEEecCCCcHHHHHHHHHH
Q psy5987 96 N-LVVIGGDGSLTGANLFRQE 115 (197)
Q Consensus 96 ~-LiviGG~gs~~~a~~l~~~ 115 (197)
+ |+.+|= -.+|+.|..|
T Consensus 198 a~l~avG~---S~Gg~iL~nY 215 (409)
T KOG1838|consen 198 APLFAVGF---SMGGNILTNY 215 (409)
T ss_pred CceEEEEe---cchHHHHHHH
Confidence 6 777762 2234445444
No 192
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=49.78 E-value=1.1e+02 Score=23.31 Aligned_cols=87 Identities=14% Similarity=0.089 Sum_probs=53.5
Q ss_pred HHHHHHcCCEEEEEcCcchhhccC-C-------CCeEECChhhhhhhhhhcCceecccCCCCccChhHHHHHHHHHHHhC
Q psy5987 22 VRMGIYLGCKVFFIKEGYQGMVDG-G-------DNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRG 93 (197)
Q Consensus 22 v~~~~~~g~~v~g~~~G~~GL~~~-~-------~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~ 93 (197)
++...++..-++++=.|..-|.+. . .++--++++....+...|-.++-.. .+ +.-+.+++++.+.+++
T Consensus 9 ~~~l~~~~~~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p-~k---D~TD~e~Al~~~~~~~ 84 (123)
T PF04263_consen 9 FKNLWKNADFIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFP-EK---DYTDLEKALEYAIEQG 84 (123)
T ss_dssp HHHHHHTTSEEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE--ST---TS-HHHHHHHHHHHTT
T ss_pred HHhhhhcCCEEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccceeccc-cc---ccCHHHHHHHHHHHCC
Confidence 344445555677888888777665 2 1344445554555556643444333 33 4568999999999999
Q ss_pred CcEEEEecCCCcHHHHHHHH
Q psy5987 94 ITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 94 I~~LiviGG~gs~~~a~~l~ 113 (197)
.+-++++|+.|. +.=+.|+
T Consensus 85 ~~~i~v~Ga~Gg-R~DH~la 103 (123)
T PF04263_consen 85 PDEIIVLGALGG-RFDHTLA 103 (123)
T ss_dssp TSEEEEES-SSS-SHHHHHH
T ss_pred CCEEEEEecCCC-cHHHHHH
Confidence 999999999996 3334444
No 193
>PRK05670 anthranilate synthase component II; Provisional
Probab=49.74 E-value=37 Score=27.30 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=16.8
Q ss_pred HHhCCcEEEEecCCCcHHHHH
Q psy5987 90 IDRGITNLVVIGGDGSLTGAN 110 (197)
Q Consensus 90 ~~~~I~~LiviGG~gs~~~a~ 110 (197)
+.++.|+||+.||.|+...+.
T Consensus 40 ~~~~~dglIlsgGpg~~~d~~ 60 (189)
T PRK05670 40 EALNPDAIVLSPGPGTPAEAG 60 (189)
T ss_pred HhCCCCEEEEcCCCCChHHcc
Confidence 456689999999999986654
No 194
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=49.50 E-value=1.7e+02 Score=25.11 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
+...+..+.+...++|++|+.+..
T Consensus 102 ~~~~~~i~~l~~~~vdGiIi~~~~ 125 (346)
T PRK10401 102 EKERHAIEVLIRQRCNALIVHSKA 125 (346)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCC
Confidence 344567788888999999999753
No 195
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=48.72 E-value=1.7e+02 Score=24.84 Aligned_cols=25 Identities=40% Similarity=0.671 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
+...++++.+...++|++++.+-+.
T Consensus 41 ~~q~~~i~~l~~~~vDgIIi~~~~~ 65 (302)
T TIGR02634 41 AKQISQIENLIARGVDVLVIIPQNG 65 (302)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 4456788889999999999987553
No 196
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.63 E-value=1.4e+02 Score=24.08 Aligned_cols=65 Identities=9% Similarity=0.019 Sum_probs=42.2
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
.||+++..-.-|-...++.++-+.+...|++++-. .+.. +++
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~i~----------------------------------~~~~----~~~ 42 (267)
T cd06322 1 VIGASLLTQQHPFYIELANAMKEEAKKQKVNLIVS----------------------------------IANQ----DLN 42 (267)
T ss_pred CeeEeecCcccHHHHHHHHHHHHHHHhcCCEEEEe----------------------------------cCCC----CHH
Confidence 36677766666777777777777777666655321 1110 123
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
...+..+.+...++|++++.+-+
T Consensus 43 ~~~~~~~~~~~~~vdgiii~~~~ 65 (267)
T cd06322 43 KQLSDVEDFITKKVDAIVLSPVD 65 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCC
Confidence 44566777888899999998754
No 197
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=47.94 E-value=34 Score=27.31 Aligned_cols=43 Identities=14% Similarity=-0.025 Sum_probs=31.9
Q ss_pred EEEeCCCC-hhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccC
Q psy5987 3 AQVNKKSS-STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDG 45 (197)
Q Consensus 3 aIl~sGG~-apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~ 45 (197)
||+.+||+ .|---.....+++.+...+.-|+|+-.|..-|..-
T Consensus 42 giil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~ 85 (178)
T cd01744 42 GIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQLLALA 85 (178)
T ss_pred EEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHHHHHHHH
Confidence 78999997 33322445567777777788999999999987754
No 198
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=47.68 E-value=1.5e+02 Score=23.96 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
...+..+.+...++|++++++.+.+
T Consensus 43 ~~~~~~~~l~~~~vdgiii~~~~~~ 67 (268)
T cd06273 43 REYAQARKLLERGVDGLALIGLDHS 67 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 3445667778889999999876544
No 199
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.77 E-value=1.5e+02 Score=23.89 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=41.1
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
+||+...-..|=....+.++.+.+...|+++.-+. +.. +++.
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~----------------------------------~~~----~~~~ 43 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAAAGYDVVLSE----------------------------------SGR----RTSP 43 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHHcCCeEEEec----------------------------------CCC----chHH
Confidence 56666555556677777777777766666554221 010 1233
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..+..+.+...++|++++...+..
T Consensus 44 ~~~~i~~l~~~~~dgiii~~~~~~ 67 (270)
T cd06296 44 ERQWVERLSARRTDGVILVTPELT 67 (270)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCC
Confidence 456777788889999999876643
No 200
>PLN02204 diacylglycerol kinase
Probab=46.36 E-value=36 Score=33.20 Aligned_cols=69 Identities=19% Similarity=0.374 Sum_probs=41.0
Q ss_pred CEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCc---eecccCCCCccChhHHHHHHHHH---HHhCCcEEEEecCC
Q psy5987 30 CKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGT---VIGSARCSDFREKAGRLKAAKNL---IDRGITNLVVIGGD 103 (197)
Q Consensus 30 ~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs---~LgssR~~~~~~~~~~~~~~~~l---~~~~I~~LiviGG~ 103 (197)
.+++.|.|=+.| ++ .-. -.|+.+..+....|. ++-|.|.. +...+++.+ ...+.|++|++|||
T Consensus 160 k~llVivNP~sG--kg--~~~-~~~~~V~p~f~~a~i~~~v~~T~~ag------hA~d~~~~~~~~~l~~~D~VVaVGGD 228 (601)
T PLN02204 160 KNLLVFVHPLSG--KG--SGS-RTWETVSPIFIRAKVKTKVIVTERAG------HAFDVMASISNKELKSYDGVIAVGGD 228 (601)
T ss_pred ceEEEEECCCCC--Cc--chH-HHHHHHHHHHHHcCCeEEEEEecCcc------hHHHHHHHHhhhhccCCCEEEEEcCc
Confidence 477778777766 22 211 236677776666664 33444432 222333322 34578999999999
Q ss_pred CcHHHH
Q psy5987 104 GSLTGA 109 (197)
Q Consensus 104 gs~~~a 109 (197)
|++..+
T Consensus 229 Gt~nEV 234 (601)
T PLN02204 229 GFFNEI 234 (601)
T ss_pred cHHHHH
Confidence 998754
No 201
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.11 E-value=1.6e+02 Score=23.89 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=43.3
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...=..|-.+.++.++.+.+...|+++.-+.. .. +++.
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy~v~~~~~----------------------------------~~----~~~~ 43 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEADARGLSLVLCAT----------------------------------RN----RPER 43 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEeC----------------------------------CC----CHHH
Confidence 677776555677778888888888888877653311 11 1234
Q ss_pred HHHHHHHHHHhCCcEEEEecC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGG 102 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG 102 (197)
..+..+.+.+.++|++|+.+-
T Consensus 44 ~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 44 ELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred HHHHHHHHHHCCCCEEEEeCC
Confidence 456778888999999999863
No 202
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=45.67 E-value=1e+02 Score=25.71 Aligned_cols=61 Identities=26% Similarity=0.320 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTD 157 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d 157 (197)
++.+++++.+.+.+-|++ ++||..-...-+ + ++++ +. .++..+++|+.-|.+.+.=.++-|
T Consensus 11 e~~~~ia~~v~~~gtDaI-~VGGS~gvt~~~-~--------~~~v------~~-ik~~~~lPvilfp~~~~~i~~~aD 71 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAI-MVGGSLGIVESN-L--------DQTV------KK-IKKITNLPVILFPGNVNGLSRYAD 71 (205)
T ss_pred HHHHHHHHHHHhcCCCEE-EEcCcCCCCHHH-H--------HHHH------HH-HHhhcCCCEEEECCCccccCcCCC
Confidence 567778889999999976 667664232221 1 1222 12 233468999999988775544433
No 203
>PLN02714 thiamin pyrophosphokinase
Probab=45.61 E-value=1.4e+02 Score=25.07 Aligned_cols=101 Identities=13% Similarity=-0.005 Sum_probs=59.5
Q ss_pred EEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhcc---------------CC-------CCeEECChhhhhhh
Q psy5987 3 AQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVD---------------GG-------DNIVEANWSSVSSI 60 (197)
Q Consensus 3 aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~---------------~~-------~~~~~l~~~~v~~~ 60 (197)
||+..++|-|- ....+ -++..-++++=.|..=|.+ .. .++--++++....+
T Consensus 1 a~~~~n~~i~~---~~~~~----~~~a~~~i~aDgGa~~l~~~~~~~~~~~~~~~~~~gi~Pd~iiGDfDSi~~e~~~~~ 73 (229)
T PLN02714 1 ALVVLNQRLPR---FTPLL----WEHAKLRVCADGGANRLYDEMPLLFPDEDPLAVRNRYKPDVIKGDMDSIRPEVLDFY 73 (229)
T ss_pred CEEEcCCccHH---HHHHH----HhcCcEEEEecCcHHHHHhhhhhccccccccccccCcCCCEEEeeccCCCHHHHHHH
Confidence 57788888762 22222 2333456688888888876 10 13334445555555
Q ss_pred hhhcCceecccCCCCccChhHHHHHHHHHHHh------CCcEEEEecCCCcHHHHHHHHH
Q psy5987 61 IHKGGTVIGSARCSDFREKAGRLKAAKNLIDR------GITNLVVIGGDGSLTGANLFRQ 114 (197)
Q Consensus 61 ~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~------~I~~LiviGG~gs~~~a~~l~~ 114 (197)
... |..+ .+.++.++.-+.+++++.+.++ +.+.++++|+.|. +-=+.|+.
T Consensus 74 ~~~-~~~i--~~~~~eKD~TD~e~Al~~~~~~~~~~~~~~~~I~v~Ga~GG-RlDH~laN 129 (229)
T PLN02714 74 SNL-GTKI--VDESHDQDTTDLHKCIAYIRDSTPDLDKSNLCILVLGALGG-RFDHEAGN 129 (229)
T ss_pred HHC-CCEE--EECCCCcccCHHHHHHHHHHHhccccccCCceEEEEcccCC-chHHHHHH
Confidence 444 4322 3455555666788888877643 4578999999987 33344443
No 204
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=45.47 E-value=27 Score=33.28 Aligned_cols=97 Identities=18% Similarity=0.209 Sum_probs=52.6
Q ss_pred CeEECChhhhhhh--hhhcCceecccCCCCccChhHHHHH-HHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHH
Q psy5987 48 NIVEANWSSVSSI--IHKGGTVIGSARCSDFREKAGRLKA-AKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLL 124 (197)
Q Consensus 48 ~~~~l~~~~v~~~--~~~gGs~LgssR~~~~~~~~~~~~~-~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~ 124 (197)
.+.+|.+.+.+-. ...+|..+++.=.-...+.++++.. .+.+.++ +|++++-||.|.--..-++.-.
T Consensus 296 KYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~-~dgIlVPGGFG~RG~eGkI~Ai--------- 365 (533)
T COG0504 296 KYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKL-VDGILVPGGFGYRGVEGKIAAI--------- 365 (533)
T ss_pred CCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhc-CCEEEeCCCCCcCchHHHHHHH---------
Confidence 5666665544432 3444554443221111123333221 1233333 9999999999966555555321
Q ss_pred hcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHHHHHHHHHHH
Q psy5987 125 KDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDA 175 (197)
Q Consensus 125 ~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~~~~~~~i~~ 175 (197)
+++|++ +++..| .|+|++.|+=.+|.-+--
T Consensus 366 ------~yAREn--~iP~lG-------------IClGmQ~aviE~ARnv~G 395 (533)
T COG0504 366 ------RYAREN--NIPFLG-------------ICLGMQLAVIEFARNVLG 395 (533)
T ss_pred ------HHHHhc--CCCEEE-------------EchhHHHHHHHHHHHhcC
Confidence 455653 344444 499999998766664433
No 205
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=45.32 E-value=86 Score=28.15 Aligned_cols=89 Identities=15% Similarity=0.001 Sum_probs=47.3
Q ss_pred EEeCCCChhh-HhHHHHHHHHHHHHcC--CEEEEEcCcchhhccCC-CCeEECChhhhhhhhhhcCceecccCCCCccCh
Q psy5987 4 QVNKKSSSTG-MNAAVRACVRMGIYLG--CKVFFIKEGYQGMVDGG-DNIVEANWSSVSSIIHKGGTVIGSARCSDFREK 79 (197)
Q Consensus 4 Il~sGG~apG-~Na~i~~~v~~~~~~g--~~v~g~~~G~~GL~~~~-~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~ 79 (197)
|+.+||-+.| +..+ ++++.++.++ .+.+|+-++ .+-+.. ....+++.-.+.++.. .|..- ++-.
T Consensus 8 i~i~aGgtsGhi~pa--al~~~l~~~~~~~~~~g~gg~--~m~~~g~~~~~~~~~l~v~G~~~----~l~~~----~~~~ 75 (385)
T TIGR00215 8 IALVAGEASGDILGA--GLRQQLKEHYPNARFIGVAGP--RMAAEGCEVLYSMEELSVMGLRE----VLGRL----GRLL 75 (385)
T ss_pred EEEEeCCccHHHHHH--HHHHHHHhcCCCcEEEEEccH--HHHhCcCccccChHHhhhccHHH----HHHHH----HHHH
Confidence 4556666666 7766 7777776555 466775322 222210 0112222222223221 12110 0011
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
..+.++.+.+++.+.|.+|.+|+-+
T Consensus 76 ~~~~~~~~~l~~~kPd~vi~~g~~~ 100 (385)
T TIGR00215 76 KIRKEVVQLAKQAKPDLLVGIDAPD 100 (385)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 2456788999999999999999855
No 206
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=44.80 E-value=1.7e+02 Score=26.67 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=77.2
Q ss_pred EEEEEcCcchhhccC----------CCCeEECChhhhhhhhhhcC-----ceecccCCCCccChhHHHHHHHHHHHhCCc
Q psy5987 31 KVFFIKEGYQGMVDG----------GDNIVEANWSSVSSIIHKGG-----TVIGSARCSDFREKAGRLKAAKNLIDRGIT 95 (197)
Q Consensus 31 ~v~g~~~G~~GL~~~----------~~~~~~l~~~~v~~~~~~gG-----s~LgssR~~~~~~~~~~~~~~~~l~~~~I~ 95 (197)
-.+||++|..|=++- .+.|.-++++-...+..+.| -+|.-.+. |-.+.+...++.+.|++.++.
T Consensus 180 ~PVgfKN~t~g~i~~aidAi~aa~~~H~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~-PNY~~~~v~~a~~~l~~~~l~ 258 (348)
T PRK12756 180 CPVGFKNGTDGNTRIAIDAIRAARASHMFLSPDKDGQMTIYQTSGNPYGHIIMRGGKK-PNYHAEDIAAACDTLREFDLP 258 (348)
T ss_pred CceEecCCCCCCHHHHHHHHHHHhCCCeeEeeCCCCcEEEEEcCCCCCeEEEeeCCCC-CCCCHHHHHHHHHHHHHCCCC
Confidence 678899888875532 25677777664444434433 14432332 444688899999999999998
Q ss_pred EEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEee---------eeccc--C-CC---CCCCCC
Q psy5987 96 NLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLV---------GSIDN--D-FC---GTDMTI 160 (197)
Q Consensus 96 ~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiP---------kTIDN--D-i~---g~d~s~ 160 (197)
-=++|-=+ .....+=++..+.++++.++ +.. ..+..|.||= -.+.+ . .+ -||.|+
T Consensus 259 ~~imVDcS--H~NS~K~~~~Q~~V~~~v~~-------qi~-~g~~~I~GvMiES~L~~G~Q~~~~~~~l~yG~SITD~Ci 328 (348)
T PRK12756 259 EHLVVDFS--HGNCQKQHRRQLDVAEDICQ-------QIR-NGSTAIAGIMAESFLREGTQKIVAGQPLTYGQSITDPCL 328 (348)
T ss_pred CcEEEECC--CcccCCCHHHHHHHHHHHHH-------HHH-cCCCeEEEEEEeecccccCCCCCCCCCCcCCCccccccc
Confidence 86666322 22222222222334444431 122 2244566641 11111 1 23 499999
Q ss_pred CchhHHHHHHHHHHHHH
Q psy5987 161 GTDSALHRIIEAIDAIV 177 (197)
Q Consensus 161 GfdTA~~~~~~~i~~l~ 177 (197)
|+++....+.+.-+.+.
T Consensus 329 ~W~~T~~ll~~la~a~~ 345 (348)
T PRK12756 329 GWEDTERLLELLAAAVD 345 (348)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999888776665553
No 207
>PLN02335 anthranilate synthase
Probab=44.75 E-value=51 Score=27.57 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=17.4
Q ss_pred HHHhCCcEEEEecCCCcHHHHH
Q psy5987 89 LIDRGITNLVVIGGDGSLTGAN 110 (197)
Q Consensus 89 l~~~~I~~LiviGG~gs~~~a~ 110 (197)
+..++.|++|+.||-++.....
T Consensus 58 ~~~~~~d~iVisgGPg~p~d~~ 79 (222)
T PLN02335 58 LKRKNPRGVLISPGPGTPQDSG 79 (222)
T ss_pred HHhcCCCEEEEcCCCCChhhcc
Confidence 3456889999999999887543
No 208
>KOG4435|consensus
Probab=44.15 E-value=42 Score=31.46 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHH
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a 109 (197)
..+.+..++.+.-.. |.++|.|||||....
T Consensus 103 ~gqak~l~e~~~t~~-Dii~VaGGDGT~~eV 132 (535)
T KOG4435|consen 103 QGQAKALAEAVDTQE-DIIYVAGGDGTIGEV 132 (535)
T ss_pred HHHHHHHHHHhccCC-CeEEEecCCCcHHHh
Confidence 455667777777666 999999999999764
No 209
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.94 E-value=1.7e+02 Score=23.62 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=43.1
Q ss_pred CeEEEeCCC-ChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccCh
Q psy5987 1 MTAQVNKKS-SSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREK 79 (197)
Q Consensus 1 ~~aIl~sGG-~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~ 79 (197)
.||++..-- ..|-...++.++.+.+...|+++.-+ .++. ++
T Consensus 1 ~i~vi~p~~~~~~~~~~~~~g~~~~~~~~g~~~~~~----------------------------------~~~~----~~ 42 (275)
T cd06317 1 TIGYTQNNVGSHSYQTTYNKAFQAAAEEDGVEVIVL----------------------------------DANG----DV 42 (275)
T ss_pred CeEEEecccCCCHHHHHHHHHHHHHHHhcCCEEEEE----------------------------------cCCc----CH
Confidence 367777653 67888888888888887766555321 1111 12
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
+...+..+.+...++|++++.+.+.
T Consensus 43 ~~~~~~~~~l~~~~vdgiii~~~~~ 67 (275)
T cd06317 43 ARQAAQVEDLIAQKVDGIILWPTDG 67 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCc
Confidence 3344566777788999999987654
No 210
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=43.80 E-value=63 Score=28.36 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHH
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a 109 (197)
..++++.|.+++++.||+-.-.-|-..-
T Consensus 56 ~~~i~~~l~~~~ik~lVIACNTASa~al 83 (269)
T COG0796 56 TLEIVDFLLERGIKALVIACNTASAVAL 83 (269)
T ss_pred HHHHHHHHHHcCCCEEEEecchHHHHHH
Confidence 3568899999999999998765444433
No 211
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=43.52 E-value=1.7e+02 Score=26.75 Aligned_cols=136 Identities=18% Similarity=0.141 Sum_probs=76.9
Q ss_pred EEEEEcCcchhhccC----------CCCeEECChhhhhhhhhhcC-----ceecccCCCCccChhHHHHHHHHHHHhCCc
Q psy5987 31 KVFFIKEGYQGMVDG----------GDNIVEANWSSVSSIIHKGG-----TVIGSARCSDFREKAGRLKAAKNLIDRGIT 95 (197)
Q Consensus 31 ~v~g~~~G~~GL~~~----------~~~~~~l~~~~v~~~~~~gG-----s~LgssR~~~~~~~~~~~~~~~~l~~~~I~ 95 (197)
..+||++|..|=++- .+.|.-++++-...+..+.| -+|.-.+. |-.+.++..++.+.|++.++.
T Consensus 181 ~PVgfKngt~g~i~~AidAi~aa~~pH~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~~-PNY~~~~v~~a~~~l~~~~l~ 259 (356)
T PRK12822 181 CPVGFKNGTDGNIRIAIDAILAARSPHLVTVPGLTGCISTLLSDGNPHGHIILRGGRE-PNYGLSDVTKASKLLHDEGLN 259 (356)
T ss_pred CceEecCCCCCCHHHHHHHHHHHcCCCeEEecCCCCcEEEEEcCCCCCceEEEeCCCC-CCCCHHHHHHHHHHHHHCCCC
Confidence 788899998875533 25677777664444444444 14432333 334678999999999999997
Q ss_pred EEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEee-------ee--cc-cC-CC---CCCCCCC
Q psy5987 96 NLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLV-------GS--ID-ND-FC---GTDMTIG 161 (197)
Q Consensus 96 ~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiP-------kT--ID-ND-i~---g~d~s~G 161 (197)
-=++|-= |....++=++..+.++++.++ +.. ..+..|+||= .. ++ ++ .+ -||.|+|
T Consensus 260 ~~vmVDc--SH~NS~K~~~~Q~~V~~~v~~-------q~~-~g~~~I~GvMiES~L~~G~Q~~~~~~l~yG~SITD~Ci~ 329 (356)
T PRK12822 260 HRLIIDC--SHGNSQKVAKNQISVARELCD-------QLK-EGEGAIAGVMVESFLQGGSQKADSAPLEYGQSVTDECLS 329 (356)
T ss_pred CcEEEEC--CCccCCCCHHHHHHHHHHHHH-------HHH-CCCCeEEEEEEeecccccCCCCCCCCCcCCCccchhcCC
Confidence 7555531 111222222222334444431 112 2244566641 00 11 12 23 4999999
Q ss_pred chhHHHHHHHHHHHHH
Q psy5987 162 TDSALHRIIEAIDAIV 177 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~ 177 (197)
+++....+.+.-+.+.
T Consensus 330 W~~T~~ll~~la~~~~ 345 (356)
T PRK12822 330 WQDTEQLLNTLAEAVE 345 (356)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999888777766654
No 212
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=43.34 E-value=2.1e+02 Score=24.36 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
+......+.|...++|++|+.+.+.
T Consensus 107 ~~~~~~~~~l~~~~vdgiIi~~~~~ 131 (342)
T PRK10014 107 EQLAQRFSTLLNQGVDGVVIAGAAG 131 (342)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 4456777888888999999988764
No 213
>KOG3857|consensus
Probab=43.15 E-value=55 Score=30.21 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=30.7
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.....++++..++.+.|.+|-|||--++.+|...+
T Consensus 112 tv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaa 147 (465)
T KOG3857|consen 112 TVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAA 147 (465)
T ss_pred chhhHHHHHHHHHhcccceEEEEcCcchhhhHHHHH
Confidence 345678899999999999999999998888876654
No 214
>PRK05637 anthranilate synthase component II; Provisional
Probab=42.27 E-value=77 Score=26.28 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=19.6
Q ss_pred HHHHhCCcEEEEecCCCcHHHHHHH
Q psy5987 88 NLIDRGITNLVVIGGDGSLTGANLF 112 (197)
Q Consensus 88 ~l~~~~I~~LiviGG~gs~~~a~~l 112 (197)
.+.+.+.+++|+-||.|+...+...
T Consensus 39 ~l~~~~~~~iIlsgGPg~~~d~~~~ 63 (208)
T PRK05637 39 EILAANPDLICLSPGPGHPRDAGNM 63 (208)
T ss_pred HHHhcCCCEEEEeCCCCCHHHhhHH
Confidence 3446788999999999999877543
No 215
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=42.16 E-value=36 Score=24.03 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=27.8
Q ss_pred hcCceecccCCCCccChhHHHHHHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 63 KGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 63 ~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
.++.+|-+. ... -+.+.+.|+++++..++++||.++...
T Consensus 49 ~~~PIll~~-~~l------~~~~~~~l~~~~~~~v~iiGg~~~is~ 87 (92)
T PF04122_consen 49 NNAPILLVN-NSL------PSSVKAFLKSLNIKKVYIIGGEGAISD 87 (92)
T ss_pred cCCeEEEEC-CCC------CHHHHHHHHHcCCCEEEEECCCCccCH
Confidence 455667666 221 145667778889999999999988754
No 216
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=42.06 E-value=38 Score=31.57 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=73.3
Q ss_pred HHHHHHHcCCEEEEEcCcchhhccCCCCeEECCh-hhhhhhhhhcCcee-----cccCCCCccChhHHHHHHHHHHHhCC
Q psy5987 21 CVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANW-SSVSSIIHKGGTVI-----GSARCSDFREKAGRLKAAKNLIDRGI 94 (197)
Q Consensus 21 ~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~-~~v~~~~~~gGs~L-----gssR~~~~~~~~~~~~~~~~l~~~~I 94 (197)
+++.-.+.|..-+-++-|+.= . .+..+.. ..+-++.+.|||++ -..+-+|+ .+.+.++.+.+++|++
T Consensus 148 ~ie~qa~~GVDfmTiHcGi~~---~--~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPl--ye~fD~lLeI~~~yDV 220 (431)
T PRK13352 148 VIEKQAKDGVDFMTIHCGVTR---E--TLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPL--YEHFDYLLEILKEYDV 220 (431)
T ss_pred HHHHHHHhCCCEEEEccchhH---H--HHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCch--HHHHHHHHHHHHHhCe
Confidence 334434556666666555321 1 1111111 23555677888855 45566666 4779999999999987
Q ss_pred cEEEEecC---CCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEE-----Eee-----------eecccCCC-
Q psy5987 95 TNLVVIGG---DGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIA-----GLV-----------GSIDNDFC- 154 (197)
Q Consensus 95 ~~LiviGG---~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vv-----giP-----------kTIDNDi~- 154 (197)
. +-+|- -|++..|.--+| ++||+--|.+.+.++++ +++|+ +|| |.+-++-|
T Consensus 221 t--lSLGDglRPG~i~Da~D~aQ-----i~El~~lgeL~~RA~e~--gVQvMVEGPGHvPl~~I~~nv~l~K~lc~~APf 291 (431)
T PRK13352 221 T--LSLGDGLRPGCIADATDRAQ-----IQELITLGELVKRAREA--GVQVMVEGPGHVPLDQIEANVKLQKRLCHGAPF 291 (431)
T ss_pred e--eeccCCcCCCccccCCcHHH-----HHHHHHHHHHHHHHHHc--CCeEEEECCCCCCHHHHHHHHHHHHHhhCCCCc
Confidence 5 44442 133333332222 23444334444666664 45554 255 55566665
Q ss_pred ------CCCCCCCchhHHHHH
Q psy5987 155 ------GTDMTIGTDSALHRI 169 (197)
Q Consensus 155 ------g~d~s~GfdTA~~~~ 169 (197)
-||..+|||=....+
T Consensus 292 YvLGPLvTDiApGYDHIt~AI 312 (431)
T PRK13352 292 YVLGPLVTDIAPGYDHITSAI 312 (431)
T ss_pred eecCccccccCCCchHHHHHH
Confidence 299999999544433
No 217
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.04 E-value=91 Score=27.40 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
.++-++.+.|+.++++.++++|+..
T Consensus 55 G~vg~lik~l~~~~v~~vVl~G~v~ 79 (279)
T COG3494 55 GEVGKLIKLLKTEGVDRVVLAGGVE 79 (279)
T ss_pred HHHHHHHHHHHHcCCcEEEEecccc
Confidence 4577889999999999999999987
No 218
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=41.96 E-value=60 Score=24.54 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCcEEEEecCCCcHHHH
Q psy5987 84 KAAKNLIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 84 ~~~~~l~~~~I~~LiviGG~gs~~~a 109 (197)
.+.+...++++|.++++.||+-+..+
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~ 115 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPL 115 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHH
Confidence 34566666699999999999988765
No 219
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.95 E-value=1.9e+02 Score=23.46 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=24.1
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEE
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVF 33 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~ 33 (197)
+||++...-+.|-....+.++.+.+.+.|++++
T Consensus 1 ~Ig~i~p~~~~~~~~~~~~~i~~~~~~~g~~~~ 33 (263)
T cd06280 1 TVGLIVADIRNPFFTAVSRAVEDAAYRAGLRVI 33 (263)
T ss_pred CEEEEecccccccHHHHHHHHHHHHHHCCCEEE
Confidence 467777666667777788888888777777664
No 220
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.07 E-value=1.9e+02 Score=23.39 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~g 104 (197)
...+.+.+.+.++|++++.+.+.
T Consensus 47 ~~~~~~~l~~~~vdgiii~~~~~ 69 (268)
T cd06277 47 EFELPSFLEDGKVDGIILLGGIS 69 (268)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCC
Confidence 44566778889999999988553
No 221
>PRK09526 lacI lac repressor; Reviewed
Probab=40.82 E-value=2.3e+02 Score=24.11 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhCCcEEEEecC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGG 102 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG 102 (197)
+...+..+.|...++|++++.+.
T Consensus 107 ~~~~~~l~~l~~~~vdGiii~~~ 129 (342)
T PRK09526 107 EACQAAVNELLAQRVSGVIINVP 129 (342)
T ss_pred HHHHHHHHHHHhcCCCEEEEecC
Confidence 34456778899999999999744
No 222
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=40.65 E-value=1.9e+02 Score=23.19 Aligned_cols=21 Identities=0% Similarity=-0.075 Sum_probs=14.4
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q psy5987 84 KAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 84 ~~~~~l~~~~I~~LiviGG~g 104 (197)
.+.+.+.+.++|++|+.+.+.
T Consensus 50 ~~~~~~~~~~vdgiii~~~~~ 70 (268)
T cd06271 50 VYRRLVESGLVDGVIISRTRP 70 (268)
T ss_pred HHHHHHHcCCCCEEEEecCCC
Confidence 344445667899999887654
No 223
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=40.61 E-value=1.9e+02 Score=23.06 Aligned_cols=65 Identities=14% Similarity=0.223 Sum_probs=43.3
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
.||++......|..+.++.++-+.+...|+++.-+. +.. +++
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~g~~~~~~~----------------------------------~~~----~~~ 42 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKELGVELIVLD----------------------------------AQN----DVS 42 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHhcCceEEEEC----------------------------------CCC----CHH
Confidence 367888766788888888888888877665443210 010 123
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
...+..+.+...++|++|+.+.+
T Consensus 43 ~~~~~~~~l~~~~vdgvi~~~~~ 65 (267)
T cd01536 43 KQIQQIEDLIAQGVDGIIISPVD 65 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCC
Confidence 34466677777799999988765
No 224
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.60 E-value=2.8e+02 Score=25.14 Aligned_cols=100 Identities=10% Similarity=-0.017 Sum_probs=59.3
Q ss_pred EEEeCCCChhhHh-HHHHHHHHHHHHc-CCEE---------EEEcCcchhhccCCCCe-EE----CCh-hhhhhhhhhcC
Q psy5987 3 AQVNKKSSSTGMN-AAVRACVRMGIYL-GCKV---------FFIKEGYQGMVDGGDNI-VE----ANW-SSVSSIIHKGG 65 (197)
Q Consensus 3 aIl~sGG~apG~N-a~i~~~v~~~~~~-g~~v---------~g~~~G~~GL~~~~~~~-~~----l~~-~~v~~~~~~gG 65 (197)
+|+++||==|=+| ..+..+++.+... |..+ .|+..+++-|.+. +. +. |.. ++-.+-.
T Consensus 163 ~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~--dl~v~LaiSLha~d~e~r~~---- 236 (356)
T PRK14462 163 NIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEM--NLGVQLAISLHAVDDELRSE---- 236 (356)
T ss_pred CeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhc--CCCeEEEEECCCCCHHHHHH----
Confidence 6899988888888 5677777777653 6532 6777777777765 22 11 221 1111111
Q ss_pred ceecccCCCCccChhHHHHHHHHHHHh--------CCcEEEEecCCCcHHHHHHHHHH
Q psy5987 66 TVIGSARCSDFREKAGRLKAAKNLIDR--------GITNLVVIGGDGSLTGANLFRQE 115 (197)
Q Consensus 66 s~LgssR~~~~~~~~~~~~~~~~l~~~--------~I~~LiviGG~gs~~~a~~l~~~ 115 (197)
+.+.++..+ ++.+.++++++ =|.+.++=|=|++...|..|++.
T Consensus 237 -l~pv~~~~~------l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~l 287 (356)
T PRK14462 237 -LMPINKAYN------IESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKL 287 (356)
T ss_pred -hCCCCccCC------HHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHH
Confidence 123333222 23344433322 36788888889999999999864
No 225
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=40.49 E-value=24 Score=35.95 Aligned_cols=98 Identities=13% Similarity=0.071 Sum_probs=67.8
Q ss_pred CCCChhhHhHHHHHHHHHHHHcCCEEEEEcC--cchhhccCC------CCeEECChhhhhhhhhhcCceecccCCCCccC
Q psy5987 7 KKSSSTGMNAAVRACVRMGIYLGCKVFFIKE--GYQGMVDGG------DNIVEANWSSVSSIIHKGGTVIGSARCSDFRE 78 (197)
Q Consensus 7 sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~--G~~GL~~~~------~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~ 78 (197)
.-|++.+....+..+-......||+|+=+.- .|+-|+..+ ..+.+....+.+.+...+|..+ |...|..
T Consensus 267 lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~---R~~ffg~ 343 (891)
T PRK09405 267 LDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYV---REHFFGK 343 (891)
T ss_pred cCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHH---HHHhcCC
Confidence 4678887444456666666677999987752 345444331 1455666678888999999977 4343445
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
.++.+++++.+...+|..| =.||.+-.+-
T Consensus 344 ~~~~~~lv~~~sD~~i~~l-~~gGHD~~~i 372 (891)
T PRK09405 344 YPETKALVADMSDDDIWAL-NRGGHDPRKV 372 (891)
T ss_pred CHHHHHHHhhCCHHHHHHh-ccCCCCHHHH
Confidence 6788999999999999988 8888874443
No 226
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=39.78 E-value=87 Score=29.59 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcHHHHH
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSLTGAN 110 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~ 110 (197)
.+++.++..|-+.++|.++||||--|-.+.+
T Consensus 349 qeRQdA~~~L~~~~vDlmiVVGG~NSSNT~~ 379 (460)
T PLN02821 349 QERQDAMYKLVEEKLDLMLVVGGWNSSNTSH 379 (460)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCccHHH
Confidence 3466677777666899999999999988854
No 227
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.00 E-value=2.2e+02 Score=23.47 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=24.2
Q ss_pred CeEEEeCC-----CChhhHhHHHHHHHHHHHHcCCEEEEE
Q psy5987 1 MTAQVNKK-----SSSTGMNAAVRACVRMGIYLGCKVFFI 35 (197)
Q Consensus 1 ~~aIl~sG-----G~apG~Na~i~~~v~~~~~~g~~v~g~ 35 (197)
+||++.-- =..|-.+.++.++-+.+...|+++.-+
T Consensus 1 ~igvi~p~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 40 (283)
T cd06279 1 AVGVVLTDSLSYAFSDPVASQFLAGVAEVLDAAGVNLLLL 40 (283)
T ss_pred CEEEEeCCcccccccCccHHHHHHHHHHHHHHCCCEEEEe
Confidence 35666643 345777778888888888888877644
No 228
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=38.90 E-value=1.7e+02 Score=22.21 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=25.5
Q ss_pred HhCCcEEEE-ecCCCcHHH--HHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEe
Q psy5987 91 DRGITNLVV-IGGDGSLTG--ANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGL 145 (197)
Q Consensus 91 ~~~I~~Liv-iGG~gs~~~--a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgi 145 (197)
..+-|.+++ +|+|+.... +..+.+. +++++ ...++++++.+|+.+
T Consensus 46 ~~~pd~vvl~~G~ND~~~~~~~~~~~~~----l~~li------~~~~~~~~~~~vi~~ 93 (169)
T cd01828 46 ALQPKAIFIMIGINDLAQGTSDEDIVAN----YRTIL------EKLRKHFPNIKIVVQ 93 (169)
T ss_pred ccCCCEEEEEeeccCCCCCCCHHHHHHH----HHHHH------HHHHHHCCCCeEEEE
Confidence 455676554 677887643 4444444 44444 344555566777665
No 229
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=38.89 E-value=1.1e+02 Score=27.11 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHHHH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANLF 112 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l 112 (197)
+++.+++.|-+ .+|.+++|||..|-.+.+++
T Consensus 199 ~RQ~a~~~La~-~vD~miVVGg~~SsNT~kL~ 229 (298)
T PRK01045 199 NRQEAVKELAP-QADLVIVVGSKNSSNSNRLR 229 (298)
T ss_pred HHHHHHHHHHh-hCCEEEEECCCCCccHHHHH
Confidence 45566666654 79999999999999885433
No 230
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=38.62 E-value=57 Score=26.83 Aligned_cols=45 Identities=20% Similarity=0.373 Sum_probs=32.3
Q ss_pred cCceecccCCCCccChhHHHHHHHHHHHh-CCcEEEEecCCCc-HHHHHHH
Q psy5987 64 GGTVIGSARCSDFREKAGRLKAAKNLIDR-GITNLVVIGGDGS-LTGANLF 112 (197)
Q Consensus 64 gGs~LgssR~~~~~~~~~~~~~~~~l~~~-~I~~LiviGG~gs-~~~a~~l 112 (197)
|-++.|+..+..+ ..++++.|+... +|+.|+++|-+-. ..+.+.|
T Consensus 41 gaAI~G~~~TENl----GIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl 87 (176)
T PF04208_consen 41 GAAIAGPCKTENL----GIEKVIANVISNPNIRFLILCGSEVKGHLTGQSL 87 (176)
T ss_pred Cceeeeccccccc----CHHHHHHHHhcCCCceEEEEecCccCCCcchHHH
Confidence 3468899988764 688888887555 9999999997753 4444433
No 231
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=38.29 E-value=88 Score=24.87 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=13.5
Q ss_pred HHhCCcEEEEecCCCcHHH
Q psy5987 90 IDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 90 ~~~~I~~LiviGG~gs~~~ 108 (197)
...+.|++|+-||.++...
T Consensus 36 ~~~~~dgiil~GG~~~~~~ 54 (178)
T cd01744 36 LKLDPDGIFLSNGPGDPAL 54 (178)
T ss_pred hhcCCCEEEECCCCCChhH
Confidence 3457888888888776544
No 232
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=38.24 E-value=2.1e+02 Score=23.01 Aligned_cols=66 Identities=5% Similarity=-0.059 Sum_probs=40.5
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...=..|=...+..++-+.+...|+++.-+. +... .++.
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---------------------------------~~~~----~~~~ 44 (270)
T cd01545 2 IGLLYDNPSPGYVSEIQLGALDACRDTGYQLVIEP---------------------------------CDSG----SPDL 44 (270)
T ss_pred EEEEEcCCCcccHHHHHHHHHHHHHhCCCeEEEEe---------------------------------CCCC----chHH
Confidence 56666655556666777777777766665543220 0000 1123
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~g 104 (197)
..++.+.+..+++|++|+...+.
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~~ 67 (270)
T cd01545 45 AERVRALLQRSRVDGVILTPPLS 67 (270)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCC
Confidence 45667778888999999988764
No 233
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=38.16 E-value=30 Score=25.78 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
..+.+.+++.+++++|| |+++|-...+..
T Consensus 48 ~~d~~~l~~~a~~~~id-lvvvGPE~pL~~ 76 (100)
T PF02844_consen 48 ITDPEELADFAKENKID-LVVVGPEAPLVA 76 (100)
T ss_dssp TT-HHHHHHHHHHTTES-EEEESSHHHHHT
T ss_pred CCCHHHHHHHHHHcCCC-EEEECChHHHHH
Confidence 46788999999999999 888888766543
No 234
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=37.88 E-value=2.7e+02 Score=24.15 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
+......+.+...++|++|+...+
T Consensus 91 ~~q~~~i~~l~~~~vdgIIl~~~~ 114 (343)
T PRK10936 91 AKQQQQLEQCVAWGADAILLGAVT 114 (343)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCC
Confidence 445567888889999999998755
No 235
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=37.49 E-value=69 Score=25.84 Aligned_cols=22 Identities=14% Similarity=-0.023 Sum_probs=17.5
Q ss_pred HHHHhCCcEEEEecCCCcHHHH
Q psy5987 88 NLIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 88 ~l~~~~I~~LiviGG~gs~~~a 109 (197)
.+.+++.|++|+-||.|+...+
T Consensus 38 ~~~~~~~d~iilsgGpg~p~~~ 59 (188)
T TIGR00566 38 EIEALLPLLIVISPGPCTPNEA 59 (188)
T ss_pred HHHhcCCCEEEEcCCCCChhhc
Confidence 3456789999999999988653
No 236
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=37.36 E-value=51 Score=20.37 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=26.0
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
......++.+.+++++++.+.++..++.+.+
T Consensus 14 ~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G 44 (57)
T PF00571_consen 14 PDDSLEEALEIMRKNGISRLPVVDEDGKLVG 44 (57)
T ss_dssp TTSBHHHHHHHHHHHTSSEEEEESTTSBEEE
T ss_pred CcCcHHHHHHHHHHcCCcEEEEEecCCEEEE
Confidence 3456889999999999999999988876644
No 237
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=37.34 E-value=2.5e+02 Score=23.56 Aligned_cols=65 Identities=22% Similarity=0.383 Sum_probs=44.7
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++-+.+...|+++.-+ ..+.. +++.
T Consensus 2 I~vi~~~~~~~f~~~i~~gi~~~a~~~g~~v~~~---------------------------------~~~~~----d~~~ 44 (298)
T cd06302 2 IAFVPKVTGIPYFNRMEEGAKEAAKELGVDAIYV---------------------------------GPTTA----DAAG 44 (298)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHHhCCeEEEE---------------------------------CCCCC----CHHH
Confidence 6777766667888888888888888878766422 00110 1234
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~ 103 (197)
..+..+.+...++|++|+.+.+
T Consensus 45 ~~~~i~~~~~~~~DgiIi~~~~ 66 (298)
T cd06302 45 QVQIIEDLIAQGVDAIAVVPND 66 (298)
T ss_pred HHHHHHHHHhcCCCEEEEecCC
Confidence 4566777788899999998655
No 238
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=37.13 E-value=1.6e+02 Score=24.56 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a 109 (197)
-+..+.+.|.+++++.+|++-|-|....+
T Consensus 87 ~l~di~~sl~~~Gf~~ivivngHgGN~~~ 115 (237)
T PF02633_consen 87 LLRDILRSLARHGFRRIVIVNGHGGNIAA 115 (237)
T ss_dssp HHHHHHHHHHHHT--EEEEEESSTTHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHhHHHH
Confidence 35678999999999999999999986544
No 239
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=37.10 E-value=24 Score=29.35 Aligned_cols=29 Identities=31% Similarity=0.269 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHH
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLF 112 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l 112 (197)
...+++.|.+++|| +++||+.|+..|..-
T Consensus 8 ~p~~~~vf~~~gid--~cc~g~~~l~~a~~~ 36 (216)
T TIGR03652 8 IPRAARIFRKYGID--FCCGGNVSLAEACKE 36 (216)
T ss_pred CccHHHHHHHcCCC--ccCCCcchHHHHHHH
Confidence 34678899999999 899999999887654
No 240
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.52 E-value=2.5e+02 Score=23.31 Aligned_cols=65 Identities=25% Similarity=0.177 Sum_probs=40.9
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-.+.++.++.+.+...|+++.-+. .+.. +++.
T Consensus 2 i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---------------------------------~~~~----~~~~ 44 (294)
T cd06316 2 AAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVVATT---------------------------------DAQF----DPAK 44 (294)
T ss_pred eEEEecCCCChHHHHHHHHHHHHHHHcCCEEEEec---------------------------------CCCC----CHHH
Confidence 56666655667777788888777777776664210 0000 1233
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~ 103 (197)
..+..+.+...++|++++..-+
T Consensus 45 ~~~~l~~~~~~~~dgiii~~~~ 66 (294)
T cd06316 45 QVADIETTISQKPDIIISIPVD 66 (294)
T ss_pred HHHHHHHHHHhCCCEEEEcCCC
Confidence 4456666777899999987644
No 241
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=36.48 E-value=23 Score=29.87 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHH
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGAN 110 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~ 110 (197)
..++++.|++++|| +++||+-|+..|-
T Consensus 15 ~p~~~~vf~~~~id--fCcgG~~~l~ea~ 41 (220)
T PRK10992 15 IPRATALFREYDLD--FCCGGKQTLARAA 41 (220)
T ss_pred CccHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 34678899999999 7899999998874
No 242
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=35.80 E-value=1.9e+02 Score=23.94 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 84 KAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 84 ~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
...+.|++++|+.||+.|=....=
T Consensus 141 ~L~~~Lr~~gI~~lvi~Gv~T~~C 164 (226)
T TIGR03614 141 PLDSMLRARGIRNLVFTGIATNVC 164 (226)
T ss_pred CHHHHHHHCCCCEEEEeccCccHh
Confidence 366778999999999988775543
No 243
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=35.77 E-value=1.1e+02 Score=21.84 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
.+.+.+..+++++| ++++|..+.
T Consensus 74 ~~~I~~~~~~~~~d-llviG~~~~ 96 (124)
T cd01987 74 AEAIVEFAREHNVT-QIVVGKSRR 96 (124)
T ss_pred HHHHHHHHHHcCCC-EEEeCCCCC
Confidence 46788888899998 667777754
No 244
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.74 E-value=1.2e+02 Score=24.11 Aligned_cols=82 Identities=18% Similarity=0.213 Sum_probs=42.4
Q ss_pred HHcCCEEEEEcCcchhhccCC--CCeEECChh--h-hhhh---hhhcCc--eecccCC-----------------CCccC
Q psy5987 26 IYLGCKVFFIKEGYQGMVDGG--DNIVEANWS--S-VSSI---IHKGGT--VIGSARC-----------------SDFRE 78 (197)
Q Consensus 26 ~~~g~~v~g~~~G~~GL~~~~--~~~~~l~~~--~-v~~~---~~~gGs--~LgssR~-----------------~~~~~ 78 (197)
...|.+|+--++|..-++... ..++++... | +..+ ...+.. +++-... .++.+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~ 110 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYDS 110 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEESS
T ss_pred HhcCCeEEEECCHHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEECC
Confidence 467889998888888888762 124444422 1 2222 211111 1111111 12335
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHH
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a 109 (197)
+++.+.+++.+++.+++. ++||..+.+.|
T Consensus 111 ~~e~~~~i~~~~~~G~~v--iVGg~~~~~~A 139 (176)
T PF06506_consen 111 EEEIEAAIKQAKAEGVDV--IVGGGVVCRLA 139 (176)
T ss_dssp HHHHHHHHHHHHHTT--E--EEESHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcE--EECCHHHHHHH
Confidence 778888999999999884 57777554443
No 245
>PRK06186 hypothetical protein; Validated
Probab=35.72 E-value=83 Score=26.87 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=32.4
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHHHHHHHH
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEA 172 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~~~~~~~ 172 (197)
+.|++++.||.|.--..-++.- + +++|+ |++|---.|+|++.|+=.++.-
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~a---------i------~~Are---------------~~iP~LGIClGmQ~avIe~arn 102 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTA---------I------RFARE---------------NGIPFLGTCGGFQHALLEYARN 102 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHH---------H------HHHHH---------------cCCCeEeechhhHHHHHHHHhh
Confidence 7899999999997655444431 1 34454 3444444599999876555543
No 246
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=35.56 E-value=64 Score=23.30 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQ 114 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~ 114 (197)
++..+.......++.++|+.||..--.....+++
T Consensus 49 dR~di~~~a~~~~i~~iIltg~~~~~~~v~~la~ 82 (105)
T PF07085_consen 49 DREDIQLAAIEAGIACIILTGGLEPSEEVLELAK 82 (105)
T ss_dssp T-HHHHHHHCCTTECEEEEETT----HHHHHHHH
T ss_pred CcHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHH
Confidence 3456667777788999999998876666555543
No 247
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.47 E-value=2.4e+02 Score=22.79 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=25.8
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEE
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVF 33 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~ 33 (197)
.||++...=+.|=.+..+.++.+.+...|++++
T Consensus 1 ~igvi~p~~~~~~~~~~~~gi~~~~~~~~~~~~ 33 (265)
T cd06285 1 TIGVLVPRLTDTVMATMYEGIEEAAAERGYSTF 33 (265)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEE
Confidence 367777765678888889999998888887654
No 248
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=35.45 E-value=25 Score=29.77 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHHH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANL 111 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~ 111 (197)
++.++.+.+++++|| +++||+-++..|.+
T Consensus 14 ~iP~A~~iFr~y~iD--FCCGG~~~L~~Aa~ 42 (221)
T COG2846 14 SIPRAAEIFRSYDID--FCCGGKVTLERAAA 42 (221)
T ss_pred hCccHHHHHHHcCCc--eecCChHHHHHHHH
Confidence 356789999999999 68999999988764
No 249
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=35.40 E-value=2.5e+02 Score=23.11 Aligned_cols=69 Identities=6% Similarity=-0.156 Sum_probs=40.6
Q ss_pred eEEEeCCC-ChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 2 TAQVNKKS-SSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 2 ~aIl~sGG-~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
||+++..- ..|-....+.++.+.+...|+++.-. ........+.+
T Consensus 2 Igvi~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~----------------------------------~~~~~~~~~~~ 47 (280)
T cd06303 2 IAVIYPGQQISDYWVRNIASFTARLEELNIPYELT----------------------------------QFSSRPGIDHR 47 (280)
T ss_pred eeEEecCccHHHHHHHHHHHHHHHHHHcCCcEEEE----------------------------------EeccCcccCHH
Confidence 56666543 25666777777777776666554311 00111001123
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
...+..+.+...++|++|+.....
T Consensus 48 ~~~~~i~~l~~~~vDgiIv~~~~~ 71 (280)
T cd06303 48 LQSQQLNEALQSKPDYLIFTLDSL 71 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCch
Confidence 445677788889999999987543
No 250
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=35.34 E-value=2.5e+02 Score=22.94 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=40.6
Q ss_pred eEEEeCC--CChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccCh
Q psy5987 2 TAQVNKK--SSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREK 79 (197)
Q Consensus 2 ~aIl~sG--G~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~ 79 (197)
+|+++.. -.-|-...++.++-+.+...|++++-. .+. ++
T Consensus 2 Igvi~~~~~~~~~f~~~l~~gi~~~~~~~gy~~~~~---------------------------------~~~------~~ 42 (260)
T cd06304 2 VALVYDGGGGDKSFNQSAYEGLEKAEKELGVEVKYV---------------------------------ESV------ED 42 (260)
T ss_pred EEEEecCCCCcchHHHHHHHHHHHHHHhcCceEEEE---------------------------------ecC------CH
Confidence 5677764 236777777777777777766655321 000 12
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
+...+..+.|...++|++|+.+.+
T Consensus 43 ~~~~~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 43 ADYEPNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcc
Confidence 334467777888999999998654
No 251
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=35.19 E-value=1.3e+02 Score=23.36 Aligned_cols=47 Identities=13% Similarity=0.091 Sum_probs=29.4
Q ss_pred hhhhhcCceecccCCCCccChhHHHHHHHHHHHhCC-cEEEEecCCCcH
Q psy5987 59 SIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGI-TNLVVIGGDGSL 106 (197)
Q Consensus 59 ~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I-~~LiviGG~gs~ 106 (197)
......--++|-|--. ..+.+..++..+.|++.++ +..+++||.-..
T Consensus 47 aa~~~~adiVglS~l~-~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi 94 (134)
T TIGR01501 47 AAIETKADAILVSSLY-GHGEIDCKGLRQKCDEAGLEGILLYVGGNLVV 94 (134)
T ss_pred HHHHcCCCEEEEeccc-ccCHHHHHHHHHHHHHCCCCCCEEEecCCcCc
Confidence 3344434455543322 2245678899999999998 555779997543
No 252
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=35.13 E-value=2.6e+02 Score=23.07 Aligned_cols=62 Identities=19% Similarity=0.179 Sum_probs=44.9
Q ss_pred eEEEeCC---CChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccC
Q psy5987 2 TAQVNKK---SSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFRE 78 (197)
Q Consensus 2 ~aIl~sG---G~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~ 78 (197)
||++... -+-|-.+.++.++-+.+...|++++-.. +. +
T Consensus 2 I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy~~~i~~----------------------------------~~-----~ 42 (265)
T cd06354 2 VALVTDVGGLGDKSFNQSAWEGLERAAKELGIEYKYVE----------------------------------SK-----S 42 (265)
T ss_pred EEEEeCCCCcCchhHHHHHHHHHHHHHHHcCCeEEEEe----------------------------------cC-----C
Confidence 6778775 4678999999999999988887765330 00 0
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecC
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGG 102 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG 102 (197)
+++..+..+.|...++|++|+.+-
T Consensus 43 ~~~~~~~i~~l~~~~vdgiI~~~~ 66 (265)
T cd06354 43 DADYEPNLEQLADAGYDLIVGVGF 66 (265)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCc
Confidence 122345677889999999999864
No 253
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=35.12 E-value=1.3e+02 Score=26.45 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+++++++.|-+ .+|.++||||..|-.+- +|.
T Consensus 198 ~RQ~a~~~La~-~vD~miVIGg~~SsNT~-kL~ 228 (281)
T PF02401_consen 198 NRQEAARELAK-EVDAMIVIGGKNSSNTR-KLA 228 (281)
T ss_dssp HHHHHHHHHHC-CSSEEEEES-TT-HHHH-HHH
T ss_pred HHHHHHHHHHh-hCCEEEEecCCCCccHH-HHH
Confidence 45666677654 79999999999997774 454
No 254
>PF01995 DUF128: Domain of unknown function DUF128; InterPro: IPR002846 These archaebacterial proteins have no known function. The domain is found duplicated in some sequences.; PDB: 3NEK_B.
Probab=34.52 E-value=29 Score=29.82 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=28.3
Q ss_pred hhhhhhhc-CceecccCCCCccChhHHHHHHHHHHHhCCcEEEEecCC
Q psy5987 57 VSSIIHKG-GTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 57 v~~~~~~g-Gs~LgssR~~~~~~~~~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
|.....+| |.+|..=|.-|....++.+++.+.|++.++.+++-+|.-
T Consensus 137 V~~~i~~G~G~ilAn~ReiP~~a~e~~~~il~~l~~~g~~Gil~iG~p 184 (236)
T PF01995_consen 137 VLDVIETGEGKILANFREIPMSAREKAEEILEKLEKAGFSGILEIGEP 184 (236)
T ss_dssp -------SSSEEEEEEEEEETTTHHHHHHHHHHH---T-TTEEEE--T
T ss_pred ccccccCCCceEeeeeecCchhHHHHHHHHHHHhhhcccceeEEeCCC
Confidence 33333445 778888888777677888889999999999999999983
No 255
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=34.49 E-value=2e+02 Score=21.54 Aligned_cols=87 Identities=9% Similarity=0.149 Sum_probs=45.3
Q ss_pred HHHHHhCCcEEEE-ecCCCcHHH--HHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEee--eecccCCCCCCCCCC
Q psy5987 87 KNLIDRGITNLVV-IGGDGSLTG--ANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLV--GSIDNDFCGTDMTIG 161 (197)
Q Consensus 87 ~~l~~~~I~~Liv-iGG~gs~~~--a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiP--kTIDNDi~g~d~s~G 161 (197)
+.+.+++-|.+++ +|+|+.... .....+.+ ++++ +..++++++.+++.++ .+-+.+
T Consensus 34 ~~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~----~~~i------~~i~~~~p~~~ii~~~~~p~~~~~--------- 94 (157)
T cd01833 34 DWVLAAKPDVVLLHLGTNDLVLNRDPDTAPDRL----RALI------DQMRAANPDVKIIVATLIPTTDAS--------- 94 (157)
T ss_pred hccccCCCCEEEEeccCcccccCCCHHHHHHHH----HHHH------HHHHHhCCCeEEEEEeCCCCCCcc---------
Confidence 5556678877665 677777653 44444444 4444 3445666777776542 221111
Q ss_pred chhHHHHHHHHHHHHHHhhcc-CCcEEEEEec
Q psy5987 162 TDSALHRIIEAIDAIVSTAYS-HQRTFIMEVM 192 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S-~~rv~ivE~m 192 (197)
....++...+.+..+...... ...++++...
T Consensus 95 ~~~~~~~~n~~l~~~~~~~~~~~~~v~~vd~~ 126 (157)
T cd01833 95 GNARIAEYNAAIPGVVADLRTAGSPVVLVDMS 126 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 134455555555555433221 2467777654
No 256
>PRK05660 HemN family oxidoreductase; Provisional
Probab=34.39 E-value=42 Score=30.28 Aligned_cols=70 Identities=21% Similarity=0.386 Sum_probs=45.9
Q ss_pred hCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhh-----cCCceEEEeeeecccCC------CC-CCCC
Q psy5987 92 RGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREK-----YCHLHIAGLVGSIDNDF------CG-TDMT 159 (197)
Q Consensus 92 ~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~-----~~~i~vvgiPkTIDNDi------~g-~d~s 159 (197)
..++.+++-||.-|+-....|.+. ++. .++. ...+.+-.=|.|++.+. .| +-.|
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~l----l~~----------l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~ris 122 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRL----LDG----------VRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRIS 122 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHH----HHH----------HHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEE
Confidence 579999999999998766666542 222 2221 12455566688888765 23 4479
Q ss_pred CCchhHHHHHHHHHHH
Q psy5987 160 IGTDSALHRIIEAIDA 175 (197)
Q Consensus 160 ~GfdTA~~~~~~~i~~ 175 (197)
+|.+|.-..+.+.+++
T Consensus 123 iGvqS~~~~~L~~l~r 138 (378)
T PRK05660 123 IGVQSFSEEKLKRLGR 138 (378)
T ss_pred eccCcCCHHHHHHhCC
Confidence 9999988766655543
No 257
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=34.19 E-value=47 Score=26.87 Aligned_cols=42 Identities=12% Similarity=-0.050 Sum_probs=29.0
Q ss_pred EEEeCCCC-hhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccC
Q psy5987 3 AQVNKKSS-STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDG 45 (197)
Q Consensus 3 aIl~sGG~-apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~ 45 (197)
+|+.|||| .|.=-..-..+++.+ ..+.-|+|+-.|.+-|..-
T Consensus 46 ~iilsgGpg~p~~~~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~ 88 (188)
T TIGR00566 46 LIVISPGPCTPNEAGISLEAIRHF-AGKLPILGVCLGHQAMGQA 88 (188)
T ss_pred EEEEcCCCCChhhcchhHHHHHHh-ccCCCEEEECHHHHHHHHH
Confidence 68999999 663211124455555 4578999999999887754
No 258
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=34.13 E-value=2.9e+02 Score=28.70 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCcEEEE-ecCCCcHHHHHHHHH
Q psy5987 82 RLKAAKNLIDRGITNLVV-IGGDGSLTGANLFRQ 114 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~Liv-iGG~gs~~~a~~l~~ 114 (197)
.+.+.+.++++++|+++. +||...+..+..|++
T Consensus 71 ~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~ 104 (1068)
T PRK12815 71 VEFVKRIIAREKPDALLATLGGQTALNLAVKLHE 104 (1068)
T ss_pred HHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHh
Confidence 456667788999999885 578777777766653
No 259
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.10 E-value=2.7e+02 Score=23.02 Aligned_cols=87 Identities=14% Similarity=0.074 Sum_probs=49.3
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
++++|.|+-+.|+= +++++.+..+|++|+.... .. -..+.+..+....|..+. -.. +..++++
T Consensus 8 ~~lITGa~~~~GIG---~a~a~~l~~~G~~v~~~~~------~~------~~~~~~~~~~~~~~~~~~-~~~-Dv~~~~~ 70 (261)
T PRK08690 8 KILITGMISERSIA---YGIAKACREQGAELAFTYV------VD------KLEERVRKMAAELDSELV-FRC-DVASDDE 70 (261)
T ss_pred EEEEECCCCCCcHH---HHHHHHHHHCCCEEEEEcC------cH------HHHHHHHHHHhccCCceE-EEC-CCCCHHH
Confidence 45666653456766 5566666778999876421 01 112223333333333221 112 3346777
Q ss_pred HHHHHHHHHHh--CCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDR--GITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~--~I~~LiviGG~gs 105 (197)
.+++++.+.+. +||.||..-|...
T Consensus 71 v~~~~~~~~~~~g~iD~lVnnAG~~~ 96 (261)
T PRK08690 71 INQVFADLGKHWDGLDGLVHSIGFAP 96 (261)
T ss_pred HHHHHHHHHHHhCCCcEEEECCccCC
Confidence 88887776664 7999999988653
No 260
>CHL00101 trpG anthranilate synthase component 2
Probab=33.95 E-value=75 Score=25.63 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=17.1
Q ss_pred HHHhCCcEEEEecCCCcHHHH
Q psy5987 89 LIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 89 l~~~~I~~LiviGG~gs~~~a 109 (197)
+.+++.|++|+.||.++....
T Consensus 39 ~~~~~~dgiiisgGpg~~~~~ 59 (190)
T CHL00101 39 IKNLNIRHIIISPGPGHPRDS 59 (190)
T ss_pred HhhCCCCEEEECCCCCChHHC
Confidence 455789999999999988653
No 261
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=33.92 E-value=2.5e+02 Score=22.52 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
++...++++.|.+.+++++ +|+..+
T Consensus 52 ~~~~~~~~~~l~~~~v~~i--ig~~~~ 76 (298)
T cd06268 52 PEAAAAAARELVDDGVDAV--IGPLSS 76 (298)
T ss_pred HHHHHHHHHHHHhCCceEE--EcCCcc
Confidence 4455667777777788876 455443
No 262
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=33.67 E-value=1.3e+02 Score=26.40 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHHHH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANLF 112 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l 112 (197)
+++.+++.|. ...|.++++||-.|-.+.+++
T Consensus 198 ~RQ~a~~~La-~~vD~miVVGg~~SsNT~rL~ 228 (281)
T PRK12360 198 KRQESAKELS-KEVDVMIVIGGKHSSNTQKLV 228 (281)
T ss_pred hHHHHHHHHH-HhCCEEEEecCCCCccHHHHH
Confidence 4566677773 579999999999998885543
No 263
>PRK11096 ansB L-asparaginase II; Provisional
Probab=33.63 E-value=3.6e+02 Score=24.32 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=27.6
Q ss_pred ChhHHHHHHHHHHH--hCCcEEEEecCCCcHHHHHHH
Q psy5987 78 EKAGRLKAAKNLID--RGITNLVVIGGDGSLTGANLF 112 (197)
Q Consensus 78 ~~~~~~~~~~~l~~--~~I~~LiviGG~gs~~~a~~l 112 (197)
++++..++++.+++ .+.|++||.-|.+||.....+
T Consensus 83 t~~~~~~l~~~i~~~~~~~dGiVVtHGTDTme~tA~~ 119 (347)
T PRK11096 83 NDEVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYF 119 (347)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCchHHHHHHH
Confidence 46777777777766 579999999999999875543
No 264
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=33.51 E-value=44 Score=31.10 Aligned_cols=136 Identities=15% Similarity=0.205 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECC-hhhhhhhhhhcCcee-----cccCCCCccChhHHHHHHHHHHH
Q psy5987 18 VRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEAN-WSSVSSIIHKGGTVI-----GSARCSDFREKAGRLKAAKNLID 91 (197)
Q Consensus 18 i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~-~~~v~~~~~~gGs~L-----gssR~~~~~~~~~~~~~~~~l~~ 91 (197)
+..+++.-...|..-+.++-|..= . .+..+. ...+-++.+.|||+| -..+-+|+ .+.++++.+.+++
T Consensus 141 ~~~~ie~qa~~GVDfmtiH~git~---~--~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPl--y~~fD~lLeI~k~ 213 (420)
T PF01964_consen 141 FFDVIEKQAKDGVDFMTIHCGITR---E--TLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPL--YEHFDRLLEIAKE 213 (420)
T ss_dssp HHHHHHHHHHHT--EEEE-TT--G---G--GGGGGT--TSSS----HHHHHHHHHHHHHTS--HH--HHTHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCEEEEccchhH---H--HHHHHhhhccccCccccchHHHHHHHHhcCCcCcH--HHhHHHHHHHHHH
Confidence 445556556778888888877531 1 111222 134667788889865 34555555 3678999999999
Q ss_pred hCCcEEEEecCC---CcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEE-----Eee-----------eecccC
Q psy5987 92 RGITNLVVIGGD---GSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIA-----GLV-----------GSIDND 152 (197)
Q Consensus 92 ~~I~~LiviGG~---gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vv-----giP-----------kTIDND 152 (197)
|++. +-+|-- |++..|.-=+| ++||+--+.+.+.+++. +++|+ +|| |.+-++
T Consensus 214 yDVt--LSLGDglRPG~i~Da~D~aQ-----i~EL~~lgeL~~rA~e~--gVQvMVEGPGHVPl~~I~~nv~lqK~lc~~ 284 (420)
T PF01964_consen 214 YDVT--LSLGDGLRPGCIADATDRAQ-----IQELIILGELVKRAREA--GVQVMVEGPGHVPLNQIEANVKLQKRLCHG 284 (420)
T ss_dssp TT-E--EEE--TT--SSGGGTT-HHH-----HHHHHHHHHHHHHHHHT--T--EEEEE-SB--GGGHHHHHHHHHHHTTT
T ss_pred hCee--EecccccCCCCcCCCCcHHH-----HHHHHHHHHHHHHHHHC--CCeEEeeCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9875 455531 33333222121 23343334444566665 45554 255 344455
Q ss_pred CC-------CCCCCCCchhHHHHH
Q psy5987 153 FC-------GTDMTIGTDSALHRI 169 (197)
Q Consensus 153 i~-------g~d~s~GfdTA~~~~ 169 (197)
-| -||..+|||=....+
T Consensus 285 APfYvLGPLvTDiapGYDHIt~AI 308 (420)
T PF01964_consen 285 APFYVLGPLVTDIAPGYDHITSAI 308 (420)
T ss_dssp --EEEE--BS-SS-TT-HHHHHHH
T ss_pred CCcccCCccccccCCChhHHHHHH
Confidence 54 289999999544333
No 265
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=33.42 E-value=44 Score=24.88 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=13.8
Q ss_pred HHHHHHHhCCcEEEEecCCCcHHHH
Q psy5987 85 AAKNLIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 85 ~~~~l~~~~I~~LiviGG~gs~~~a 109 (197)
+.+.+.+...+.++++-||+-+..+
T Consensus 87 ~~~~~~~~~~d~ivLvSgD~Df~~~ 111 (146)
T PF01936_consen 87 ILELAYENPPDTIVLVSGDSDFAPL 111 (146)
T ss_dssp HHHHG--GG-SEEEEE---GGGHHH
T ss_pred HHHHhhccCCCEEEEEECcHHHHHH
Confidence 4444444567999999999887764
No 266
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=33.09 E-value=3e+02 Score=23.20 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
+...+..+.|..+++|++|+.+..
T Consensus 102 ~~~~~~~~~l~~~~vdGvIi~~~~ 125 (311)
T TIGR02405 102 QLTNEHLSVLQKRNVDGVILFGFT 125 (311)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCC
Confidence 344566788889999999999754
No 267
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.93 E-value=1.8e+02 Score=22.46 Aligned_cols=49 Identities=4% Similarity=0.059 Sum_probs=24.7
Q ss_pred HhCCcE-EEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEe
Q psy5987 91 DRGITN-LVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGL 145 (197)
Q Consensus 91 ~~~I~~-LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgi 145 (197)
.++-|. +|.+|.|+.......-.+.|.+-+++++ +..++.+++.+|+.+
T Consensus 65 ~~~pd~Vii~~G~ND~~~~~~~~~~~~~~~l~~li------~~i~~~~~~~~iil~ 114 (188)
T cd01827 65 AFNPNIVIIKLGTNDAKPQNWKYKDDFKKDYETMI------DSFQALPSKPKIYIC 114 (188)
T ss_pred ccCCCEEEEEcccCCCCCCCCccHHHHHHHHHHHH------HHHHHHCCCCeEEEE
Confidence 345565 6667888876421111123333445555 334555666666544
No 268
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.61 E-value=2.7e+02 Score=22.63 Aligned_cols=66 Identities=15% Similarity=0.037 Sum_probs=43.2
Q ss_pred eEEEeCCC-ChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 2 TAQVNKKS-SSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 2 ~aIl~sGG-~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
||+++..- ..|-.+..+.++.+.+...|+++.-+. +.. .+++
T Consensus 2 i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~---------------------------------~~~----~~~~ 44 (271)
T cd06312 2 IAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRG---------------------------------PET----FDVA 44 (271)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEEC---------------------------------CCC----CCHH
Confidence 56666554 567777888888888777666554220 111 0234
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
......+.|...++|++|+...+.
T Consensus 45 ~~~~~i~~l~~~~vdgiii~~~~~ 68 (271)
T cd06312 45 DMARLIEAAIAAKPDGIVVTIPDP 68 (271)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCh
Confidence 455677778888999999998654
No 269
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=32.45 E-value=2.6e+02 Score=22.39 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=25.4
Q ss_pred HhCCcE-EEEecCCCcHHH--HHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEee
Q psy5987 91 DRGITN-LVVIGGDGSLTG--ANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLV 146 (197)
Q Consensus 91 ~~~I~~-LiviGG~gs~~~--a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiP 146 (197)
+++-+. +|.+|.|+.... ...+.+. +++++ +.+++++++.+|+.+.
T Consensus 87 ~~~pd~VvI~~G~ND~~~~~~~~~~~~~----l~~ii------~~l~~~~P~~~Iil~~ 135 (214)
T cd01820 87 GVNPKVVVLLIGTNNIGHTTTAEEIAEG----ILAIV------EEIREKLPNAKILLLG 135 (214)
T ss_pred CCCCCEEEEEecccccCCCCCHHHHHHH----HHHHH------HHHHHHCCCCeEEEEe
Confidence 344554 566788876543 3334443 34444 3456677777776653
No 270
>PHA02728 uncharacterized protein; Provisional
Probab=32.31 E-value=24 Score=27.75 Aligned_cols=12 Identities=25% Similarity=0.243 Sum_probs=10.7
Q ss_pred EeeeecccCCCC
Q psy5987 144 GLVGSIDNDFCG 155 (197)
Q Consensus 144 giPkTIDNDi~g 155 (197)
.||-|+|||+|.
T Consensus 43 lvpytvdndlpn 54 (184)
T PHA02728 43 LVPYTVDNDLPN 54 (184)
T ss_pred ccceeccCCCCC
Confidence 389999999997
No 271
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=32.26 E-value=2.2e+02 Score=24.23 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCc-ee--cccCCCCccChhHHHHHHHHHHHhCC
Q psy5987 18 VRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGT-VI--GSARCSDFREKAGRLKAAKNLIDRGI 94 (197)
Q Consensus 18 i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs-~L--gssR~~~~~~~~~~~~~~~~l~~~~I 94 (197)
+..+.......+..-+-+.++-.| .....+..-...+...+|. .+ -|+|.. +..+++.....+.+++|
T Consensus 17 l~~~~~~~~~~~~d~v~Vt~~~~g------~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~---n~~~l~~~L~~~~~~Gi 87 (274)
T cd00537 17 LEAAADLLGALDPDFVSVTDGAGG------STRDMTLLAAARILQEGGIEPIPHLTCRDR---NRIELQSILLGAHALGI 87 (274)
T ss_pred HHHHHHHhhcCCCCEEEeCCCCCC------chhhhHHHHHHHHHHhcCCCeeeecccCCC---CHHHHHHHHHHHHHCCC
Confidence 344444332323556666666554 2233455556677777765 22 455554 45788899999999999
Q ss_pred cEEEEecCCCcHH
Q psy5987 95 TNLVVIGGDGSLT 107 (197)
Q Consensus 95 ~~LiviGG~gs~~ 107 (197)
+.+++++||-.-.
T Consensus 88 ~~iL~l~GD~~~~ 100 (274)
T cd00537 88 RNILALRGDPPKG 100 (274)
T ss_pred CeEEEeCCCCCCC
Confidence 9999999987643
No 272
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=31.97 E-value=1.5e+02 Score=27.35 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcHHHHH
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSLTGAN 110 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~ 110 (197)
.+++.+++.|-+.++|.++||||--|-.+.+
T Consensus 275 ~~RQ~A~~~La~~~vD~miVVGG~nSSNT~r 305 (387)
T PRK13371 275 QERQDAMFSLVEEPLDLMVVIGGYNSSNTTH 305 (387)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCccHHH
Confidence 4567777777767899999999999988854
No 273
>KOG1342|consensus
Probab=31.57 E-value=1e+02 Score=28.67 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=44.9
Q ss_pred eecccCCCCcc-ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEe
Q psy5987 67 VIGSARCSDFR-EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGL 145 (197)
Q Consensus 67 ~LgssR~~~~~-~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgi 145 (197)
-|+-.|...|. +.....++++..+++++--|++=||-=|++..++.+-+ .+. |.+
T Consensus 264 SL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtY-----------------------eT~-v~~ 319 (425)
T KOG1342|consen 264 SLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTY-----------------------ETG-VLL 319 (425)
T ss_pred cccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHH-----------------------Hhh-hhc
Confidence 44445555442 55677899999999999977776776677776665532 222 235
Q ss_pred eeecccCCCCCC
Q psy5987 146 VGSIDNDFCGTD 157 (197)
Q Consensus 146 PkTIDNDi~g~d 157 (197)
-..++|++|..+
T Consensus 320 ~~~~~~elP~n~ 331 (425)
T KOG1342|consen 320 DQELPNELPYND 331 (425)
T ss_pred CccccccCCCcc
Confidence 567888888755
No 274
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=31.55 E-value=69 Score=25.74 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=17.1
Q ss_pred HHHhCCcEEEEecCCCcHHHH
Q psy5987 89 LIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 89 l~~~~I~~LiviGG~gs~~~a 109 (197)
+++++.|++|+-||.++....
T Consensus 39 ~~~~~~~~iilsgGP~~~~~~ 59 (191)
T PRK06774 39 IEQLAPSHLVISPGPCTPNEA 59 (191)
T ss_pred HHhcCCCeEEEcCCCCChHhC
Confidence 456788999999999988654
No 275
>PRK07094 biotin synthase; Provisional
Probab=31.37 E-value=1.1e+02 Score=26.52 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
++++..+.++.+.+.+++.+++.||+..
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~ 98 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDP 98 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 4566667777888899999999999754
No 276
>PRK08445 hypothetical protein; Provisional
Probab=31.27 E-value=1.5e+02 Score=26.61 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=36.4
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEE
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAG 144 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvg 144 (197)
++++..+.++..++.+.+.+++.||+........+.+. + +..+++++++.+.+
T Consensus 74 ~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~e~~~~l----~----------~~Ik~~~p~i~~~a 126 (348)
T PRK08445 74 SFEEIDKKIEELLAIGGTQILFQGGVHPKLKIEWYENL----V----------SHIAQKYPTITIHG 126 (348)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHH----H----------HHHHHHCCCcEEEE
Confidence 56778888888899999999999998876544444332 2 34455556666654
No 277
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=31.19 E-value=83 Score=26.09 Aligned_cols=43 Identities=14% Similarity=0.013 Sum_probs=29.3
Q ss_pred EEEeCCCCh-hhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccC
Q psy5987 3 AQVNKKSSS-TGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDG 45 (197)
Q Consensus 3 aIl~sGG~a-pG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~ 45 (197)
||+.+|||- |---.....+++.+...+.-|+||-.|.+=|..-
T Consensus 49 gliisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a 92 (214)
T PRK07765 49 GVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCLGHQAIGVA 92 (214)
T ss_pred EEEECCCCCChhhcchHHHHHHHHHhCCCCEEEEccCHHHHHHH
Confidence 789999972 2111223456677777788999999999876643
No 278
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=30.83 E-value=62 Score=28.40 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=26.4
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
+.+.+++.++.+.+.++|+|++.|..|-..+
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~GttGE~~~ 53 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVLGTTGESPT 53 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCccchh
Confidence 4677889999999999999999999886544
No 279
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.82 E-value=2.5e+02 Score=21.70 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=27.3
Q ss_pred HHHhCCcEE-EEecCCCcHHH--HHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEe
Q psy5987 89 LIDRGITNL-VVIGGDGSLTG--ANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGL 145 (197)
Q Consensus 89 l~~~~I~~L-iviGG~gs~~~--a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgi 145 (197)
+.+.+-|.+ |.+|+|+.... ...+.+ -+.+++ +..++++++.+|+.+
T Consensus 63 ~~~~~pd~Vii~~G~ND~~~~~~~~~~~~----~l~~li------~~i~~~~~~~~iiv~ 112 (191)
T cd01836 63 LPETRFDVAVISIGVNDVTHLTSIARWRK----QLAELV------DALRAKFPGARVVVT 112 (191)
T ss_pred cccCCCCEEEEEecccCcCCCCCHHHHHH----HHHHHH------HHHHhhCCCCEEEEE
Confidence 445677776 55788887642 333433 344444 344555567777664
No 280
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=30.78 E-value=88 Score=27.52 Aligned_cols=84 Identities=21% Similarity=0.258 Sum_probs=53.2
Q ss_pred cccCCC-CccChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeee
Q psy5987 69 GSARCS-DFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVG 147 (197)
Q Consensus 69 gssR~~-~~~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPk 147 (197)
|+++.. .....+.+.++++.|.+.+ -.+++.||..-...+..|.+. . ...+...|+
T Consensus 183 g~s~~~~K~wp~e~~~~l~~~l~~~~-~~Vvl~g~~~e~e~~~~i~~~---------------------~-~~~~~l~~k 239 (334)
T COG0859 183 GASRGSAKRWPLEHYAELAELLIAKG-YQVVLFGGPDEEERAEEIAKG---------------------L-PNAVILAGK 239 (334)
T ss_pred cccccccCCCCHHHHHHHHHHHHHCC-CEEEEecChHHHHHHHHHHHh---------------------c-CCccccCCC
Confidence 445522 2235688999999999999 667777887444444444321 1 112214555
Q ss_pred ecccCC----CCCCCCCCchhHHHHHHHHHHH
Q psy5987 148 SIDNDF----CGTDMTIGTDSALHRIIEAIDA 175 (197)
Q Consensus 148 TIDNDi----~g~d~s~GfdTA~~~~~~~i~~ 175 (197)
|=-.++ ...|..+|.||+.--++.+++.
T Consensus 240 ~sL~e~~~li~~a~l~I~~DSg~~HlAaA~~~ 271 (334)
T COG0859 240 TSLEELAALIAGADLVIGNDSGPMHLAAALGT 271 (334)
T ss_pred CCHHHHHHHHhcCCEEEccCChHHHHHHHcCC
Confidence 544444 2467889999999988888765
No 281
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=30.73 E-value=2.4e+02 Score=23.84 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
+...++.+.|...++|++|+.+.+.
T Consensus 104 ~~~~~~~~~l~~~~vdgiIi~~~~~ 128 (328)
T PRK11303 104 DNEMRCAEHLLQRQVDALIVSTSLP 128 (328)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 4455678888889999999987653
No 282
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=30.66 E-value=3.3e+02 Score=22.97 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=55.1
Q ss_pred CCEEEEEcCcchhhccCC-------CCeEECChhhhhhhhhhcCceecccCCCCccChhHHHHHHHHHHHhCCcEEEEec
Q psy5987 29 GCKVFFIKEGYQGMVDGG-------DNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIG 101 (197)
Q Consensus 29 g~~v~g~~~G~~GL~~~~-------~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I~~LiviG 101 (197)
...++|+=.|-.-|.+.+ .++--++++....+...+=+ -++++.++.-+.+.+++.-.+++.+-++++|
T Consensus 24 ~~~~v~aDgGa~~l~~~gl~P~~~vGDfDSv~~e~~~~~~~~~~~----~~f~~eKd~TD~elAl~~a~e~g~d~i~i~G 99 (212)
T COG1564 24 FDKIVAADGGANHLLELGLVPDLAVGDFDSVSEELLAYYKEKTVT----IKFPAEKDSTDLELALDEALERGADEIVILG 99 (212)
T ss_pred cceEEEECcHHHHHHHcCCCccEEEecccccCHHHHHHHhhcCcc----eecChhhccchHHHHHHHHHHcCCCEEEEEe
Confidence 446899988888877652 13444555555555444322 1333344556789999999999999999999
Q ss_pred CCCcHHHHHHHHH
Q psy5987 102 GDGSLTGANLFRQ 114 (197)
Q Consensus 102 G~gs~~~a~~l~~ 114 (197)
|.|- +.=|.|+.
T Consensus 100 a~GG-R~DH~l~n 111 (212)
T COG1564 100 ALGG-RLDHALAN 111 (212)
T ss_pred cCCC-hHHHHHHH
Confidence 9998 65566654
No 283
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=30.27 E-value=2e+02 Score=21.38 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecC
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGG 102 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG 102 (197)
++....+++.+.+++++++++..|
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcc
Confidence 567788999999999999999999
No 284
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=30.13 E-value=85 Score=25.48 Aligned_cols=11 Identities=18% Similarity=0.148 Sum_probs=8.8
Q ss_pred cCCceEEEeee
Q psy5987 137 YCHLHIAGLVG 147 (197)
Q Consensus 137 ~~~i~vvgiPk 147 (197)
...++|+|||.
T Consensus 78 ~T~lPViGVPv 88 (162)
T COG0041 78 KTPLPVIGVPV 88 (162)
T ss_pred cCCCCeEeccC
Confidence 45789999994
No 285
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=29.93 E-value=40 Score=27.01 Aligned_cols=43 Identities=19% Similarity=0.037 Sum_probs=32.8
Q ss_pred EEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccC
Q psy5987 3 AQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDG 45 (197)
Q Consensus 3 aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~ 45 (197)
||+.+||+..........+++.+...+.-++|+-.|++=|..-
T Consensus 44 glii~Gg~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~ 86 (188)
T TIGR00888 44 GIILSGGPSSVYAENAPRADEKIFELGVPVLGICYGMQLMAKQ 86 (188)
T ss_pred EEEECCCCCCcCcCCchHHHHHHHhCCCCEEEECHHHHHHHHh
Confidence 7899999876554444566777777788999999999988643
No 286
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=29.87 E-value=70 Score=25.33 Aligned_cols=43 Identities=9% Similarity=-0.034 Sum_probs=34.7
Q ss_pred EEEeCCCChhhH-hHHHHHHHHHHHHcCCEEEEEcCcchhhccC
Q psy5987 3 AQVNKKSSSTGM-NAAVRACVRMGIYLGCKVFFIKEGYQGMVDG 45 (197)
Q Consensus 3 aIl~sGG~apG~-Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~ 45 (197)
||+.+||+..-- -.-...+++.+...+..++|+--|..=|...
T Consensus 45 ~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~Q~la~~ 88 (192)
T PF00117_consen 45 GIIISGGPGSPYDIEGLIELIREARERKIPILGICLGHQILAHA 88 (192)
T ss_dssp EEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHHHHHHHH
T ss_pred EEEECCcCCccccccccccccccccccceEEEEEeehhhhhHHh
Confidence 789999988766 4566667777778899999999999988754
No 287
>PTZ00063 histone deacetylase; Provisional
Probab=29.79 E-value=2.8e+02 Score=26.01 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=44.0
Q ss_pred HHHHHHHHHHH-HcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhHHHHHHHHHHHhCC
Q psy5987 16 AAVRACVRMGI-YLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGI 94 (197)
Q Consensus 16 a~i~~~v~~~~-~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I 94 (197)
.+...++..+. ....+++-+.-|++++... .+-.++ .+.+.+.++.+.++++++
T Consensus 236 ~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~D--pLg~l~-----------------------Lt~~g~~~~~~~~~~~~~ 290 (436)
T PTZ00063 236 DLFKPVISKCVEVYRPGAIVLQCGADSLTGD--RLGRFN-----------------------LTIKGHAACVEFVRSLNI 290 (436)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccccCCC--CCCCcc-----------------------cCHHHHHHHHHHHHhcCC
Confidence 34444444432 3456888888999988776 221111 134567778888999999
Q ss_pred cEEEEecCCCcHHHH
Q psy5987 95 TNLVVIGGDGSLTGA 109 (197)
Q Consensus 95 ~~LiviGG~gs~~~a 109 (197)
.-+++.||-=+....
T Consensus 291 pil~l~gGGY~~~~l 305 (436)
T PTZ00063 291 PLLVLGGGGYTIRNV 305 (436)
T ss_pred CEEEEeCccCCchHH
Confidence 988888766565443
No 288
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=29.70 E-value=95 Score=25.09 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=21.2
Q ss_pred HHHHHHHHHHH---hCCcEEEEecCCCcHHH
Q psy5987 81 GRLKAAKNLID---RGITNLVVIGGDGSLTG 108 (197)
Q Consensus 81 ~~~~~~~~l~~---~~I~~LiviGG~gs~~~ 108 (197)
+...+++.++- .++|.++++-||+-+..
T Consensus 90 Dv~laIDame~~~~~~iD~~vLvSgD~DF~~ 120 (160)
T TIGR00288 90 DVRMAVEAMELIYNPNIDAVALVTRDADFLP 120 (160)
T ss_pred cHHHHHHHHHHhccCCCCEEEEEeccHhHHH
Confidence 45555555554 69999999999998865
No 289
>PRK11440 putative hydrolase; Provisional
Probab=29.69 E-value=2.1e+02 Score=22.71 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCEEEEEcCcc
Q psy5987 17 AVRACVRMGIYLGCKVFFIKEGY 39 (197)
Q Consensus 17 ~i~~~v~~~~~~g~~v~g~~~G~ 39 (197)
.+..+++.++..|..|+-+++++
T Consensus 36 ~i~~l~~~ar~~g~pVi~~~~~~ 58 (188)
T PRK11440 36 RAARLAAKFRASGSPVVLVRVGW 58 (188)
T ss_pred HHHHHHHHHHHcCCcEEEEeccc
Confidence 34666677788899888887664
No 290
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=29.48 E-value=4e+02 Score=23.54 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=26.6
Q ss_pred ChhHHHHHHHHHHH----hCCcEEEEecCCCcHHHHHHH
Q psy5987 78 EKAGRLKAAKNLID----RGITNLVVIGGDGSLTGANLF 112 (197)
Q Consensus 78 ~~~~~~~~~~~l~~----~~I~~LiviGG~gs~~~a~~l 112 (197)
++++..++++.+++ .+.|++||.-|.+||.....+
T Consensus 58 t~~~w~~la~~i~~~~~~~~~dG~VVtHGTDTmeeTA~~ 96 (323)
T smart00870 58 TPADWLKLAKRINEALADDGYDGVVVTHGTDTLEETAYF 96 (323)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCCccHHHHHHH
Confidence 46677777666654 479999999999999875543
No 291
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=28.95 E-value=69 Score=27.59 Aligned_cols=30 Identities=33% Similarity=0.423 Sum_probs=24.1
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
+.+.+++.++.+.+.++|+|++.|..|-..
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~GstGE~~ 47 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAGTTGLGP 47 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcccCCCcc
Confidence 456778888888889999999998877543
No 292
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=28.82 E-value=2.5e+02 Score=21.72 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHhCCcEEEEec
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIG 101 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviG 101 (197)
...+++.+.+++++++. ||+|
T Consensus 41 ~~~~~l~~~i~~~~i~~-iVvG 61 (138)
T PRK00109 41 PDWDRLEKLIKEWQPDG-LVVG 61 (138)
T ss_pred hHHHHHHHHHHHhCCCE-EEEe
Confidence 35788889999999985 5666
No 293
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=28.61 E-value=1.5e+02 Score=22.03 Aligned_cols=50 Identities=24% Similarity=0.129 Sum_probs=32.1
Q ss_pred hhhhhhcCceecccCCCCccChhHHHHHHHHHHHhCC-cEEEEecCCCcHHH
Q psy5987 58 SSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGI-TNLVVIGGDGSLTG 108 (197)
Q Consensus 58 ~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I-~~LiviGG~gs~~~ 108 (197)
+.....+-.+++-|-... ...+..+++++.|++.+. +-.+++||...-..
T Consensus 44 ~~a~~~~~d~V~iS~~~~-~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~ 94 (122)
T cd02071 44 EAAIQEDVDVIGLSSLSG-GHMTLFPEVIELLRELGAGDILVVGGGIIPPED 94 (122)
T ss_pred HHHHHcCCCEEEEcccch-hhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHH
Confidence 344444444554444332 245677889999999877 66789999876443
No 294
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=28.54 E-value=2.5e+02 Score=21.38 Aligned_cols=60 Identities=22% Similarity=0.193 Sum_probs=37.4
Q ss_pred EEEeCCCChhh---HhHHHHHHHHHHHHcCCEEEEEcCcch-----hhccCCCCeEECChhhhhhhhhhc
Q psy5987 3 AQVNKKSSSTG---MNAAVRACVRMGIYLGCKVFFIKEGYQ-----GMVDGGDNIVEANWSSVSSIIHKG 64 (197)
Q Consensus 3 aIl~sGG~apG---~Na~i~~~v~~~~~~g~~v~g~~~G~~-----GL~~~~~~~~~l~~~~v~~~~~~g 64 (197)
+|+..||+.+- -|.-+...++.+..++..+.++-.|-. ||+++ .-.-..|.....+...+
T Consensus 63 ~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g--~~~T~~~~~~~~~~~~~ 130 (166)
T TIGR01382 63 ALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRG--KKLTSYPAIIDDVKNAG 130 (166)
T ss_pred EEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhcCccCC--CEEEcCccHHHHHHHCC
Confidence 56777876532 234567777777778889999998874 55555 43444455444444443
No 295
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=28.54 E-value=1.2e+02 Score=24.53 Aligned_cols=10 Identities=40% Similarity=0.886 Sum_probs=4.4
Q ss_pred CcEEEEecCC
Q psy5987 94 ITNLVVIGGD 103 (197)
Q Consensus 94 I~~LiviGG~ 103 (197)
.|++|+-||.
T Consensus 39 ~dgiii~GG~ 48 (189)
T PRK13525 39 IDGLILPGGE 48 (189)
T ss_pred CCEEEECCCC
Confidence 4444444443
No 296
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=28.49 E-value=3.3e+02 Score=22.23 Aligned_cols=32 Identities=0% Similarity=-0.198 Sum_probs=24.4
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEE
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVF 33 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~ 33 (197)
||++...-..|-....+.++.+.+..+|++++
T Consensus 2 Igvi~p~~~~~~~~~~~~~i~~~~~~~gy~~~ 33 (269)
T cd06297 2 ISVLLPVVATEFYRRLLEGIEGALLEQRYDLA 33 (269)
T ss_pred EEEEeCCCcChhHHHHHHHHHHHHHHCCCEEE
Confidence 67777665667788888888888888777665
No 297
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=28.47 E-value=3.9e+02 Score=23.27 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=26.6
Q ss_pred hcCCceEEEeeeecccCCCCCCCC-CCchhHHHHHHHHHHHHH
Q psy5987 136 KYCHLHIAGLVGSIDNDFCGTDMT-IGTDSALHRIIEAIDAIV 177 (197)
Q Consensus 136 ~~~~i~vvgiPkTIDNDi~g~d~s-~GfdTA~~~~~~~i~~l~ 177 (197)
+..+++||++--| |+|..++|+- ||=|=|.+.++-.+.-|.
T Consensus 176 ~klgIPVvAlvDT-n~dpd~VD~~IP~Ndda~rsi~Li~~~lA 217 (252)
T COG0052 176 NKLGIPVVALVDT-NCDPDGVDYVIPGNDDAIRSIALIYWLLA 217 (252)
T ss_pred HHcCCCEEEEecC-CCCCccCceeecCCChHHHHHHHHHHHHH
Confidence 4468999998666 5666666643 466666666665555543
No 298
>PLN02428 lipoic acid synthase
Probab=28.42 E-value=2.1e+02 Score=26.00 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
+++..++++.+.+.+++.+++.+|+.
T Consensus 132 ~~Ep~~vA~~v~~~Glk~vvltSg~r 157 (349)
T PLN02428 132 PDEPENVAEAIASWGVDYVVLTSVDR 157 (349)
T ss_pred hhhHHHHHHHHHHcCCCEEEEEEcCC
Confidence 44566788889999999999999963
No 299
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=28.26 E-value=2.6e+02 Score=21.34 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHhCCcEEEEec
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIG 101 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviG 101 (197)
...+++.+.+++++++. ||+|
T Consensus 35 ~~~~~l~~~i~~~~~~~-iVvG 55 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDK-IVVG 55 (130)
T ss_pred HHHHHHHHHHHHcCCCE-EEEe
Confidence 45778889999999985 5667
No 300
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=28.14 E-value=2.4e+02 Score=25.66 Aligned_cols=77 Identities=12% Similarity=0.023 Sum_probs=42.4
Q ss_pred hhHHHHHHH-HHHHh-CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCC
Q psy5987 79 KAGRLKAAK-NLIDR-GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGT 156 (197)
Q Consensus 79 ~~~~~~~~~-~l~~~-~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~ 156 (197)
++++.++++ .++++ +.+.++|++..-+--...-+ +.+++ +.+++..+++|+.|+ -.+..+.
T Consensus 72 ~~~L~~aI~~~~~~~p~p~~i~V~~tc~~~liGdDi----~~v~~----------~~~~~~~~~~vi~v~---tpgf~g~ 134 (415)
T cd01977 72 EKKLKKNIIEAFKEFPDIKRMTVYTTCTTALIGDDI----KAVAK----------EVMEELPDVDIFVCN---APGFAGP 134 (415)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECCCchhhhcCCH----HHHHH----------HHHHhcCCCeEEEEe---CCCcCCc
Confidence 345555444 45556 57888888876554433222 22222 233344447887776 2344444
Q ss_pred CCCCCchhHHHHHHHH
Q psy5987 157 DMTIGTDSALHRIIEA 172 (197)
Q Consensus 157 d~s~GfdTA~~~~~~~ 172 (197)
.+.-||+.|++.+.+.
T Consensus 135 ~~~~G~~~a~~al~~~ 150 (415)
T cd01977 135 SQSKGHHVLNIAWINQ 150 (415)
T ss_pred chhHHHHHHHHHHHHH
Confidence 4566888887766543
No 301
>PRK09492 treR trehalose repressor; Provisional
Probab=28.10 E-value=3.6e+02 Score=22.55 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHhCCcEEEEecC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGG 102 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG 102 (197)
+...+..+.|...++|++|+.+-
T Consensus 105 ~~~~~~~~~l~~~~vdgiIi~~~ 127 (315)
T PRK09492 105 EKVNEHLGVLKRRNVDGVILFGF 127 (315)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCC
Confidence 34456778889999999999874
No 302
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=28.08 E-value=1.8e+02 Score=25.78 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=24.3
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
++++..+.++.+.+++++.+.+.||+.+.
T Consensus 71 s~eeI~e~~~~~~~~G~~~i~l~gG~~p~ 99 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGATEVCIQGGIHPD 99 (343)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCC
Confidence 67788888888899999999999997653
No 303
>PRK14558 pyrH uridylate kinase; Provisional
Probab=28.07 E-value=1.1e+02 Score=25.52 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=24.2
Q ss_pred hcCceecccCCCCccChhHHHHHHHHHHHh---CCcEEEEecCCCcH
Q psy5987 63 KGGTVIGSARCSDFREKAGRLKAAKNLIDR---GITNLVVIGGDGSL 106 (197)
Q Consensus 63 ~gGs~LgssR~~~~~~~~~~~~~~~~l~~~---~I~~LiviGG~gs~ 106 (197)
-|||.|-.... ...+++..+++++.++++ +.+-++|.|| |+.
T Consensus 7 lGgs~lt~~~~-~~~~~~~i~~la~~i~~~~~~g~~viiV~Gg-Gs~ 51 (231)
T PRK14558 7 LSGEALSGEGE-KGFDPERVNYLVNEIKSVVEYGFKIGIVIGA-GNL 51 (231)
T ss_pred eeHHHccCCCC-CCcCHHHHHHHHHHHHHHHHCCCeEEEEECc-cHH
Confidence 46777732222 122456677777776654 5666777766 554
No 304
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=28.00 E-value=1.7e+02 Score=25.42 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=26.0
Q ss_pred EEEEecCCCcHHHHH----HHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEe
Q psy5987 96 NLVVIGGDGSLTGAN----LFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGL 145 (197)
Q Consensus 96 ~LiviGG~gs~~~a~----~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgi 145 (197)
-.|.||+|+....+. .-.++|.+-|++++ +..++..+...|+.+
T Consensus 123 VtI~IG~ND~c~~~~~~~~~~~~~~~~nL~~~L------~~Lr~~~P~~~V~lv 170 (288)
T cd01824 123 ITIFIGGNDLCSLCEDANPGSPQTFVKNLRKAL------DILRDEVPRAFVNLV 170 (288)
T ss_pred EEEEecchhHhhhcccccCcCHHHHHHHHHHHH------HHHHHhCCCcEEEEE
Confidence 458899999976432 11244555566555 456666666555444
No 305
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=27.95 E-value=1.4e+02 Score=26.54 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
...+.+.|++++-|.+++.|--.+.-++...+
T Consensus 56 ~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA 87 (346)
T PF02350_consen 56 IIELADVLEREKPDAVLVLGDRNEALAAALAA 87 (346)
T ss_dssp HHHHHHHHHHHT-SEEEEETTSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEcCCchHHHHHHHH
Confidence 56678899999999999999998888876665
No 306
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=27.78 E-value=3.2e+02 Score=21.89 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=44.5
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
.||++...-..|=....+.++.+.+...|++++-... + .+++
T Consensus 1 ~i~~i~~~~~~~~~~~i~~gi~~~~~~~g~~~~~~~~------~--------------------------------~~~~ 42 (260)
T cd06286 1 TIGVVLPYINHPYFSQLVDGIEKAALKHGYKVVLLQT------N--------------------------------YDKE 42 (260)
T ss_pred CEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC------C--------------------------------CChH
Confidence 3677777766777778888888888777877653310 0 0122
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
...++.+.+...++|++++.+-+.+
T Consensus 43 ~~~~~i~~l~~~~vdgiii~~~~~~ 67 (260)
T cd06286 43 KELEYLELLKTKQVDGLILCSREND 67 (260)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 3346667788889999999876544
No 307
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.71 E-value=2.9e+02 Score=21.45 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCcEEEEe-cCCCcH
Q psy5987 82 RLKAAKNLIDRGITNLVVI-GGDGSL 106 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~Livi-GG~gs~ 106 (197)
..++.+.+.+.+-|.+++. |+|+..
T Consensus 48 ~~~~~~~l~~~~pd~vii~~G~ND~~ 73 (200)
T cd01829 48 PEKLKELIAEEKPDVVVVFLGANDRQ 73 (200)
T ss_pred HHHHHHHHhcCCCCEEEEEecCCCCc
Confidence 3456666778888987766 888765
No 308
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=27.48 E-value=1.2e+02 Score=24.52 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
+.++++.+.++++++..+++.|--+.
T Consensus 57 ~~~~~~~~~l~~~~~p~~~v~GNHD~ 82 (240)
T cd07402 57 ESYERLRELLAALPIPVYLLPGNHDD 82 (240)
T ss_pred HHHHHHHHHHhhcCCCEEEeCCCCCC
Confidence 34455555555666655555554443
No 309
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=27.30 E-value=1.1e+02 Score=26.20 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHh
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEW 116 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~ 116 (197)
...+.+.+++.+-+ .|++|+-|--.-+++|.+.|
T Consensus 163 ~~~~~~a~~edgAe-aIiLGCAGms~la~~Lq~~~ 196 (230)
T COG4126 163 VIEAAEALKEDGAE-AIILGCAGMSDLADQLQKAF 196 (230)
T ss_pred HHHHHHHhhhcCCC-EEEEcCccHHHHHHHHHHHh
Confidence 35578888988988 57889988666677776543
No 310
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=26.93 E-value=2.2e+02 Score=25.15 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
++++..+.++.+.+.+++.+++.|++.
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ 118 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDR 118 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecC
Confidence 567788899999999999999999864
No 311
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=26.87 E-value=45 Score=29.93 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=46.1
Q ss_pred HhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCC------CC-CCCCCCch
Q psy5987 91 DRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDF------CG-TDMTIGTD 163 (197)
Q Consensus 91 ~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi------~g-~d~s~Gfd 163 (197)
...++.+++-||.-|+-....|.+. ++.+- +.. .....+.+-.=|.+++-|. .| .-.++|.+
T Consensus 54 ~~~~~tiy~GGGTPs~L~~~~l~~l----l~~i~------~~~-~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQ 122 (353)
T PRK05904 54 IKQFKTIYLGGGTPNCLNDQLLDIL----LSTIK------PYV-DNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQ 122 (353)
T ss_pred CCCeEEEEECCCccccCCHHHHHHH----HHHHH------Hhc-CCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecc
Confidence 3568999999999999777777543 32221 000 1112455556688886444 13 45789998
Q ss_pred hHHHHHHHHHHH
Q psy5987 164 SALHRIIEAIDA 175 (197)
Q Consensus 164 TA~~~~~~~i~~ 175 (197)
|.-..+.+.+++
T Consensus 123 S~~d~vL~~l~R 134 (353)
T PRK05904 123 SMNNNILKQLNR 134 (353)
T ss_pred cCCHHHHHHcCC
Confidence 887777666554
No 312
>PHA00447 lysozyme
Probab=26.69 E-value=2.3e+02 Score=22.05 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=17.1
Q ss_pred HHHhhcCCceEEEeeeecccCCCCCCCCCCchh
Q psy5987 132 DQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDS 164 (197)
Q Consensus 132 ~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdT 164 (197)
...++++...|+|= +|+..++ ||||+=
T Consensus 108 ~L~~~~~~~~I~GH-----rd~~~t~-cPg~~l 134 (142)
T PHA00447 108 TLKAKYPGAEIKAH-----HDVAPKA-CPSFDL 134 (142)
T ss_pred HHHHHCCCCEEEec-----cCCCCCC-CCCHHH
Confidence 34555566666653 5666665 899984
No 313
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=26.58 E-value=1.2e+02 Score=28.07 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=45.3
Q ss_pred HHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecc--cCCCCccC-hhHHHH-HHHHHHHhCCcEEEEec
Q psy5987 26 IYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS--ARCSDFRE-KAGRLK-AAKNLIDRGITNLVVIG 101 (197)
Q Consensus 26 ~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~Lgs--sR~~~~~~-~~~~~~-~~~~l~~~~I~~LiviG 101 (197)
..+|.+++-+-=|..+--.. ..+++.++|......+-..+.+ .|.+-... -....+ +.+.+++.+|+++|-+|
T Consensus 25 ~~~G~~v~~iDvg~~~~~~~---~~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~~ga~~~v~~l~~~g~i~Gvi~~G 101 (403)
T PF06792_consen 25 EAQGVEVLLIDVGTLGEPSF---PPDISREEVARAAGDSIEAVRSSGDRGEAIEAMARGAARFVSDLYDEGKIDGVIGIG 101 (403)
T ss_pred HHCCCcEEEEEcCCCCCCCC---CCCcCHHHHHHhcCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence 46799999998888874332 3477777776654443333332 23221100 011222 33444556799999999
Q ss_pred CCCcHH
Q psy5987 102 GDGSLT 107 (197)
Q Consensus 102 G~gs~~ 107 (197)
|.+--.
T Consensus 102 Gs~GT~ 107 (403)
T PF06792_consen 102 GSGGTA 107 (403)
T ss_pred CCccHH
Confidence 985433
No 314
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=26.44 E-value=2.6e+02 Score=21.92 Aligned_cols=61 Identities=25% Similarity=0.167 Sum_probs=37.0
Q ss_pred EEEeCCCChhh---HhHHHHHHHHHHHHcCCEEEEEcCcch-----hhccCCCCeEECChhhhhhhhhhcC
Q psy5987 3 AQVNKKSSSTG---MNAAVRACVRMGIYLGCKVFFIKEGYQ-----GMVDGGDNIVEANWSSVSSIIHKGG 65 (197)
Q Consensus 3 aIl~sGG~apG---~Na~i~~~v~~~~~~g~~v~g~~~G~~-----GL~~~~~~~~~l~~~~v~~~~~~gG 65 (197)
+++..||+.+- -|..+..+++.+..++..|.++-.|.. ||+++ .-.-..|.....+.+.++
T Consensus 79 ~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~agll~g--~~~T~h~~~~~~~~~~~~ 147 (180)
T cd03169 79 ALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKG--RRCTAYPACKPEVELAGG 147 (180)
T ss_pred EEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHcCccCC--CEEecccchHHHHHHCCC
Confidence 56777886442 244566777777788889999999986 44454 333333443334444333
No 315
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=26.41 E-value=2.7e+02 Score=21.30 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHcCCEEEEEcCcchhhccCC-------CCeEEC-C--hhhhhhhhhhcCce-ecccCCCCccChhHHHH
Q psy5987 16 AAVRACVRMGIYLGCKVFFIKEGYQGMVDGG-------DNIVEA-N--WSSVSSIIHKGGTV-IGSARCSDFREKAGRLK 84 (197)
Q Consensus 16 a~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~-------~~~~~l-~--~~~v~~~~~~gGs~-LgssR~~~~~~~~~~~~ 84 (197)
..+..+++.++..+..|+....-+....... ...... + ++-+..+....+.. +--.+...|. -..
T Consensus 27 ~~i~~l~~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~~~~vi~K~~~saf~----~t~ 102 (174)
T PF00857_consen 27 PNINRLLDAARAAGVPVIHTRDIHDSPHWSGPFEPKPWPPHCIPGSPGAELVPELAPQPGDPVIEKNRYSAFF----GTD 102 (174)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEESBSTTTTTTSGGHSCHTSCSBTTSGGGSBHGGGHCHTTSEEEEESSSSTTT----TSS
T ss_pred HHHHHHHHHHHHhCCCeEEEEeeecccccccccccccccccccCCCCccceeeEeecccccceEEeecccccc----ccc
Confidence 3446666667788888999888887111100 000000 0 11222333332332 3222333332 123
Q ss_pred HHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 85 AAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 85 ~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
..+.|++++++.|++.|-.-..--
T Consensus 103 L~~~L~~~gi~~vil~G~~t~~CV 126 (174)
T PF00857_consen 103 LDEILRKRGIDTVILCGVATDVCV 126 (174)
T ss_dssp HHHHHHHTTESEEEEEEESTTTHH
T ss_pred ccccccccccceEEEcccccCcEE
Confidence 566688899999999998765543
No 316
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=26.36 E-value=2.6e+02 Score=24.53 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcHHHHHH
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSLTGANL 111 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~ 111 (197)
.+++.+++.|-+ .+|.++||||-.|-.+.++
T Consensus 196 ~~RQ~a~~~la~-~vD~miVVGg~nSsNT~rL 226 (280)
T TIGR00216 196 QNRQDAVKELAP-EVDLMIVIGGKNSSNTTRL 226 (280)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCchHHHH
Confidence 345666666643 6999999999999988543
No 317
>PLN02327 CTP synthase
Probab=26.29 E-value=1.5e+02 Score=28.72 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTD 157 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d 157 (197)
+++.+..+-+.|+ +.|++++-||.|+-....++... +++++ .++++.||
T Consensus 349 ~~~~y~~~~~~L~--~~DGIvvpGGfG~~~~~G~i~ai---------------~~are--~~iP~LGI------------ 397 (557)
T PLN02327 349 TPDAYAAAWKLLK--GADGILVPGGFGDRGVEGKILAA---------------KYARE--NKVPYLGI------------ 397 (557)
T ss_pred ccchhhhhHHhhc--cCCEEEeCCCCCCcccccHHHHH---------------HHHHH--cCCCEEEE------------
Q ss_pred CCCCchhHHHHHHHHH
Q psy5987 158 MTIGTDSALHRIIEAI 173 (197)
Q Consensus 158 ~s~GfdTA~~~~~~~i 173 (197)
|+|++-++-..+.-+
T Consensus 398 -ClGmQl~viefaRnv 412 (557)
T PLN02327 398 -CLGMQIAVIEFARSV 412 (557)
T ss_pred -cHHHHHHHHHHHHhh
No 318
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=25.93 E-value=3e+02 Score=20.98 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCEEEEEcCcchhhcc-CCCCeEECChhhhhhhhh-hcCc--eecccCCCCccChhHHHHHHHHHHHhCC
Q psy5987 19 RACVRMGIYLGCKVFFIKEGYQGMVD-GGDNIVEANWSSVSSIIH-KGGT--VIGSARCSDFREKAGRLKAAKNLIDRGI 94 (197)
Q Consensus 19 ~~~v~~~~~~g~~v~g~~~G~~GL~~-~~~~~~~l~~~~v~~~~~-~gGs--~LgssR~~~~~~~~~~~~~~~~l~~~~I 94 (197)
+.+++.+..++++|+++...-..+-+ ...+++..+..+...+.. ..|. ++-+-... ..+....+.+.+.+++.++
T Consensus 12 ~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~-~~~~~~~~~~~~a~~~~~~ 90 (183)
T PF13460_consen 12 RALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP-PKDVDAAKNIIEAAKKAGV 90 (183)
T ss_dssp HHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST-TTHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhh-ccccccccccccccccccc
Confidence 44566666778999999888776663 222466666655554422 2232 22111111 1124557788999999999
Q ss_pred cEEEEecCCCcHH
Q psy5987 95 TNLVVIGGDGSLT 107 (197)
Q Consensus 95 ~~LiviGG~gs~~ 107 (197)
..++++++-+...
T Consensus 91 ~~~v~~s~~~~~~ 103 (183)
T PF13460_consen 91 KRVVYLSSAGVYR 103 (183)
T ss_dssp SEEEEEEETTGTT
T ss_pred ccceeeeccccCC
Confidence 9999999877554
No 319
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=25.91 E-value=4.2e+02 Score=22.60 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
+...+..+.|...++|++|+.+.+
T Consensus 102 ~~~~~~i~~l~~~~vdgiIi~~~~ 125 (343)
T PRK10727 102 QKERQAIEQLIRHRCAALVVHAKM 125 (343)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCC
Confidence 444567788889999999998764
No 320
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.84 E-value=3.6e+02 Score=21.87 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=40.3
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
+||++.---.-|-...++.++.+.+..+|+++.-. .+. .+++
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~----------------------------------~~~----~~~~ 42 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELIST----------------------------------DAQ----GDLT 42 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEE----------------------------------cCC----CCHH
Confidence 35655543345667777777777777777665421 000 0123
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
...+..+.+...++|++++.+.+
T Consensus 43 ~~~~~i~~~~~~~~Dgiii~~~~ 65 (282)
T cd06318 43 KQIADVEDLLTRGVNVLIINPVD 65 (282)
T ss_pred HHHHHHHHHHHcCCCEEEEecCC
Confidence 34567778889999999987654
No 321
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=25.78 E-value=78 Score=27.69 Aligned_cols=82 Identities=12% Similarity=0.160 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCC---ceEEEeeeecccCCC-
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCH---LHIAGLVGSIDNDFC- 154 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~---i~vvgiPkTIDNDi~- 154 (197)
.+++.++.+...+.+...+++-||+.|.-....|.+.+ ++ .++ .+. +.+-.=|.+++.+..
T Consensus 63 ~~qi~~~~~~~~~~~~~~iyf~ggt~t~l~~~~L~~l~----~~----------i~~-~~~~~~isi~trpd~l~~e~l~ 127 (302)
T TIGR01212 63 KEQIKKQMKKYKKDKKFIAYFQAYTNTYAPVEVLKEMY----EQ----------ALS-YDDVVGLSVGTRPDCVPDEVLD 127 (302)
T ss_pred HHHHHHHHHHhhccCEEEEEEECCCcCCCCHHHHHHHH----HH----------HhC-CCCEEEEEEEecCCcCCHHHHH
Confidence 34556666666555555578889999877777666532 22 222 122 222223777766421
Q ss_pred --------CC--CCCCCchhHHHHHHHHHHH
Q psy5987 155 --------GT--DMTIGTDSALHRIIEAIDA 175 (197)
Q Consensus 155 --------g~--d~s~GfdTA~~~~~~~i~~ 175 (197)
|. ..++|.+|+-....+.+.+
T Consensus 128 ~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~R 158 (302)
T TIGR01212 128 LLAEYVERGYEVWVELGLQTAHDKTLKKINR 158 (302)
T ss_pred HHHHhhhCCceEEEEEccCcCCHHHHHHHcC
Confidence 33 2578988887666555433
No 322
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=25.73 E-value=3.3e+02 Score=25.29 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=43.4
Q ss_pred hhHHHHHH-HHHHHh-CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCC
Q psy5987 79 KAGRLKAA-KNLIDR-GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGT 156 (197)
Q Consensus 79 ~~~~~~~~-~~l~~~-~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~ 156 (197)
++++++++ +..+++ +.+.+++++..-+--...-+ +.+.+ +.+++..+++||.|+. .+..+.
T Consensus 109 e~kL~~aI~e~~~~~p~p~~I~V~stC~~~lIGDDi----~~v~~----------e~~~~~~~~pvv~v~t---~gf~g~ 171 (457)
T TIGR01284 109 EKKLKRCILEAFREFPEIKRMYTYATCTTALIGDDI----DAIAR----------EVMEEIPDVDVFAINA---PGFAGP 171 (457)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCChHHhhccCH----HHHHH----------HHHHhcCCCeEEEeeC---CCcCCc
Confidence 44555544 444556 58889998876544332222 12222 2333444478877762 355555
Q ss_pred CCCCCchhHHHHHHH
Q psy5987 157 DMTIGTDSALHRIIE 171 (197)
Q Consensus 157 d~s~GfdTA~~~~~~ 171 (197)
.++-||+.|.+.+.+
T Consensus 172 s~~~G~~~a~~al~~ 186 (457)
T TIGR01284 172 SQSKGHHVANITWIN 186 (457)
T ss_pred ccchHHHHHHHHHHH
Confidence 567899988886554
No 323
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=25.63 E-value=3.6e+02 Score=21.79 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
+...+..+.+...++|++|+...+
T Consensus 47 ~~~~~~~~~~~~~~vdgiIi~~~~ 70 (272)
T cd06300 47 AQQIADIRNLIAQGVDAIIINPAS 70 (272)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC
Confidence 345567777888899999998865
No 324
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.45 E-value=3.7e+02 Score=21.82 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
.+....+.+.+...++|++++.+.+.
T Consensus 46 ~~~~~~~~~~l~~~~vDgiii~~~~~ 71 (274)
T cd06311 46 TEQQNAQQDLLINRKIDALVILPFES 71 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 34566788889999999999987653
No 325
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=25.44 E-value=78 Score=20.58 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=14.0
Q ss_pred HHHHHHHhcCCCcHHHHh
Q psy5987 118 ELLDQLLKDGSITKDQRE 135 (197)
Q Consensus 118 ~~l~~l~~~~~~~~~~~~ 135 (197)
+-|+||+.++.|++....
T Consensus 17 dtLDeli~~~~I~p~La~ 34 (49)
T PF02268_consen 17 DTLDELIQEGKITPQLAM 34 (49)
T ss_dssp HHHHHHHHTTSS-HHHHH
T ss_pred HHHHHHHHcCCCCHHHHH
Confidence 468999999999988765
No 326
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.15 E-value=3.6e+02 Score=21.55 Aligned_cols=66 Identities=9% Similarity=0.155 Sum_probs=40.6
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|=....+.++-+.+...|++++-+ .+.. +++.
T Consensus 2 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~----------------------------------~~~~----~~~~ 43 (268)
T cd06289 2 IGLVINDLTNPFFAELAAGLEEVLEEAGYTVFLA----------------------------------NSGE----DVER 43 (268)
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHHcCCeEEEe----------------------------------cCCC----ChHH
Confidence 5666654445666667777777776666655321 1111 1233
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..++++++...++|++++..-+.+
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~ 67 (268)
T cd06289 44 QEQLLSTMLEHGVAGIILCPAAGT 67 (268)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCc
Confidence 456777788889999999886544
No 327
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=25.13 E-value=85 Score=27.53 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=25.1
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
+.+.+++.++.|.+.++++|++.|..|-...
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~ 57 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTFGECAT 57 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccccchh
Confidence 5677888888888899999999988876543
No 328
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=25.08 E-value=4.8e+02 Score=23.04 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=26.0
Q ss_pred ChhHHHHHHHHHHHh--CCcEEEEecCCCcHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDR--GITNLVVIGGDGSLTGANLF 112 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~--~I~~LiviGG~gs~~~a~~l 112 (197)
++++..++++.++++ +.|++||.=|.+||.....+
T Consensus 61 t~~~w~~l~~~I~~~~~~~dGiVVtHGTDTmeeTA~~ 97 (323)
T cd00411 61 TDEDWLKIAKDINELYDSYDGFVITHGTDTMEETAYF 97 (323)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEcCcccHHHHHHH
Confidence 466776666655543 69999999999999875543
No 329
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=25.03 E-value=3.1e+02 Score=20.84 Aligned_cols=40 Identities=23% Similarity=0.038 Sum_probs=27.5
Q ss_pred EEEeCCCChhh---HhHHHHHHHHHHHHcCCEEEEEcCcchhh
Q psy5987 3 AQVNKKSSSTG---MNAAVRACVRMGIYLGCKVFFIKEGYQGM 42 (197)
Q Consensus 3 aIl~sGG~apG---~Na~i~~~v~~~~~~g~~v~g~~~G~~GL 42 (197)
+++..||+.+- -|.-+...++.+..++..|.++-+|-.-|
T Consensus 65 ~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~L 107 (165)
T cd03134 65 ALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVL 107 (165)
T ss_pred EEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHH
Confidence 46667776332 35566777777777888899999986533
No 330
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=25.03 E-value=3.2e+02 Score=21.03 Aligned_cols=79 Identities=14% Similarity=0.034 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhh-hhhhhcCceecccCCCCccChhHHHHHHHHHHHh-CC
Q psy5987 17 AVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVS-SIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDR-GI 94 (197)
Q Consensus 17 ~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~-~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~-~I 94 (197)
....+++.+.+.+++-+++..+-.. . ..... .+.+. .+...|..+....... ...+..++.+.+.+++. +.
T Consensus 111 ~~~~~~~~l~~~~~~~i~~i~~~~~---~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 183 (269)
T cd01391 111 AGEAAAEYLAEKGWKRVALIYGDDG---A--YGRER-LEGFKAALKKAGIEVVAIEYGD-LDTEKGFQALLQLLKAAPKP 183 (269)
T ss_pred HHHHHHHHHHHhCCceEEEEecCCc---c--hhhHH-HHHHHHHHHhcCcEEEeccccC-CCccccHHHHHHHHhcCCCC
Confidence 4566677777777866666554332 1 11111 11222 2233444443222222 11224677888888887 79
Q ss_pred cEEEEecC
Q psy5987 95 TNLVVIGG 102 (197)
Q Consensus 95 ~~LiviGG 102 (197)
+++++.+.
T Consensus 184 ~~i~~~~~ 191 (269)
T cd01391 184 DAIFACND 191 (269)
T ss_pred CEEEEcCc
Confidence 98888765
No 331
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=24.98 E-value=4.1e+02 Score=22.14 Aligned_cols=65 Identities=17% Similarity=0.292 Sum_probs=41.4
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCC-EEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGC-KVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~-~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
||++...-..|-.+.++.++.+.+...|+ .++-. +.++. +.+
T Consensus 1 Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~i~~---------------------------------~~~~~----d~~ 43 (302)
T TIGR02637 1 IGLVVKSLGNPFFEAANKGAEEAAKELGSVYIIYT---------------------------------GPTGT----TAE 43 (302)
T ss_pred CEEEeccCCCHHHHHHHHHHHHHHHHhCCeeEEEE---------------------------------CCCCC----CHH
Confidence 46666666677788888888888777663 22110 11111 123
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
.....++.|...++|++++.+-+
T Consensus 44 ~q~~~i~~l~~~~vdgiIi~~~~ 66 (302)
T TIGR02637 44 GQIEVVNSLIAQKVDAIAISAND 66 (302)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCC
Confidence 44567888888999999998754
No 332
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=24.89 E-value=1.2e+02 Score=25.70 Aligned_cols=40 Identities=13% Similarity=-0.010 Sum_probs=28.4
Q ss_pred EEEeCCCCh-hhHhHHHHHHHHHHHHcCCEEEEEcCcchhhc
Q psy5987 3 AQVNKKSSS-TGMNAAVRACVRMGIYLGCKVFFIKEGYQGMV 43 (197)
Q Consensus 3 aIl~sGG~a-pG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~ 43 (197)
||+.+||+. |.... ...+++.+...+.-++|+-.|++=+.
T Consensus 58 givl~GG~~~~~~~~-~~~~i~~~~~~~~PvlGIClG~Q~l~ 98 (235)
T cd01746 58 GILVPGGFGIRGVEG-KILAIKYARENNIPFLGICLGMQLAV 98 (235)
T ss_pred EEEECCCCCCcchhh-HHHHHHHHHHCCceEEEEEhHHHHHH
Confidence 788888873 33333 33456667778899999999997553
No 333
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=24.87 E-value=1e+02 Score=18.19 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=17.2
Q ss_pred ECChhhhhhhhhhcCceecccCCCCccChhHHHHHHHHHHHhCC
Q psy5987 51 EANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGI 94 (197)
Q Consensus 51 ~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I 94 (197)
+++++++..+ +|++| +-..++.+.|++.++
T Consensus 2 ~mtr~diA~~-------lG~t~-------ETVSR~l~~l~~~gl 31 (32)
T PF00325_consen 2 PMTRQDIADY-------LGLTR-------ETVSRILKKLERQGL 31 (32)
T ss_dssp E--HHHHHHH-------HTS-H-------HHHHHHHHHHHHTTS
T ss_pred CcCHHHHHHH-------hCCcH-------HHHHHHHHHHHHcCC
Confidence 3455555443 66655 557788888887654
No 334
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=24.83 E-value=5.2e+02 Score=23.31 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=25.7
Q ss_pred ChhHHHHHHHHHHH----hCCcEEEEecCCCcHHHHHHH
Q psy5987 78 EKAGRLKAAKNLID----RGITNLVVIGGDGSLTGANLF 112 (197)
Q Consensus 78 ~~~~~~~~~~~l~~----~~I~~LiviGG~gs~~~a~~l 112 (197)
+++++.++++.+++ .+.+++||.-|.+||.....+
T Consensus 86 t~~dw~~la~~I~~~~~~~~~~GiVVtHGTDTme~tA~~ 124 (349)
T TIGR00520 86 NEEVLLKLAKGINELLASDDYDGIVITHGTDTLEETAYF 124 (349)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEeCCcccHHHHHHH
Confidence 46666666655544 369999999999999876543
No 335
>PF01328 Peroxidase_2: Peroxidase, family 2; InterPro: IPR000028 Chloroperoxidase (CPO), also known as Heme haloperoxidase, is a ~250 residue heme-containing glycoprotein that is secreted by various fungi. Chloroperoxidase was first identified in Caldariomyces fumago where it catalyzes the hydrogen peroxide-dependent chlorination of cyclopentanedione during the biosynthesis of the antibiotic caldarioymcin. Additionally, heme haloperoxidase catalyzes the iodination and bromination of a wide range of substrates. Besides performing H2O2-dependent halogenation reactions, the enzyme catalyzes dehydrogenation reactions. Chloroperoxidase also functions as a catalase, facilitating the decomposition of hydrogen peroxide to oxygen and water. Furthermore, chloroperoxidase catalyzes P450-like oxygen insertion reactions. The capability of chloroperoxidase to perform these diverse reactions makes it one of the most versatile of all known heme proteins [, ]. Despite functional similarities with other heme enzymes, chloroperoxidase folds into a novel tertiary structure dominated by eight helical segments []. Structurally, chloroperoxidase is unique, but it shares features with both peroxidases and P450 enzymes. As in cytochrome P450 enzymes, the proximal heme ligand is a cysteine, but similar to peroxidases, the distal side of the heme is polar. However, unlike other peroxidases, the normally conserved distal arginine is lacking and the catalytic acid base is a glutamic acid and not a histidine [].; GO: 0004601 peroxidase activity; PDB: 2J5M_A 2J19_A 2CIW_A 2CJ0_A 2CIV_A 2CPO_A 1CPO_A 2CJ2_A 2J18_A 2CIZ_A ....
Probab=24.72 E-value=38 Score=30.32 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=6.6
Q ss_pred CChhhHhHHH
Q psy5987 9 SSSTGMNAAV 18 (197)
Q Consensus 9 G~apG~Na~i 18 (197)
|||||+|+..
T Consensus 48 gPCPgLNtLA 57 (317)
T PF01328_consen 48 GPCPGLNTLA 57 (317)
T ss_dssp -S-HHHHHHH
T ss_pred CCCccHHHHH
Confidence 7999999763
No 336
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=24.66 E-value=4e+02 Score=21.96 Aligned_cols=47 Identities=23% Similarity=0.141 Sum_probs=25.6
Q ss_pred eEECChhhhhhhhhhcCceecccCCCCccChhHHHHHHHHHHHhCCcEEEEecCC
Q psy5987 49 IVEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 49 ~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
..-+....++.+...||..+--... ...+.+.+.++ .+|+|++-||.
T Consensus 22 ~~~i~~~Yv~~i~~aG~~pv~ip~~------~~~~~~~~~l~--~idGlll~GG~ 68 (217)
T PF07722_consen 22 RSYIAASYVKAIEAAGGRPVPIPYD------ADDEELDELLD--RIDGLLLPGGG 68 (217)
T ss_dssp SEEEEHHHHHHHHHTT-EEEEE-SS--------HHHHHHHHH--CSSEEEE---S
T ss_pred HHHHhHHHHHHHHHcCCEEEEEccC------CCHHHHHHHHh--hcCEEEEcCCc
Confidence 3445566788888888875521111 12334455555 79999999999
No 337
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.59 E-value=4e+02 Score=21.87 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCC
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
++...+..+.+...++|++++...+
T Consensus 41 ~~~~~~~i~~~~~~~vdgiii~~~~ 65 (272)
T cd06313 41 AVKQVAAIENMASQGWDFIAVDPLG 65 (272)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3455677888889999999997643
No 338
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=24.55 E-value=1.1e+02 Score=23.22 Aligned_cols=27 Identities=7% Similarity=-0.149 Sum_probs=13.5
Q ss_pred EEEeCCCChhhHhHHHHHHHHHHHHcC
Q psy5987 3 AQVNKKSSSTGMNAAVRACVRMGIYLG 29 (197)
Q Consensus 3 aIl~sGG~apG~Na~i~~~v~~~~~~g 29 (197)
.|+..|.|||.+....-.-+-.++...
T Consensus 62 ~vvliGsD~P~l~~~~l~~A~~~L~~~ 88 (122)
T PF09837_consen 62 PVVLIGSDCPDLTPDDLEQAFEALQRH 88 (122)
T ss_dssp EEEEE-SS-TT--HHHHHHHHHHTTT-
T ss_pred cEEEEcCCCCCCCHHHHHHHHHHhccC
Confidence 477888999988876544444444333
No 339
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=24.49 E-value=94 Score=26.88 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
+.+.+++.++.+.+.+++++++.|..|-...
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~ 49 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEFFS 49 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCccc
Confidence 4566778888888889999998888775543
No 340
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=24.41 E-value=4e+02 Score=21.82 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=9.5
Q ss_pred CcE-EEEecCCCcHH
Q psy5987 94 ITN-LVVIGGDGSLT 107 (197)
Q Consensus 94 I~~-LiviGG~gs~~ 107 (197)
.|. +|.+|||+...
T Consensus 81 ~dlV~i~iG~ND~~~ 95 (259)
T cd01823 81 TDLVTITIGGNDLGF 95 (259)
T ss_pred CCEEEEEECccccch
Confidence 554 45679999754
No 341
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=24.40 E-value=1.5e+02 Score=24.59 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=25.6
Q ss_pred hhcCceecccCCCCccChhHHHHHHHHHHH---hCCcEEEEecCCCcH
Q psy5987 62 HKGGTVIGSARCSDFREKAGRLKAAKNLID---RGITNLVVIGGDGSL 106 (197)
Q Consensus 62 ~~gGs~LgssR~~~~~~~~~~~~~~~~l~~---~~I~~LiviGG~gs~ 106 (197)
-.|||.|.-.. ....+++..+++++.+++ .+-+-+++.|| |+.
T Consensus 6 KlGGs~itdk~-~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGg-G~~ 51 (231)
T cd04254 6 KLSGEALAGEN-GFGIDPEVLNRIAREIKEVVDLGVEVAIVVGG-GNI 51 (231)
T ss_pred EeCceEECCCC-CCCCCHHHHHHHHHHHHHHHHCCCcEEEEECC-Ccc
Confidence 35888884332 222245556777776664 34566788888 654
No 342
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=24.40 E-value=2.9e+02 Score=25.03 Aligned_cols=73 Identities=10% Similarity=0.060 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCc
Q psy5987 83 LKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGT 162 (197)
Q Consensus 83 ~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~Gf 162 (197)
+.+.+.+++++-+.++++...-+.....-+ +.+.+++ +++ .+++|+.|+ .+...+ .+.-||
T Consensus 76 ~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi----~~v~~~~----------~~~-~~~~vi~v~---t~gf~g-~~~~G~ 136 (410)
T cd01968 76 KAILEIIERYHPKAVFVYSTCVVALIGDDI----DAVCKTA----------SEK-FGIPVIPVH---SPGFVG-NKNLGN 136 (410)
T ss_pred HHHHHHHHhCCCCEEEEECCCchhhhccCH----HHHHHHH----------HHh-hCCCEEEEE---CCCccc-ChhHHH
Confidence 445666777899999888877654433222 2233322 222 267787776 234444 467999
Q ss_pred hhHHHHHHHHHH
Q psy5987 163 DSALHRIIEAID 174 (197)
Q Consensus 163 dTA~~~~~~~i~ 174 (197)
+.|++.+.+.+.
T Consensus 137 ~~a~~~l~~~l~ 148 (410)
T cd01968 137 KLACEALLDHVI 148 (410)
T ss_pred HHHHHHHHHHhc
Confidence 999988887654
No 343
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=24.35 E-value=47 Score=28.30 Aligned_cols=27 Identities=33% Similarity=0.318 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHH
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGAN 110 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~ 110 (197)
..++++.|++++||. ++||+.|+..|.
T Consensus 15 ~P~aa~VF~~~gIdf--Ccgg~~tLeeA~ 41 (224)
T PRK13276 15 YPKAADIFRSVGIDF--CCGGQVSIEAAS 41 (224)
T ss_pred CccHHHHHHHcCCCc--CCCCChhHHHHH
Confidence 456788999999995 999999999876
No 344
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=24.32 E-value=95 Score=24.06 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=27.4
Q ss_pred eecccCCCCccChhHHHHHHHHHHHhCC-cEEEEecCCCc
Q psy5987 67 VIGSARCSDFREKAGRLKAAKNLIDRGI-TNLVVIGGDGS 105 (197)
Q Consensus 67 ~LgssR~~~~~~~~~~~~~~~~l~~~~I-~~LiviGG~gs 105 (197)
++|-|--. ..+.+..+++++.|++.++ +..+++||.-.
T Consensus 53 iVglS~L~-t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~ 91 (128)
T cd02072 53 AILVSSLY-GHGEIDCKGLREKCDEAGLKDILLYVGGNLV 91 (128)
T ss_pred EEEEeccc-cCCHHHHHHHHHHHHHCCCCCCeEEEECCCC
Confidence 55544322 1245678899999999999 88899999854
No 345
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.21 E-value=4.4e+02 Score=22.22 Aligned_cols=43 Identities=26% Similarity=0.217 Sum_probs=31.7
Q ss_pred hhhhhcCceecccCCCCccChhHHHHHHHHHHHhCCcEEEEecCC
Q psy5987 59 SIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 59 ~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
.+...|+.+.+..+..+. ..++...+..+++.+-|.+++.+..
T Consensus 160 ~~~~~G~~vv~~~~~~~~--~~d~~~~v~~l~~~~pd~v~~~~~~ 202 (312)
T cd06346 160 AFEALGGTVTNVVAHEEG--KSSYSSEVAAAAAGGPDALVVIGYP 202 (312)
T ss_pred HHHHcCCEEEEEEeeCCC--CCCHHHHHHHHHhcCCCEEEEeccc
Confidence 345678888877766543 4567888999999999998877543
No 346
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=24.05 E-value=2.5e+02 Score=19.45 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
..+.+.+..+++++| |+++|-.+
T Consensus 90 ~~~~i~~~~~~~~~d-liv~G~~~ 112 (140)
T PF00582_consen 90 VADAIIEFAEEHNAD-LIVMGSRG 112 (140)
T ss_dssp HHHHHHHHHHHTTCS-EEEEESSS
T ss_pred cchhhhhccccccce-eEEEeccC
Confidence 457888889999999 77788777
No 347
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=23.94 E-value=1.3e+02 Score=24.30 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=17.8
Q ss_pred HHHhCCcEEEEecCCCcHHHHH
Q psy5987 89 LIDRGITNLVVIGGDGSLTGAN 110 (197)
Q Consensus 89 l~~~~I~~LiviGG~gs~~~a~ 110 (197)
+++++.|++|+-||-|+...+.
T Consensus 39 ~~~~~~d~iils~GPg~p~~~~ 60 (187)
T PRK08007 39 IDALKPQKIVISPGPCTPDEAG 60 (187)
T ss_pred HHhcCCCEEEEcCCCCChHHCC
Confidence 4556889999999999987654
No 348
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=23.47 E-value=6.2e+02 Score=23.76 Aligned_cols=135 Identities=14% Similarity=0.165 Sum_probs=83.9
Q ss_pred hhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhHHHHH-HHHH
Q psy5987 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKA-AKNL 89 (197)
Q Consensus 11 apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~-~~~l 89 (197)
||-==.||.+..+.++..+.-| .++.|..+|..+ ||- =| .++.++... .+.-
T Consensus 23 Csahp~VieAAl~~a~~~~~pv----------------LiEAT~NQVnq~---GGY-TG-------mtP~dF~~~V~~iA 75 (426)
T PRK15458 23 CSAHPLVLEAAIRYALANDSPL----------------LIEATSNQVDQF---GGY-TG-------MTPADFRGFVCQLA 75 (426)
T ss_pred cCCCHHHHHHHHHHHhhcCCcE----------------EEEecccccccc---CCc-CC-------CCHHHHHHHHHHHH
Confidence 3333457777777777666433 467777777776 665 22 245666554 4455
Q ss_pred HHhCCcE-EEEecCCC--c-------HHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCC
Q psy5987 90 IDRGITN-LVVIGGDG--S-------LTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMT 159 (197)
Q Consensus 90 ~~~~I~~-LiviGG~g--s-------~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s 159 (197)
++.+++. .+++|||- . ...|...++ +|++ .+.+ -+..-+++=.|++ ..+.+..
T Consensus 76 ~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~-------~li~-----ayV~---AGF~kIHLD~Sm~--cagdp~p 138 (426)
T PRK15458 76 DSLNFPQEALILGGDHLGPNRWQNLPAAQAMANAD-------DLIK-----SYVA---AGFKKIHLDCSMS--CADDPIP 138 (426)
T ss_pred HHcCCChhhEEeecCCCCCccccCCCHHHHHHHHH-------HHHH-----HHHH---cCCceEEecCCCC--CCCCCCC
Confidence 6778887 89999983 1 233333333 2221 2222 2667888887877 6666667
Q ss_pred CCchhHHHHHHHHHHHHHHhh----ccCCcEEEE
Q psy5987 160 IGTDSALHRIIEAIDAIVSTA----YSHQRTFIM 189 (197)
Q Consensus 160 ~GfdTA~~~~~~~i~~l~~~a----~S~~rv~iv 189 (197)
+.-++.+++.++.+...-.++ ...+-+|+|
T Consensus 139 L~d~~vA~Raa~L~~~aE~~a~~~~~~~~~vYvI 172 (426)
T PRK15458 139 LTDEIVAERAARLAKIAEETCREHFGESDLVYVI 172 (426)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 777999999998888654443 223567888
No 349
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=23.47 E-value=1.1e+02 Score=24.86 Aligned_cols=21 Identities=19% Similarity=0.082 Sum_probs=16.7
Q ss_pred HHHhCCcEEEEecCCCcHHHH
Q psy5987 89 LIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 89 l~~~~I~~LiviGG~gs~~~a 109 (197)
++.++.|++|+-||-++....
T Consensus 39 ~~~~~~d~iIlsgGP~~p~~~ 59 (195)
T PRK07649 39 IENMKPDFLMISPGPCSPNEA 59 (195)
T ss_pred HhhCCCCEEEECCCCCChHhC
Confidence 345688999999999987654
No 350
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=23.42 E-value=3.1e+02 Score=20.99 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=16.4
Q ss_pred HhCCcEE-EEecCCCcHH---HHHHHHHHhHHHH
Q psy5987 91 DRGITNL-VVIGGDGSLT---GANLFRQEWPELL 120 (197)
Q Consensus 91 ~~~I~~L-iviGG~gs~~---~a~~l~~~~~~~l 120 (197)
..+-|.+ |.+|.|++.. ....+.+.+..++
T Consensus 65 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~i 98 (185)
T cd01832 65 ALRPDLVTLLAGGNDILRPGTDPDTYRADLEEAV 98 (185)
T ss_pred hcCCCEEEEeccccccccCCCCHHHHHHHHHHHH
Confidence 4577766 4578888743 3444444433333
No 351
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=23.26 E-value=1e+02 Score=26.70 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
+.+.+++.++.+.+.++++|++.|..|-..
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~~ 53 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEFF 53 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCcc
Confidence 456778888888888999999888777543
No 352
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=23.20 E-value=4e+02 Score=22.97 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCe-EECChhhhhhhhhhcCceecccCCCCccChhHHHHHHHHHHHh--
Q psy5987 16 AAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNI-VEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDR-- 92 (197)
Q Consensus 16 a~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~-~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~-- 92 (197)
...+.+++++...|++-+++... +. .+ ..+...-...+...|+.+.+...+.+ ...++...+..++..
T Consensus 110 ~~~~~~~~~~~~~g~k~vaii~~-----~~--~~g~~~~~~f~~~~~~~G~~vv~~~~~~~--~~~d~~~~i~~i~~~~~ 180 (336)
T cd06339 110 DEARRAAEYARSQGKRRPLVLAP-----DG--AYGQRVADAFRQAWQQLGGTVVAIESYDP--SPTDLSDAIRRLLGVDD 180 (336)
T ss_pred HHHHHHHHHHHhcCccceEEEec-----CC--hHHHHHHHHHHHHHHHcCCceeeeEecCC--CHHHHHHHHHHHhcccc
Confidence 44566777776667755555432 11 11 11111112345567888887776654 456788888888877
Q ss_pred -------------------CCcEEEEecCCC
Q psy5987 93 -------------------GITNLVVIGGDG 104 (197)
Q Consensus 93 -------------------~I~~LiviGG~g 104 (197)
+.|.+++++-.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~ 211 (336)
T cd06339 181 SEQRIAQLKSLESEPRRRQDIDAIDAVALPD 211 (336)
T ss_pred chhhhhhhhhcccCccccCCCCcEEEEecCh
Confidence 899998877654
No 353
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=23.16 E-value=1.7e+02 Score=23.69 Aligned_cols=43 Identities=21% Similarity=0.073 Sum_probs=31.7
Q ss_pred EEEeCCCChhhHhHH-----HHHHHHHHHHcCCEEEEEcCcchhhccC
Q psy5987 3 AQVNKKSSSTGMNAA-----VRACVRMGIYLGCKVFFIKEGYQGMVDG 45 (197)
Q Consensus 3 aIl~sGG~apG~Na~-----i~~~v~~~~~~g~~v~g~~~G~~GL~~~ 45 (197)
||+..||+...+... +..+++.+...+.-++|+-.|+.=|.+.
T Consensus 41 giii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 88 (189)
T PRK13525 41 GLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKE 88 (189)
T ss_pred EEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 788999987665432 2345666677888999999999877653
No 354
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=23.10 E-value=3.4e+02 Score=25.11 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=64.6
Q ss_pred EEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchh----------------hccCCCCeEECChhhhhhhhhhc--
Q psy5987 3 AQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQG----------------MVDGGDNIVEANWSSVSSIIHKG-- 64 (197)
Q Consensus 3 aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~G----------------L~~~~~~~~~l~~~~v~~~~~~g-- 64 (197)
.|+++.|-.||+.-+|+++++. |-.|+--.-=|.- |.++ ..-.+++.+.++.-...+
T Consensus 85 ~i~~~p~VVpgi~~~I~~~T~~----gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~-~~~y~iD~~~LE~~~~~~~v 159 (388)
T COG1168 85 WIVFVPGVVPGISLAIRALTKP----GDGVVIQTPVYPPFYNAIKLNGRKVIENPLVED-DGRYEIDFDALEKAFVDERV 159 (388)
T ss_pred eEEEcCcchHhHHHHHHHhCcC----CCeeEecCCCchHHHHHHhhcCcEEEecccccc-CCcEEecHHHHHHHHhcCCc
Confidence 4789999999999999998764 3333221111111 1111 123445666666544443
Q ss_pred CceecccCCCCc---cChhHHHHHHHHHHHhCCcE-------EEEecCCCcHHHHHHHHH
Q psy5987 65 GTVIGSARCSDF---REKAGRLKAAKNLIDRGITN-------LVVIGGDGSLTGANLFRQ 114 (197)
Q Consensus 65 Gs~LgssR~~~~---~~~~~~~~~~~~l~~~~I~~-------LiviGG~gs~~~a~~l~~ 114 (197)
..+|-++.-.|. .+++++.++.+-|++|++.- =++.+|. +...++.+++
T Consensus 160 kl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~-~h~~~a~ls~ 218 (388)
T COG1168 160 KLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH-KHIPFASLSE 218 (388)
T ss_pred cEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC-CccchhhcCh
Confidence 566666655554 36889999999999998753 3567776 4545554544
No 355
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=22.97 E-value=1.4e+02 Score=27.02 Aligned_cols=42 Identities=12% Similarity=-0.069 Sum_probs=29.9
Q ss_pred EEEeCCCC-hhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhcc
Q psy5987 3 AQVNKKSS-STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVD 44 (197)
Q Consensus 3 aIl~sGG~-apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~ 44 (197)
||+.|||| .|---.....+++.+...+.-++||--|.+=|..
T Consensus 221 GIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~ 263 (360)
T PRK12564 221 GVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLAL 263 (360)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHH
Confidence 78999997 3421134456667766678899999999887654
No 356
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=22.65 E-value=97 Score=22.34 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCcEEEEecC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGG 102 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG 102 (197)
++++.+.|++.++|++++-..
T Consensus 2 l~rl~~~m~~~gid~lll~~~ 22 (132)
T PF01321_consen 2 LERLRAAMAEAGIDALLLTSP 22 (132)
T ss_dssp HHHHHHHHHHTT-SEEEEESH
T ss_pred HHHHHHHHHHCCCCEEEEcCh
Confidence 468899999999999999876
No 357
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=22.61 E-value=1.6e+02 Score=28.42 Aligned_cols=22 Identities=27% Similarity=0.116 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHhCCcEEEEe
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVI 100 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~Livi 100 (197)
.+..+++.+.|++++|.+=+-+
T Consensus 423 ~~~~~~~~~~l~~~g~~~~~~v 444 (577)
T PLN02948 423 LPTMKDAAEILDSFGVPYEVTI 444 (577)
T ss_pred HHHHHHHHHHHHHcCCCeEEEE
Confidence 3456778888888888765443
No 358
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=22.61 E-value=1.4e+02 Score=26.26 Aligned_cols=80 Identities=16% Similarity=0.122 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCc-ee--cccCCCCccChhHHHHHHHHHHHhC
Q psy5987 17 AVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGT-VI--GSARCSDFREKAGRLKAAKNLIDRG 93 (197)
Q Consensus 17 ~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs-~L--gssR~~~~~~~~~~~~~~~~l~~~~ 93 (197)
.++..++.+...+...+-+-.|-.|.... . +.+-...+.+.-|. .+ -|+|.. ++.+++.....+.+++
T Consensus 40 ~l~~~~~~l~~~~p~fvsVT~~~~~~~~~--r----~~~~a~~i~~~~g~~~i~Hltcr~~---n~~~l~~~L~~~~~~G 110 (296)
T PRK09432 40 TLWNSIDRLSSLKPKFVSVTYGANSGERD--R----THSIIKGIKKRTGLEAAPHLTCIDA---TPDELRTIAKDYWNNG 110 (296)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCcHHH--H----HHHHHHHHHHHhCCCeeeecccCCC---CHHHHHHHHHHHHHCC
Confidence 34455566666666666666665553322 1 22223444444343 22 456654 5678888889999999
Q ss_pred CcEEEEecCCCc
Q psy5987 94 ITNLVVIGGDGS 105 (197)
Q Consensus 94 I~~LiviGG~gs 105 (197)
|+.+++++||..
T Consensus 111 I~niLaLrGD~p 122 (296)
T PRK09432 111 IRHIVALRGDLP 122 (296)
T ss_pred CCEEEEeCCCCC
Confidence 999999999953
No 359
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.52 E-value=2.5e+02 Score=23.63 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
++......+++..+++|++++...+.
T Consensus 43 ~~~q~~~i~~l~~~~vdgiii~~~~~ 68 (303)
T cd01539 43 QSTQNEQIDTALAKGVDLLAVNLVDP 68 (303)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCch
Confidence 34456778888999999999987663
No 360
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=22.40 E-value=3.2e+02 Score=20.60 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHh
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEW 116 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~ 116 (197)
....+.+.+ ..+-...++||.|=-.-....|.+.|
T Consensus 48 Rm~~a~~~~-~~g~~~vvliGsD~P~l~~~~l~~A~ 82 (122)
T PF09837_consen 48 RMANAFQQA-ARGYEPVVLIGSDCPDLTPDDLEQAF 82 (122)
T ss_dssp HHHHHHHHH-HTT-SEEEEE-SS-TT--HHHHHHHH
T ss_pred HHHHHHHHH-HcCCCcEEEEcCCCCCCCHHHHHHHH
Confidence 345566666 67888999999999998888888765
No 361
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=22.29 E-value=2.8e+02 Score=20.83 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=29.6
Q ss_pred CeEECChhhhhhhhhhcC-ceecccCCCCccChhHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 48 NIVEANWSSVSSIIHKGG-TVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 48 ~~~~l~~~~v~~~~~~gG-s~LgssR~~~~~~~~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
++.+-+-..+..+...-| ........+ ++++..++.++.+.+ +.|-+++.||-+-
T Consensus 15 ~i~d~n~~~l~~~l~~~G~~v~~~~~v~--Dd~~~i~~~i~~~~~-~~DlvittGG~g~ 70 (133)
T cd00758 15 QIEDTNGPALEALLEDLGCEVIYAGVVP--DDADSIRAALIEASR-EADLVLTTGGTGV 70 (133)
T ss_pred ceEEchHHHHHHHHHHCCCEEEEeeecC--CCHHHHHHHHHHHHh-cCCEEEECCCCCC
Confidence 566666656666544444 333222222 234445554444433 3899999999763
No 362
>PF02177 APP_N: Amyloid A4 N-terminal heparin-binding; InterPro: IPR015849 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. This entry represents a heparin-binding domain found at the N-terminal of the extracellular domain, which is itself found at the N-terminal of amyloidogenic glycoproteins such as amyloid-beta precursor protein (APP, or A4). The core of the heparin-binding domain has an unusual disulphide-rich fold, consisting of a beta-x-alpha-beta-loop-beta topology []. More information about these protein can be found at Protein of the Month: Amyloid-beta Precursor Protein [].; GO: 0005488 binding, 0016021 integral to membrane; PDB: 3KTM_E 1MWP_A 2FKL_A 1OWT_A.
Probab=22.25 E-value=1.1e+02 Score=23.09 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=14.6
Q ss_pred HHHHhhcCCceEEEe-----eeeccc
Q psy5987 131 KDQREKYCHLHIAGL-----VGSIDN 151 (197)
Q Consensus 131 ~~~~~~~~~i~vvgi-----PkTIDN 151 (197)
+++++.|++++|..| |.+|+|
T Consensus 42 ~YCrkvYP~l~ItnVvea~~~v~i~~ 67 (102)
T PF02177_consen 42 KYCRKVYPELQITNVVEASQPVTISN 67 (102)
T ss_dssp HHHHHHSTTS-EEEEEE-SS-EEE--
T ss_pred HHHHHhCCCCceeEEEECCcceeccc
Confidence 689999999999887 566665
No 363
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=22.24 E-value=1.5e+02 Score=25.52 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=46.1
Q ss_pred HHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCc--ee-cccCCCCccChhHHHHHHHHHHHhCCcEEE
Q psy5987 22 VRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGT--VI-GSARCSDFREKAGRLKAAKNLIDRGITNLV 98 (197)
Q Consensus 22 v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs--~L-gssR~~~~~~~~~~~~~~~~l~~~~I~~Li 98 (197)
++.+...+.+-+-+-+|-.|-. ..-+.+-...+.+.-|. +. -|+|.. ++..++.....+.+++|+.++
T Consensus 21 ~~~l~~~~pd~isvT~~~~~~~------~~~t~~~a~~l~~~~g~~~i~Hlt~r~~---n~~~l~~~L~~~~~~Gi~nvL 91 (272)
T TIGR00676 21 VDRLSPLDPDFVSVTYGAGGST------RDRTVRIVRRIKKETGIPTVPHLTCIGA---TREEIREILREYRELGIRHIL 91 (272)
T ss_pred HHHHhcCCCCEEEeccCCCCCc------HHHHHHHHHHHHHhcCCCeeEEeeecCC---CHHHHHHHHHHHHHCCCCEEE
Confidence 3444444556666666555411 22223333445544443 22 455643 567888888899999999999
Q ss_pred EecCCCc
Q psy5987 99 VIGGDGS 105 (197)
Q Consensus 99 viGG~gs 105 (197)
+++||.+
T Consensus 92 ~l~GD~~ 98 (272)
T TIGR00676 92 ALRGDPP 98 (272)
T ss_pred EeCCCCC
Confidence 9999987
No 364
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=22.18 E-value=1.7e+02 Score=23.68 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=0.0
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEe
Q psy5987 93 GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGL 145 (197)
Q Consensus 93 ~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgi 145 (197)
+.|+||+-||.++......-...|.+.|+++++. +.++++|
T Consensus 36 ~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~------------g~pilGI 76 (184)
T TIGR03800 36 EIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILS------------GLPVFGT 76 (184)
T ss_pred cCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHc------------CCcEEEE
No 365
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=22.15 E-value=3.5e+02 Score=21.18 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQ 114 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~ 114 (197)
+++.++++++.+.+- +.++++|--.|...|..+..
T Consensus 19 ~~~~l~~~~~~i~~a--~~I~i~G~G~S~~~A~~~~~ 53 (179)
T cd05005 19 DEEELDKLISAILNA--KRIFVYGAGRSGLVAKAFAM 53 (179)
T ss_pred CHHHHHHHHHHHHhC--CeEEEEecChhHHHHHHHHH
Confidence 467788888888755 67888887667666655543
No 366
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=22.11 E-value=2.3e+02 Score=23.44 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCC-------------cHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEee-
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDG-------------SLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLV- 146 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~g-------------s~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiP- 146 (197)
.+.+.++.|..++...+++++=-. .-...+.+.++|-+.|++++ .+.++++++.+++.+.
T Consensus 132 ~~~~~i~~l~~~g~~~i~v~~~p~~~~~P~~~~~~~~~~~~~~~~~~~~N~~L~~~l------~~l~~~~~~~~i~~~D~ 205 (270)
T cd01846 132 NLFQALQRLYAAGARNFLVLNLPDLGLTPAFQAQGDAVAARATALTAAYNAKLAEKL------AELKAQHPGVNILLFDT 205 (270)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCCcccccCCcccHHHHHHHHHHHHHHHHHHH------HHHHHhCCCCeEEEEEh
Confidence 456677888888998877763211 11356667788888888777 3556666677777764
Q ss_pred eecccCCCCCCCCCCchhHHHH
Q psy5987 147 GSIDNDFCGTDMTIGTDSALHR 168 (197)
Q Consensus 147 kTIDNDi~g~d~s~GfdTA~~~ 168 (197)
-++-.|+--.....||......
T Consensus 206 ~~~~~~~~~~p~~yGf~~~~~~ 227 (270)
T cd01846 206 NALFNDILDNPAAYGFTNVTDP 227 (270)
T ss_pred HHHHHHHHhCHHhcCCCcCcch
Confidence 1122222222345566544333
No 367
>KOG0330|consensus
Probab=22.10 E-value=1.7e+02 Score=27.57 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHh----CCcEEEEecCCCcHHHHHHHHH
Q psy5987 79 KAGRLKAAKNLIDR----GITNLVVIGGDGSLTGANLFRQ 114 (197)
Q Consensus 79 ~~~~~~~~~~l~~~----~I~~LiviGG~gs~~~a~~l~~ 114 (197)
.|--.+|.+.++++ ++..-+++||.+.+..|+.|++
T Consensus 139 RELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~k 178 (476)
T KOG0330|consen 139 RELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSK 178 (476)
T ss_pred HHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhc
Confidence 34456677777777 7889999999999999998874
No 368
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=22.09 E-value=1.1e+02 Score=23.72 Aligned_cols=23 Identities=22% Similarity=0.053 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHhCCcEEEEec
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIG 101 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviG 101 (197)
-.+++.+.+.|++.+++-|+||=
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~ 57 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQ 57 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-
T ss_pred HHHHHHHHHHHHHcCCceEEEec
Confidence 45789999999999999999973
No 369
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=22.04 E-value=1.1e+02 Score=26.65 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=24.8
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
+.+.+++.++.+.+.+++++++.|..|-...
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~ 56 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGEFFS 56 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCccc
Confidence 4567788888888899999999888776543
No 370
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=22.01 E-value=1.8e+02 Score=26.60 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
.+-+.++++.|++.+||.|+-+||---+.++..++
T Consensus 71 ~~Tv~kaV~i~kee~idflLAVGGGSViD~tK~IA 105 (384)
T COG1979 71 LETLMKAVEICKEENIDFLLAVGGGSVIDGTKFIA 105 (384)
T ss_pred HHHHHHHHHHHHHcCceEEEEecCcchhhhHHHHH
Confidence 45678999999999999999999987777766554
No 371
>PRK10116 universal stress protein UspC; Provisional
Probab=22.00 E-value=3.2e+02 Score=19.91 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
.+.+.+..++.++| |+++|-.+-
T Consensus 91 ~~~I~~~a~~~~~D-LiV~g~~~~ 113 (142)
T PRK10116 91 SEHILEVCRKHHFD-LVICGNHNH 113 (142)
T ss_pred HHHHHHHHHHhCCC-EEEEcCCcc
Confidence 46788899999999 677787764
No 372
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=21.85 E-value=4e+02 Score=20.92 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=46.0
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++....+.|-....+.++.+.+...|+++.-... .. +++.
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~----------------------------------~~----~~~~ 43 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAAREAGYSVLLCNS----------------------------------DE----DPEK 43 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHcCCEEEEEcC----------------------------------CC----CHHH
Confidence 677777777888888888888888776665542210 00 1233
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
.....+.+...++|++++.+.+.+...
T Consensus 44 ~~~~~~~~~~~~~d~iii~~~~~~~~~ 70 (264)
T cd06267 44 EREALELLLSRRVDGIILAPSRLDDEL 70 (264)
T ss_pred HHHHHHHHHHcCcCEEEEecCCcchHH
Confidence 455666777889999999888866543
No 373
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=21.67 E-value=5e+02 Score=21.98 Aligned_cols=43 Identities=16% Similarity=0.015 Sum_probs=29.5
Q ss_pred hhhhcCceecccCCCCccChhHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 60 IIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 60 ~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
+...|+.+....+..+ ...++...++.+++.+.|.+++.+...
T Consensus 165 ~~~~g~~v~~~~~~~~--~~~d~~~~v~~l~~~~~d~i~~~~~~~ 207 (345)
T cd06338 165 AEAAGLEVVYDETYPP--GTADLSPLISKAKAAGPDAVVVAGHFP 207 (345)
T ss_pred HHHcCCEEEEEeccCC--CccchHHHHHHHHhcCCCEEEECCcch
Confidence 4556677776665543 235677888888989999887766543
No 374
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=21.63 E-value=4.7e+02 Score=27.15 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCcEEEE-ecCCCcHHHHHHH
Q psy5987 81 GRLKAAKNLIDRGITNLVV-IGGDGSLTGANLF 112 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~Liv-iGG~gs~~~a~~l 112 (197)
..+.+.+.++++++|++++ .||.-.+..+..|
T Consensus 617 ~~e~v~~i~~~e~~dgVi~~~g~~~~~~la~~l 649 (1066)
T PRK05294 617 TLEDVLEIIEKEKPKGVIVQFGGQTPLKLAKAL 649 (1066)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCchhHHHHHHHH
Confidence 3566777788889998887 6766555444433
No 375
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=21.55 E-value=1e+02 Score=26.30 Aligned_cols=55 Identities=11% Similarity=0.196 Sum_probs=35.5
Q ss_pred Chhhhhhhh-hhcCceecccCCCCcc--Ch---hHHHHHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 53 NWSSVSSII-HKGGTVIGSARCSDFR--EK---AGRLKAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 53 ~~~~v~~~~-~~gGs~LgssR~~~~~--~~---~~~~~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
.|.+++... .+=|-+||||.+-... ++ .-.+.+++..+.-+|+.|.+-|.|++.+
T Consensus 47 i~~~~~~lP~r~vgvVLGtsky~~~g~~N~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~s 107 (235)
T COG2949 47 IYDDIQDLPARQVGVVLGTSKYLAKGPPNRYYTYRIDAAIALYKAGKVNYLLLSGDNATVS 107 (235)
T ss_pred cccChhhCCccceEEEEeccccccCCCccHhHHHHHHHHHHHHhcCCeeEEEEecCCCccc
Confidence 344444443 3337899998543321 11 1235567777888999999999998765
No 376
>PRK15005 universal stress protein F; Provisional
Probab=21.32 E-value=1.6e+02 Score=21.69 Aligned_cols=21 Identities=5% Similarity=0.071 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~ 103 (197)
.+.+.+..+++++| |||+|--
T Consensus 96 ~~~I~~~a~~~~~D-LIV~Gs~ 116 (144)
T PRK15005 96 KDRILELAKKIPAD-MIIIASH 116 (144)
T ss_pred HHHHHHHHHHcCCC-EEEEeCC
Confidence 46788888999999 6666743
No 377
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=21.31 E-value=3.9e+02 Score=24.84 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=25.4
Q ss_pred ChhHHHHHHHHHHHh---CCcEEEEecCCCcHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDR---GITNLVVIGGDGSLTGANL 111 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~---~I~~LiviGG~gs~~~a~~ 111 (197)
++++..++++.+++. +.|++||.=|.+||.-.+.
T Consensus 134 tp~~W~~La~~I~~~~~~~~dGvVVtHGTDTM~yTA~ 170 (419)
T PRK04183 134 TPEYWVEIAEAVYEEIKNGADGVVVAHGTDTMHYTAA 170 (419)
T ss_pred CHHHHHHHHHHHHHHhhccCCeEEEecCCchHHHHHH
Confidence 456666666665554 7999999999999987543
No 378
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=21.27 E-value=1.6e+02 Score=22.42 Aligned_cols=27 Identities=19% Similarity=0.494 Sum_probs=18.3
Q ss_pred HHHHHhHHHHHHHHhcCCCcHHHHhhc
Q psy5987 111 LFRQEWPELLDQLLKDGSITKDQREKY 137 (197)
Q Consensus 111 ~l~~~~~~~l~~l~~~~~~~~~~~~~~ 137 (197)
.+.+...++.+||+++|+++++..+++
T Consensus 21 ~~~ek~~klvDelVkkGeln~eEak~~ 47 (108)
T COG3937 21 ETAEKVQKLVDELVKKGELNAEEAKRF 47 (108)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 344444567888888888887666544
No 379
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=21.23 E-value=1.3e+02 Score=26.17 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=27.8
Q ss_pred cCCCCccChhHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 71 sR~~~~~~~~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
.|.|...++++.+++++.|+.-+.|++++=.=.|
T Consensus 91 trdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAG 124 (272)
T COG2894 91 TRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAG 124 (272)
T ss_pred ccCcccCCHHHHHHHHHHHHhcCCCEEEecCcch
Confidence 4777777899999999999999999988754433
No 380
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=21.17 E-value=87 Score=26.26 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=29.2
Q ss_pred eEECChhhhhhhhhhcCc-eecccCCCCccChhHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 49 IVEANWSSVSSIIHKGGT-VIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 49 ~~~l~~~~v~~~~~~gGs-~LgssR~~~~~~~~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
+.+-+.+.+..++..|.. .+=|.|.. ..+.+.+++++++. .+|+.||+
T Consensus 20 i~~~~~~ai~~l~~~G~~~~iaTGR~~--------~~~~~~~~~l~~~~-~~I~~NGa 68 (272)
T PRK15126 20 LGEKTLSTLARLRERDITLTFATGRHV--------LEMQHILGALSLDA-YLITGNGT 68 (272)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCH--------HHHHHHHHHcCCCC-cEEecCCc
Confidence 333345567777778765 56777754 24455667788874 34555665
No 381
>PF05054 DUF673: Protein of unknown function (DUF673); InterPro: IPR007748 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf109; it is a family of uncharacterised viral proteins.
Probab=21.11 E-value=2e+02 Score=26.30 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=45.1
Q ss_pred eEECChhhhhhhhhhcCceecccCCCCccChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHH
Q psy5987 49 IVEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELL 120 (197)
Q Consensus 49 ~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l 120 (197)
+.+|+||.++++. .|| .++.+ ...+...++.+...++-++|+ +.++++.+.+-+.|..++
T Consensus 209 ~keL~wE~~RRll-kg~--~~~~C--~~~nr~Sl~Yik~a~elL~i~-------~~~i~sv~~~v~~F~~LI 268 (357)
T PF05054_consen 209 YKELKWERTRRLL-KGD--VSNQC--NIVNRPSLQYIKDAQELLGID-------DSSIQSVHDLVRIFQPLI 268 (357)
T ss_pred HHHhhhHHHHHHH-cCC--CCCcC--ceechHHHHHHHHHHHHhCCC-------cchHHHHHHHHHHHHHHh
Confidence 6788999999887 566 33333 233667888999999999999 668888888888875554
No 382
>KOG3997|consensus
Probab=21.11 E-value=5.6e+02 Score=22.30 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=46.1
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHHHHHHHHHHHHHHhhccCCcEE
Q psy5987 108 GANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTF 187 (197)
Q Consensus 108 ~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~~~~~~~i~~l~~~a~S~~rv~ 187 (197)
.+.++-+.+++++++| +.|++.+. ++.|=-||+...-+-.-.++.+++.|+...... ..=+.
T Consensus 81 d~ek~eks~~~~vDdl-------~Rce~LGI---------gmYN~HPGSt~~~~kee~l~~ia~~in~a~eet--k~V~i 142 (281)
T KOG3997|consen 81 DAEKLEKSRECFVDDL-------QRCEKLGI---------GMYNFHPGSTVGKEKEECLTTIAETINFAVEET--KNVII 142 (281)
T ss_pred cHHHHHHHHHHHHHHH-------HHHHHhCc---------eeeecCCCccccccHHHHHHHHHHHHHHHHHhc--cceEE
Confidence 3567777888899998 45665432 455645776555566667888888888776654 23457
Q ss_pred EEEecCC
Q psy5987 188 IMEVMGR 194 (197)
Q Consensus 188 ivE~mGr 194 (197)
++|.|-.
T Consensus 143 vlEnMAG 149 (281)
T KOG3997|consen 143 VLENMAG 149 (281)
T ss_pred EeecccC
Confidence 8888854
No 383
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=21.10 E-value=1.6e+02 Score=25.69 Aligned_cols=79 Identities=16% Similarity=0.075 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCc-ee--cccCCCCccChhHHHHHHHHHHHhCC
Q psy5987 18 VRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGT-VI--GSARCSDFREKAGRLKAAKNLIDRGI 94 (197)
Q Consensus 18 i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs-~L--gssR~~~~~~~~~~~~~~~~l~~~~I 94 (197)
++..++.+...+..-+-+-+|-.|- ..+-+-.-...+.+.-|. .+ -|+|.. +...++..+..+...+|
T Consensus 18 ~~~~~~~l~~~~p~fvsvT~~~~~~------~~~~t~~~~~~l~~~~g~~~i~Hltcr~~---~~~~l~~~L~~~~~~Gi 88 (281)
T TIGR00677 18 LYERMDRMVASGPLFIDITWGAGGT------TAELTLTIASRAQNVVGVETCMHLTCTNM---PIEMIDDALERAYSNGI 88 (281)
T ss_pred HHHHHHHHhhCCCCEEEeccCCCCc------chhhHHHHHHHHHHhcCCCeeEEeccCCC---CHHHHHHHHHHHHHCCC
Confidence 3444444444455556666665441 122233344555555453 22 455654 35678888889999999
Q ss_pred cEEEEecCCCc
Q psy5987 95 TNLVVIGGDGS 105 (197)
Q Consensus 95 ~~LiviGG~gs 105 (197)
+.+++++||..
T Consensus 89 ~niLal~GD~p 99 (281)
T TIGR00677 89 QNILALRGDPP 99 (281)
T ss_pred CEEEEECCCCC
Confidence 99999999984
No 384
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=21.07 E-value=5e+02 Score=21.78 Aligned_cols=35 Identities=9% Similarity=0.025 Sum_probs=27.8
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEc
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIK 36 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~ 36 (197)
||++...-..|-.+.++.++-+.+...|+++.-+.
T Consensus 64 Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~ 98 (328)
T PRK11303 64 IGLIIPDLENTSYARIAKYLERQARQRGYQLLIAC 98 (328)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe
Confidence 67887766678888899999999888998776553
No 385
>PRK06849 hypothetical protein; Provisional
Probab=20.93 E-value=4.9e+02 Score=23.13 Aligned_cols=23 Identities=9% Similarity=-0.106 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
-.+.+.+.++++++|.+|-..++
T Consensus 64 ~~~~L~~i~~~~~id~vIP~~e~ 86 (389)
T PRK06849 64 YIQALLSIVQRENIDLLIPTCEE 86 (389)
T ss_pred HHHHHHHHHHHcCCCEEEECChH
Confidence 35667788888999877665543
No 386
>PRK06490 glutamine amidotransferase; Provisional
Probab=20.92 E-value=1.3e+02 Score=25.48 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=10.6
Q ss_pred CCcEEEEecCCCcHH
Q psy5987 93 GITNLVVIGGDGSLT 107 (197)
Q Consensus 93 ~I~~LiviGG~gs~~ 107 (197)
+.|++|+.||..+..
T Consensus 52 ~~dgvii~Ggp~~~~ 66 (239)
T PRK06490 52 DHAGAVIFGGPMSAN 66 (239)
T ss_pred ccCEEEEECCCCCCC
Confidence 467788888777653
No 387
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.85 E-value=5.1e+02 Score=21.73 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=41.0
Q ss_pred eEEEeCCC-ChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 2 TAQVNKKS-SSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 2 ~aIl~sGG-~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
||++...- ..|-...++.++-+.+...|++++-. ++.. +.+
T Consensus 2 Igvi~~~~~~~~~~~~~~~gi~~~~~~~g~~v~~~----------------------------------~~~~----~~~ 43 (305)
T cd06324 2 VVFLNPGKSDEPFWNSVARFMQAAADDLGIELEVL----------------------------------YAER----DRF 43 (305)
T ss_pred eEEecCCCCCCcHHHHHHHHHHHHHHhcCCeEEEE----------------------------------eCCC----CHH
Confidence 56666654 56666777777777776666655322 1100 223
Q ss_pred HHHHHHHHHHHh--CCcEEEEecCC
Q psy5987 81 GRLKAAKNLIDR--GITNLVVIGGD 103 (197)
Q Consensus 81 ~~~~~~~~l~~~--~I~~LiviGG~ 103 (197)
.....++.+... ++|++|+...+
T Consensus 44 ~~~~~i~~~~~~~~~vdgiIi~~~~ 68 (305)
T cd06324 44 LMLQQARTILQRPDKPDALIFTNEK 68 (305)
T ss_pred HHHHHHHHHHHhccCCCEEEEcCCc
Confidence 445678888888 99999997654
No 388
>PRK13668 hypothetical protein; Provisional
Probab=20.85 E-value=4.6e+02 Score=23.01 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCC---------cEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccC
Q psy5987 82 RLKAAKNLIDRGI---------TNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 82 ~~~~~~~l~~~~I---------~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDND 152 (197)
.+.+..||+++.. +.++++==++.+.++..|.+. +|+++ +++-.+=.|++||.- |
T Consensus 146 ~e~Al~NLr~l~~~~k~d~v~Gn~~y~~~~~DgYDASRiL~~~---~L~~~----------~~ki~G~~vvaVP~r---D 209 (267)
T PRK13668 146 REMALFNLRSLPTPVKQDEVAGNTFYFLNTNDGYDASRILNES---FLQEM----------REKIEGEMLVAVPHQ---D 209 (267)
T ss_pred HHHHHHHHHhcccccccceecCceEEEEeCCCchHHHHHhhHH---HHHHH----------HHhCCCCEEEEeecC---c
Confidence 4667888888643 248888888999999999864 45544 445567789999954 3
Q ss_pred C---CCCCCCCCchhHHHHHHHHHHH
Q psy5987 153 F---CGTDMTIGTDSALHRIIEAIDA 175 (197)
Q Consensus 153 i---~g~d~s~GfdTA~~~~~~~i~~ 175 (197)
+ .++.---|||.-++...++..+
T Consensus 210 vLIiad~rne~Gydvla~lt~~ffa~ 235 (267)
T PRK13668 210 VLIIADIRNETGYDVLAQMTMDFFAK 235 (267)
T ss_pred EEEEecCCChHHHHHHHHHHHHHHhC
Confidence 3 1222334666555555444433
No 389
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.84 E-value=3.8e+02 Score=20.30 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=25.6
Q ss_pred HHhCCcE-EEEecCCCcHHH------HHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEe
Q psy5987 90 IDRGITN-LVVIGGDGSLTG------ANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGL 145 (197)
Q Consensus 90 ~~~~I~~-LiviGG~gs~~~------a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgi 145 (197)
...+-|. ++.+|.|+.... ...+.+.+.++++. ++++.++.+|+.+
T Consensus 58 ~~~~~d~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~----------~~~~~~~~~ii~~ 110 (191)
T cd01834 58 LPAKPDVVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDR----------LKNKESAPRIVLV 110 (191)
T ss_pred ccCCCCEEEEEeecchHhhcccccccHHHHHHHHHHHHHH----------HHcccCCCcEEEE
Confidence 3445555 566888888863 44444544444433 3334456666665
No 390
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=20.76 E-value=4.6e+02 Score=21.24 Aligned_cols=64 Identities=22% Similarity=0.260 Sum_probs=42.8
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
+|++.. -..|-.+.++.++.+.+..+|+.+.-+. ++.. +.+.
T Consensus 2 i~~v~~-~~~~~~~~~~~gi~~~~~~~g~~~~~~~---------------------------------~~~~----~~~~ 43 (271)
T cd06314 2 IAVVTN-GASPFWKIAEAGVKAAGKELGVDVEFVV---------------------------------PQQG----TVNA 43 (271)
T ss_pred eEEEcC-CCcHHHHHHHHHHHHHHHHcCCeEEEeC---------------------------------CCCC----CHHH
Confidence 566653 3567788888888888888887665331 0110 1233
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~ 103 (197)
..+..+.+...++|++|+...+
T Consensus 44 ~~~~i~~l~~~~vDgiIi~~~~ 65 (271)
T cd06314 44 QLRMLEDLIAEGVDGIAISPID 65 (271)
T ss_pred HHHHHHHHHhcCCCEEEEecCC
Confidence 4566777888999999999754
No 391
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=20.76 E-value=1.7e+02 Score=25.69 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=52.4
Q ss_pred HHHHHHHHH-HcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhh-hcCc-ee--cccCCCCccChhHHHHHHHHHHHh
Q psy5987 18 VRACVRMGI-YLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH-KGGT-VI--GSARCSDFREKAGRLKAAKNLIDR 92 (197)
Q Consensus 18 i~~~v~~~~-~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~-~gGs-~L--gssR~~~~~~~~~~~~~~~~l~~~ 92 (197)
++.+++.+. ..+..+..+.-|-.+. ...+.+..-+..+.. ++|. .+ -|+|.. +..+++.+++.+.++
T Consensus 33 l~~~~~~~~~~~~p~~~svt~~d~~~-----~~~~~t~~~~~~~~~~~~~~~~i~Hltc~d~---n~~~i~~~l~~~~~~ 104 (291)
T COG0685 33 LEKLLERLAILLGPGFDSVTIPDGSR-----GTPRRTSVAAAALLKRTGGIEPIPHLTCRDR---NRIEIISILKGAAAL 104 (291)
T ss_pred HHHHHHHHHhhhCCceEEEEecCCCC-----CCCcccHHHHHHHHHhcCCCccceeecccCC---CHHHHHHHHHHHHHh
Confidence 455555544 5566666665544333 234555555665544 4455 22 456654 568899999999999
Q ss_pred CCcEEEEecCCCc
Q psy5987 93 GITNLVVIGGDGS 105 (197)
Q Consensus 93 ~I~~LiviGG~gs 105 (197)
+|+.++.+.||..
T Consensus 105 Gi~~ilaLrGDpp 117 (291)
T COG0685 105 GIRNILALRGDPP 117 (291)
T ss_pred CCceEEEecCCCC
Confidence 9999999999995
No 392
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=20.64 E-value=2.2e+02 Score=26.06 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=44.6
Q ss_pred hhHHHHHHHH-HHHh-CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCC
Q psy5987 79 KAGRLKAAKN-LIDR-GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGT 156 (197)
Q Consensus 79 ~~~~~~~~~~-l~~~-~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~ 156 (197)
++++++++++ ++++ +-+.++++..--+-....-+ +.+. ++.+++.++++||.++.. ...+
T Consensus 81 ~~~L~~ai~ei~~~~~~P~~I~V~tTC~~e~IGDDi----~~v~----------~e~~~~~~~~pvv~v~t~---Gf~g- 142 (427)
T PRK02842 81 NEELDRVVEELIKRRPNISVLFLVGSCPSEVIKLDL----EGLA----------ERLSTEFAGVPVLNYSGS---GLET- 142 (427)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEECCChHHhhcCCH----HHHH----------HHhhcccCCCeEEEeeCC---Cccc-
Confidence 4556666666 6666 68899998866544332222 1122 223334346777766542 3333
Q ss_pred CCCCCchhHHHHHHHHHH
Q psy5987 157 DMTIGTDSALHRIIEAID 174 (197)
Q Consensus 157 d~s~GfdTA~~~~~~~i~ 174 (197)
.++-||+.|++.+.+.+.
T Consensus 143 ~~~~G~~~~~~alv~~~~ 160 (427)
T PRK02842 143 TFTQGEDAVLAALVPFCP 160 (427)
T ss_pred cHHHHHHHHHHHHhhhcc
Confidence 356688888887776654
No 393
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=20.62 E-value=98 Score=25.59 Aligned_cols=43 Identities=12% Similarity=-0.033 Sum_probs=28.2
Q ss_pred eEEEeCCCChhhHhHH--HHHHHHHHHHcCCE---EEEEcCcchhhcc
Q psy5987 2 TAQVNKKSSSTGMNAA--VRACVRMGIYLGCK---VFFIKEGYQGMVD 44 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~--i~~~v~~~~~~g~~---v~g~~~G~~GL~~ 44 (197)
.||+.+|||...-=.- +....+...+.+.. |+||-.|-.=+..
T Consensus 47 ~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~ 94 (198)
T COG0518 47 DGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAK 94 (198)
T ss_pred CEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHH
Confidence 4899999994443333 44455554455555 9999998775553
No 394
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=20.61 E-value=2.8e+02 Score=25.13 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=16.3
Q ss_pred HHHhCCcEEEEecCCCcHHHH
Q psy5987 89 LIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 89 l~~~~I~~LiviGG~gs~~~a 109 (197)
+.+++.|+|++-||.|.....
T Consensus 214 i~~~~~DGIvLSgGPgdp~~~ 234 (360)
T PRK12564 214 ILALNPDGVFLSNGPGDPAAL 234 (360)
T ss_pred HHhcCCCEEEEeCCCCChHHH
Confidence 345689999999999876543
No 395
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=20.60 E-value=5.5e+02 Score=22.27 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCcE-EEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceE-EEeeeecccCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITN-LVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHI-AGLVGSIDNDFCGTDMT 159 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~-LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~v-vgiPkTIDNDi~g~d~s 159 (197)
+.++.+.|++ .++ .+++|||--|.-+.-+.+. -+.++++ +-..+.+.+++| ||+-+|
T Consensus 159 ~~~l~~~~~~--~G~L~fylGGDNi~~v~p~~~~~---~~~~~i~-----~V~~~~~i~lkvGIGig~t----------- 217 (246)
T PF05165_consen 159 YAKLMKYLEK--YGSLAFYLGGDNIMAVCPDLDED---DLLDAIE-----HVEEEVGIDLKVGIGIGKT----------- 217 (246)
T ss_dssp HHHHHHHHHT--TT---EEEETTEEEEE-TT--HH---HHHHHHH-----HHHHHHS--EEEEEEEESS-----------
T ss_pred HHHHHHHHHh--cCCEEEEecCceEEEECCCCCHH---HHHHHHH-----HHHhhcCceEEEeecCCCC-----------
Confidence 4556677754 444 3689999988755444321 1122221 111122334555 677666
Q ss_pred CCchhHHHHHHHHHHHHHHhhccCCcEEEEE
Q psy5987 160 IGTDSALHRIIEAIDAIVSTAYSHQRTFIME 190 (197)
Q Consensus 160 ~GfdTA~~~~~~~i~~l~~~a~S~~rv~ivE 190 (197)
-..|...+.++++.++ ....++.|++++
T Consensus 218 --a~~A~~~At~ALe~iR-~~r~~~~~~~~~ 245 (246)
T PF05165_consen 218 --ARDAGMLATKALETIR-EGRTDGVVHTLK 245 (246)
T ss_dssp --HHHHHHHHHHHHHHHH-TTSSSSSEEEEE
T ss_pred --HHHHHHHHHHHHHHHH-hcCCCCcEEEec
Confidence 2468888999999888 444566777654
No 396
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=20.56 E-value=2.7e+02 Score=22.14 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=34.5
Q ss_pred hhcCceecccCCCCccChhHHHHHHHHHHHhCCcEEE-EecCCCcHHHHHHHH
Q psy5987 62 HKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLV-VIGGDGSLTGANLFR 113 (197)
Q Consensus 62 ~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I~~Li-viGG~gs~~~a~~l~ 113 (197)
..-...+|-|-..- ...+..+++++.|++.+++..+ ++||+=+......|.
T Consensus 61 ~~dv~vIgvSsl~g-~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~ 112 (143)
T COG2185 61 EEDVDVIGVSSLDG-GHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELK 112 (143)
T ss_pred hcCCCEEEEEeccc-hHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHH
Confidence 44445565544332 1345678899999999999888 889988877654443
No 397
>TIGR00035 asp_race aspartate racemase.
Probab=20.54 E-value=2.1e+02 Score=23.74 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHH
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQ 114 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~ 114 (197)
+...++++.|++.+.|.+ +|.-|.+......+.+
T Consensus 62 ~~l~~~~~~L~~~g~d~i-viaCNTah~~~~~l~~ 95 (229)
T TIGR00035 62 PILIDIAVKLENAGADFI-IMPCNTAHKFAEDIQK 95 (229)
T ss_pred HHHHHHHHHHHHcCCCEE-EECCccHHHHHHHHHH
Confidence 457888999999999955 5555544433444443
No 398
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=20.51 E-value=1.8e+02 Score=24.86 Aligned_cols=88 Identities=17% Similarity=0.120 Sum_probs=42.4
Q ss_pred hhhcCceecccCCCCccChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCc
Q psy5987 61 IHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHL 140 (197)
Q Consensus 61 ~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i 140 (197)
..+|=.+..-.++++ ..+.+.+.|. +.|.++|=||| |.. +|++|-+.|....-.++-..++
T Consensus 59 ~~lg~~v~~L~l~~~-----~~~~Ie~~l~--~~d~IyVgGGN-TF~-----------LL~~lke~gld~iIr~~vk~G~ 119 (224)
T COG3340 59 AKLGLEVSELHLSKP-----PLAAIENKLM--KADIIYVGGGN-TFN-----------LLQELKETGLDDIIRERVKAGT 119 (224)
T ss_pred HHcCCeeeeeeccCC-----CHHHHHHhhh--hccEEEECCch-HHH-----------HHHHHHHhCcHHHHHHHHHcCC
Confidence 334434444455543 2344445554 56666666666 553 3344444444331112222356
Q ss_pred eEEEee-------eec--cc--CCCCCCCCCCchhHHH
Q psy5987 141 HIAGLV-------GSI--DN--DFCGTDMTIGTDSALH 167 (197)
Q Consensus 141 ~vvgiP-------kTI--DN--Di~g~d~s~GfdTA~~ 167 (197)
..+|.. .|| +| |-|-+..++||.+|++
T Consensus 120 ~YiG~SAGA~ia~p~I~t~s~mD~p~~~p~l~~~~gLn 157 (224)
T COG3340 120 PYIGWSAGANIAGPTIETTSYMDMPIVAPQLGDFDGLN 157 (224)
T ss_pred ceEEeccCceeecCceeeccCCCccccccccccccccC
Confidence 666643 122 34 6666666666666554
No 399
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=20.51 E-value=4.7e+02 Score=21.19 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=41.7
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++.-.=..|=...++.++.+.+...|++++-.. ++. +.+.
T Consensus 2 ~g~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~----------------------------------~~~----~~~~ 43 (273)
T cd06309 2 VGFSQVGAESPWRTAETKSIKDAAEKRGFDLKFAD----------------------------------AQQ----KQEN 43 (273)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHHHhcCCEEEEeC----------------------------------CCC----CHHH
Confidence 34444444456677788888888877777765320 111 1234
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~g 104 (197)
..++.+.+...++|++|+.+.+.
T Consensus 44 ~~~~i~~l~~~~vdgiIi~~~~~ 66 (273)
T cd06309 44 QISAIRSFIAQGVDVIILAPVVE 66 (273)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcc
Confidence 45677778888999999987653
No 400
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.48 E-value=4.5e+02 Score=21.02 Aligned_cols=22 Identities=5% Similarity=0.149 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~ 103 (197)
.+.+.+.+.+.++|++|+...+
T Consensus 49 ~~~~~~~~~~~~~dgiii~~~~ 70 (270)
T cd06294 49 LEEVKKMIQQKRVDGFILLYSR 70 (270)
T ss_pred HHHHHHHHHHcCcCEEEEecCc
Confidence 3444455566779999888654
No 401
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=20.43 E-value=2.3e+02 Score=24.86 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=24.4
Q ss_pred cChhHHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 77 REKAGRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 77 ~~~~~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
.++++..+.++.+++.+++.+.+.||....
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~ 101 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPD 101 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 456777788888899999999999997653
No 402
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=20.34 E-value=4.8e+02 Score=21.25 Aligned_cols=66 Identities=9% Similarity=0.018 Sum_probs=41.1
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-.-|-...++.++-+.+...|+++.-.. +... .+.+.
T Consensus 2 Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~----------------------------------~~~~--~~~~~ 45 (268)
T cd06306 2 LCVLYPHLKDAYWLSVNYGMVEEAKRLGVSLKLLE----------------------------------AGGY--PNLAK 45 (268)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHHHHcCCEEEEec----------------------------------CCCC--CCHHH
Confidence 56666655566667777777777766665554220 1101 01234
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~ 103 (197)
..+..+.+...++|++|+.+.+
T Consensus 46 ~~~~i~~~~~~~vdgiI~~~~~ 67 (268)
T cd06306 46 QIAQLEDCAAWGADAILLGAVS 67 (268)
T ss_pred HHHHHHHHHHcCCCEEEEcCCC
Confidence 4567788888999999998754
No 403
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=20.28 E-value=5.8e+02 Score=23.15 Aligned_cols=91 Identities=12% Similarity=0.143 Sum_probs=50.2
Q ss_pred EEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchh---hc----cC-CCCeEECC---hhhhhhhhhh-cCceecc
Q psy5987 3 AQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQG---MV----DG-GDNIVEAN---WSSVSSIIHK-GGTVIGS 70 (197)
Q Consensus 3 aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~G---L~----~~-~~~~~~l~---~~~v~~~~~~-gGs~Lgs 70 (197)
++++++| ..+++.++.++ ...|-+|+.....|.+ ++ .. ...+..++ .+.+...... .-.++-+
T Consensus 78 ~v~~~sG-~~Ai~~~l~al----l~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~ 152 (405)
T PRK08776 78 GVITATG-MGAINLVLNAL----LQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIE 152 (405)
T ss_pred eEEEcCH-HHHHHHHHHHH----hCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 5777777 46777666665 4568888887778766 11 11 11233332 3344433221 1223333
Q ss_pred cCCCCccChhHHHHHHHHHHHhCCcEEEEe
Q psy5987 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVI 100 (197)
Q Consensus 71 sR~~~~~~~~~~~~~~~~l~~~~I~~Livi 100 (197)
+-..|.....+++++.+.+++++ .++++
T Consensus 153 ~P~NPtG~v~dl~~I~~la~~~g--i~vIv 180 (405)
T PRK08776 153 TPSNPLLRITDLRFVIEAAHKVG--ALTVV 180 (405)
T ss_pred CCCCCCCccCCHHHHHHHHHHcC--CEEEE
Confidence 44445444567888888888875 35554
No 404
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=20.24 E-value=3.8e+02 Score=23.20 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTD 157 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d 157 (197)
+...++++.+.+-+-|+ |+|||..-...-+.. +++ +.+++ .++++|+.-|...++=.+.-|
T Consensus 28 ~~~~ei~~~~~~~GTDa-ImIGGS~gvt~~~~~---------~~v------~~ik~-~~~lPvilfP~~~~~is~~aD 88 (240)
T COG1646 28 EEADEIAEAAAEAGTDA-IMIGGSDGVTEENVD---------NVV------EAIKE-RTDLPVILFPGSPSGISPYAD 88 (240)
T ss_pred cccHHHHHHHHHcCCCE-EEECCcccccHHHHH---------HHH------HHHHh-hcCCCEEEecCChhccCccCC
Confidence 44678888999999995 567777655543322 122 22233 468999999988877655433
No 405
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=20.22 E-value=4.4e+02 Score=20.75 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHhCCcEEEE---ecCCCcHHHHHHHHHHhHHHHHH
Q psy5987 80 AGRLKAAKNLIDRGITNLVV---IGGDGSLTGANLFRQEWPELLDQ 122 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~Liv---iGG~gs~~~a~~l~~~~~~~l~~ 122 (197)
.+..++.+.+++++++.+|+ .--+|+-......++.|.+.|++
T Consensus 40 ~~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~ 85 (141)
T COG0816 40 QDFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKK 85 (141)
T ss_pred hhHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHH
Confidence 47889999999999997765 11333333344555666555544
No 406
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=20.18 E-value=1e+02 Score=28.27 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
+.+++++.+.|++.++..+|+++||==+.
T Consensus 349 ~~er~~Ll~~l~~~~~~~vV~LSGDvH~~ 377 (453)
T PF09423_consen 349 PAERQRLLDFLRESGIRNVVFLSGDVHAS 377 (453)
T ss_dssp HHHHHHHHHHHHHTT---EEEEE-SSSSE
T ss_pred HHHHHHHHHHHHhhCCCCEEEEecCcchh
Confidence 45689999999999999999999995443
No 407
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=20.11 E-value=5.4e+02 Score=22.23 Aligned_cols=88 Identities=11% Similarity=0.021 Sum_probs=45.4
Q ss_pred EEeCCCChhh-HhHHHHHHHHHHHH--cCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 4 QVNKKSSSTG-MNAAVRACVRMGIY--LGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 4 Il~sGG~apG-~Na~i~~~v~~~~~--~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
|+.++|.++| +.-+. +++.++. .+.+++++ .| .++-+. -+... . +...+. ..|. ...-| ..+....
T Consensus 4 i~i~~Ggt~G~i~~a~--l~~~L~~~~~~~~~~~~-~~-~~~~~~--~~~~~-~-~~~~l~-~~g~-~~~~~-~~~~~~~ 72 (380)
T PRK00025 4 IAIVAGEVSGDLLGAG--LIRALKARAPNLEFVGV-GG-PRMQAA--GCESL-F-DMEELA-VMGL-VEVLP-RLPRLLK 72 (380)
T ss_pred EEEEecCcCHHHHHHH--HHHHHHhcCCCcEEEEE-cc-HHHHhC--CCccc-c-CHHHhh-hccH-HHHHH-HHHHHHH
Confidence 5666666776 77664 7777765 45577776 33 454433 11111 1 111111 1111 00000 0011123
Q ss_pred HHHHHHHHHHHhCCcEEEEecC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGG 102 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG 102 (197)
...++.+.+++++.|.++..|-
T Consensus 73 ~~~~~~~~l~~~kPdivi~~~~ 94 (380)
T PRK00025 73 IRRRLKRRLLAEPPDVFIGIDA 94 (380)
T ss_pred HHHHHHHHHHHcCCCEEEEeCC
Confidence 4667888899999999999874
No 408
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=20.08 E-value=4.5e+02 Score=22.17 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcC-CceEEEeeeecccCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYC-HLHIAGLVGSIDNDFCGTD 157 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~-~i~vvgiPkTIDNDi~g~d 157 (197)
.+++.+.+.+.+-|++ +|||..... ..+-+ .+ + ..++.. .++|+.-|...++=.++-|
T Consensus 14 ~~~~~~~~~~~gtdai-~vGGS~~v~--~~~~~----~~-~----------~ik~~~~~~Pvilfp~~~~~i~~~aD 72 (219)
T cd02812 14 DEEIAKLAEESGTDAI-MVGGSDGVS--STLDN----VV-R----------LIKRIRRPVPVILFPSNPEAVSPGAD 72 (219)
T ss_pred HHHHHHHHHhcCCCEE-EECCccchh--hhHHH----HH-H----------HHHHhcCCCCEEEeCCCccccCcCCC
Confidence 4556677777888865 677776452 11111 11 0 112222 4899999988887666555
No 409
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=20.06 E-value=1.1e+02 Score=24.75 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~ 103 (197)
++++++.+.|+++++ -++++||.
T Consensus 3 ~~l~~~~~~L~~~gv-~~~ivGG~ 25 (181)
T PF09970_consen 3 EALKEILEELNKRGV-EYVIVGGA 25 (181)
T ss_pred HHHHHHHHHHHHcCC-eEEEECHH
Confidence 568899999999999 57788885
No 410
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=20.06 E-value=1.1e+02 Score=24.70 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=15.8
Q ss_pred cCCC--CCC-CCCCchhHHHHHHHHHH
Q psy5987 151 NDFC--GTD-MTIGTDSALHRIIEAID 174 (197)
Q Consensus 151 NDi~--g~d-~s~GfdTA~~~~~~~i~ 174 (197)
||+. .-| |||||||-++.=-...+
T Consensus 102 ndL~fWleDiYTPGyDsLLKkKEae~k 128 (159)
T PF06789_consen 102 NDLEFWLEDIYTPGYDSLLKKKEAELK 128 (159)
T ss_pred ccchHHHhcccCCchHHHHHHHHHHHH
Confidence 5663 233 99999999876544333
No 411
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=20.00 E-value=2.3e+02 Score=26.00 Aligned_cols=25 Identities=8% Similarity=0.218 Sum_probs=18.5
Q ss_pred HHHHhCCcEEEEecCCCcHHHHHHH
Q psy5987 88 NLIDRGITNLVVIGGDGSLTGANLF 112 (197)
Q Consensus 88 ~l~~~~I~~LiviGG~gs~~~a~~l 112 (197)
.+.++++|+|++-||.|.......+
T Consensus 228 ~i~~~~~dgIilSgGPg~p~~~~~~ 252 (382)
T CHL00197 228 DILSYQPDGILLSNGPGDPSAIHYG 252 (382)
T ss_pred HHhccCCCEEEEcCCCCChhHHHHH
Confidence 3456789999999999987654433
Done!