Query psy5987
Match_columns 197
No_of_seqs 105 out of 1037
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 23:41:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pfk_A Phosphofructokinase; tr 100.0 1.2E-60 4.1E-65 419.7 17.5 170 2-196 5-174 (320)
2 1zxx_A 6-phosphofructokinase; 100.0 1.4E-60 4.6E-65 419.1 17.4 170 2-196 4-173 (319)
3 3o8l_A 6-phosphofructokinase, 100.0 2.1E-60 7.2E-65 455.2 17.4 195 2-196 18-212 (762)
4 3o8o_B 6-phosphofructokinase s 100.0 1E-59 3.6E-64 450.6 21.5 195 2-196 6-201 (766)
5 3o8o_A 6-phosphofructokinase s 100.0 7.6E-60 2.6E-64 451.9 18.7 195 2-196 8-202 (787)
6 4a3s_A 6-phosphofructokinase; 100.0 1.5E-59 5.2E-64 412.7 16.8 170 2-196 4-173 (319)
7 3opy_B 6-phosphofructo-1-kinas 100.0 3.8E-59 1.3E-63 452.1 14.7 195 2-196 184-379 (941)
8 3opy_A 6-phosphofructo-1-kinas 100.0 7E-59 2.4E-63 450.0 15.9 195 2-196 213-407 (989)
9 3hno_A Pyrophosphate-dependent 100.0 2.4E-56 8.3E-61 404.4 19.1 176 2-196 6-194 (419)
10 2hig_A 6-phospho-1-fructokinas 100.0 1.5E-55 5.1E-60 404.4 19.1 171 2-196 100-276 (487)
11 2f48_A Diphosphate--fructose-6 100.0 5.3E-55 1.8E-59 406.8 18.9 175 2-196 75-255 (555)
12 3o8l_A 6-phosphofructokinase, 100.0 1.4E-53 4.6E-58 408.2 17.1 174 2-196 403-577 (762)
13 3o8o_A 6-phosphofructokinase s 100.0 2E-53 6.9E-58 407.5 16.7 174 2-196 396-571 (787)
14 3o8o_B 6-phosphofructokinase s 100.0 3.9E-53 1.3E-57 405.2 16.4 175 2-196 396-572 (766)
15 3opy_B 6-phosphofructo-1-kinas 100.0 8.2E-53 2.8E-57 408.0 16.9 175 2-196 574-750 (941)
16 3opy_A 6-phosphofructo-1-kinas 100.0 1.6E-52 5.6E-57 405.6 17.8 172 2-196 601-776 (989)
17 2an1_A Putative kinase; struct 95.5 0.019 6.4E-07 48.4 5.8 74 2-111 8-81 (292)
18 2i2c_A Probable inorganic poly 95.1 0.024 8.3E-07 47.6 5.0 68 82-179 17-93 (272)
19 3l49_A ABC sugar (ribose) tran 94.5 1.4 4.9E-05 35.2 14.3 124 2-189 8-131 (291)
20 1z0s_A Probable inorganic poly 91.9 0.04 1.4E-06 47.0 0.8 64 82-178 42-122 (278)
21 3g1w_A Sugar ABC transporter; 91.9 4.2 0.00014 32.8 15.0 126 2-190 7-134 (305)
22 3egc_A Putative ribose operon 91.2 4.9 0.00017 32.1 13.1 66 2-105 11-76 (291)
23 3rot_A ABC sugar transporter, 91.0 5.3 0.00018 32.2 16.1 68 2-105 6-73 (297)
24 3e61_A Putative transcriptiona 90.2 5.8 0.0002 31.4 14.9 118 2-190 11-129 (277)
25 3e3m_A Transcriptional regulat 90.1 5.8 0.0002 33.1 12.7 27 80-106 113-139 (355)
26 3m9w_A D-xylose-binding peripl 89.7 7.1 0.00024 31.6 14.8 66 2-105 5-70 (313)
27 3hcw_A Maltose operon transcri 89.5 4.8 0.00016 32.5 11.4 26 81-106 56-81 (295)
28 3o74_A Fructose transport syst 89.3 6.7 0.00023 30.8 13.7 65 2-104 5-69 (272)
29 3ksm_A ABC-type sugar transpor 88.9 7.1 0.00024 30.6 14.2 67 2-104 3-70 (276)
30 3dbi_A Sugar-binding transcrip 88.5 9.2 0.00032 31.4 13.1 27 80-106 106-132 (338)
31 3k4h_A Putative transcriptiona 88.2 8.5 0.00029 30.6 14.4 67 2-106 11-82 (292)
32 1u0t_A Inorganic polyphosphate 88.2 0.21 7.2E-06 42.5 2.2 22 91-112 73-94 (307)
33 1jq5_A Glycerol dehydrogenase; 88.2 0.89 3E-05 39.3 6.3 52 79-152 72-123 (370)
34 3gbv_A Putative LACI-family tr 86.7 10 0.00036 30.1 13.1 27 79-105 55-81 (304)
35 3gv0_A Transcriptional regulat 86.4 11 0.00038 30.1 12.9 24 83-106 56-79 (288)
36 3kjx_A Transcriptional regulat 86.1 6 0.00021 32.7 10.2 27 80-106 111-137 (344)
37 3qk7_A Transcriptional regulat 85.8 12 0.00042 30.0 13.0 66 2-106 9-78 (294)
38 1yt5_A Inorganic polyphosphate 85.7 0.31 1E-05 40.4 1.8 19 92-110 40-58 (258)
39 3uhj_A Probable glycerol dehyd 85.5 1.2 4.2E-05 39.1 5.8 54 78-153 91-144 (387)
40 3l8m_A Probable thiamine pyrop 85.3 4.2 0.00014 32.8 8.4 99 1-114 1-109 (212)
41 3afo_A NADH kinase POS5; alpha 85.2 0.14 5E-06 45.4 -0.4 56 92-179 113-171 (388)
42 3huu_A Transcription regulator 85.0 14 0.00047 29.8 13.0 27 80-106 70-96 (305)
43 3uug_A Multiple sugar-binding 84.8 14 0.00049 29.9 14.7 65 2-104 6-70 (330)
44 3kke_A LACI family transcripti 84.6 14 0.00049 29.7 13.9 27 80-106 58-84 (303)
45 3o1i_D Periplasmic protein TOR 84.5 11 0.00036 30.1 10.7 68 2-105 8-75 (304)
46 3iv7_A Alcohol dehydrogenase I 83.8 1.4 4.8E-05 38.4 5.3 52 78-152 73-124 (364)
47 2rjo_A Twin-arginine transloca 83.8 16 0.00056 29.8 12.8 65 2-104 8-74 (332)
48 3k9c_A Transcriptional regulat 83.4 16 0.00053 29.2 12.9 25 82-106 55-79 (289)
49 3h5o_A Transcriptional regulat 83.3 18 0.0006 29.7 14.5 28 79-106 104-131 (339)
50 3clk_A Transcription regulator 83.3 12 0.0004 29.9 10.5 32 2-33 11-42 (290)
51 3bil_A Probable LACI-family tr 83.1 19 0.00064 29.9 13.6 26 80-105 109-134 (348)
52 1rrm_A Lactaldehyde reductase; 82.2 2.9 9.9E-05 36.3 6.7 69 78-153 73-146 (386)
53 3jzd_A Iron-containing alcohol 82.1 1.8 6.1E-05 37.6 5.3 50 78-149 74-123 (358)
54 3hl0_A Maleylacetate reductase 81.8 2 6.8E-05 37.2 5.5 52 78-152 72-123 (353)
55 3hs3_A Ribose operon repressor 81.0 5.7 0.0002 31.7 7.7 62 2-101 13-75 (277)
56 3ox4_A Alcohol dehydrogenase 2 80.8 2.2 7.4E-05 37.3 5.4 69 78-153 73-144 (383)
57 3tb6_A Arabinose metabolism tr 80.8 19 0.00065 28.4 15.2 26 80-105 58-83 (298)
58 2qv7_A Diacylglycerol kinase D 80.6 1.9 6.6E-05 36.6 4.9 53 82-154 69-121 (337)
59 2bon_A Lipid kinase; DAG kinas 80.4 2.6 8.9E-05 35.8 5.7 55 82-154 71-125 (332)
60 3k94_A Thiamin pyrophosphokina 79.9 1.7 5.7E-05 35.6 4.1 105 1-114 1-112 (223)
61 1o2d_A Alcohol dehydrogenase, 79.9 2 6.9E-05 37.3 4.8 64 78-148 83-149 (371)
62 3rf7_A Iron-containing alcohol 79.7 4.2 0.00014 35.6 6.9 70 77-153 90-165 (375)
63 2vk2_A YTFQ, ABC transporter p 79.4 23 0.00078 28.5 14.6 66 2-105 5-70 (306)
64 3okf_A 3-dehydroquinate syntha 79.0 1.6 5.4E-05 38.7 3.9 53 77-149 104-159 (390)
65 2iks_A DNA-binding transcripti 78.8 23 0.00078 28.2 11.9 26 80-105 63-88 (293)
66 3l6u_A ABC-type sugar transpor 78.8 22 0.00076 28.0 15.5 67 2-106 11-77 (293)
67 3pfn_A NAD kinase; structural 78.6 1.2 4.1E-05 39.2 3.0 56 92-179 107-164 (365)
68 1oj7_A Hypothetical oxidoreduc 78.4 2.8 9.6E-05 36.8 5.4 67 78-151 91-163 (408)
69 2dri_A D-ribose-binding protei 78.2 23 0.00078 27.9 13.8 125 2-190 4-130 (271)
70 3d8u_A PURR transcriptional re 78.2 22 0.00077 27.7 15.2 66 2-105 6-71 (275)
71 2gru_A 2-deoxy-scyllo-inosose 78.1 2 6.8E-05 37.3 4.2 52 78-149 76-130 (368)
72 3bfj_A 1,3-propanediol oxidore 78.1 3.7 0.00013 35.6 6.0 69 77-152 76-147 (387)
73 1dbq_A Purine repressor; trans 78.1 23 0.0008 27.9 15.5 66 2-105 10-75 (289)
74 3clh_A 3-dehydroquinate syntha 77.6 3.8 0.00013 35.1 5.9 52 78-149 67-121 (343)
75 3jy6_A Transcriptional regulat 76.5 26 0.00088 27.6 14.8 65 2-104 10-74 (276)
76 3brq_A HTH-type transcriptiona 76.5 26 0.00088 27.6 15.3 27 79-105 63-89 (296)
77 2fep_A Catabolite control prot 76.2 27 0.00094 27.7 15.5 66 2-105 19-84 (289)
78 1xah_A Sadhqs, 3-dehydroquinat 76.2 3.7 0.00013 35.2 5.4 52 78-149 72-126 (354)
79 2rgy_A Transcriptional regulat 75.4 29 0.00098 27.6 15.1 66 2-105 11-79 (290)
80 2x7x_A Sensor protein; transfe 75.2 32 0.0011 27.9 13.3 25 80-104 49-73 (325)
81 2h0a_A TTHA0807, transcription 74.7 14 0.00048 29.0 8.2 33 1-33 1-33 (276)
82 1vlj_A NADH-dependent butanol 74.5 4.5 0.00015 35.5 5.6 68 78-152 86-156 (407)
83 1kq3_A Glycerol dehydrogenase; 74.5 2 6.7E-05 37.3 3.2 52 79-153 81-132 (376)
84 2h3h_A Sugar ABC transporter, 74.3 25 0.00084 28.3 9.8 26 80-105 44-69 (313)
85 3s40_A Diacylglycerol kinase; 73.7 3.1 0.00011 34.9 4.2 53 81-154 52-104 (304)
86 1gud_A ALBP, D-allose-binding 72.7 34 0.0012 27.2 11.0 67 2-104 4-70 (288)
87 1ta9_A Glycerol dehydrogenase; 71.8 2.6 8.9E-05 37.8 3.4 51 79-152 132-182 (450)
88 3miz_A Putative transcriptiona 71.7 16 0.00055 29.2 8.0 27 79-105 56-82 (301)
89 3h75_A Periplasmic sugar-bindi 70.8 42 0.0014 27.4 14.3 33 2-34 6-39 (350)
90 1ujn_A Dehydroquinate synthase 70.6 7.1 0.00024 33.5 5.8 52 78-149 66-120 (348)
91 1sg6_A Pentafunctional AROM po 70.3 5.8 0.0002 34.6 5.3 53 77-149 84-141 (393)
92 2hsg_A Glucose-resistance amyl 68.4 46 0.0016 27.0 11.0 25 81-105 104-128 (332)
93 1tjy_A Sugar transport protein 68.4 38 0.0013 27.5 9.7 26 80-105 47-72 (316)
94 2qu7_A Putative transcriptiona 68.3 35 0.0012 26.9 9.2 65 2-105 11-75 (288)
95 3bbl_A Regulatory protein of L 67.1 45 0.0015 26.3 12.9 66 2-105 7-76 (287)
96 3mel_A Thiamin pyrophosphokina 66.7 11 0.00038 30.5 6.0 102 2-114 3-112 (222)
97 3ce9_A Glycerol dehydrogenase; 65.6 2.7 9.1E-05 36.0 2.0 54 78-154 74-127 (354)
98 4h08_A Putative hydrolase; GDS 65.2 40 0.0014 25.1 9.2 54 82-145 63-117 (200)
99 2o20_A Catabolite control prot 65.2 54 0.0019 26.6 15.8 26 80-105 106-131 (332)
100 3qbe_A 3-dehydroquinate syntha 65.0 8.9 0.0003 33.5 5.3 52 78-149 85-139 (368)
101 1qpz_A PURA, protein (purine n 64.8 56 0.0019 26.6 16.2 27 79-105 100-126 (340)
102 3c3k_A Alanine racemase; struc 64.5 50 0.0017 26.0 14.1 66 2-105 11-76 (285)
103 2ioy_A Periplasmic sugar-bindi 64.1 51 0.0017 25.9 14.5 65 2-104 4-68 (283)
104 3h5t_A Transcriptional regulat 61.5 31 0.0011 28.5 8.0 26 81-106 116-141 (366)
105 3s4y_A Thiamin pyrophosphokina 60.6 26 0.00088 28.8 7.1 101 2-114 23-142 (247)
106 3epo_A Thiamine biosynthesis p 59.9 5.4 0.00018 37.1 3.0 135 18-169 295-460 (612)
107 3lp6_A Phosphoribosylaminoimid 59.1 22 0.00075 28.1 6.1 49 78-150 47-96 (174)
108 3rag_A Uncharacterized protein 58.9 70 0.0024 26.3 9.5 44 78-124 115-162 (242)
109 2omk_A Hypothetical protein; s 57.5 22 0.00075 28.9 6.1 94 1-106 32-132 (231)
110 4grd_A N5-CAIR mutase, phospho 57.5 24 0.00081 27.9 6.0 49 78-150 52-101 (173)
111 3trh_A Phosphoribosylaminoimid 55.9 24 0.00081 27.7 5.8 47 78-148 46-93 (169)
112 3ihk_A Thiamin pyrophosphokina 55.6 24 0.00083 28.3 6.1 98 2-114 3-108 (218)
113 8abp_A L-arabinose-binding pro 55.3 75 0.0026 25.0 11.3 65 2-105 5-69 (306)
114 3oow_A Phosphoribosylaminoimid 54.7 18 0.00062 28.3 4.9 54 78-156 45-99 (166)
115 2him_A L-asparaginase 1; hydro 52.5 40 0.0014 29.2 7.3 33 78-110 84-118 (358)
116 3ors_A N5-carboxyaminoimidazol 50.0 26 0.0009 27.3 5.1 49 78-150 43-92 (163)
117 2fn9_A Ribose ABC transporter, 48.9 93 0.0032 24.3 16.3 66 2-105 5-70 (290)
118 3tqk_A Phospho-2-dehydro-3-deo 48.9 1.2E+02 0.0041 26.4 9.6 136 31-177 178-342 (346)
119 3brs_A Periplasmic binding pro 48.7 93 0.0032 24.2 13.3 68 2-105 8-77 (289)
120 1o4v_A Phosphoribosylaminoimid 47.7 25 0.00087 27.9 4.8 49 78-150 53-102 (183)
121 3kuu_A Phosphoribosylaminoimid 47.5 24 0.00082 27.9 4.6 47 78-148 52-99 (174)
122 3nxk_A Cytoplasmic L-asparagin 46.9 1.4E+02 0.0047 25.6 11.2 34 78-111 70-106 (334)
123 2fvy_A D-galactose-binding per 45.7 1.1E+02 0.0037 24.0 13.7 66 2-105 5-71 (309)
124 1jye_A Lactose operon represso 44.5 1.3E+02 0.0044 24.6 14.8 25 80-104 105-129 (349)
125 4pga_A Glutaminase-asparaginas 44.4 1.5E+02 0.0051 25.3 10.1 34 78-111 71-108 (337)
126 1u11_A PURE (N5-carboxyaminoim 44.4 31 0.0011 27.4 4.8 49 78-150 61-110 (182)
127 4b4k_A N5-carboxyaminoimidazol 43.5 30 0.001 27.5 4.6 12 137-148 98-109 (181)
128 3rg8_A Phosphoribosylaminoimid 43.4 52 0.0018 25.5 5.9 47 78-148 42-90 (159)
129 1xmp_A PURE, phosphoribosylami 43.1 25 0.00086 27.6 4.0 49 78-150 51-100 (170)
130 2rbg_A Putative uncharacterize 42.0 36 0.0012 25.2 4.4 42 77-118 70-111 (126)
131 3gyb_A Transcriptional regulat 41.6 1.2E+02 0.0041 23.4 12.1 34 2-35 8-41 (280)
132 1agx_A Glutaminase-asparaginas 41.1 1.7E+02 0.0056 24.9 10.5 34 78-111 63-100 (331)
133 3lm8_A Thiamine pyrophosphokin 40.9 28 0.00095 28.0 4.2 96 2-105 3-105 (222)
134 1wsa_A Asparaginase, asparagin 40.4 1.7E+02 0.0058 24.8 10.2 34 78-111 64-101 (330)
135 3k31_A Enoyl-(acyl-carrier-pro 39.7 1.3E+02 0.0046 24.2 8.4 87 2-105 32-120 (296)
136 2wlt_A L-asparaginase; hydrola 39.5 1.8E+02 0.006 24.7 11.2 34 78-111 66-103 (332)
137 3av3_A Phosphoribosylglycinami 38.1 1.5E+02 0.005 23.4 9.3 91 2-112 6-100 (212)
138 1o7j_A L-asparaginase; atomic 37.6 1.9E+02 0.0064 24.5 11.2 34 78-111 66-103 (327)
139 3cs3_A Sugar-binding transcrip 37.1 1.4E+02 0.0049 23.0 11.4 103 2-107 11-131 (277)
140 3ctp_A Periplasmic binding pro 37.0 1.6E+02 0.0055 23.6 11.9 25 80-105 103-127 (330)
141 3cq9_A Uncharacterized protein 36.1 46 0.0016 26.9 4.8 102 2-114 4-113 (227)
142 1vdr_A DHFR, dihydrofolate red 35.9 17 0.00058 27.4 2.0 49 81-153 81-129 (162)
143 3pzs_A PM kinase, pyridoxamine 35.3 1.8E+02 0.006 23.5 9.3 59 78-151 58-120 (289)
144 3s2u_A UDP-N-acetylglucosamine 34.2 80 0.0027 26.4 6.2 96 5-108 7-107 (365)
145 2dum_A Hypothetical protein PH 32.5 18 0.00062 26.4 1.6 59 82-155 106-164 (170)
146 1q77_A Hypothetical protein AQ 31.1 49 0.0017 23.0 3.8 23 82-105 98-120 (138)
147 3l18_A Intracellular protease 31.0 1.4E+02 0.0047 21.8 6.5 63 3-67 66-136 (168)
148 2q5c_A NTRC family transcripti 31.0 1.3E+02 0.0046 23.2 6.7 81 27-109 49-156 (196)
149 3l7n_A Putative uncharacterize 30.8 52 0.0018 26.1 4.2 42 3-44 48-99 (236)
150 3ek2_A Enoyl-(acyl-carrier-pro 30.2 1.9E+02 0.0065 22.3 7.8 85 3-104 17-103 (271)
151 1iv0_A Hypothetical protein; r 30.1 47 0.0016 23.2 3.4 20 135-154 49-68 (98)
152 1q7r_A Predicted amidotransfer 30.1 35 0.0012 26.7 3.1 42 3-44 63-109 (219)
153 3lup_A DEGV family protein; PS 30.1 71 0.0024 26.5 5.1 65 50-118 44-112 (285)
154 1cz3_A Dihydrofolate reductase 30.1 26 0.00088 26.4 2.2 28 81-108 81-108 (168)
155 1nu0_A Hypothetical protein YQ 30.0 1E+02 0.0035 22.9 5.5 21 80-101 40-60 (138)
156 2d6f_A Glutamyl-tRNA(Gln) amid 29.9 1.5E+02 0.0051 26.4 7.5 34 78-111 149-185 (435)
157 3d02_A Putative LACI-type tran 29.3 2E+02 0.0069 22.3 10.9 65 2-103 7-71 (303)
158 3skv_A SSFX3; jelly roll, GDSL 29.2 84 0.0029 27.2 5.6 52 86-145 237-289 (385)
159 3fij_A LIN1909 protein; 11172J 29.2 59 0.002 26.2 4.4 42 3-44 64-123 (254)
160 1wl8_A GMP synthase [glutamine 29.0 20 0.00069 27.3 1.4 42 3-44 46-87 (189)
161 3fst_A 5,10-methylenetetrahydr 28.3 73 0.0025 26.9 4.9 95 73-195 182-280 (304)
162 1esc_A Esterase; 2.10A {Strept 28.3 2E+02 0.0067 23.2 7.5 24 116-145 161-184 (306)
163 1zq1_A Glutamyl-tRNA(Gln) amid 28.2 1.5E+02 0.0051 26.4 7.1 34 78-111 150-186 (438)
164 1oi4_A Hypothetical protein YH 27.8 1.6E+02 0.0056 22.2 6.6 59 3-63 89-155 (193)
165 2d2r_A Undecaprenyl pyrophosph 27.7 1.1E+02 0.0037 25.1 5.7 93 80-179 46-159 (245)
166 3lkv_A Uncharacterized conserv 27.2 1.4E+02 0.0048 24.1 6.4 67 2-101 11-77 (302)
167 3mcw_A Putative hydrolase; iso 27.2 1.7E+02 0.0059 22.4 6.7 83 15-106 38-125 (198)
168 1x60_A Sporulation-specific N- 27.2 36 0.0012 22.2 2.3 25 75-99 52-76 (79)
169 3ksm_A ABC-type sugar transpor 26.9 1E+02 0.0036 23.6 5.4 77 17-101 110-195 (276)
170 2qh8_A Uncharacterized protein 26.8 2.4E+02 0.0081 22.3 8.1 23 79-101 55-77 (302)
171 1tq8_A Hypothetical protein RV 26.7 74 0.0025 23.2 4.2 51 82-147 108-158 (163)
172 3tnj_A Universal stress protei 26.0 72 0.0025 22.4 3.9 51 82-148 98-148 (150)
173 3nrc_A Enoyl-[acyl-carrier-pro 25.7 2.5E+02 0.0084 22.2 8.5 86 2-105 28-115 (280)
174 3ib7_A ICC protein; metallopho 25.6 2.5E+02 0.0084 22.3 7.6 24 79-102 50-75 (330)
175 2q8u_A Exonuclease, putative; 25.5 1.8E+02 0.0062 23.8 6.9 23 80-102 48-70 (336)
176 3s99_A Basic membrane lipoprot 25.5 3.1E+02 0.01 23.2 9.1 45 80-146 73-117 (356)
177 2abw_A PDX2 protein, glutamina 25.4 79 0.0027 24.6 4.4 43 3-45 46-96 (227)
178 1wls_A L-asparaginase; structu 24.9 3.1E+02 0.011 23.1 10.1 33 78-110 56-90 (328)
179 1qsg_A Enoyl-[acyl-carrier-pro 24.6 2.5E+02 0.0085 21.8 7.7 86 2-104 11-98 (265)
180 3lkb_A Probable branched-chain 24.5 1.4E+02 0.0049 24.4 6.1 80 14-102 126-207 (392)
181 2nuw_A 2-keto-3-deoxygluconate 24.4 62 0.0021 26.7 3.7 30 78-107 18-47 (288)
182 3cpr_A Dihydrodipicolinate syn 24.4 64 0.0022 26.9 3.8 30 78-107 35-64 (304)
183 3er6_A Putative transcriptiona 24.3 1.9E+02 0.0063 22.3 6.4 58 3-62 77-144 (209)
184 3b4u_A Dihydrodipicolinate syn 24.2 66 0.0023 26.7 3.8 30 78-107 22-51 (294)
185 2h31_A Multifunctional protein 24.2 1.4E+02 0.0048 26.6 6.1 19 80-98 279-297 (425)
186 2yxg_A DHDPS, dihydrodipicolin 23.9 67 0.0023 26.5 3.8 30 78-107 19-48 (289)
187 3jvd_A Transcriptional regulat 23.9 2.8E+02 0.0097 22.2 9.4 35 2-36 67-101 (333)
188 2r91_A 2-keto-3-deoxy-(6-phosp 23.9 65 0.0022 26.6 3.7 29 78-106 17-45 (286)
189 2qip_A Protein of unknown func 23.8 52 0.0018 24.7 2.9 48 81-148 95-144 (165)
190 3o26_A Salutaridine reductase; 23.6 2.7E+02 0.0091 21.8 8.9 86 2-104 14-102 (311)
191 2ojp_A DHDPS, dihydrodipicolin 23.5 68 0.0023 26.5 3.8 30 78-107 20-49 (292)
192 3dnf_A ISPH, LYTB, 4-hydroxy-3 23.5 1.3E+02 0.0046 25.4 5.6 100 10-113 95-228 (297)
193 3ipc_A ABC transporter, substr 23.5 53 0.0018 26.6 3.1 80 15-103 122-203 (356)
194 3l21_A DHDPS, dihydrodipicolin 23.4 70 0.0024 26.7 3.8 31 78-108 34-64 (304)
195 3ist_A Glutamate racemase; str 23.2 71 0.0024 26.3 3.8 23 83-105 57-79 (269)
196 3grk_A Enoyl-(acyl-carrier-pro 23.2 2.7E+02 0.0093 22.2 7.5 87 2-105 33-121 (293)
197 1w3i_A EDA, 2-keto-3-deoxy glu 23.2 71 0.0024 26.5 3.8 30 78-107 18-47 (293)
198 1xky_A Dihydrodipicolinate syn 23.2 71 0.0024 26.6 3.8 31 78-108 31-61 (301)
199 2wkj_A N-acetylneuraminate lya 23.1 71 0.0024 26.6 3.8 30 78-107 30-59 (303)
200 3il0_A Aminopeptidase P; XAA-P 23.0 72 0.0025 22.3 3.4 23 80-102 6-28 (131)
201 2gzm_A Glutamate racemase; enz 22.8 68 0.0023 26.1 3.6 32 82-113 54-85 (267)
202 3flu_A DHDPS, dihydrodipicolin 22.8 73 0.0025 26.4 3.8 30 78-107 26-55 (297)
203 2gm3_A Unknown protein; AT3G01 22.7 92 0.0032 22.6 4.1 53 82-149 113-165 (175)
204 3eaf_A ABC transporter, substr 22.6 2.9E+02 0.0099 22.5 7.7 80 14-101 124-207 (391)
205 2ciw_A Chloroperoxidase; oxido 22.4 29 0.001 29.6 1.3 12 7-18 26-37 (299)
206 2vrn_A Protease I, DR1199; cys 22.3 2.1E+02 0.0072 21.2 6.2 59 3-63 78-145 (190)
207 4eyg_A Twin-arginine transloca 22.3 1.6E+02 0.0055 23.6 5.9 80 16-104 125-205 (368)
208 3gdg_A Probable NADP-dependent 22.2 2.7E+02 0.0094 21.5 7.7 88 2-104 22-112 (267)
209 3lft_A Uncharacterized protein 22.1 2.9E+02 0.0098 21.7 11.2 63 2-101 5-70 (295)
210 3tak_A DHDPS, dihydrodipicolin 22.1 76 0.0026 26.2 3.8 29 78-106 20-48 (291)
211 1ccw_A Protein (glutamate muta 22.0 1.8E+02 0.0063 20.9 5.6 65 26-104 28-94 (137)
212 2vvt_A Glutamate racemase; iso 21.9 72 0.0025 26.4 3.6 32 82-113 75-106 (290)
213 2v4u_A CTP synthase 2; pyrimid 21.9 82 0.0028 26.0 4.0 42 3-44 93-134 (289)
214 2ehh_A DHDPS, dihydrodipicolin 21.7 70 0.0024 26.5 3.5 30 78-107 19-48 (294)
215 1mwp_A Amyloid A4 protein; hep 21.6 77 0.0026 22.5 3.2 21 131-151 44-69 (96)
216 2gd9_A Hypothetical protein YY 21.4 53 0.0018 25.0 2.5 27 80-106 105-131 (189)
217 1byk_A Protein (trehalose oper 21.3 2.7E+02 0.0092 21.0 9.5 32 2-33 5-36 (255)
218 2ywd_A Glutamine amidotransfer 21.2 1.3E+02 0.0045 22.4 4.8 43 3-45 42-90 (191)
219 2nv0_A Glutamine amidotransfer 21.2 1.2E+02 0.0041 22.9 4.6 43 3-45 41-88 (196)
220 1tv5_A Dhodehase, dihydroorota 21.2 2E+02 0.007 25.4 6.6 27 78-104 309-335 (443)
221 1es9_A PAF-AH, platelet-activa 21.2 2.7E+02 0.0091 20.9 8.6 45 91-145 91-136 (232)
222 3s81_A Putative aspartate race 21.1 83 0.0028 25.9 3.8 33 80-113 86-118 (268)
223 3o5v_A X-Pro dipeptidase; crea 21.0 79 0.0027 22.3 3.3 20 81-100 4-23 (132)
224 3jtw_A Dihydrofolate reductase 20.9 34 0.0012 26.1 1.3 27 81-107 97-123 (178)
225 2r8w_A AGR_C_1641P; APC7498, d 20.9 81 0.0028 26.7 3.8 31 78-108 53-83 (332)
226 4evq_A Putative ABC transporte 20.7 1.4E+02 0.0048 24.1 5.2 79 16-103 137-216 (375)
227 3ovk_A Aminopeptidase P, XAA-P 20.5 86 0.0029 22.2 3.4 22 80-101 10-31 (132)
228 2oho_A Glutamate racemase; iso 20.3 79 0.0027 25.8 3.5 24 82-105 63-86 (273)
229 2l69_A Rossmann 2X3 fold prote 20.3 2E+02 0.0068 20.5 5.1 51 78-146 60-110 (134)
No 1
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=1.2e-60 Score=419.66 Aligned_cols=170 Identities=44% Similarity=0.650 Sum_probs=165.8
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
+||+||||||||||++|++++++++++|++||||++||+||+++ ++++|+|++++.|.++|||+|||+|++++.++++
T Consensus 5 i~IltsGGdapGmNaair~vv~~a~~~g~~v~Gi~~G~~GL~~~--~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~~~ 82 (320)
T 1pfk_A 5 IGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYED--RMVQLDRYSVSDMINRGGTFLGSARFPEFRDENI 82 (320)
T ss_dssp EEEEECSSCCTTHHHHHHHHHHHHHHTTCEEEEESTHHHHHHTT--CEEEECSGGGTTCTTCCSCTTCCCCCGGGGSHHH
T ss_pred EEEEccCCCchhHHHHHHHHHHHHHHCCCEEEEEecChHHhcCC--CEEECCHHHHhhHHhCCCCeeccCCCCCCCCHHH
Confidence 89999999999999999999999999999999999999999999 9999999999999999999999999999988999
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
+++++++|++++||+||+||||||+++|++|+|+ +++|||||||||||+++||+|||
T Consensus 83 ~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~-----------------------~i~vvgiPkTIDNDl~~td~t~G 139 (320)
T 1pfk_A 83 RAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM-----------------------GFPCIGLPGTIDNDIKGTDYTIG 139 (320)
T ss_dssp HHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT-----------------------TCCEEEEEBCTTCCCTTCSCCBT
T ss_pred HHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh-----------------------CCCEEEEeccccCCCCCCcCCCC
Confidence 9999999999999999999999999999999852 79999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
||||+++++++|++++++|.||+||||||+|||++
T Consensus 140 fdTA~~~~~~aid~i~~ta~s~~rv~iVEvMGR~a 174 (320)
T 1pfk_A 140 FFTALSTVVEAIDRLRDTSSSHQRISVVEVMGRYC 174 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCCcCH
Confidence 99999999999999999999999999999999986
No 2
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=1.4e-60 Score=419.15 Aligned_cols=170 Identities=42% Similarity=0.616 Sum_probs=165.8
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
+||+||||||||||++|+++++++.++|++||||++||+||+++ ++++|+|++++.|.++|||+|||+|+++++++++
T Consensus 4 i~IltsGGdapGmNaair~vv~~a~~~g~~v~Gi~~G~~GL~~~--~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~~~ 81 (319)
T 1zxx_A 4 IGILTSGGDAPGMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAG--DIFPLESEDVAHLINVSGTFLYSARYPEFAEEEG 81 (319)
T ss_dssp EEEEECSSCCTTHHHHHHHHHHHHHTTTCEEEEECTHHHHHHHT--CEEECCGGGGTTCTTCCSCTTCCCCCGGGTSHHH
T ss_pred EEEEccCCCchhHHHHHHHHHHHHHHCCCEEEEEccChHHHcCC--CEEECCHHHHHhHHhCCCcccccCCCCccCCHHH
Confidence 89999999999999999999999999999999999999999999 9999999999999999999999999999988899
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
+++++++|++++||+||+||||||+++|++|+|+ +++|||||||||||+++||+|||
T Consensus 82 ~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~-----------------------~i~vvgiPkTIDNDl~~td~t~G 138 (319)
T 1zxx_A 82 QLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH-----------------------GFNSIGLPGTIDNDIPYTDATIG 138 (319)
T ss_dssp HHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT-----------------------TCCEEEEEEETTCCCTTCSCCEE
T ss_pred HHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh-----------------------CCCEEEEeecccCCCCCCcCCCC
Confidence 9999999999999999999999999999999852 79999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
||||+++++++|++++++|.||+||||||+|||++
T Consensus 139 fdTA~~~~~~aid~i~~ta~s~~rv~iVEvMGR~a 173 (319)
T 1zxx_A 139 YDTACMTAMDAIDKIRDTASSHHRVFIVNVMGRNC 173 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCCCCH
Confidence 99999999999999999999999999999999986
No 3
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=2.1e-60 Score=455.18 Aligned_cols=195 Identities=66% Similarity=1.069 Sum_probs=190.9
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
|||+||||||||||++|++++++++++|++||||++||+||+++.+++++|+|++++.|.++|||+|||+|+++++++++
T Consensus 18 IaIltsGGdaPGmNaaIravvr~a~~~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGTiLGSsR~~~f~~~~~ 97 (762)
T 3o8l_A 18 IAVLTSGGDAQGMNAAVRAVVRVGIFTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSARCKDFREREG 97 (762)
T ss_dssp EEEECCSSCCTTHHHHHHHHHHHHHHTTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSCSSCCCCCCGGGSHHH
T ss_pred EEEEccCCCchhHhHHHHHHHHHHHHCCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCccccCCCCCcccCHHH
Confidence 79999999999999999999999999999999999999999998557999999999999999999999999999988999
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
+++++++|++++||+||+||||||+++|++|+|+|+++|+||.+.++|++++++++++++|||||||||||+++||+|||
T Consensus 98 ~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiG 177 (762)
T 3o8l_A 98 RLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIG 177 (762)
T ss_dssp HHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSSCSCCBT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCCCcCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
||||+++++++|++++++|.||+|+||||+|||++
T Consensus 178 fdTA~~~i~eaid~i~~tA~Sh~Rv~iVEvMGR~a 212 (762)
T 3o8l_A 178 TDSALHRITEIVDAITTTAQSHQRTFVLEVMGRHC 212 (762)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSCCEEEEEECCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhcCccEEEEEeCCcch
Confidence 99999999999999999999999999999999986
No 4
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-59 Score=450.59 Aligned_cols=195 Identities=51% Similarity=0.873 Sum_probs=189.4
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCC-CCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGG-DNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~-~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
|||+||||||||||++|++++++++++|++||||++||+||++++ ..+.+|+|++|+.|.++|||+|||+|++++.+++
T Consensus 6 IgIltsGGdapGmNaaIravvr~a~~~g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~~~~~~ 85 (766)
T 3o8o_B 6 IAVMTSGGDAPGMNSNVRAIVRSAIFKGCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTARCMEFKKRE 85 (766)
T ss_dssp EEEEEESSCCTTHHHHHHHHHHHHHHHTCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSCTTCCCCCSGGGSHH
T ss_pred EEEEeeCCCchhHHHHHHHHHHHHHHCCCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCceeccCCCCcccCHH
Confidence 799999999999999999999999999999999999999999983 2388999999999999999999999999998888
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTI 160 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~ 160 (197)
.+++++++|++++||+||+||||||+++|++|+|+|+++++||.++++|++++++++.+++|||||||||||+++||+||
T Consensus 86 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~gTD~Ti 165 (766)
T 3o8o_B 86 GRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATI 165 (766)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTTCSCCB
T ss_pred HHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 161 GTDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 161 GfdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
|||||+++++++|++++++|.||+||||||+|||++
T Consensus 166 GfdTA~~~i~eaid~i~~tA~Sh~RvfvVEvMGR~a 201 (766)
T 3o8o_B 166 GAYSALDRICKAIDYVEATANSHSRAFVVEVMGRNC 201 (766)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCTTC
T ss_pred ChhHHHHHHHHHHHHHHhhhhccCceEEEEcCCcch
Confidence 999999999999999999999999999999999986
No 5
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-60 Score=451.89 Aligned_cols=195 Identities=54% Similarity=0.891 Sum_probs=190.1
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
|||+||||||||||++|++++++++++|++||||++||+||+++++++.+|+|++|+.|.++|||+|||+|++++.+++.
T Consensus 8 IgIltsGGdaPGmNaaIravvr~a~~~g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~f~~~~~ 87 (787)
T 3o8o_A 8 IAVMTSGGDSPGMNAAVRAVVRTGIHFGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTARSMEFRKREG 87 (787)
T ss_dssp EEEEEESSCCTTHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSCTTCCCCCSGGGSHHH
T ss_pred EEEEeeCCCchhHHHHHHHHHHHHHHCCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCceeccCCCCcccCHHH
Confidence 79999999999999999999999999999999999999999998546999999999999999999999999999988899
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
+++++++|++++||+||+||||||+++|++|+++|+++++||.++++|++++++++.+++|||||||||||+++||+|||
T Consensus 88 ~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~gTD~TiG 167 (787)
T 3o8o_A 88 RRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIG 167 (787)
T ss_dssp HHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTTSSCCEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
||||+++++++|++++++|.||+||||||+|||++
T Consensus 168 fdTAl~~i~eaid~i~~tA~Sh~RvfvVEVMGR~a 202 (787)
T 3o8o_A 168 AYSALERICEMVDYIDATAKSHSRAFVVEVMGRHC 202 (787)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCTTC
T ss_pred cHHHHHHHHHHHHHHHhhhhccCceEEEEcCCcch
Confidence 99999999999999999999999999999999986
No 6
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=1.5e-59 Score=412.75 Aligned_cols=170 Identities=48% Similarity=0.750 Sum_probs=165.8
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||||||||||||||++|+++++++++++++||||++||+||+++ ++++|+|++++.|.++|||+|||+|+++++++++
T Consensus 4 IgIltsGG~~pG~Na~ir~vv~~a~~~g~~v~Gi~~G~~Gl~~~--~~~~l~~~~v~~i~~~GGt~lgtsR~~~~~~~e~ 81 (319)
T 4a3s_A 4 IGVLTSGGDSPGMNAAVRAVVRKAIYHDVEVYGIYNGYAGLISG--KIEKLELGSVGDIIHRGGTKLYTARCPEFKTVEG 81 (319)
T ss_dssp EEEEEESSCCTTHHHHHHHHHHHHHHTTCEEEEECSTTHHHHHC--CEEEECGGGGTTCTTCCSCTTCCCCCHHHHSHHH
T ss_pred EEEECcCCCcHHHHHHHHHHHHHHHHCCCEEEEEecchHHHcCC--CeecCCHHHHHhHHhcCCCccccCCCCccccHHH
Confidence 79999999999999999999999999999999999999999999 9999999999999999999999999999989999
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
+++++++|++++||+||+||||||+++|++|+|+ +++|||||||||||+++||+|||
T Consensus 82 ~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~-----------------------~i~vigiPkTIDNDl~~td~t~G 138 (319)
T 4a3s_A 82 REKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH-----------------------GFPCVGVPGTIDNDIPGTDFTIG 138 (319)
T ss_dssp HHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT-----------------------TCCEEEEEEETTCCCTTCSCCEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc-----------------------CCcEEEeeccccCCCCCCCCCCC
Confidence 9999999999999999999999999999999863 78999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
||||++++++++++++++|+||+||||||+|||++
T Consensus 139 fdTA~~~~~~ai~~i~~~a~s~~rv~ivEvMGR~a 173 (319)
T 4a3s_A 139 FDTALNTVIDAIDKIRDTATSHERTYVIEVMGRHA 173 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCTTC
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCeEEEEeCCcch
Confidence 99999999999999999999999999999999986
No 7
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3.8e-59 Score=452.14 Aligned_cols=195 Identities=55% Similarity=0.890 Sum_probs=180.4
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCC-CCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGG-DNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~-~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
|||+||||||||||++|++++++++++|++||||++||+||++++ ..+.+|+|++|+.|.++|||+|||+|++++++++
T Consensus 184 IgIlTsGGdaPGmNAaIRaVVr~a~~~g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGTiLGSsR~~~f~~~~ 263 (941)
T 3opy_B 184 IGVMTSGGDSPGMNPFVRAVVRAGIYKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCKEFRERS 263 (941)
T ss_dssp EEEEECSSCCTTHHHHHHHHHHHHHHTTCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSCSSCCCCCSGGGSHH
T ss_pred EEEEeeCcCchhHHHHHHHHHHHHHHCCCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCceeccCCCCcccCHH
Confidence 799999999999999999999999999999999999999999983 2389999999999999999999999999998888
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTI 160 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~ 160 (197)
.+++++++|++++||+||+||||||+++|++|+++|+++++||.++++|++++++++.+++|||||||||||+++||+||
T Consensus 264 ~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~gTD~Ti 343 (941)
T 3opy_B 264 GRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDATI 343 (941)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCSSCSSCE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 161 GTDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 161 GfdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
|||||+++++++|++++++|.||+||||||+|||++
T Consensus 344 GfdTAv~~i~eaId~I~~tA~Sh~RvfvVEVMGR~a 379 (941)
T 3opy_B 344 GAFSSLDRICRAIDYIDATANSHSRAFIVEVMGRHC 379 (941)
T ss_dssp EHHHHHHHHHHHHHHHHSCC-CCSEEEEEECCCSSC
T ss_pred ChHHHHHHHHHHHHHHHhhhhccCceEEEEcCCCcc
Confidence 999999999999999999999999999999999986
No 8
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=7e-59 Score=450.01 Aligned_cols=195 Identities=56% Similarity=0.940 Sum_probs=182.0
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
|||+||||||||||++|++++++++++|++||||++||+||+++++++.+|+|++|+.|.++|||+|||+|++++++++.
T Consensus 213 IaIlTSGGdaPGmNAaIRaVVr~a~~~G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGTiLGTsR~~~f~~~e~ 292 (989)
T 3opy_A 213 IAIITSGGDAPGMNAAVRAVTRAGIFYGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKEFRERWG 292 (989)
T ss_dssp EEEEECSSCCTTHHHHHHHHHHHHHHTTEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSCSSCCCCSSSTTSHHH
T ss_pred EEEEeeCCCchhHHHHHHHHHHHHHHCCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCccccCCCCCcccchhH
Confidence 79999999999999999999999999999999999999999998446999999999999999999999999999988899
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
+++++++|++++||+||+||||||+++|++|+++|+++++||.+.++++++.++++.+++|||||||||||+++||+|||
T Consensus 293 ~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~gTD~TiG 372 (989)
T 3opy_A 293 RLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIG 372 (989)
T ss_dssp HHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTTCSCCEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhccCCcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~~ 196 (197)
||||+++++++|++++++|.||+||||||+|||++
T Consensus 373 FdTAl~~i~eaId~I~~TA~Sh~RvfVVEVMGR~a 407 (989)
T 3opy_A 373 AYSSLERIIELVDYIDATAASHSRAFVVEVMGRHC 407 (989)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCTTEEEEEECCCSSC
T ss_pred hhhHHHHHHHHHHHHHhhhhccCceEEEEcCCCch
Confidence 99999999999999999999999999999999986
No 9
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=2.4e-56 Score=404.37 Aligned_cols=176 Identities=15% Similarity=0.161 Sum_probs=159.9
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCC---EEEEEcCcchhhccCCCCeEECC---hhhhhhhhhhcCceecccCCCC
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGC---KVFFIKEGYQGMVDGGDNIVEAN---WSSVSSIIHKGGTVIGSARCSD 75 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~---~v~g~~~G~~GL~~~~~~~~~l~---~~~v~~~~~~gGs~LgssR~~~ 75 (197)
+||+||||||||||++|++++++++++++ +||||++||+||+++ ++.+|+ |++++.|.++|||+|||+|+++
T Consensus 6 i~VltsGGdapGmNa~Ir~vv~~a~~~g~~~~~V~Gi~~G~~GLl~~--~~~~l~~~~~~~v~~i~~~GGtiLGSsR~~~ 83 (419)
T 3hno_A 6 AFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTE--DLIDTGQESDAAISALRYTPSGAFGSCRYKL 83 (419)
T ss_dssp EEEEECSSCCSSHHHHHHHHHHHHHHHCSSCCCEEEETTTHHHHHTT--CEEEGGGSCHHHHHHGGGCCSCTTCCCCCC-
T ss_pred EEEEccCCChHHHHHHHHHHHHHHHHcCCCCcEEEEEeCChHHhCCC--CcccCccccHHHHHHHHcCCCceecCCCCCc
Confidence 79999999999999999999999999998 999999999999999 999985 4589999999999999999998
Q ss_pred c---cChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccC
Q psy5987 76 F---REKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 76 ~---~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDND 152 (197)
+ .+++.+++++++|++++||+||+||||||+++|++|+|+ +++++.+++|||||||||||
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~-----------------~~~~g~~i~vIGiPkTIDND 146 (419)
T 3hno_A 84 KSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQL-----------------SGTLGYPIQAIHVPKTVDND 146 (419)
T ss_dssp -----CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHH-----------------HHHTTCCCEEEEEECCTTCC
T ss_pred cccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHH-----------------HHHhCCCccEEEecccccCC
Confidence 5 578899999999999999999999999999999999864 45667789999999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhhc----cCCcEEEEEecCCCC
Q psy5987 153 FCGTDMTIGTDSALHRIIEAIDAIVSTAY----SHQRTFIMEVMGRLK 196 (197)
Q Consensus 153 i~g~d~s~GfdTA~~~~~~~i~~l~~~a~----S~~rv~ivE~mGr~~ 196 (197)
+++||+|||||||++++++.++++..|++ ||+||||||+|||++
T Consensus 147 l~~tD~t~GFdTA~~~~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~a 194 (419)
T 3hno_A 147 LPITDCCPGFGSVAKYIAVSTLEASFDVASMSATSTKVFVLEVMGRHA 194 (419)
T ss_dssp CSSSSSCTTHHHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEECCSSC
T ss_pred CcCCCCCCCchHHHHHHHHHHHHHHHHHHhhccCCCcEEEEEcCCcCh
Confidence 99999999999999999999999844433 345999999999986
No 10
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=1.5e-55 Score=404.41 Aligned_cols=171 Identities=27% Similarity=0.419 Sum_probs=160.1
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHH-cCC-EEEEEcCcchhhcc---CCCCeEECChhhhhhhhhhcCceecccCCCCc
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIY-LGC-KVFFIKEGYQGMVD---GGDNIVEANWSSVSSIIHKGGTVIGSARCSDF 76 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~-~g~-~v~g~~~G~~GL~~---~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~ 76 (197)
+||+||||||||||++|+++++++.+ .++ +||||++||+||++ + ++++|+|++++.|.++|||+|||+|+++.
T Consensus 100 IgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~--~~~~L~~~~V~~i~~~GGTiLGTsR~~~~ 177 (487)
T 2hig_A 100 IGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQ--TAIELHRGRVTNIHHYGGTILGSSRGPQD 177 (487)
T ss_dssp EEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHT--TCEEECHHHHTTGGGSSSCSSCCCCSCCC
T ss_pred EEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCC--CEEECCHHHHHHHHhCCCCeeccCCCCCC
Confidence 79999999999999999999999975 677 99999999999974 5 89999999999999999999999999752
Q ss_pred cChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCC
Q psy5987 77 REKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGT 156 (197)
Q Consensus 77 ~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~ 156 (197)
.++++++|++++||+||+||||||+++|++|+++ +++++.+++|||||||||||+++|
T Consensus 178 -----~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~-----------------~~~~g~~i~vVGIPkTIDNDl~gT 235 (487)
T 2hig_A 178 -----PKEMVDTLERLGVNILFTVGGDGTQRGALVISQE-----------------AKRRGVDISVFGVPKTIDNDLSFS 235 (487)
T ss_dssp -----HHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHH-----------------HHHHTCCCEEEEEECCTTSSCCCS
T ss_pred -----HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHH-----------------HHHhCCCceEEeccccccCCCCCC
Confidence 4599999999999999999999999999999864 456678899999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhccC-CcEEEEEecCCCC
Q psy5987 157 DMTIGTDSALHRIIEAIDAIVSTAYSH-QRTFIMEVMGRLK 196 (197)
Q Consensus 157 d~s~GfdTA~~~~~~~i~~l~~~a~S~-~rv~ivE~mGr~~ 196 (197)
|+|||||||+++++++|+++++||.|| +||||||+|||++
T Consensus 236 D~T~GFdTAv~~~~eaId~i~~tA~Sh~~rv~vVEVMGR~a 276 (487)
T 2hig_A 236 HRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDS 276 (487)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEEECCSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCCCH
Confidence 999999999999999999999999999 5999999999986
No 11
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=5.3e-55 Score=406.82 Aligned_cols=175 Identities=21% Similarity=0.311 Sum_probs=164.1
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHH--HHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcC-ceecccCCCCccC
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMG--IYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGG-TVIGSARCSDFRE 78 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~--~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gG-s~LgssR~~~~~~ 78 (197)
|||+||||||||||++|+++++++ .+.+++||||++||+||+++ ++++|+|++++.|+++|| ++|||+|++ +.+
T Consensus 75 igIltsGGdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~i~~~GGstiLGssR~~-~~~ 151 (555)
T 2f48_A 75 IGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLEN--DKIELTESLINSYRNTGGFDIVSSGRTK-IET 151 (555)
T ss_dssp EEEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTT--CEEEECHHHHHHHTTCCSSTTTCCBCCC-CCS
T ss_pred EEEECcCCCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCC--CEEECCHHHHHHHHhCCCCcCCCcCCCC-CCC
Confidence 799999999999999999999995 56789999999999999999 999999999999999999 699999998 567
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCC--
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGT-- 156 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~-- 156 (197)
++++++++++|++++||+||+||||||+++|++|+|+ +++++.+++|||||||||||++++
T Consensus 152 ~e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~-----------------~~~~~~~i~vIGiPkTIDNDl~~t~i 214 (555)
T 2f48_A 152 EEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEY-----------------FKKNGENIQVIGVPKTIDADLRNDHI 214 (555)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH-----------------HHHTTCCCEEEEEEEETTCCCCCSSC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHH-----------------HHHhCCCCcEEEeccccCCCCCCCcC
Confidence 8899999999999999999999999999999999965 356678999999999999999987
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhcc-CCcEEEEEecCCCC
Q psy5987 157 DMTIGTDSALHRIIEAIDAIVSTAYS-HQRTFIMEVMGRLK 196 (197)
Q Consensus 157 d~s~GfdTA~~~~~~~i~~l~~~a~S-~~rv~ivE~mGr~~ 196 (197)
|+|||||||+++++++|++++.||+| ++||||||+|||++
T Consensus 215 d~tiGFdTA~~~~~~aId~i~~da~s~~~rv~iVEvMGR~a 255 (555)
T 2f48_A 215 EISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSA 255 (555)
T ss_dssp CCCEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCTTS
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCcCH
Confidence 99999999999999999999888887 56899999999986
No 12
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=1.4e-53 Score=408.20 Aligned_cols=174 Identities=32% Similarity=0.514 Sum_probs=162.9
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
|||+||||||||||++|++++++++++|++||||++||+||+++ ++.+|+|++++.|.++|||+|||+|.++ +++
T Consensus 403 IgIltsGGdapGmNaaIravv~~~~~~g~~v~Gi~~G~~GL~~~--~~~~l~~~~v~~i~~~GGt~LGTsR~~~---~~~ 477 (762)
T 3o8l_A 403 VAVMNVGAPAAGMNAAVRSTVRIGLIQGNRVLVVHDGFEGPAKG--QIEEAGWSYVGGWTGQGGSKLGSKRTLP---KKS 477 (762)
T ss_dssp EEEEEESSCCTTHHHHHHHHHHHHHHHTCEEEEESSTTHHHHHT--CEEECCTTTTSSCTTCCSCSSCEECCCS---GGG
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHHHCCCEEEEEeccccccccC--CEEECCHHHhhhHHhCCCceeecCCCCc---HHH
Confidence 79999999999999999999999999999999999999999999 9999999999999999999999999876 368
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
+++++++|++++||+||+||||||+++|++|++++ .+....+++||+||||||||+++||+|||
T Consensus 478 ~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~----------------~~~~~~~i~vvgiPkTIDNDl~gTD~TiG 541 (762)
T 3o8l_A 478 FEQISANITKFNIQGLVIIGGFEAYTGGLELMEGR----------------KQFDELCIPFVVIPATVSNNVPGSDFSVG 541 (762)
T ss_dssp HHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHH----------------HHCSTTCSCEEEEEBCTTCCCTTCSCCBT
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHH----------------HhccccCCCEEeeccccCCCCCCCcCCCC
Confidence 99999999999999999999999999999998642 11122479999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhc-cCCcEEEEEecCCCC
Q psy5987 162 TDSALHRIIEAIDAIVSTAY-SHQRTFIMEVMGRLK 196 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~-S~~rv~ivE~mGr~~ 196 (197)
||||+++++++|+++++||. ||+||||||+|||++
T Consensus 542 fdTA~~~~~~aid~i~~tA~ssh~rv~vVEvMGR~a 577 (762)
T 3o8l_A 542 ADTALNTICTTCDRIKQSAAGTKRRVFIIETMGGYC 577 (762)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSSCEEEEEEECSTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCcch
Confidence 99999999999999999997 589999999999986
No 13
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-53 Score=407.50 Aligned_cols=174 Identities=23% Similarity=0.406 Sum_probs=161.4
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhc-cCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMV-DGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~-~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
|||+||||||||||++|++++++++++|++||||++||+||+ ++ ++++|+|++|+.|.++|||+|||+|++++ +
T Consensus 396 IgIltsGGdapGmNaaIravv~~a~~~g~~v~Gi~~G~~GL~~~~--~~~~L~~~~v~~i~~~GGt~LGTsR~~~~---~ 470 (787)
T 3o8o_A 396 IGIVHVGAPSAALNAATRAATLYCLSHGHKPYAIMNGFSGLIQTG--EVKELSWIDVENWHNLGGSEIGTNRSVAS---E 470 (787)
T ss_dssp EEEEEESSCCSSHHHHHHHHHHHHHHHTCEEEEETTHHHHHHHHC--CEEECCTTTTTTGGGCCSCTTCCBCCCGG---G
T ss_pred EEEEccCCCCHHHHHHHHHHHHHHHHCCCEEEEEccChhhhCCCC--CEEECCHHHHhhhhcCCCceeccCCCCch---h
Confidence 799999999999999999999999999999999999999999 78 99999999999999999999999999875 3
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTI 160 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~ 160 (197)
++++++++|++++||+||+||||||+.+|++|++++ ......+++||+||||||||+++||+||
T Consensus 471 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~----------------~~~~~~~i~vIgiPkTIDNDl~gTD~t~ 534 (787)
T 3o8o_A 471 DLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGR----------------TQHPIFNIPMCLIPATVSNNVPGTEYSL 534 (787)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHT----------------TTCGGGGSCEEEEEBCTTCCCTTCSCCB
T ss_pred hHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHH----------------HhcCccCCceeecccccccCCCCCcCCC
Confidence 678899999999999999999999999999998642 0111237999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHhhcc-CCcEEEEEecCCCC
Q psy5987 161 GTDSALHRIIEAIDAIVSTAYS-HQRTFIMEVMGRLK 196 (197)
Q Consensus 161 GfdTA~~~~~~~i~~l~~~a~S-~~rv~ivE~mGr~~ 196 (197)
|||||+++++++|++++++|.| |+||||||+|||++
T Consensus 535 GfdTA~~~~~eaid~i~~ta~ss~~rv~iVEvMGR~a 571 (787)
T 3o8o_A 535 GVDTCLNALVNYTDDIKQSASATRRRVFVCEVQGGHS 571 (787)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSSEEEEEEECCTTC
T ss_pred CchHHHHHHHHHHHHHHHHhhccCCcEEEEEeCCCCc
Confidence 9999999999999999999876 99999999999986
No 14
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-53 Score=405.23 Aligned_cols=175 Identities=21% Similarity=0.371 Sum_probs=161.3
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhcc-CCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVD-GGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~-~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
|||+||||||||||++|++++++++++|++||||++||+||++ + ++.+|+|++|+.|.++|||+|||+|++++ ++
T Consensus 396 IgIltsGGdapGmNaaIravv~~a~~~g~~v~Gi~~G~~GL~~~~--~~~~l~~~~v~~i~~~GGt~LGTsR~~~~--~~ 471 (766)
T 3o8o_B 396 IAIVNVGAPAGGINSAVYSMATYCMSQGHRPYAIYNGWSGLARHE--SVRSLNWKDMLGWQSRGGSEIGTNRVTPE--EA 471 (766)
T ss_dssp EEEEEESSCCTTHHHHHHHHHHHHHHHTCEEEEETTHHHHHHHHC--CEEECCGGGGTTGGGCCSCTTCCCCCCGG--GG
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHHHCCCEEEEEecChHhhCCCC--ceEECCHHHHhhHhhCCCceEccCCCCCc--cc
Confidence 7999999999999999999999999999999999999999997 6 89999999999999999999999999875 34
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTI 160 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~ 160 (197)
++++++++|++++||+||+||||||+++|++|+++. ......+++||+||||||||+++||+||
T Consensus 472 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~----------------~~~~~~~i~vvgiPkTIDNDl~gTD~T~ 535 (766)
T 3o8o_B 472 DLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERAR----------------ESYPAFRIPMVLIPATLSNNVPGTEYSL 535 (766)
T ss_dssp CHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTT----------------TTCGGGCSCCCEEEBCTTCCCSSCSCCB
T ss_pred hHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHH----------------HhcCccCCcEEeeccccccCCCCCCCCC
Confidence 578999999999999999999999999999998641 0111247999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHhhcc-CCcEEEEEecCCCC
Q psy5987 161 GTDSALHRIIEAIDAIVSTAYS-HQRTFIMEVMGRLK 196 (197)
Q Consensus 161 GfdTA~~~~~~~i~~l~~~a~S-~~rv~ivE~mGr~~ 196 (197)
|||||+++++++|++++++|.| |+||||||+|||++
T Consensus 536 GfdTA~~~~~~aid~i~~ta~ss~~rv~iVEvMGR~a 572 (766)
T 3o8o_B 536 GSDTALNALMEYCDVVKQSASSTRGRAFVVDCQGGNS 572 (766)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSSEEEEEEECCTTC
T ss_pred ChhHHHHHHHHHHHHHHHHhhccCCcEEEEEeCCCch
Confidence 9999999999999999999887 99999999999986
No 15
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=8.2e-53 Score=407.97 Aligned_cols=175 Identities=23% Similarity=0.358 Sum_probs=160.5
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhc-cCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMV-DGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~-~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
|||+||||||||||++|++++++++++|++||||++||+||+ ++ ++++|+|++|++|.++|||+|||+|++++. +
T Consensus 574 IgIltsGGdapGmNaaIravv~~a~~~g~~V~Gi~~G~~GL~~~~--~~~~L~~~~V~~i~~~GGTiLGTsR~~~~~--~ 649 (941)
T 3opy_B 574 IAIINVGAPAGGMNSAVYSMATYCMSRGHVPYAIHNGFSGLARHE--SVRSINWLDIEGWGSLGGSEIGTNRTLPND--A 649 (941)
T ss_dssp EEEEEESSCCTTHHHHHHHHHHHHHHHTCEEEEETTHHHHHHHHC--CEEECCTTTTTTGGGCCSCSSCEECCCTTT--S
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHHHCCCEEEEEccchHhhCcCC--cEEECCHHHHhChhhCCCcEeccCCCCccc--c
Confidence 799999999999999999999999999999999999999999 78 999999999999999999999999998763 3
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTI 160 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~ 160 (197)
++.+++++|++++||+||+||||||+++|++|+++. .+....+++|||||||||||+++||+||
T Consensus 650 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~----------------~~~~~~~i~vVGIPkTIDNDl~gTD~Ti 713 (941)
T 3opy_B 650 DIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERAR----------------INYPSLRIPLVLIPATISNNVPGTEYSL 713 (941)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGG----------------GTCGGGCSCEEEEEBCSSCCCTTCSCCB
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHH----------------HhcCccCCcEEeeeccccCCCCCCCCCC
Confidence 577899999999999999999999999999998641 0111247999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHhhcc-CCcEEEEEecCCCC
Q psy5987 161 GTDSALHRIIEAIDAIVSTAYS-HQRTFIMEVMGRLK 196 (197)
Q Consensus 161 GfdTA~~~~~~~i~~l~~~a~S-~~rv~ivE~mGr~~ 196 (197)
|||||+++++++|++++++|.| |+||||||+|||++
T Consensus 714 GfdTA~~~i~eaid~i~~tA~ssh~RvfiVEvMGR~a 750 (941)
T 3opy_B 714 GSDTCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNS 750 (941)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHC-CEEEEEEECSTTC
T ss_pred ChHHHHHHHHHHHHHHHHHhhhcCCcEEEEEeCCcch
Confidence 9999999999999999998875 99999999999986
No 16
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.6e-52 Score=405.63 Aligned_cols=172 Identities=26% Similarity=0.460 Sum_probs=161.0
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhc-cCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMV-DGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~-~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
|||+||||||||||++|++++++++++|++||||++||+||+ ++ ++++|+|++++.|.++|||+|||+|..++ +
T Consensus 601 IgIltsGGdaPGmNAaIravV~~a~~~g~~V~Gi~~G~~GLl~~~--~~~~L~~~~V~~i~~~GGTiLGTsR~~~~---~ 675 (989)
T 3opy_A 601 IAIIHVGAPTSALNPATRVATLNSLAKGHRVFAIRNGFAGLIRHG--AVRELNWIDVEDWHNTGGSEIGTNRSLPS---D 675 (989)
T ss_dssp EEEEEESSCCTTHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHHC--CEEEECTTTTTTTTTCCSCSSCCBCCCGG---G
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEEccChhhhcCCC--cEEECCHHHhhCHhhCCCcEeccCCCCch---h
Confidence 799999999999999999999999999999999999999999 88 99999999999999999999999998764 5
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhc--CCceEEEeeeecccCCCCCCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKY--CHLHIAGLVGSIDNDFCGTDM 158 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~--~~i~vvgiPkTIDNDi~g~d~ 158 (197)
++++++++|++++||+||+||||||+++|++|+++ ++++ .+++||+||||||||+++||+
T Consensus 676 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------------------~~~y~~~~I~vVGIPkTIDNDl~gTD~ 737 (989)
T 3opy_A 676 DMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAA------------------RAQYPIFNIPMCCLPATVSNNVPGTEY 737 (989)
T ss_dssp GHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH------------------TTTCGGGCSCEEEEEBCSSCCCTTCSC
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHH------------------HhhCCCcCCcEEeccccccCCCCCCcC
Confidence 78899999999999999999999999999999864 1222 379999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHhhcc-CCcEEEEEecCCCC
Q psy5987 159 TIGTDSALHRIIEAIDAIVSTAYS-HQRTFIMEVMGRLK 196 (197)
Q Consensus 159 s~GfdTA~~~~~~~i~~l~~~a~S-~~rv~ivE~mGr~~ 196 (197)
|||||||++.++++|++++.+|.| |+||||||+|||++
T Consensus 738 TiGFdTAvn~~~eaId~i~~tA~ssh~RvfIVEVMGR~a 776 (989)
T 3opy_A 738 SLGSDTCLNTLSGYCDAVKQSASASRRRTFVVEVQGGYS 776 (989)
T ss_dssp CBTHHHHHHHHHHHHHHHHHHTC-CCCSEEEEEECCTTC
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCcch
Confidence 999999999999999999999985 99999999999986
No 17
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=95.53 E-value=0.019 Score=48.38 Aligned_cols=74 Identities=18% Similarity=0.116 Sum_probs=40.1
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
++|+.-.. .|..+..+..+.+.+..+|++++......+++-. .+. ..+ .
T Consensus 8 i~ii~np~-~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~-------------------~~~-------~~~-~--- 56 (292)
T 2an1_A 8 IGIVGHPR-HPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQL-------------------KNV-------PTG-T--- 56 (292)
T ss_dssp EEEECC--------CHHHHHHHHHHHTTCEEEEEHHHHHHTTC-------------------SSC-------CEE-C---
T ss_pred EEEEEcCC-CHHHHHHHHHHHHHHHHCCCEEEEecchhhhccc-------------------ccc-------ccc-c---
Confidence 45665544 3667777888888888888887765433222100 000 000 0
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHH
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANL 111 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~ 111 (197)
.+. ...+.|.+|++|||||+..|..
T Consensus 57 ~~~-----~~~~~D~vi~~GGDGT~l~a~~ 81 (292)
T 2an1_A 57 LAE-----IGQQADLAVVVGGDGNMLGAAR 81 (292)
T ss_dssp HHH-----HHHHCSEEEECSCHHHHHHHHH
T ss_pred hhh-----cccCCCEEEEEcCcHHHHHHHH
Confidence 111 2346899999999999988653
No 18
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=95.09 E-value=0.024 Score=47.58 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhC-------CcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCC
Q psy5987 82 RLKAAKNLIDRG-------ITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFC 154 (197)
Q Consensus 82 ~~~~~~~l~~~~-------I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~ 154 (197)
.+++.+.|++++ .|.+|++|||||+..|.... .....+++++|||.
T Consensus 17 ~~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~--------------------~~~~~~~PilGIn~------- 69 (272)
T 2i2c_A 17 RLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQY--------------------EERLDEIAFIGIHT------- 69 (272)
T ss_dssp HHHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHT--------------------GGGTTTCEEEEEES-------
T ss_pred HHHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHH--------------------hhcCCCCCEEEEeC-------
Confidence 455566666665 49999999999998765321 11113789999984
Q ss_pred CCCCCCCchhHH--HHHHHHHHHHHHh
Q psy5987 155 GTDMTIGTDSAL--HRIIEAIDAIVST 179 (197)
Q Consensus 155 g~d~s~GfdTA~--~~~~~~i~~l~~~ 179 (197)
| +.||.+.+ +.+.++++.+...
T Consensus 70 G---~lgfl~~~~~~~~~~~l~~l~~g 93 (272)
T 2i2c_A 70 G---HLGFYADWRPAEADKLVKLLAKG 93 (272)
T ss_dssp S---SCCSSCCBCGGGHHHHHHHHHTT
T ss_pred C---CCCcCCcCCHHHHHHHHHHHHcC
Confidence 2 35555432 3345556665443
No 19
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=94.54 E-value=1.4 Score=35.23 Aligned_cols=124 Identities=9% Similarity=0.007 Sum_probs=74.7
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++.+.+...|+++.-+. +.. +++.
T Consensus 8 Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----------------------------------~~~----~~~~ 49 (291)
T 3l49_A 8 IGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALD----------------------------------AGR----NDQT 49 (291)
T ss_dssp EEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEE----------------------------------CTT----CHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEc----------------------------------CCC----CHHH
Confidence 68888877778888888888888888887664331 000 1234
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIG 161 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~G 161 (197)
.....+.+...++|++|+.+.+.+... ..+ ++ +.+ .+++||.+ |.+.+....+++
T Consensus 50 ~~~~~~~l~~~~vdgiIi~~~~~~~~~-~~~--------~~----------~~~--~~iPvV~~----~~~~~~~~~~V~ 104 (291)
T 3l49_A 50 QVSQIQTLIAQKPDAIIEQLGNLDVLN-PWL--------QK----------IND--AGIPLFTV----DTATPHAINNTT 104 (291)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCHHHHH-HHH--------HH----------HHH--TTCCEEEE----SCCCTTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhhH-HHH--------HH----------HHH--CCCcEEEe----cCCCCCcCceEe
Confidence 556788888899999999987643222 111 11 122 36777755 444443334566
Q ss_pred chhHHHHHHHHHHHHHHhhccCCcEEEE
Q psy5987 162 TDSALHRIIEAIDAIVSTAYSHQRTFIM 189 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~~~a~S~~rv~iv 189 (197)
+|-. .....+.+.+......|+++.++
T Consensus 105 ~D~~-~~g~~~~~~l~~~~~g~~~i~~i 131 (291)
T 3l49_A 105 SNNY-SIGAELALQMVADLGGKGNVLVF 131 (291)
T ss_dssp ECHH-HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cChH-HHHHHHHHHHHHHcCCCceEEEE
Confidence 6532 33334444455544567788776
No 20
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=91.92 E-value=0.04 Score=47.01 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=42.9
Q ss_pred HHHHHHHHHHh---------------CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEee
Q psy5987 82 RLKAAKNLIDR---------------GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLV 146 (197)
Q Consensus 82 ~~~~~~~l~~~---------------~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiP 146 (197)
.+++.+.|+++ +.|.+|++|||||+..|.... ... ++|+||.
T Consensus 42 ~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~aa~~~----------------------~~~-~PilGIN 98 (278)
T 1z0s_A 42 VKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKL----------------------KRC-PPIFGIN 98 (278)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHHHTTC----------------------SSC-CCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHHHHHHh----------------------CCC-CcEEEEC
Confidence 55666667666 458899999999996654221 012 8999997
Q ss_pred eecccCCCCCCCCCCchhHH--HHHHHHHHHHHH
Q psy5987 147 GSIDNDFCGTDMTIGTDSAL--HRIIEAIDAIVS 178 (197)
Q Consensus 147 kTIDNDi~g~d~s~GfdTA~--~~~~~~i~~l~~ 178 (197)
. | ++||.|.. +.+-+.++++..
T Consensus 99 ~-------G---~lGFLt~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 99 T-------G---RVGLLTHASPENFEVELKKAVE 122 (278)
T ss_dssp C-------S---SSCTTCCBBTTBCHHHHHHHHH
T ss_pred C-------C---CCccccccCHHHHHHHHHHHHh
Confidence 4 2 78888765 445566666654
No 21
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=91.92 E-value=4.2 Score=32.76 Aligned_cols=126 Identities=9% Similarity=0.076 Sum_probs=76.2
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
|+++......|=...++.++.+.+...|+++.-+. .+.. +.+.
T Consensus 7 I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---------------------------------~~~~----~~~~ 49 (305)
T 3g1w_A 7 YMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG---------------------------------AAQY----DIQE 49 (305)
T ss_dssp EEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE---------------------------------CSSS----CHHH
T ss_pred EEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC---------------------------------CCcC----CHHH
Confidence 67777777778888888888888888887665320 0010 2344
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCC--CCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGT--DMT 159 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~--d~s 159 (197)
..+.++.+...++|++|+.+-+.+... ..+ +++ ++ .+++||. +|++.+.. ..+
T Consensus 50 ~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~--------~~~----------~~--~~iPvV~----~~~~~~~~~~~~~ 104 (305)
T 3g1w_A 50 QITVLEQAIAKNPAGIAISAIDPVELT-DTI--------NKA----------VD--AGIPIVL----FDSGAPDSHAHSF 104 (305)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSTTTTH-HHH--------HHH----------HH--TTCCEEE----ESSCCTTSCCSCE
T ss_pred HHHHHHHHHHhCCCEEEEcCCCHHHHH-HHH--------HHH----------HH--CCCcEEE----ECCCCCCCceeEE
Confidence 567778888899999999987754211 111 111 11 3677774 45665542 356
Q ss_pred CCchhHHHHHHHHHHHHHHhhccCCcEEEEE
Q psy5987 160 IGTDSALHRIIEAIDAIVSTAYSHQRTFIME 190 (197)
Q Consensus 160 ~GfdTA~~~~~~~i~~l~~~a~S~~rv~ivE 190 (197)
+++|- ......+.+.|......|+++.++-
T Consensus 105 V~~d~-~~~g~~~~~~l~~~~~g~~~i~~i~ 134 (305)
T 3g1w_A 105 LGTNN-YNAGMNAAYKMAELLDGEGEVAVIT 134 (305)
T ss_dssp EECCH-HHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred ECcCH-HHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 67664 2333444445544444577887765
No 22
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=91.18 E-value=4.9 Score=32.15 Aligned_cols=66 Identities=9% Similarity=0.139 Sum_probs=46.2
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|=...++.++.+.+...|+++.-+. +.. +.+.
T Consensus 11 Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----------------------------------~~~----~~~~ 52 (291)
T 3egc_A 11 VGLIVSDIENVFFAEVASGVESEARHKGYSVLLAN----------------------------------TAE----DIVR 52 (291)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE----------------------------------CTT----CHHH
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEe----------------------------------CCC----CHHH
Confidence 67777776777777788888888777777665321 000 1234
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..+..+.+...++|++|+.+-+..
T Consensus 53 ~~~~~~~l~~~~vdgiIi~~~~~~ 76 (291)
T 3egc_A 53 EREAVGQFFERRVDGLILAPSEGE 76 (291)
T ss_dssp HHHHHHHHHHTTCSEEEECCCSSC
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCC
Confidence 556788888999999999988763
No 23
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=91.01 E-value=5.3 Score=32.20 Aligned_cols=68 Identities=3% Similarity=-0.037 Sum_probs=48.9
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++.+.+...|+++.-.. . .. +.+.+.
T Consensus 6 Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--------~--------------------------~~--~~~~~~ 49 (297)
T 3rot_A 6 YYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILA--------P--------------------------PG--ANDVPK 49 (297)
T ss_dssp EEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEEC--------C--------------------------SS--SCCHHH
T ss_pred EEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEEC--------C--------------------------CC--cCCHHH
Confidence 67888877788888899999988888887665321 0 00 012345
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..+.++.+...++|++|+.+-+..
T Consensus 50 ~~~~i~~l~~~~vdgiii~~~~~~ 73 (297)
T 3rot_A 50 QVQFIESALATYPSGIATTIPSDT 73 (297)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCSS
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHH
Confidence 567788888999999999887655
No 24
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=90.21 E-value=5.8 Score=31.38 Aligned_cols=118 Identities=9% Similarity=0.047 Sum_probs=62.2
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|=...++.++.+.+...|++++-+ .+.. +.+.
T Consensus 11 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~----------------------------------~~~~----~~~~ 52 (277)
T 3e61_A 11 IGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIG----------------------------------NSDN----DIKK 52 (277)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEE----------------------------------ECTT----CHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEE----------------------------------eCCC----CHHH
Confidence 6777766666777777777777777777655422 0110 1234
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHH-HHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGAN-LFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTI 160 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~-~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~ 160 (197)
..+..+.+...++|++|+.+.+ -.... .+ ++ .+++|| ++|++.+..+ ++
T Consensus 53 ~~~~~~~l~~~~~dgiIi~~~~--~~~~~~~l---------------------~~--~~iPvV----~~~~~~~~~~-~V 102 (277)
T 3e61_A 53 AQGYLATFVSHNCTGMISTAFN--ENIIENTL---------------------TD--HHIPFV----FIDRINNEHN-GI 102 (277)
T ss_dssp HHHHHHHHHHTTCSEEEECGGG--HHHHHHHH---------------------HH--C-CCEE----EGGGCC-------
T ss_pred HHHHHHHHHhCCCCEEEEecCC--hHHHHHHH---------------------Hc--CCCCEE----EEeccCCCCC-eE
Confidence 5667888889999999998822 11111 11 11 266776 5667766555 77
Q ss_pred CchhHHHHHHHHHHHHHHhhccCCcEEEEE
Q psy5987 161 GTDSALHRIIEAIDAIVSTAYSHQRTFIME 190 (197)
Q Consensus 161 GfdTA~~~~~~~i~~l~~~a~S~~rv~ivE 190 (197)
++|-. .....+.+.|.. ..|+++.++-
T Consensus 103 ~~D~~-~~g~~a~~~L~~--~G~~~i~~i~ 129 (277)
T 3e61_A 103 STNHF-KGGQLQAEVVRK--GKGKNVLIVH 129 (277)
T ss_dssp ---HH-HHHHHHHHHHHH--TTCCSEEEEE
T ss_pred EechH-HHHHHHHHHHHH--CCCCeEEEEe
Confidence 77632 223333333433 2577887663
No 25
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=90.09 E-value=5.8 Score=33.07 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
+...+..+.|...++|++|+.+.+.+-
T Consensus 113 ~~~~~~~~~l~~~~vdGiI~~~~~~~~ 139 (355)
T 3e3m_A 113 EREEQLVETMLRRRPEAMVLSYDGHTE 139 (355)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSCCCH
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCH
Confidence 445577888889999999999877654
No 26
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=89.66 E-value=7.1 Score=31.59 Aligned_cols=66 Identities=23% Similarity=0.303 Sum_probs=48.1
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++.+.+...|+++.-+. +.. +.+.
T Consensus 5 Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----------------------------------~~~----~~~~ 46 (313)
T 3m9w_A 5 IGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQS----------------------------------ANG----NEET 46 (313)
T ss_dssp EEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEE----------------------------------CTT----CHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEC----------------------------------CCC----CHHH
Confidence 68888777778888888888888888887664320 000 2344
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..+..+.+...++|++|+.+-+.+
T Consensus 47 ~~~~i~~l~~~~vdgiIi~~~~~~ 70 (313)
T 3m9w_A 47 QMSQIENMINRGVDVLVIIPYNGQ 70 (313)
T ss_dssp HHHHHHHHHHTTCSEEEEECSSTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCChh
Confidence 556778888899999999987765
No 27
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=89.50 E-value=4.8 Score=32.48 Aligned_cols=26 Identities=8% Similarity=-0.019 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
...++.+.|...++|++|+.+.+.+-
T Consensus 56 ~~~~~~~~l~~~~vdGiI~~~~~~~~ 81 (295)
T 3hcw_A 56 LMDEVYKMIKQRMVDAFILLYSKEND 81 (295)
T ss_dssp HHHHHHHHHHTTCCSEEEESCCCTTC
T ss_pred HHHHHHHHHHhCCcCEEEEcCcccCh
Confidence 34567888899999999999876543
No 28
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=89.28 E-value=6.7 Score=30.76 Aligned_cols=65 Identities=6% Similarity=-0.031 Sum_probs=48.1
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|=...++.++.+.+...|+++.-+. +.. +.+.
T Consensus 5 Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----------------------------------~~~----~~~~ 46 (272)
T 3o74_A 5 LGFILPDLENPSYARIAKQLEQGARARGYQLLIAS----------------------------------SDD----QPDS 46 (272)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE----------------------------------CTT----CHHH
T ss_pred EEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEe----------------------------------CCC----CHHH
Confidence 78888888888888899999888888888775331 000 1234
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~g 104 (197)
..+..+.+...++|++|+.+.+.
T Consensus 47 ~~~~~~~l~~~~vdgiIi~~~~~ 69 (272)
T 3o74_A 47 ERQLQQLFRARRCDALFVASCLP 69 (272)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHHHHHcCCCEEEEecCcc
Confidence 45677888889999999988763
No 29
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=88.91 E-value=7.1 Score=30.60 Aligned_cols=67 Identities=10% Similarity=0.078 Sum_probs=47.6
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++.+.+...|+++.-+. . ... .+.+.
T Consensus 3 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--------~--------------------------~~~--~~~~~ 46 (276)
T 3ksm_A 3 LLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRS--------T--------------------------KDD--GDIAG 46 (276)
T ss_dssp EEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECC--------C--------------------------SST--TCHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEC--------C--------------------------CCC--CCHHH
Confidence 68888888888888999999999888887664220 0 000 12344
Q ss_pred HHHHHHHHHHhC-CcEEEEecCCC
Q psy5987 82 RLKAAKNLIDRG-ITNLVVIGGDG 104 (197)
Q Consensus 82 ~~~~~~~l~~~~-I~~LiviGG~g 104 (197)
..+..+.|.+.+ +|++|+.+-+.
T Consensus 47 ~~~~i~~l~~~~~vdgii~~~~~~ 70 (276)
T 3ksm_A 47 QIQILSYHLSQAPPDALILAPNSA 70 (276)
T ss_dssp HHHHHHHHHHHSCCSEEEECCSST
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCH
Confidence 556778888888 99999998653
No 30
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=88.53 E-value=9.2 Score=31.41 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
+...+..+.|...++|++|+.+.+.+.
T Consensus 106 ~~~~~~~~~l~~~~vdgiIi~~~~~~~ 132 (338)
T 3dbi_A 106 EEERQAIQYLLDLRCDAIMIYPRFLSV 132 (338)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSCH
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCh
Confidence 444567788899999999999877654
No 31
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=88.20 E-value=8.5 Score=30.58 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=44.4
Q ss_pred eEEEeCC-----CChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCc
Q psy5987 2 TAQVNKK-----SSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDF 76 (197)
Q Consensus 2 ~aIl~sG-----G~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~ 76 (197)
||++... -..|-...++.++.+.+...|+++.-+ .+..
T Consensus 11 Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~----------------------------------~~~~--- 53 (292)
T 3k4h_A 11 LGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS----------------------------------TGET--- 53 (292)
T ss_dssp EEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC----------------------------------CCCS---
T ss_pred EEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE----------------------------------eCCC---
Confidence 5667666 566677777777777777777665421 0000
Q ss_pred cChhHHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 77 REKAGRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 77 ~~~~~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
+++...++.+.+...++|++|+.+.+.+-
T Consensus 54 -~~~~~~~~~~~~~~~~vdgiIi~~~~~~~ 82 (292)
T 3k4h_A 54 -EEEIFNGVVKMVQGRQIGGIILLYSREND 82 (292)
T ss_dssp -HHHHHHHHHHHHHTTCCCEEEESCCBTTC
T ss_pred -CHHHHHHHHHHHHcCCCCEEEEeCCCCCh
Confidence 12334567888888999999999877553
No 32
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=88.16 E-value=0.21 Score=42.50 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=16.3
Q ss_pred HhCCcEEEEecCCCcHHHHHHH
Q psy5987 91 DRGITNLVVIGGDGSLTGANLF 112 (197)
Q Consensus 91 ~~~I~~LiviGG~gs~~~a~~l 112 (197)
..+.|.+|++|||||+..|...
T Consensus 73 ~~~~d~vi~~GGDGT~l~a~~~ 94 (307)
T 1u0t_A 73 ADGCELVLVLGGDGTFLRAAEL 94 (307)
T ss_dssp ---CCCEEEEECHHHHHHHHHH
T ss_pred ccCCCEEEEEeCCHHHHHHHHH
Confidence 3478999999999999876543
No 33
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=88.16 E-value=0.89 Score=39.34 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccC
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDND 152 (197)
.+..+++.+.+++++.|.+|-+||--.+..|..++.. .++++|.||-|--.|
T Consensus 72 ~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~----------------------~~~p~i~IPTTa~tg 123 (370)
T 1jq5_A 72 RNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVADE----------------------LDAYIVIVPTAASTD 123 (370)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH----------------------HTCEEEEEESSCCSS
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHh----------------------cCCCEEEeccccCCC
Confidence 4678899999999999999999998888887766521 278999999984433
No 34
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=86.75 E-value=10 Score=30.08 Aligned_cols=27 Identities=4% Similarity=0.009 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
++...+.++.+...++|++|+.+-+..
T Consensus 55 ~~~~~~~i~~l~~~~vdgiii~~~~~~ 81 (304)
T 3gbv_A 55 YNSFVATSQAVIEEQPDGVMFAPTVPQ 81 (304)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCSSGG
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCChH
Confidence 445567788899999999999987653
No 35
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=86.41 E-value=11 Score=30.06 Aligned_cols=24 Identities=4% Similarity=-0.083 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 83 LKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 83 ~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
..+.+.+...++|++|+.+-+.+-
T Consensus 56 ~~~~~~l~~~~vdgiIi~~~~~~~ 79 (288)
T 3gv0_A 56 VPIRYILETGSADGVIISKIEPND 79 (288)
T ss_dssp HHHHHHHHHTCCSEEEEESCCTTC
T ss_pred HHHHHHHHcCCccEEEEecCCCCc
Confidence 455666778999999999866443
No 36
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=86.15 E-value=6 Score=32.72 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
+...+..+.|...++|++|+.+-+.+-
T Consensus 111 ~~~~~~i~~l~~~~vdGiIi~~~~~~~ 137 (344)
T 3kjx_A 111 EKEEKVLYEMLSWRPSGVIIAGLEHSE 137 (344)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSCCCH
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCH
Confidence 445667788888999999999876554
No 37
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=85.81 E-value=12 Score=29.97 Aligned_cols=66 Identities=9% Similarity=-0.072 Sum_probs=42.7
Q ss_pred eEEEeC----CCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCcc
Q psy5987 2 TAQVNK----KSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFR 77 (197)
Q Consensus 2 ~aIl~s----GG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~ 77 (197)
||++.. .-..|=...++.++-+.+...|++++-+.. ..
T Consensus 9 Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~----------------------------------~~---- 50 (294)
T 3qk7_A 9 IALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPD----------------------------------EP---- 50 (294)
T ss_dssp EEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEE----------------------------------CT----
T ss_pred EEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeC----------------------------------CC----
Confidence 566665 344566677778888877777876653310 00
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
.+...++.+.+...++|++|+.+.+.+.
T Consensus 51 -~~~~~~~~~~l~~~~vdGiIi~~~~~~~ 78 (294)
T 3qk7_A 51 -GEKYQSLIHLVETRRVDALIVAHTQPED 78 (294)
T ss_dssp -TCCCHHHHHHHHHTCCSEEEECSCCSSC
T ss_pred -hhhHHHHHHHHHcCCCCEEEEeCCCCCh
Confidence 0112356677888999999999887654
No 38
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=85.67 E-value=0.31 Score=40.41 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=16.3
Q ss_pred hCCcEEEEecCCCcHHHHH
Q psy5987 92 RGITNLVVIGGDGSLTGAN 110 (197)
Q Consensus 92 ~~I~~LiviGG~gs~~~a~ 110 (197)
.+.|.+|++|||||+..+.
T Consensus 40 ~~~D~vv~~GGDGTll~~a 58 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAA 58 (258)
T ss_dssp BCCSEEEEEECHHHHHHHH
T ss_pred CCCCEEEEEeCcHHHHHHH
Confidence 3789999999999997764
No 39
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=85.52 E-value=1.2 Score=39.12 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=43.8
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDF 153 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi 153 (197)
+.+..+++++.+++.+.|.+|-+||--++..|..++-. .++++|.||-|--.|-
T Consensus 91 ~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~----------------------~~~p~i~IPTTagtgS 144 (387)
T 3uhj_A 91 CTSEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAID----------------------TGARIVIAPTIASTDA 144 (387)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH----------------------TTCEEEECCSSCCCST
T ss_pred CHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHh----------------------cCCCEEEecCcccCCc
Confidence 45778999999999999999999998888888776521 3789999998854443
No 40
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=85.25 E-value=4.2 Score=32.77 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=63.9
Q ss_pred CeEEEeCCC---ChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCC-------CCeEECChhhhhhhhhhcCceecc
Q psy5987 1 MTAQVNKKS---SSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGG-------DNIVEANWSSVSSIIHKGGTVIGS 70 (197)
Q Consensus 1 ~~aIl~sGG---~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~-------~~~~~l~~~~v~~~~~~gGs~Lgs 70 (197)
|-.++.+|| |..=.. ......++|+=.|..-|++.. .++-.++++....+...+ .++
T Consensus 1 Mki~i~~gg~~~p~~~~~----------~~~~~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~-~i~-- 67 (212)
T 3l8m_A 1 MKANLLCGNRNLPKHILV----------EHKHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI-EIN-- 67 (212)
T ss_dssp CEEEEECCSSSCCTTHHH----------HTTTSEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT-BCC--
T ss_pred CEEEEEeCCCCCchhhhh----------cccCCEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC-cEE--
Confidence 666788888 331111 234557888888888777642 245556666666666665 443
Q ss_pred cCCCCccChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHH
Q psy5987 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQ 114 (197)
Q Consensus 71 sR~~~~~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~ 114 (197)
+.++.++.-+.+++++.+.+++.+-++++|+.|. +-=|.|+.
T Consensus 68 -~~p~eKD~TD~e~Al~~a~~~~~~~I~i~Ga~Gg-R~DH~lan 109 (212)
T 3l8m_A 68 -PYNSEKDDTDLALGIDQAVKRGYRNIDVYGATGG-RLDHFMGA 109 (212)
T ss_dssp -CCC---CBCHHHHHHHHHHHTTCCEEEEESCSSS-CHHHHHHH
T ss_pred -EECCcCCCCHHHHHHHHHHHCCCCEEEEEcCCCC-chhHHHHH
Confidence 3333344567899999988999999999999997 33344443
No 41
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=85.20 E-value=0.14 Score=45.44 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=36.7
Q ss_pred hCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCc-eEEEeeeecccCCCCCCCCCCchhHHH--H
Q psy5987 92 RGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHL-HIAGLVGSIDNDFCGTDMTIGTDSALH--R 168 (197)
Q Consensus 92 ~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i-~vvgiPkTIDNDi~g~d~s~GfdTA~~--~ 168 (197)
.+.|.+|++|||||+..|..... ..++ +|+||+. | ++||.|.++ .
T Consensus 113 ~~~DlVIvlGGDGTlL~aa~~~~----------------------~~~vpPiLGIN~-------G---~lGFLt~~~~~~ 160 (388)
T 3afo_A 113 NRTDLLVTLGGDGTILHGVSMFG----------------------NTQVPPVLAFAL-------G---TLGFLSPFDFKE 160 (388)
T ss_dssp HHCSEEEEEESHHHHHHHHHTTT----------------------TSCCCCEEEEEC-------S---SCCSSCCEEGGG
T ss_pred cCCCEEEEEeCcHHHHHHHHHhc----------------------ccCCCeEEEEEC-------C---CcccCCcCChHH
Confidence 36899999999999988753311 1356 7999962 2 678777543 4
Q ss_pred HHHHHHHHHHh
Q psy5987 169 IIEAIDAIVST 179 (197)
Q Consensus 169 ~~~~i~~l~~~ 179 (197)
+.++++++...
T Consensus 161 ~~~al~~il~g 171 (388)
T 3afo_A 161 HKKVFQEVISS 171 (388)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 45555555443
No 42
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=84.99 E-value=14 Score=29.80 Aligned_cols=27 Identities=0% Similarity=-0.048 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
+...++.+.+...++|++|+.+.+.+-
T Consensus 70 ~~~~~~~~~l~~~~vdgiIi~~~~~~~ 96 (305)
T 3huu_A 70 DLYHEVKTMIQSKSVDGFILLYSLKDD 96 (305)
T ss_dssp HHHHHHHHHHHTTCCSEEEESSCBTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCcCCc
Confidence 345677888999999999999876543
No 43
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=84.80 E-value=14 Score=29.86 Aligned_cols=65 Identities=20% Similarity=0.166 Sum_probs=47.3
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|=...++.++-+.+...|+++.-+. +.. +.+.
T Consensus 6 Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----------------------------------~~~----~~~~ 47 (330)
T 3uug_A 6 VGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY----------------------------------ADD----DIPN 47 (330)
T ss_dssp EEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE----------------------------------CTT----CHHH
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee----------------------------------CCC----CHHH
Confidence 78888877778888888888888888887765331 000 2234
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~g 104 (197)
..+.++.+...++|++|+.+-+.
T Consensus 48 ~~~~i~~~~~~~vdgiIi~~~~~ 70 (330)
T 3uug_A 48 QLSQIENMVTKGVKVLVIASIDG 70 (330)
T ss_dssp HHHHHHHHHHHTCSEEEECCSSG
T ss_pred HHHHHHHHHHcCCCEEEEEcCCc
Confidence 45677788888999999988774
No 44
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=84.59 E-value=14 Score=29.70 Aligned_cols=27 Identities=4% Similarity=0.089 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
+...+..+.|...++|++|+.+.+.+.
T Consensus 58 ~~~~~~~~~l~~~~vdgiI~~~~~~~~ 84 (303)
T 3kke_A 58 RGTQQLSRLVSEGRVDGVLLQRREDFD 84 (303)
T ss_dssp HHHHHHHHHHHSCSSSEEEECCCTTCC
T ss_pred HHHHHHHHHHHhCCCcEEEEecCCCCc
Confidence 445677888999999999999887664
No 45
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=84.47 E-value=11 Score=30.12 Aligned_cols=68 Identities=9% Similarity=0.021 Sum_probs=47.3
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++.+.+...|+++.-+. +.. ..+.+.
T Consensus 8 Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~----------------------------------~~~--~~~~~~ 51 (304)
T 3o1i_D 8 ICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLE----------------------------------AGG--YPNKSR 51 (304)
T ss_dssp EEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEE----------------------------------CSS--TTCHHH
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEc----------------------------------CCC--CCCHHH
Confidence 67787777778888888888888888887664321 000 002344
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..+..+.+...++|++|+.+-+..
T Consensus 52 ~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 52 QEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp HHHHHHHHHHHTCSEEEECCSSTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCChh
Confidence 566778888899999999977654
No 46
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=83.83 E-value=1.4 Score=38.44 Aligned_cols=52 Identities=19% Similarity=0.175 Sum_probs=43.3
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDND 152 (197)
+.+..+++++.+++.+.|.+|-+||--++..|..++-. .++++|.||-|- .+
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~----------------------~~~P~i~IPTTa-tg 124 (364)
T 3iv7_A 73 PIEVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT----------------------TALPIVAIPTTY-AG 124 (364)
T ss_dssp BHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH----------------------HCCCEEEEECSS-SC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc----------------------cCCCEEEEcCCc-cc
Confidence 46778999999999999999999998888888776521 268999999997 54
No 47
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=83.82 E-value=16 Score=29.77 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=42.5
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++.+.+...|+++.-+ .+.. +.+.
T Consensus 8 Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~----------------------------------~~~~----~~~~ 49 (332)
T 2rjo_A 8 LACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPL----------------------------------TTEG----SSEK 49 (332)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEE----------------------------------ECTT----CHHH
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEe----------------------------------cCCC----CHHH
Confidence 6777776666777778888888877777654321 0000 1233
Q ss_pred HHHHHHHHHHhC--CcEEEEecCCC
Q psy5987 82 RLKAAKNLIDRG--ITNLVVIGGDG 104 (197)
Q Consensus 82 ~~~~~~~l~~~~--I~~LiviGG~g 104 (197)
..+..+.+...+ +|++|+.+.+.
T Consensus 50 ~~~~i~~l~~~~~~vdgiIi~~~~~ 74 (332)
T 2rjo_A 50 GIADIRALLQKTGGNLVLNVDPNDS 74 (332)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCSSH
T ss_pred HHHHHHHHHHCCCCCCEEEEeCCCH
Confidence 445667777788 99999987654
No 48
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=83.42 E-value=16 Score=29.24 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
..+..+.|...++|++|+.+.+.+.
T Consensus 55 ~~~~~~~l~~~~vdgiIi~~~~~~~ 79 (289)
T 3k9c_A 55 EKVAVQALMRERCEAAILLGTRFDT 79 (289)
T ss_dssp HHHHHHHHTTTTEEEEEEETCCCCH
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCH
Confidence 3456677788899999999987654
No 49
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=83.28 E-value=18 Score=29.73 Aligned_cols=28 Identities=7% Similarity=0.143 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
++...+..+.|...++|++|+.+-+.+-
T Consensus 104 ~~~~~~~~~~l~~~~vdGiIi~~~~~~~ 131 (339)
T 3h5o_A 104 AGQELQLLRAYLQHRPDGVLITGLSHAE 131 (339)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECSCCCT
T ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCH
Confidence 3445677888889999999999866544
No 50
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=83.26 E-value=12 Score=29.86 Aligned_cols=32 Identities=9% Similarity=-0.015 Sum_probs=22.0
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEE
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVF 33 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~ 33 (197)
||++...-..|-...++.++.+.+...|+++.
T Consensus 11 Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~ 42 (290)
T 3clk_A 11 IAAVVSSVRTNFAQQILDGIQEEAHKNGYNLI 42 (290)
T ss_dssp EEEECCCCSSSHHHHHHHHHHHHHHTTTCEEE
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHHHcCCeEE
Confidence 56776666666677777777777777676554
No 51
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=83.14 E-value=19 Score=29.89 Aligned_cols=26 Identities=8% Similarity=0.220 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
+...+..+.|...++|++|+.+.+.+
T Consensus 109 ~~~~~~~~~l~~~~vdgiI~~~~~~~ 134 (348)
T 3bil_A 109 TTMSGSLEFLTSHGVDGIICVPNEEC 134 (348)
T ss_dssp HHHHHHHHHHHHTTCSCEEECCCGGG
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 44556778888899999999887654
No 52
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=82.17 E-value=2.9 Score=36.26 Aligned_cols=69 Identities=9% Similarity=0.046 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcC--CCcHHHH---hhcCCceEEEeeeecccC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDG--SITKDQR---EKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~--~~~~~~~---~~~~~i~vvgiPkTIDND 152 (197)
+.+...++++.+++++.|.+|-+||--.+..|..++-.+ . ..+ ++..+.. ....++++|.||-|.-.|
T Consensus 73 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~----~---~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtg 145 (386)
T 1rrm_A 73 TITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIIS----N---NPEFADVRSLEGLSPTNKPSVPILAIPTTAGTA 145 (386)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHH----H---CGGGTTSGGGSEECCCCSCCSCEEEEECSSSCC
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHH----h---CCCCCCHHHHhcccccCCCCCCEEEEeCCCCch
Confidence 567899999999999999999999988888887776321 0 000 0000000 002378999999887544
Q ss_pred C
Q psy5987 153 F 153 (197)
Q Consensus 153 i 153 (197)
-
T Consensus 146 S 146 (386)
T 1rrm_A 146 A 146 (386)
T ss_dssp T
T ss_pred h
Confidence 3
No 53
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=82.11 E-value=1.8 Score=37.65 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=41.7
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
+.+..+++++.+++.+.|.+|-+||--++..|..++-. .++++|.||-|-
T Consensus 74 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~----------------------~~~p~i~IPTT~ 123 (358)
T 3jzd_A 74 PIESARDATARAREAGADCAVAVGGGSTTGLGKAIALE----------------------TGMPIVAIPTTY 123 (358)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH----------------------HCCCEEEEECSS
T ss_pred CHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc----------------------cCCCEEEEeCCc
Confidence 45678899999999999999999998888888766521 268999999985
No 54
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=81.79 E-value=2 Score=37.23 Aligned_cols=52 Identities=10% Similarity=0.025 Sum_probs=43.0
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDND 152 (197)
+.+..+++++.+++.+.|.+|-+||--++..|..++-. .++++|.||-|. .|
T Consensus 72 ~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~----------------------~~~p~i~IPTTa-tg 123 (353)
T 3hl0_A 72 PVEVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR----------------------TDAAQIVIPTTY-AG 123 (353)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH----------------------HCCEEEEEECSS-CC
T ss_pred cHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc----------------------cCCCEEEEeCCc-hh
Confidence 45678999999999999999999998888888766521 278999999997 54
No 55
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=81.03 E-value=5.7 Score=31.69 Aligned_cols=62 Identities=6% Similarity=0.020 Sum_probs=41.8
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCE-EEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCK-VFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~-v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
||++...-..|-...++.++.+.+...|++ ++-+ .+.. +.+
T Consensus 13 Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----------------------------------~~~~----~~~ 54 (277)
T 3hs3_A 13 IGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISF----------------------------------STNS----DVK 54 (277)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE----------------------------------CSSC----CHH
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEE----------------------------------eCCC----ChH
Confidence 567776666677777777777777777776 4321 0111 223
Q ss_pred HHHHHHHHHHHhCCcEEEEec
Q psy5987 81 GRLKAAKNLIDRGITNLVVIG 101 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviG 101 (197)
...+..+.+...++|++|+.+
T Consensus 55 ~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 55 KYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp HHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHhCCCCEEEEcc
Confidence 445677888999999999998
No 56
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=80.83 E-value=2.2 Score=37.31 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=46.7
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHH---HhhcCCceEEEeeeecccCC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQ---REKYCHLHIAGLVGSIDNDF 153 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~---~~~~~~i~vvgiPkTIDNDi 153 (197)
+.+..+++++.+++.+.|.+|-+||--++..|..++-.+ -..+++..+. +....++++|.||-|.-.|-
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~-------~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgS 144 (383)
T 3ox4_A 73 TVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVA-------TNGGEVKDYEGIDKSKKPALPLMSINTTAGTAS 144 (383)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHH-------HSCSSGGGGCEESCCSSCCSCEEEEECSSSCCT
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHH-------hCCCCHHHHhcccccccCCCCEEEEeCCCCchh
Confidence 567899999999999999999999988888887776321 0011111110 00123789999999875443
No 57
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=80.82 E-value=19 Score=28.41 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
+...+..+.|...++|++|+.+.+.+
T Consensus 58 ~~~~~~~~~l~~~~vdgiIi~~~~~~ 83 (298)
T 3tb6_A 58 DNERRGLENLLSQHIDGLIVEPTKSA 83 (298)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCSSTT
T ss_pred HHHHHHHHHHHHCCCCEEEEeccccc
Confidence 44567788888999999999987653
No 58
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=80.56 E-value=1.9 Score=36.63 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFC 154 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~ 154 (197)
..++++.+...+.|.+|++|||||+..+..- |+ +...++++..||.==-||+.
T Consensus 69 a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~----------l~----------~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 69 ATLEAERAMHENYDVLIAAGGDGTLNEVVNG----------IA----------EKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp HHHHHHHHTTTTCSEEEEEECHHHHHHHHHH----------HT----------TCSSCCEEEEEECSSCCHHH
T ss_pred HHHHHHHHhhcCCCEEEEEcCchHHHHHHHH----------HH----------hCCCCCcEEEecCCcHhHHH
Confidence 3444555555688999999999999875422 11 12347889999976667775
No 59
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=80.44 E-value=2.6 Score=35.83 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFC 154 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~ 154 (197)
..++++.+...+.|.+|++|||||+..+..- |.+ +....++++..||.==-||+.
T Consensus 71 ~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~----------l~~--------~~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 71 AARYVEEARKFGVATVIAGGGDGTINEVSTA----------LIQ--------CEGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHHHHHHHHHHTCSEEEEEESHHHHHHHHHH----------HHH--------CCSSCCCEEEEEECSSSCHHH
T ss_pred HHHHHHHHHhcCCCEEEEEccchHHHHHHHH----------Hhh--------cccCCCCeEEEecCcCHHHHH
Confidence 3444555555689999999999999875322 110 001346788889975567665
No 60
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=79.92 E-value=1.7 Score=35.58 Aligned_cols=105 Identities=10% Similarity=0.055 Sum_probs=64.1
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCC-------CCeEECChhhhhhhhhhcCceecccCC
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGG-------DNIVEANWSSVSSIIHKGGTVIGSARC 73 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~-------~~~~~l~~~~v~~~~~~gGs~LgssR~ 73 (197)
|-.++.+|||..-.-. .+...+....++++=.|..-|++.. .++-.++++....+...|-.++ ++
T Consensus 1 Mkv~Iv~gG~~~~~~~-----l~~~~~~~~~~i~~Dgga~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~~~i~---~~ 72 (223)
T 3k94_A 1 MIIHIVGGGPRELLPD-----LRFYDGEDVCWVGVDRGTMTLLEAGFRPVRAFGDFDSLPAEDVVKLQQAFPDLD---VW 72 (223)
T ss_dssp CEEEEECSSCGGGSCC-----GGGGCCTTEEEEEETTHHHHHHHHTCCCSEEESCGGGSCHHHHHHHHHHCTTCC---EE
T ss_pred CEEEEEeCCChHHhHH-----HHHhhhcCCEEEEECHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCCeEE---EC
Confidence 7788999997542211 1111122236778888887776541 1333455555555655543333 22
Q ss_pred CCccChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHH
Q psy5987 74 SDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQ 114 (197)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~ 114 (197)
++.++.-+.+++++.+.+++.+-++++|+.|. +-=+.|+.
T Consensus 73 p~eKD~TD~e~Al~~a~~~g~~~I~i~Ga~GG-R~DH~lan 112 (223)
T 3k94_A 73 PAEKDKTDMEIALDWAVEQTARCIRLFGATGG-RLDHLFGN 112 (223)
T ss_dssp CCBTTBCHHHHHHHHHHTTCCSEEEEESCSSS-SHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHcCCCEEEEEcCCCC-chhHHHHH
Confidence 33334567899999999999999999999997 33344443
No 61
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=79.87 E-value=2 Score=37.25 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=44.4
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHh-cCCCcHHHH--hhcCCceEEEeeee
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLK-DGSITKDQR--EKYCHLHIAGLVGS 148 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~-~~~~~~~~~--~~~~~i~vvgiPkT 148 (197)
+.+..+++.+.+++.+.|.+|-+||--.+..|..++-.+ .. ++++..+.. +...++++|.||-|
T Consensus 83 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~-------~~~~~~~~~~~~~~~~~~~~p~i~IPTT 149 (371)
T 1o2d_A 83 SFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLL-------KEKDLSVEDLYDREKVKHWLPVVEIPTT 149 (371)
T ss_dssp BHHHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHT-------TSTTCCSGGGGCGGGCCCCCCEEEEECS
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHH-------hCCCCCHHHHhcccCCCCCCeEEEEeCC
Confidence 567889999999999999999999988888887776321 00 111111110 00147899999999
No 62
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=79.68 E-value=4.2 Score=35.58 Aligned_cols=70 Identities=14% Similarity=0.061 Sum_probs=46.2
Q ss_pred cChhHHHHHHHHHHHhC---CcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHH---HhhcCCceEEEeeeecc
Q psy5987 77 REKAGRLKAAKNLIDRG---ITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQ---REKYCHLHIAGLVGSID 150 (197)
Q Consensus 77 ~~~~~~~~~~~~l~~~~---I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~---~~~~~~i~vvgiPkTID 150 (197)
.+.+..+++++.+++.+ .|.+|-+||--++..|..++-.. -.++++..+. .-....+++|.||-|--
T Consensus 90 pt~~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~-------~~~~~~~~~~~~~~~~~~~~P~i~IPTTag 162 (375)
T 3rf7_A 90 PTTVQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLML-------TNPGSSSEYQGWDLIKNPAVHHIGIPTVSG 162 (375)
T ss_dssp CBHHHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHT-------SSCSCGGGGCEESCCCSCCCCEEEEESSCS
T ss_pred CCHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHH-------hCCCCHHHhhccccccCCCCCEEEEcCCCc
Confidence 35678899999999998 99999999998888888776311 0001111000 00123689999998864
Q ss_pred cCC
Q psy5987 151 NDF 153 (197)
Q Consensus 151 NDi 153 (197)
.|-
T Consensus 163 tgS 165 (375)
T 3rf7_A 163 TGA 165 (375)
T ss_dssp SCT
T ss_pred cch
Confidence 433
No 63
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=79.37 E-value=23 Score=28.45 Aligned_cols=66 Identities=11% Similarity=0.110 Sum_probs=44.8
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++-+.+...|++++-+. +.. +.+.
T Consensus 5 Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~----------------------------------~~~----~~~~ 46 (306)
T 2vk2_A 5 VGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD----------------------------------GQQ----KQEN 46 (306)
T ss_dssp EEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEE----------------------------------CTT----CHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeC----------------------------------CCC----CHHH
Confidence 67777776677777788888888878787654220 000 1233
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..+..+.|...++|++|+.+.+.+
T Consensus 47 ~~~~i~~l~~~~vdgiIi~~~~~~ 70 (306)
T 2vk2_A 47 QIKAVRSFVAQGVDAIFIAPVVAT 70 (306)
T ss_dssp HHHHHHHHHHHTCSEEEECCSSSS
T ss_pred HHHHHHHHHHcCCCEEEEeCCChh
Confidence 445677788889999999887653
No 64
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=79.00 E-value=1.6 Score=38.71 Aligned_cols=53 Identities=6% Similarity=0.036 Sum_probs=41.7
Q ss_pred cChhHHHHHHHHHHHhCC---cEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 77 REKAGRLKAAKNLIDRGI---TNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 77 ~~~~~~~~~~~~l~~~~I---~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
++.+..+++.+.+.++++ |.+|-+||--.+..|..++-.| ..++++|.||-|.
T Consensus 104 kt~~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~--------------------~rgip~I~IPTTl 159 (390)
T 3okf_A 104 KTLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACY--------------------QRGVDFIQIPTTL 159 (390)
T ss_dssp CBHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB--------------------TTCCEEEEEECSH
T ss_pred chHHHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHHh--------------------cCCCCEEEeCCCC
Confidence 356788999999999999 6999999987777776554211 2379999999995
No 65
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=78.81 E-value=23 Score=28.17 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
+...+..+.+...++|++|+.+.+.+
T Consensus 63 ~~~~~~~~~l~~~~vdgii~~~~~~~ 88 (293)
T 2iks_A 63 DNEMRCIEHLLQRQVDAIIVSTSLPP 88 (293)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSCT
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 44456778888899999999987643
No 66
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=78.81 E-value=22 Score=28.04 Aligned_cols=67 Identities=3% Similarity=-0.028 Sum_probs=47.4
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|=...++.++.+.+...|+++.-+. +. .+.+.
T Consensus 11 Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----------------------------------~~----~~~~~ 52 (293)
T 3l6u_A 11 VGFTIVNDKHEFAQRLINAFKAEAKANKYEALVAT----------------------------------SQ----NSRIS 52 (293)
T ss_dssp EEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE----------------------------------CS----SCHHH
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEEC----------------------------------CC----CCHHH
Confidence 67777777777788888888888877777665321 00 02344
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
..+..+.|...++|++|+.+.+...
T Consensus 53 ~~~~~~~l~~~~vdgiI~~~~~~~~ 77 (293)
T 3l6u_A 53 EREQILEFVHLKVDAIFITTLDDVY 77 (293)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCTTT
T ss_pred HHHHHHHHHHcCCCEEEEecCChHH
Confidence 5567788888999999999877654
No 67
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=78.57 E-value=1.2 Score=39.21 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=38.3
Q ss_pred hCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCCCCCCchhHH--HHH
Q psy5987 92 RGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSAL--HRI 169 (197)
Q Consensus 92 ~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d~s~GfdTA~--~~~ 169 (197)
.+.|.+|++|||||+-.|..+.+ ...++|+||=. | ++||.|-. +.+
T Consensus 107 ~~~DlvI~lGGDGT~L~aa~~~~----------------------~~~~PvlGiN~-------G---~LGFLt~~~~~~~ 154 (365)
T 3pfn_A 107 NQIDFIICLGGDGTLLYASSLFQ----------------------GSVPPVMAFHL-------G---SLGFLTPFSFENF 154 (365)
T ss_dssp TTCSEEEEESSTTHHHHHHHHCS----------------------SSCCCEEEEES-------S---SCTTTCCEESTTH
T ss_pred cCCCEEEEEcChHHHHHHHHHhc----------------------cCCCCEEEEcC-------C---CCccceeecHHHH
Confidence 47899999999999987765421 23678888832 2 78887753 345
Q ss_pred HHHHHHHHHh
Q psy5987 170 IEAIDAIVST 179 (197)
Q Consensus 170 ~~~i~~l~~~ 179 (197)
.+.++++...
T Consensus 155 ~~~l~~vl~g 164 (365)
T 3pfn_A 155 QSQVTQVIEG 164 (365)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHcC
Confidence 5666666543
No 68
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=78.43 E-value=2.8 Score=36.75 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=45.7
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcC--CCcHHHHh----hcCCceEEEeeeeccc
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDG--SITKDQRE----KYCHLHIAGLVGSIDN 151 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~--~~~~~~~~----~~~~i~vvgiPkTIDN 151 (197)
+.+...++++.+++.+.|.+|-+||--.+..|..++-.+. ..+ ++..+... ...++++|.||-|.-.
T Consensus 91 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~-------~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagt 163 (408)
T 1oj7_A 91 AYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAAN-------YPENIDPWHILQTGGKEIKSAIPMGCVLTLPAT 163 (408)
T ss_dssp BHHHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTT-------SCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHh-------CCCCCCHHHHhccccCcCCCCCCEEEEeCCCch
Confidence 4577899999999999999999999888888887764210 001 11111111 1246899999988633
No 69
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=78.22 E-value=23 Score=27.86 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=69.4
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++-+.+..+|++++-. ++.. +.+.
T Consensus 4 Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~----------------------------------~~~~----~~~~ 45 (271)
T 2dri_A 4 IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL----------------------------------DSQN----NPAK 45 (271)
T ss_dssp EEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEE----------------------------------ECTT----CHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEe----------------------------------CCCC----CHHH
Confidence 6777776667777888888888888878766432 0000 1122
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCCC--CC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTD--MT 159 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~d--~s 159 (197)
..+..+.+...++|++|+.+.+..... ..+. .+++ .+++||. +|++.+..+ .+
T Consensus 46 ~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~~------------------~~~~--~~iPvV~----i~~~~~~~~~~~~ 100 (271)
T 2dri_A 46 ELANVQDLTVRGTKILLINPTDSDAVG-NAVK------------------MANQ--ANIPVIT----LDRQATKGEVVSH 100 (271)
T ss_dssp HHHHHHHHTTTTEEEEEECCSSTTTTH-HHHH------------------HHHH--TTCCEEE----ESSCCSSSCCSEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCChHHHH-HHHH------------------HHHH--CCCcEEE----ecCCCCCCceeEE
Confidence 345567777889999999875533111 1111 1112 3677764 455554422 35
Q ss_pred CCchhHHHHHHHHHHHHHHhhccCCcEEEEE
Q psy5987 160 IGTDSALHRIIEAIDAIVSTAYSHQRTFIME 190 (197)
Q Consensus 160 ~GfdTA~~~~~~~i~~l~~~a~S~~rv~ivE 190 (197)
++.|- ..-..++.+.|......|+++.++.
T Consensus 101 V~~D~-~~~g~~a~~~L~~~g~g~~~I~~i~ 130 (271)
T 2dri_A 101 IASDN-VLGGKIAGDYIAKKAGEGAKVIELQ 130 (271)
T ss_dssp EEECH-HHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EecCh-HHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 66663 2223334444444333466776664
No 70
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=78.19 E-value=22 Score=27.73 Aligned_cols=66 Identities=9% Similarity=0.044 Sum_probs=43.8
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++-+.+..+|++++-+ .+.. +++.
T Consensus 6 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~----------------------------------~~~~----~~~~ 47 (275)
T 3d8u_A 6 IALIIPSLFEKACAHFLPSFQQALNKAGYQLLLG----------------------------------YSDY----SIEQ 47 (275)
T ss_dssp EEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCE----------------------------------ECTT----CHHH
T ss_pred EEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEE----------------------------------cCCC----CHHH
Confidence 6777776667777778888888877777655311 0010 1233
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..+..+.+...++|++|+.+.+.+
T Consensus 48 ~~~~~~~l~~~~vdgii~~~~~~~ 71 (275)
T 3d8u_A 48 EEKLLSTFLESRPAGVVLFGSEHS 71 (275)
T ss_dssp HHHHHHHHHTSCCCCEEEESSCCC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC
Confidence 455677788889999999987654
No 71
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=78.12 E-value=2 Score=37.34 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=40.2
Q ss_pred ChhHHHHHHHHHHHhCC---cEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 78 EKAGRLKAAKNLIDRGI---TNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I---~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
+.+...++.+.+.++++ |.+|-+||--.+..|..++-.| ..++++|.||-|.
T Consensus 76 ~~~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~--------------------~rgip~i~IPTTl 130 (368)
T 2gru_A 76 TLSTVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMM--------------------FRGIALIHVPTTF 130 (368)
T ss_dssp SHHHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHB--------------------TTCCEEEEEECSH
T ss_pred CHHHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHh--------------------cCCCCEEEECCch
Confidence 45678889999999985 9999999987777776554211 1379999999985
No 72
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=78.10 E-value=3.7 Score=35.59 Aligned_cols=69 Identities=7% Similarity=0.016 Sum_probs=46.2
Q ss_pred cChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHH---HhhcCCceEEEeeeecccC
Q psy5987 77 REKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQ---REKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 77 ~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~---~~~~~~i~vvgiPkTIDND 152 (197)
.+.+...++++.+++.+.|.+|-+||--.+..|..++-. + -..+++..+. +....++++|.||-|.-.|
T Consensus 76 p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~----~---~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtg 147 (387)
T 3bfj_A 76 PKDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIA----A---THEGDLYQYAGIETLTNPLPPIVAVNTTAGTA 147 (387)
T ss_dssp CBHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH----H---HSSSCSGGGCBSSCCCSCCCCEEEEECSTTCC
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHH----H---hCCCCHHHHhcccccCCCCCCEEEEeCCCCcc
Confidence 356788999999999999999999998888888777631 0 0011111111 0011478999999887443
No 73
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=78.07 E-value=23 Score=27.86 Aligned_cols=66 Identities=9% Similarity=0.089 Sum_probs=43.6
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++-+.+...|+++.-+ .+. .+++.
T Consensus 10 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~----------------------------------~~~----~~~~~ 51 (289)
T 1dbq_A 10 IGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILG----------------------------------NAW----NNLEK 51 (289)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEE----------------------------------ECT----TCHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE----------------------------------cCC----CChHH
Confidence 6777766666777777777777777767655321 000 02234
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..+..+.|...++|++|+.+.+.+
T Consensus 52 ~~~~~~~l~~~~vdgii~~~~~~~ 75 (289)
T 1dbq_A 52 QRAYLSMMAQKRVDGLLVMCSEYP 75 (289)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCCC
T ss_pred HHHHHHHHHhCCCCEEEEEeccCC
Confidence 456677888899999999987754
No 74
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=77.59 E-value=3.8 Score=35.15 Aligned_cols=52 Identities=6% Similarity=0.137 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHHHhCC---cEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 78 EKAGRLKAAKNLIDRGI---TNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I---~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
+.+..+++.+.++++++ |.+|-+||--.+..|..++-.| ..++++|.||-|.
T Consensus 67 ~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~--------------------~rgip~i~IPTTl 121 (343)
T 3clh_A 67 NFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIY--------------------FRGIDFINIPTTL 121 (343)
T ss_dssp SHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB--------------------TTCCEEEEEECSH
T ss_pred CHHHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHh--------------------ccCCCEEEeCCch
Confidence 56788999999999999 9999999987787776655211 1378999999984
No 75
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=76.50 E-value=26 Score=27.56 Aligned_cols=65 Identities=9% Similarity=0.023 Sum_probs=46.5
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++.+.+...|+++.-+. +.. +.+.
T Consensus 10 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~----------------------------------~~~----~~~~ 51 (276)
T 3jy6_A 10 IAVIVANIDDYFSTELFKGISSILESRGYIGVLFD----------------------------------ANA----DIER 51 (276)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEE----------------------------------CTT----CHHH
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEe----------------------------------CCC----CHHH
Confidence 67777777777788888888888877777665321 000 1234
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~g 104 (197)
..+..+.+...++|++|+.+-+.
T Consensus 52 ~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 52 EKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp HHHHHHHHHTTTCSEEEEESSCC
T ss_pred HHHHHHHHHhCCCCEEEEecCCc
Confidence 45678888899999999999886
No 76
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=76.50 E-value=26 Score=27.56 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
++...+..+.|...++|++|+.+.+.+
T Consensus 63 ~~~~~~~~~~l~~~~vdgii~~~~~~~ 89 (296)
T 3brq_A 63 AEEERQAIQYLLDLRCDAIMIYPRFLS 89 (296)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECSSSC
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 344556778888899999999987654
No 77
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=76.22 E-value=27 Score=27.74 Aligned_cols=66 Identities=11% Similarity=0.188 Sum_probs=41.4
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++.+.+...|+++.-+ .+.. +++.
T Consensus 19 Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~----------------------------------~~~~----~~~~ 60 (289)
T 2fep_A 19 VGVIIPDISSIFYSELARGIEDIATMYKYNIILS----------------------------------NSDQ----NMEK 60 (289)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE----------------------------------ECTT----CHHH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEE----------------------------------eCCC----CHHH
Confidence 5666665555666667777777766666654321 0010 1233
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..+..+.|...++|++|+.+.+.+
T Consensus 61 ~~~~~~~l~~~~vdgiIi~~~~~~ 84 (289)
T 2fep_A 61 ELHLLNTMLGKQVDGIVFMGGNIT 84 (289)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCC
T ss_pred HHHHHHHHHhCCCCEEEEecCCCC
Confidence 456677888899999999987644
No 78
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=76.20 E-value=3.7 Score=35.23 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=42.0
Q ss_pred ChhHHHHHHHHHHHhCC---cEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 78 EKAGRLKAAKNLIDRGI---TNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I---~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
+.+..+++.+.++++++ |.+|-+||--.+..|..++-.+ ..++++|.||-|.
T Consensus 72 ~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~--------------------~rgip~i~IPTT~ 126 (354)
T 1xah_A 72 TFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATL--------------------LRGVHFIQVPTTI 126 (354)
T ss_dssp SHHHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHB--------------------TTCCEEEEEECST
T ss_pred CHHHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHh--------------------ccCCCEEEECCcc
Confidence 56788999999999999 8999999988888777665211 2478999999985
No 79
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=75.42 E-value=29 Score=27.57 Aligned_cols=66 Identities=15% Similarity=0.022 Sum_probs=41.4
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|=...++.++.+.+...|+++.-+ .+... ++.
T Consensus 11 Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~----------------------------------~~~~~----~~~ 52 (290)
T 2rgy_A 11 IGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVA----------------------------------TGCGE----STP 52 (290)
T ss_dssp EEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEE----------------------------------CCCSS----SCH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEE----------------------------------eCCCc----hhh
Confidence 5666655556666677777777777767665422 01100 122
Q ss_pred HHH---HHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLK---AAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~---~~~~l~~~~I~~LiviGG~gs 105 (197)
..+ ..+.+...++|++|+.+.+.+
T Consensus 53 ~~~~~~~~~~l~~~~vdgiIi~~~~~~ 79 (290)
T 2rgy_A 53 REQALEAVRFLIGRDCDGVVVISHDLH 79 (290)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSSSC
T ss_pred hhhHHHHHHHHHhcCccEEEEecCCCC
Confidence 334 677788899999999987765
No 80
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=75.20 E-value=32 Score=27.95 Aligned_cols=25 Identities=12% Similarity=0.392 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
+...+..+.+...++|++|+.+.+.
T Consensus 49 ~~~~~~i~~l~~~~vdgiIi~~~~~ 73 (325)
T 2x7x_A 49 SKQAEDVHYFMDEGVDLLIISANEA 73 (325)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCH
Confidence 3345567778889999999987653
No 81
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=74.75 E-value=14 Score=28.99 Aligned_cols=33 Identities=3% Similarity=-0.169 Sum_probs=27.6
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEE
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVF 33 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~ 33 (197)
+||++...-..|-...++.++.+.+..+|++++
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~ 33 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQRYDLA 33 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGGTCEEE
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 478888877788888999999999888888765
No 82
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=74.51 E-value=4.5 Score=35.47 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHH---hhcCCceEEEeeeecccC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQR---EKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~---~~~~~i~vvgiPkTIDND 152 (197)
+.+..+++++.+++.+.|.+|-+||--.+..|..++-.+ ..++.+..+.. ....++++|.||-|--.|
T Consensus 86 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~-------~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtg 156 (407)
T 1vlj_A 86 VLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGA-------LYEGDIWDAFIGKYQIEKALPIFDVLTISATG 156 (407)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHT-------TCSSCGGGGGGTSCCCCCCCCEEEEECSCSSC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHH-------hCCCCHHHHhcccccCCCCCCEEEEeCCCCcc
Confidence 467889999999999999999999988888888776321 00011111110 012478999999886433
No 83
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=74.48 E-value=2 Score=37.30 Aligned_cols=52 Identities=13% Similarity=0.039 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCC
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDF 153 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi 153 (197)
.+..+++.+.+++ +.|.+|-+||--.+..|..++. ..++++|.||-|--.|-
T Consensus 81 ~~~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~----------------------~~~~p~i~IPTTa~tgS 132 (376)
T 1kq3_A 81 DEEIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAY----------------------KLKKPVVIVPTIASTDA 132 (376)
T ss_dssp HHHHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHH----------------------HTTCCEEEEESSCCCSC
T ss_pred HHHHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHH----------------------hcCCCEEEecCccccCc
Confidence 4577888888888 9999999999888888876652 13789999998844333
No 84
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=74.32 E-value=25 Score=28.33 Aligned_cols=26 Identities=15% Similarity=0.420 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
+...+.++.|...++|++|+.+.+.+
T Consensus 44 ~~~~~~i~~l~~~~vdgiIi~~~~~~ 69 (313)
T 2h3h_A 44 NAQLQMLESFIAEGVNGIAIAPSDPT 69 (313)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSTT
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCChH
Confidence 34455677778889999999887643
No 85
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=73.67 E-value=3.1 Score=34.88 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFC 154 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~ 154 (197)
+..++++.+.+ +.|.++++|||||+..+.. .|. .+..++++-.||.==-||+.
T Consensus 52 ~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~~----------~l~----------~~~~~~~l~iiP~Gt~N~~a 104 (304)
T 3s40_A 52 DATKYCQEFAS-KVDLIIVFGGDGTVFECTN----------GLA----------PLEIRPTLAIIPGGTCNDFS 104 (304)
T ss_dssp HHHHHHHHHTT-TCSEEEEEECHHHHHHHHH----------HHT----------TCSSCCEEEEEECSSCCHHH
T ss_pred hHHHHHHHhhc-CCCEEEEEccchHHHHHHH----------HHh----------hCCCCCcEEEecCCcHHHHH
Confidence 44455555544 8899999999999976421 111 11235677777866566664
No 86
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=72.73 E-value=34 Score=27.16 Aligned_cols=67 Identities=13% Similarity=0.049 Sum_probs=42.7
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|=...++.++-+.+..+|++++-..- .+.. +.+.
T Consensus 4 Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~--------------------------------~~~~----~~~~ 47 (288)
T 1gud_A 4 YAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFAS--------------------------------PSEG----DFQS 47 (288)
T ss_dssp EEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEEC--------------------------------SSTT----CHHH
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC--------------------------------CCCC----CHHH
Confidence 677776666677777778888777777765532200 0000 1233
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~g 104 (197)
..+..+.+...++|++|+.+.+.
T Consensus 48 ~~~~~~~~~~~~vdgiIi~~~~~ 70 (288)
T 1gud_A 48 QLQLFEDLSNKNYKGIAFAPLSS 70 (288)
T ss_dssp HHHHHHHHHTSSEEEEEECCSSS
T ss_pred HHHHHHHHHHcCCCEEEEeCCCh
Confidence 44566778888999999987654
No 87
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=71.85 E-value=2.6 Score=37.81 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccC
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDND 152 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDND 152 (197)
.+..+++.+.+++ +.|.+|-+||--.+..|..++- ..++++|.||-|--.|
T Consensus 132 ~~~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~----------------------~~giP~I~IPTTAgtg 182 (450)
T 1ta9_A 132 LVELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAH----------------------SMNLPSIICPTTASSD 182 (450)
T ss_dssp HHHHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHH----------------------HTTCCEEEEESSCSCS
T ss_pred HHHHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHH----------------------hcCCCEEEEeCCCccC
Confidence 4567888888888 9999999999888888776652 1378999999984333
No 88
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=71.72 E-value=16 Score=29.21 Aligned_cols=27 Identities=7% Similarity=0.011 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
.+...+..+.|...++|++|+.+-+..
T Consensus 56 ~~~~~~~~~~l~~~~vdGiIi~~~~~~ 82 (301)
T 3miz_A 56 SEREVEIWKMFQSHRIDGVLYVTMYRR 82 (301)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred hHHHHHHHHHHHhCCCCEEEEecCCcc
Confidence 344567788899999999999986643
No 89
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=70.80 E-value=42 Score=27.44 Aligned_cols=33 Identities=15% Similarity=-0.018 Sum_probs=26.4
Q ss_pred eEEEeCCCCh-hhHhHHHHHHHHHHHHcCCEEEE
Q psy5987 2 TAQVNKKSSS-TGMNAAVRACVRMGIYLGCKVFF 34 (197)
Q Consensus 2 ~aIl~sGG~a-pG~Na~i~~~v~~~~~~g~~v~g 34 (197)
||++..+-.. |=...++.++.+.+...|+++.-
T Consensus 6 Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~ 39 (350)
T 3h75_A 6 VVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRI 39 (350)
T ss_dssp EEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEE
Confidence 6788887766 88888889998888888877653
No 90
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=70.62 E-value=7.1 Score=33.53 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=40.7
Q ss_pred ChhHHHHHHHHHHHhCC---cEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 78 EKAGRLKAAKNLIDRGI---TNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I---~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
+.+..+++.+.++++++ |.+|-+||--.+..|..++-.| ..++++|.||-|.
T Consensus 66 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~~--------------------~rgip~i~IPTTl 120 (348)
T 1ujn_A 66 SLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATY--------------------LRGVAYLAFPTTT 120 (348)
T ss_dssp SHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHB--------------------TTCCEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHh--------------------ccCCCEEEecCcH
Confidence 45778899999999998 8999999987787776665211 1378999999884
No 91
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=70.27 E-value=5.8 Score=34.63 Aligned_cols=53 Identities=6% Similarity=0.151 Sum_probs=41.3
Q ss_pred cChhHHHHHHHHHHHhC--C---cEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 77 REKAGRLKAAKNLIDRG--I---TNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 77 ~~~~~~~~~~~~l~~~~--I---~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
++.+..+++.+.+.+.+ + |.+|-+||--.+..|..++-.| ..++++|.||-|.
T Consensus 84 k~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~--------------------~rgip~i~IPTTl 141 (393)
T 1sg6_A 84 KSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY--------------------MRGVRYVQVPTTL 141 (393)
T ss_dssp SSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG--------------------GGCCEEEEEECSH
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHh--------------------cCCCCEEEECCch
Confidence 34577899999999999 9 9999999987777776655211 1378999999874
No 92
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=68.44 E-value=46 Score=26.97 Aligned_cols=25 Identities=12% Similarity=0.440 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
...+..+.+...++|++|+.+.+.+
T Consensus 104 ~~~~~~~~l~~~~vdgiI~~~~~~~ 128 (332)
T 2hsg_A 104 KELHLLNNMLGKQVDGIIFMSGNVT 128 (332)
T ss_dssp HHHHHHHHTSCCSSCCEEECCSSCC
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCC
Confidence 3445677777889999999987654
No 93
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=68.35 E-value=38 Score=27.47 Aligned_cols=26 Identities=15% Similarity=0.443 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
+...+.++.|...++|+||+..-+.+
T Consensus 47 ~~q~~~i~~li~~~vdgiii~~~~~~ 72 (316)
T 1tjy_A 47 SGQVQLVNNFVNQGYDAIIVSAVSPD 72 (316)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSS
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 44556778888899999999877654
No 94
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=68.26 E-value=35 Score=26.92 Aligned_cols=65 Identities=5% Similarity=0.037 Sum_probs=42.2
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++... ..|-...++.++.+.+...|+++.-+ .+.. +++.
T Consensus 11 Igvi~~~-~~~~~~~~~~gi~~~~~~~g~~~~~~----------------------------------~~~~----~~~~ 51 (288)
T 2qu7_A 11 IAFIVPD-QNPFFTEVLTEISHECQKHHLHVAVA----------------------------------SSEE----NEDK 51 (288)
T ss_dssp EEEEESS-CCHHHHHHHHHHHHHHGGGTCEEEEE----------------------------------ECTT----CHHH
T ss_pred EEEEECC-CCchHHHHHHHHHHHHHHCCCEEEEE----------------------------------eCCC----CHHH
Confidence 6777766 66777777777777777666655321 0000 1233
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..+..+.+...++|++|+.+.+.+
T Consensus 52 ~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 52 QQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp HHHHHHHHHHTTEEEEEECCSSSC
T ss_pred HHHHHHHHHHcCccEEEEecCCCC
Confidence 455677778889999999887654
No 95
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=67.13 E-value=45 Score=26.34 Aligned_cols=66 Identities=6% Similarity=-0.082 Sum_probs=39.9
Q ss_pred eEEEeCC-C---ChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCcc
Q psy5987 2 TAQVNKK-S---SSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFR 77 (197)
Q Consensus 2 ~aIl~sG-G---~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~ 77 (197)
||++... - ..|-...++.++.+.+...|+++.-+. +...
T Consensus 7 Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----------------------------------~~~~--- 49 (287)
T 3bbl_A 7 IGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFP----------------------------------FSED--- 49 (287)
T ss_dssp EEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECC----------------------------------CCSS---
T ss_pred EEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEe----------------------------------CCCc---
Confidence 5555544 3 556677777888777777776654210 0000
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
++...+..+.+...++|++|+.+.+.+
T Consensus 50 -~~~~~~~~~~l~~~~vdgiIi~~~~~~ 76 (287)
T 3bbl_A 50 -RSQIDIYRDLIRSGNVDGFVLSSINYN 76 (287)
T ss_dssp -TTCCHHHHHHHHTTCCSEEEECSCCTT
T ss_pred -hHHHHHHHHHHHcCCCCEEEEeecCCC
Confidence 111234566777889999999887644
No 96
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=66.74 E-value=11 Score=30.45 Aligned_cols=102 Identities=10% Similarity=0.089 Sum_probs=64.7
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCC-------CCeEECChhhhhhhhhhcCceecccCCC
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGG-------DNIVEANWSSVSSIIHKGGTVIGSARCS 74 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~-------~~~~~l~~~~v~~~~~~gGs~LgssR~~ 74 (197)
.+++.+||+.|-.... .......++|+=.|..-|++.. .++-.++.+..+.+...|=.++ +.+
T Consensus 3 ~~~I~~gG~~~~~~~~-------~~~~~~~~I~aDgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~~~---~~~ 72 (222)
T 3mel_A 3 RVLLVAGGNPSDWPTI-------EPATYDYFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHFVQETTETLI---QAP 72 (222)
T ss_dssp EEEEECSSCGGGCCCC-------CGGGCSCEEEETTHHHHHHTTTCCCCEEEECCTTSCTTHHHHHHHHCSSEE---ECC
T ss_pred EEEEEECCCCccchhH-------HhhcCCEEEEEcHHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHhcCCcEE---ECC
Confidence 4788999998743210 1123346889988888887652 1333444555555655542232 334
Q ss_pred CccChhHHHHHHHHHHHhCCc-EEEEecCCCcHHHHHHHHH
Q psy5987 75 DFREKAGRLKAAKNLIDRGIT-NLVVIGGDGSLTGANLFRQ 114 (197)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~I~-~LiviGG~gs~~~a~~l~~ 114 (197)
+.++.-+.+++++.+.+++-+ -++++|+.|. +-=+.|+.
T Consensus 73 ~eKD~TD~e~Al~~~~~~~~~~~I~i~Ga~Gg-RlDH~lan 112 (222)
T 3mel_A 73 AEKDDTDTQLALQEALQRFPQAEMTIIGATGG-RIDHLLAN 112 (222)
T ss_dssp SSCSSCHHHHHHHHHHHHCTTSEEEEECCCSS-CHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhCCCceEEEEccCCC-CHHHHHHH
Confidence 444556788999999888887 9999999987 33344443
No 97
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=65.62 E-value=2.7 Score=36.05 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=42.7
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFC 154 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~ 154 (197)
+.+..+++ +.+++.+.|.+|-+||--.+..|..++- . .++++|.||-|.-.|-.
T Consensus 74 ~~~~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA~------------------~----~~~p~i~IPTT~~tgse 127 (354)
T 3ce9_A 74 DFDEIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMAF------------------L----RKLPFISVPTSTSNDGF 127 (354)
T ss_dssp BHHHHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHHH------------------H----HTCCEEEEESCCSSGGG
T ss_pred CHHHHHHH-HHhhhcCCCEEEEECChHHHHHHHHHHh------------------h----cCCCEEEecCcccCCCC
Confidence 45778888 9999999999999999888888776651 0 27899999998866543
No 98
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=65.18 E-value=40 Score=25.12 Aligned_cols=54 Identities=13% Similarity=-0.017 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCcEEEE-ecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEe
Q psy5987 82 RLKAAKNLIDRGITNLVV-IGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGL 145 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~Liv-iGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgi 145 (197)
.+...+.+...+-|.+++ +|.|+......... +-|++++ +..++.+++.+|+.+
T Consensus 63 ~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~----~~l~~ii------~~l~~~~p~~~ii~~ 117 (200)
T 4h08_A 63 IEELAVVLKNTKFDVIHFNNGLHGFDYTEEEYD----KSFPKLI------KIIRKYAPKAKLIWA 117 (200)
T ss_dssp HHHHHHHHHHSCCSEEEECCCSSCTTSCHHHHH----HHHHHHH------HHHHHHCTTCEEEEE
T ss_pred HHHHHHHHhcCCCCeEEEEeeeCCCCCCHHHHH----HHHHHHH------HHHhhhCCCccEEEe
Confidence 344556677788887766 68888654443333 3445555 355777778887765
No 99
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=65.17 E-value=54 Score=26.59 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
+......+.|...++|++|+.+.+.+
T Consensus 106 ~~~~~~~~~l~~~~vdgiI~~~~~~~ 131 (332)
T 2o20_A 106 EKEEKVLETFLSKQVDGIVYMGSSLD 131 (332)
T ss_dssp HHHHHHHHHHHHTTCSEEEECSSCCC
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 34456778888899999999987544
No 100
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=65.02 E-value=8.9 Score=33.51 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=40.7
Q ss_pred ChhHHHHHHHHHHHhCC---cEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 78 EKAGRLKAAKNLIDRGI---TNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I---~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
+.+..+++.+.+.+.++ |.+|-+||--.+..|..++-.| ..++++|.||-|.
T Consensus 85 t~~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~--------------------~rgip~i~IPTTl 139 (368)
T 3qbe_A 85 DLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATW--------------------LRGVSIVHLPTTL 139 (368)
T ss_dssp BHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHG--------------------GGCCEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHh--------------------ccCCcEEEECCCC
Confidence 45678899999999875 9999999988887776665321 1378999999995
No 101
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=64.79 E-value=56 Score=26.61 Aligned_cols=27 Identities=7% Similarity=0.095 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
++...+..+.|...++|++|+.+.+.+
T Consensus 100 ~~~~~~~~~~l~~~~vdgiI~~~~~~~ 126 (340)
T 1qpz_A 100 LEKQRAYLSMMAQKRVDGLLVMCSEYP 126 (340)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 344556788888899999999987654
No 102
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=64.52 E-value=50 Score=26.00 Aligned_cols=66 Identities=8% Similarity=0.071 Sum_probs=40.5
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++.+.+...|+++.-+ .+.. +++.
T Consensus 11 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~----------------------------------~~~~----~~~~ 52 (285)
T 3c3k_A 11 LLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLC----------------------------------NTES----DLAR 52 (285)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE----------------------------------ECTT----CHHH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEE----------------------------------eCCC----CHHH
Confidence 5666665556666677777777776666655322 0000 1233
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..+..+.+...++|++|+.+.+.+
T Consensus 53 ~~~~~~~l~~~~vdgiI~~~~~~~ 76 (285)
T 3c3k_A 53 SRSCLTLLSGKMVDGVITMDALSE 76 (285)
T ss_dssp HHHHTHHHHTTCCSEEEECCCGGG
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCC
Confidence 345667778889999999876543
No 103
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=64.12 E-value=51 Score=25.93 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=42.8
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++.+.+...|++++-. ++.. +++.
T Consensus 4 Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~----------------------------------~~~~----~~~~ 45 (283)
T 2ioy_A 4 IGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVE----------------------------------DSQN----DSSK 45 (283)
T ss_dssp EEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEE----------------------------------ECTT----CHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEe----------------------------------cCCC----CHHH
Confidence 6777776667777778888888877777665422 0010 1223
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~g 104 (197)
..+..+.+...++|++|+.+.+.
T Consensus 46 ~~~~i~~l~~~~vdgiIi~~~~~ 68 (283)
T 2ioy_A 46 ELSNVEDLIQQKVDVLLINPVDS 68 (283)
T ss_dssp HHHHHHHHHHTTCSEEEECCSST
T ss_pred HHHHHHHHHHcCCCEEEEeCCch
Confidence 34556777789999999987543
No 104
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=61.50 E-value=31 Score=28.51 Aligned_cols=26 Identities=8% Similarity=0.100 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
...+..+.|...++|++|+.+-...-
T Consensus 116 ~~~~~~~~l~~~~vdGiIi~~~~~~~ 141 (366)
T 3h5t_A 116 DHVSAQQLVNNAAVDGVVIYSVAKGD 141 (366)
T ss_dssp CHHHHHHHHHTCCCSCEEEESCCTTC
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCCh
Confidence 35677889999999999999764443
No 105
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=60.57 E-value=26 Score=28.77 Aligned_cols=101 Identities=13% Similarity=0.058 Sum_probs=61.3
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhcc------CC-------CCeEECChhhhhhhhhhcCcee
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVD------GG-------DNIVEANWSSVSSIIHKGGTVI 68 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~------~~-------~~~~~l~~~~v~~~~~~gGs~L 68 (197)
-++|.++|+-|- .+..+. ....-++++=.|..-|++ .. .++-.++++..+.+...|-.++
T Consensus 23 ~~lIv~ng~~~~---~~~~~~----~~~~~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~~~~~~~~~~~~~i~ 95 (247)
T 3s4y_A 23 YCLVILNQPLDN---YFRHLW----NKALLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPEVREYYATKGCELI 95 (247)
T ss_dssp EEEEECSSCCCT---THHHHH----HHCSCEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCHHHHHHHHHTTCEEE
T ss_pred EEEEEECCcchH---HHHHHH----hhCCEEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCHHHHHHHHhcCCEEE
Confidence 478889999772 333333 334467888888887776 20 1333444555555655543344
Q ss_pred cccCCCCccChhHHHHHHHHHHHh------CCcEEEEecCCCcHHHHHHHHH
Q psy5987 69 GSARCSDFREKAGRLKAAKNLIDR------GITNLVVIGGDGSLTGANLFRQ 114 (197)
Q Consensus 69 gssR~~~~~~~~~~~~~~~~l~~~------~I~~LiviGG~gs~~~a~~l~~ 114 (197)
- .+.++.-+.+++++.+.+. +.+-++++|+.|. +-=+.|+.
T Consensus 96 ~----~peKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GG-R~DH~Lan 142 (247)
T 3s4y_A 96 S----TPDQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAG-RFDQIMAS 142 (247)
T ss_dssp E----CCCTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSS-SHHHHHHH
T ss_pred E----CCCCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCC-chhHHHHH
Confidence 2 2233455777877776654 7899999999987 33344443
No 106
>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM superfamily, biosynthetic protein; HET: MP5; 2.10A {Caulobacter crescentus} PDB: 3epm_A* 3epn_A*
Probab=59.88 E-value=5.4 Score=37.11 Aligned_cols=135 Identities=18% Similarity=0.194 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCcee-----cccCCCCccChhHHHHHHHHHHHh
Q psy5987 18 VRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVI-----GSARCSDFREKAGRLKAAKNLIDR 92 (197)
Q Consensus 18 i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~L-----gssR~~~~~~~~~~~~~~~~l~~~ 92 (197)
++.+++.-.++|..-+-++-|.. - ++.+++...+-++.+.|||++ -..+-.++ .+.++++.+.|++|
T Consensus 295 ~~d~ie~QAeqGVDfmTIHaGv~----~--~~v~~~~~R~tgIVSRGGSima~Wml~~~kENpl--Ye~FD~ileI~k~Y 366 (612)
T 3epo_A 295 FRDTLIEQCEQGVDYFTIHAGVR----L--PFIPMTAKRVTGIVSRGGSIMAKWCLAHHKENFL--YERFDEICEIMRAY 366 (612)
T ss_dssp HHHHHHHHHHHTCCEEEECTTCC----G--GGGGGGTTSSSCCCCHHHHHHHHHHHHHTCCCHH--HHTHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCEEEEccccc----H--HHHHHhcCCcCCeecCcHHHHHHHHHHcCCcChH--HHHHHHHHHHHHHh
Confidence 44556665688999999998873 2 456666677888899999976 33454554 46789999999999
Q ss_pred CCcEEEEecC---CCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEE-----Eee-----------eecccCC
Q psy5987 93 GITNLVVIGG---DGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIA-----GLV-----------GSIDNDF 153 (197)
Q Consensus 93 ~I~~LiviGG---~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vv-----giP-----------kTIDNDi 153 (197)
++. +-+|- -|++..|+--+| ++||+--|.+++.+.++ +++|+ +|| |.+-++-
T Consensus 367 DVt--lSLGDglRPG~iaDA~D~AQ-----~~EL~~LGELtkrAwe~--gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~A 437 (612)
T 3epo_A 367 DVS--FSLGDGLRPGSTADANDEAQ-----FSELRTLGELTKVAWKH--GVQVMIEGPGHVAMHKIKANMDEQLKHCHEA 437 (612)
T ss_dssp TCE--EEECCTTCCSSGGGTTCHHH-----HHHHHHHHHHHHHHHHT--TCCEEEECCCBCCHHHHHHHHHHHHHHTTTC
T ss_pred CeE--EecccccCCCccccCCcHHH-----HHHHHHHHHHHHHHHHc--CCcEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 886 45553 245555444333 23443334445566654 45554 356 2333444
Q ss_pred C-------CCCCCCCchhHHHHH
Q psy5987 154 C-------GTDMTIGTDSALHRI 169 (197)
Q Consensus 154 ~-------g~d~s~GfdTA~~~~ 169 (197)
| -||..+|||--...+
T Consensus 438 PfYvLGPLvTDIAPGYDHItsAI 460 (612)
T 3epo_A 438 PFYTLGPLTTDIAPGYDHITSAI 460 (612)
T ss_dssp CEEEECCBSCSSCTTCHHHHHHH
T ss_pred CccccCccccccCCCchHHHHHH
Confidence 3 289999999544333
No 107
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=59.13 E-value=22 Score=28.07 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEec-CCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecc
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIG-GDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSID 150 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviG-G~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTID 150 (197)
+++...+.+++.++.+++.+|.+- +.+.+-++- .-....+||+||....
T Consensus 47 ~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv------------------------A~~t~~PVIgVP~~~~ 96 (174)
T 3lp6_A 47 TPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMV------------------------AAATPLPVIGVPVPLG 96 (174)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHH------------------------HHHCSSCEEEEEECCS
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHH------------------------HhccCCCEEEeeCCCC
Confidence 467778888888888888666554 444444321 1225889999996543
No 108
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=58.87 E-value=70 Score=26.32 Aligned_cols=44 Identities=14% Similarity=0.118 Sum_probs=27.7
Q ss_pred ChhHHHHHHHH----HHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHH
Q psy5987 78 EKAGRLKAAKN----LIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLL 124 (197)
Q Consensus 78 ~~~~~~~~~~~----l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~ 124 (197)
.|+.+.++++. ++.-.++.+++|-..|||.. ++. .+.+.+.+|+
T Consensus 115 ~p~~r~~~~~~~~~l~e~~~~~vvfLVDtSgSM~~--kl~-~vk~al~~Ll 162 (242)
T 3rag_A 115 PPADRARVMQVVEKLEDEVALHLVVCLDTSASMRD--KIP-TVREAVRDLA 162 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHSCEEEEEEEECSGGGTT--THH-HHHHHHHHHH
T ss_pred CcchhcchhhhhhhhcccCCCCEEEEEECcccHHH--HHH-HHHHHHHHHH
Confidence 34444444443 44479999999999999973 443 2334455554
No 109
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron}
Probab=57.48 E-value=22 Score=28.95 Aligned_cols=94 Identities=12% Similarity=0.044 Sum_probs=56.3
Q ss_pred CeEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCC--C-----CeEECChhhhhhhhhhcCceecccCC
Q psy5987 1 MTAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGG--D-----NIVEANWSSVSSIIHKGGTVIGSARC 73 (197)
Q Consensus 1 ~~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~--~-----~~~~l~~~~v~~~~~~gGs~LgssR~ 73 (197)
|-+++.+||+.|- ....+... +....++|+=.|..-|++.. + ++--++++....+.. . -+.
T Consensus 32 ~~v~Iv~~G~~~~-~~~~~~~~----~~~~~iI~aDgGa~~L~~~gi~Pd~ivGDfDSi~~e~~~~~~~----~---i~~ 99 (231)
T 2omk_A 32 PQAIILANGEYPA-HELPLRLL----AEAQFVVCCXXAANEYISRGHTPDVIIGDGDSLLPEYKKRFSS----I---ILQ 99 (231)
T ss_dssp CSEEEECSSSCCC-SHHHHHHH----HHCSCEEEC--CHHHHHHTTCCCSEEESCGGGSCHHHHHHHGG----G---EEC
T ss_pred CEEEEEECCCCch-hHHHHHHH----hcCCEEEEEhHHHHHHHHcCCCCCEEEeCCcCCCHHHHHhcCC----E---EEe
Confidence 4578899998762 22222222 22336888888888887652 1 222223333333331 1 123
Q ss_pred CCccChhHHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 74 SDFREKAGRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
.+.++.-+.+++++...+++.+-++++|+.|.-
T Consensus 100 ~~~kD~TD~e~Al~~a~~~g~~~I~i~Ga~GgR 132 (231)
T 2omk_A 100 ISDQETNDQTKAVHYLQSKGIRKIAIVGATGKR 132 (231)
T ss_dssp CCSSCCCHHHHHHHHHHHTTCCEEEEESCSSSC
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEECccCCc
Confidence 333345578999999999999999999999863
No 110
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=57.45 E-value=24 Score=27.86 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=29.3
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEe-cCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecc
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVI-GGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSID 150 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~Livi-GG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTID 150 (197)
+++...+.++..++.+++.+|.+ |+.+.+-++- .-...++||+||....
T Consensus 52 ~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvv------------------------A~~t~~PVIgVPv~~~ 101 (173)
T 4grd_A 52 MPDEMFDYAEKARERGLRAIIAGAGGAAHLPGML------------------------AAKTTVPVLGVPVASK 101 (173)
T ss_dssp SHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHH------------------------HHHCCSCEEEEEECCT
T ss_pred CHHHHHHHHHHHHhcCCeEEEEeccccccchhhh------------------------eecCCCCEEEEEcCCC
Confidence 34556666666666666655443 5555554431 1225889999997644
No 111
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=55.88 E-value=24 Score=27.74 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=30.2
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecC-CCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeee
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGG-DGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGS 148 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG-~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkT 148 (197)
+++...+.+++.++.+++.+|.+-| .+.+-++ ..-....+||+||..
T Consensus 46 ~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv------------------------vA~~t~~PVIgVP~~ 93 (169)
T 3trh_A 46 TPKETVEFVENADNRGCAVFIAAAGLAAHLAGT------------------------IAAHTLKPVIGVPMA 93 (169)
T ss_dssp SHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHH------------------------HHHTCSSCEEEEECC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH------------------------HHhcCCCCEEEeecC
Confidence 4567777778888778886665544 3334332 122358999999964
No 112
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=55.64 E-value=24 Score=28.29 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=61.1
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCC-------CCeEECChhhhhhhhhhcCceecccCCC
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGG-------DNIVEANWSSVSSIIHKGGTVIGSARCS 74 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~-------~~~~~l~~~~v~~~~~~gGs~LgssR~~ 74 (197)
-+++.+||+.|-.- ....-++|+=.|..-|++.. .++-.++++....+...|=.++ +.+
T Consensus 3 ~~~I~~gG~~~~~~-----------~~~~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~---~~~ 68 (218)
T 3ihk_A 3 KVALFSGGDLTYFT-----------RDFDYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKAKAKKLV---MAP 68 (218)
T ss_dssp EEEEECSSCCSCCC-----------CCCSEEEEETHHHHHHHHTTCCCSEEEECCTTSCHHHHHHHHTTCSSEE---ECC
T ss_pred EEEEEECCCCccCc-----------ccCCEEEEEcHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCCeEE---ECC
Confidence 47888999876321 11246788888887777652 1333344555555554432233 333
Q ss_pred CccChhHHHHHHHHHHHh-CCcEEEEecCCCcHHHHHHHHH
Q psy5987 75 DFREKAGRLKAAKNLIDR-GITNLVVIGGDGSLTGANLFRQ 114 (197)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~-~I~~LiviGG~gs~~~a~~l~~ 114 (197)
+.++.-+.+++++.+.++ +.+-++++|+.|. +-=+.|+.
T Consensus 69 ~eKD~TD~e~Al~~a~~~~~~~~I~i~Ga~GG-R~DH~lan 108 (218)
T 3ihk_A 69 AEKNDTDTELALKTIFDCFGRVEIIVFGAFGG-RIDHMLSN 108 (218)
T ss_dssp SSCSSCHHHHHHHHHHHHTSSCEEEEESCSSS-CHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCEEEEECCCCC-chhhHHHH
Confidence 444556788888888877 7999999999997 33355553
No 113
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=55.27 E-value=75 Score=25.01 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=46.5
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|=...++.++-+.+...|++++-+ .+ . +++.
T Consensus 5 Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~----------------------------------~~-~----~~~~ 45 (306)
T 8abp_A 5 LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI----------------------------------AV-P----DGEK 45 (306)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEE----------------------------------EC-C----SHHH
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEe----------------------------------CC-C----CHHH
Confidence 6788877777888888888888888777665421 00 0 1234
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..+.++.+...++|++|+.+-+..
T Consensus 46 ~~~~i~~l~~~~vdgiii~~~~~~ 69 (306)
T 8abp_A 46 TLNAIDSLAASGAKGFVICTPDPK 69 (306)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHcCCCEEEEeCCCch
Confidence 556778888899999999987654
No 114
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=54.71 E-value=18 Score=28.35 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=32.6
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecC-CCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCCC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGG-DGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGT 156 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG-~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g~ 156 (197)
+++...+.++++++.+++.+|.+-| .+.+-++ ..-...++||+||.... ++.|.
T Consensus 45 tp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv------------------------vA~~t~~PVIgVP~~~~-~l~G~ 99 (166)
T 3oow_A 45 TPDKMFDYAETAKERGLKVIIAGAGGAAHLPGM------------------------VAAKTTLPVLGVPVKSS-TLNGQ 99 (166)
T ss_dssp CHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH------------------------HHHTCSSCEEEEECCCT-TTTTH
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECCcchhhHHH------------------------HHhccCCCEEEeecCcC-CCCCH
Confidence 4566777777777777776665543 4444332 12235899999996443 44443
No 115
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=52.51 E-value=40 Score=29.20 Aligned_cols=33 Identities=9% Similarity=0.208 Sum_probs=26.8
Q ss_pred ChhHHHHHHHHHHHh--CCcEEEEecCCCcHHHHH
Q psy5987 78 EKAGRLKAAKNLIDR--GITNLVVIGGDGSLTGAN 110 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~--~I~~LiviGG~gs~~~a~ 110 (197)
+++++.++++.++++ +.|++||.=|.+||.-.+
T Consensus 84 t~~~w~~la~~I~~~~~~~dG~VItHGTDTmeeTA 118 (358)
T 2him_A 84 TPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTA 118 (358)
T ss_dssp CHHHHHHHHHHHHHHGGGCSEEEEECCSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEecCchHHHHHH
Confidence 567787877777766 899999999999996543
No 116
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=49.97 E-value=26 Score=27.30 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=29.7
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEec-CCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecc
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIG-GDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSID 150 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviG-G~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTID 150 (197)
+++...+.+++.++.+++.+|.+- +.+.+-++ ..-...++||+||....
T Consensus 43 ~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv------------------------vA~~t~~PVIgVP~~~~ 92 (163)
T 3ors_A 43 TPKMMVQFASEARERGINIIIAGAGGAAHLPGM------------------------VASLTTLPVIGVPIETK 92 (163)
T ss_dssp SHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH------------------------HHHHCSSCEEEEEECCT
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH------------------------HHhccCCCEEEeeCCCC
Confidence 456667777777777777655543 34444332 11225889999996544
No 117
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=48.94 E-value=93 Score=24.26 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=44.7
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++.+.+...|+++.-+ + +.. +++.
T Consensus 5 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--------~--------------------------~~~----~~~~ 46 (290)
T 2fn9_A 5 MAIVISTLNNPWFVVLAETAKQRAEQLGYEATIF--------D--------------------------SQN----DTAK 46 (290)
T ss_dssp EEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEE--------E--------------------------CTT----CHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEe--------C--------------------------CCC----CHHH
Confidence 6788776667778888888888888877665421 0 000 1233
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..+..+.+...++|++|+.+.+.+
T Consensus 47 ~~~~~~~l~~~~vdgiI~~~~~~~ 70 (290)
T 2fn9_A 47 ESAHFDAIIAAGYDAIIFNPTDAD 70 (290)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCTT
T ss_pred HHHHHHHHHHcCCCEEEEecCChH
Confidence 445677777889999999886643
No 118
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=48.85 E-value=1.2e+02 Score=26.35 Aligned_cols=136 Identities=16% Similarity=0.148 Sum_probs=76.1
Q ss_pred EEEEEcCcchhhccC----------CCCeEECChhhhhhhhhhcC-----ceecccCCCCccChhHHHHHHHHHHHhCCc
Q psy5987 31 KVFFIKEGYQGMVDG----------GDNIVEANWSSVSSIIHKGG-----TVIGSARCSDFREKAGRLKAAKNLIDRGIT 95 (197)
Q Consensus 31 ~v~g~~~G~~GL~~~----------~~~~~~l~~~~v~~~~~~gG-----s~LgssR~~~~~~~~~~~~~~~~l~~~~I~ 95 (197)
..+||++|..|=++. .+.|.-.+++-...+..+-| .+|.-.+..|-.+.+.+..+.+.|++.++.
T Consensus 178 ~PVg~Kngt~gti~~ai~Ai~aa~~pH~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~gpNY~~~~v~~a~~~l~k~~l~ 257 (346)
T 3tqk_A 178 ASIGFKNATNGDVQVAVDAVKSATYPHHFLSTTKSGSTAIFATKGNQNGHVILRGGASGPNFSKEHVDDCIAKLKKADIN 257 (346)
T ss_dssp SEEEEECCTTCCSHHHHHHHHHHTSCCEEEEECTTSCEEEEECCCCSCEEEEECCCTTCCCCSHHHHHHHHHHHHHTTCC
T ss_pred CceEEeCCCCCchHHHhhHHHHHhCCceEEeeCCCCcEEEEECCCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 788999999885543 24566666543333333434 144333442445678899999999999987
Q ss_pred EEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEee---------eecc--cCCCC---CCCCCC
Q psy5987 96 NLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLV---------GSID--NDFCG---TDMTIG 161 (197)
Q Consensus 96 ~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiP---------kTID--NDi~g---~d~s~G 161 (197)
--++| |=|....++=++..+.++++.++ ++.. +-.|+||= -.+. .-.+| ||.|+|
T Consensus 258 ~~imV--DcSH~NS~K~~~~Q~~V~~~v~~-------q~~~--~~~I~GvMiES~l~~G~Q~~~~~~l~yG~SITD~Ci~ 326 (346)
T 3tqk_A 258 TKVMI--DCSHGNSQKDHSKQISVLADICE-------QIKH--SNDIFGVMIESNLVAGNQDINKKPLTYGQSVTDKCVD 326 (346)
T ss_dssp CCEEE--ESSHHHHTTCGGGHHHHHHHHHH-------HHHH--CSSEEEEEEEBCSEEEECCTTCSSCCTTEESSSCBBC
T ss_pred CeEEE--ecCcccccccHHHHHHHHHHHHH-------HHhc--CCceeeeeHHhhhhccCCCCCCCCCcCCccccccccC
Confidence 65665 33333333322222334444331 1111 33455531 0111 12334 999999
Q ss_pred chhHHHHHHHHHHHHH
Q psy5987 162 TDSALHRIIEAIDAIV 177 (197)
Q Consensus 162 fdTA~~~~~~~i~~l~ 177 (197)
+++....+.+.-+.+.
T Consensus 327 W~~T~~ll~~la~~v~ 342 (346)
T 3tqk_A 327 FEETVKMLEMLAEAVQ 342 (346)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999877766655543
No 119
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=48.74 E-value=93 Score=24.19 Aligned_cols=68 Identities=12% Similarity=0.025 Sum_probs=43.2
Q ss_pred eEEEeCCCC--hhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccCh
Q psy5987 2 TAQVNKKSS--STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREK 79 (197)
Q Consensus 2 ~aIl~sGG~--apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~ 79 (197)
||++...-. .|-...++.++.+.+...|+++.-+ ..... .++
T Consensus 8 Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~----------------------------------~~~~~--~~~ 51 (289)
T 3brs_A 8 MICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFM----------------------------------APEKE--EDY 51 (289)
T ss_dssp EEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEEC----------------------------------CCSST--TCH
T ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEe----------------------------------cCCCC--CCH
Confidence 567766555 6777777788777777777655321 00000 122
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
+...+..+.|...++|++|+.+.+.+
T Consensus 52 ~~~~~~~~~l~~~~vdgii~~~~~~~ 77 (289)
T 3brs_A 52 LVQNELIEEAIKRKPDVILLAAADYE 77 (289)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCSCTT
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCChH
Confidence 34456677888899999999887654
No 120
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=47.69 E-value=25 Score=27.92 Aligned_cols=49 Identities=27% Similarity=0.371 Sum_probs=31.6
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEe-cCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecc
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVI-GGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSID 150 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~Livi-GG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTID 150 (197)
+++...+++++.++.+++.+|.+ |+.+.+-++- .-....+||+||....
T Consensus 53 ~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv------------------------A~~t~~PVIgVP~~~~ 102 (183)
T 1o4v_A 53 TPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMV------------------------ASITHLPVIGVPVKTS 102 (183)
T ss_dssp CHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHH------------------------HHHCSSCEEEEEECCT
T ss_pred CHHHHHHHHHHHHhCCCcEEEEecCcccccHHHH------------------------HhccCCCEEEeeCCCC
Confidence 45667777777777778866654 4444444431 1225889999997653
No 121
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=47.52 E-value=24 Score=27.85 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=26.5
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEec-CCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeee
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIG-GDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGS 148 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviG-G~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkT 148 (197)
+++...+.+++.++.+++.+|.+- +.+.+-++ ..-...++||+||..
T Consensus 52 ~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv------------------------vA~~t~~PVIgVP~~ 99 (174)
T 3kuu_A 52 TPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGM------------------------LAAKTLVPVLGVPVQ 99 (174)
T ss_dssp CHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHH------------------------HHHTCSSCEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH------------------------HHhccCCCEEEeeCC
Confidence 345556666666666666554443 33333322 222358999999964
No 122
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=46.86 E-value=1.4e+02 Score=25.57 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=26.1
Q ss_pred ChhHHHHHHHHHHHh---CCcEEEEecCCCcHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDR---GITNLVVIGGDGSLTGANL 111 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~---~I~~LiviGG~gs~~~a~~ 111 (197)
+++++.++++.++++ +.|++||.=|.+||.....
T Consensus 70 ~~~~~~~la~~i~~~~~~~~dGvVItHGTDTm~~TA~ 106 (334)
T 3nxk_A 70 CDEIWLRLAKKIAKLFAEGIDGVVITHGTDTMEETAY 106 (334)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEECCCchHHHHHH
Confidence 567777777666653 7999999999999966443
No 123
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=45.68 E-value=1.1e+02 Score=24.03 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=45.1
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCC-EEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChh
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGC-KVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKA 80 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~-~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~ 80 (197)
||++...-..|-...++.++.+.+...|+ +++-+ .+.. +.+
T Consensus 5 Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----------------------------------~~~~----~~~ 46 (309)
T 2fvy_A 5 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN----------------------------------DSQN----DQS 46 (309)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEE----------------------------------ECTT----CHH
T ss_pred EEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEe----------------------------------cCCC----CHH
Confidence 67888776777788888888888877776 55322 0000 123
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
...+..+.+...++|++|+.+.+.+
T Consensus 47 ~~~~~~~~~~~~~vdgiii~~~~~~ 71 (309)
T 2fvy_A 47 KQNDQIDVLLAKGVKALAINLVDPA 71 (309)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSSGG
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 3445677788899999999887654
No 124
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=44.49 E-value=1.3e+02 Score=24.56 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
+...+..+.|...++|++|+.+...
T Consensus 105 ~~~~~~l~~l~~~~vdGiIi~~~~~ 129 (349)
T 1jye_A 105 EACKTAVHNLLAQRVSGLIINYPLD 129 (349)
T ss_dssp HHHHHHHHHHHTTTCSCEEEESCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCC
Confidence 3345667788889999999987543
No 125
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=44.42 E-value=1.5e+02 Score=25.33 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=26.6
Q ss_pred ChhHHHHHHHHHHH----hCCcEEEEecCCCcHHHHHH
Q psy5987 78 EKAGRLKAAKNLID----RGITNLVVIGGDGSLTGANL 111 (197)
Q Consensus 78 ~~~~~~~~~~~l~~----~~I~~LiviGG~gs~~~a~~ 111 (197)
+++++.++++.+++ .+.|++||.=|.+||.....
T Consensus 71 t~~~w~~la~~i~~~l~~~~~dGvVItHGTDTm~~TA~ 108 (337)
T 4pga_A 71 TNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAY 108 (337)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCSEEEEECCSTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhccCCCeEEEECCCccHHHHHH
Confidence 56777777777766 47999999999999966443
No 126
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=44.37 E-value=31 Score=27.41 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=27.4
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEe-cCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecc
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVI-GGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSID 150 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~Livi-GG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTID 150 (197)
+++...+++++.++.+++.+|.+ |+.+.+-++ ..-....+||+||....
T Consensus 61 ~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv------------------------vA~~t~~PVIgVP~~~~ 110 (182)
T 1u11_A 61 TPDRLADYARTAAERGLNVIIAGAGGAAHLPGM------------------------CAAWTRLPVLGVPVESR 110 (182)
T ss_dssp CHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH------------------------HHHHCSSCEEEEEECCT
T ss_pred CHHHHHHHHHHHHhCCCcEEEEecCchhhhHHH------------------------HHhccCCCEEEeeCCCC
Confidence 34555666666655666655443 333333332 12235889999997543
No 127
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=43.51 E-value=30 Score=27.47 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=9.6
Q ss_pred cCCceEEEeeee
Q psy5987 137 YCHLHIAGLVGS 148 (197)
Q Consensus 137 ~~~i~vvgiPkT 148 (197)
...++||+||..
T Consensus 98 ~T~~PVIGVPv~ 109 (181)
T 4b4k_A 98 KTNLPVIGVPVQ 109 (181)
T ss_dssp TCCSCEEEEECC
T ss_pred cCCCCEEEEecC
Confidence 458999999963
No 128
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=43.43 E-value=52 Score=25.48 Aligned_cols=47 Identities=11% Similarity=0.062 Sum_probs=28.7
Q ss_pred ChhHHHHHHHHHHHh-CCcEEEEecCC-CcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeee
Q psy5987 78 EKAGRLKAAKNLIDR-GITNLVVIGGD-GSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGS 148 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~-~I~~LiviGG~-gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkT 148 (197)
+++...+.+++.++. +++.+|.+-|- +.+-++ ..-....+||+||..
T Consensus 42 ~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpgv------------------------vA~~t~~PVIgVP~~ 90 (159)
T 3rg8_A 42 TAEHVVSMLKEYEALDRPKLYITIAGRSNALSGF------------------------VDGFVKGATIACPPP 90 (159)
T ss_dssp CHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHH------------------------HHHHSSSCEEECCCC
T ss_pred CHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHH------------------------HHhccCCCEEEeeCC
Confidence 456677777777765 57777766444 333332 112257899999943
No 129
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=43.10 E-value=25 Score=27.62 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=29.4
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEe-cCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecc
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVI-GGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSID 150 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~Livi-GG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTID 150 (197)
+++...+++++.++.+++.+|.+ |+.+.+-++ ..-....+||+||....
T Consensus 51 ~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv------------------------vA~~t~~PVIgVP~~~~ 100 (170)
T 1xmp_A 51 TPDYMFEYAETARERGLKVIIAGAGGAAHLPGM------------------------VAAKTNLPVIGVPVQSK 100 (170)
T ss_dssp SHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH------------------------HHTTCCSCEEEEEECCT
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH------------------------HHhccCCCEEEeeCCCC
Confidence 45566666666666667755544 344444332 22335899999997543
No 130
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=41.96 E-value=36 Score=25.24 Aligned_cols=42 Identities=19% Similarity=0.091 Sum_probs=35.4
Q ss_pred cChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHH
Q psy5987 77 REKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPE 118 (197)
Q Consensus 77 ~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~ 118 (197)
..+++.+++.+++.++++|+|++...+..--.+.++-..+|.
T Consensus 70 WKp~eVdkm~~k~~q~~~dGl~iYCDdeNk~~m~Ki~~~lP~ 111 (126)
T 2rbg_A 70 WKKNEVDIFLKNLEKSEVDGLLVYCDDENKVFMSKIVDNLPT 111 (126)
T ss_dssp ECGGGHHHHHHHHTTCCCCEEEEEECGGGHHHHHHHHHTSCH
T ss_pred eCHHHHHHHHHHHHHhCCCceEEEeCCCchhHHHHHHHhccH
Confidence 357899999999999999999999999988887777655433
No 131
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=41.57 E-value=1.2e+02 Score=23.44 Aligned_cols=34 Identities=12% Similarity=0.013 Sum_probs=26.4
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEE
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFI 35 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~ 35 (197)
||++...-..|=...++.++.+.+...|+++.-+
T Consensus 8 Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 41 (280)
T 3gyb_A 8 IAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVI 41 (280)
T ss_dssp EEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEE
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 6788877777788888888888888888777543
No 132
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=41.08 E-value=1.7e+02 Score=24.87 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=26.2
Q ss_pred ChhHHHHHHHHHHHh----CCcEEEEecCCCcHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDR----GITNLVVIGGDGSLTGANL 111 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~----~I~~LiviGG~gs~~~a~~ 111 (197)
+++++.++++.++++ +.|++||.=|.+||.-...
T Consensus 63 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~ 100 (331)
T 1agx_A 63 TDKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETAF 100 (331)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCcchHHHHHH
Confidence 567777776666664 7999999999999976443
No 133
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=40.88 E-value=28 Score=28.05 Aligned_cols=96 Identities=8% Similarity=0.002 Sum_probs=59.0
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCC-------CCeEECChhhhhhhhhhcCceecccCCC
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGG-------DNIVEANWSSVSSIIHKGGTVIGSARCS 74 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~-------~~~~~l~~~~v~~~~~~gGs~LgssR~~ 74 (197)
..++.+|||..-.-. .+...+....++++=.|..-|++.. .++-.++++....+...|-.++- .+
T Consensus 3 ~~~Iv~gG~~~~~~~-----l~~~~~~~~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~---~p 74 (222)
T 3lm8_A 3 TINIVAGGPKNLIPD-----LTGYTDEHTLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHV---YQ 74 (222)
T ss_dssp EEEEECSSCGGGSCC-----SGGGCCTTEEEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCTTCEE---EC
T ss_pred EEEEEECCchHHHHH-----HHHHhhcCCEEEEECHHHHHHHHcCCCCcEEEeCcccCCHHHHHHHHhcCCeEEE---eC
Confidence 367888997642211 1111122236777877777776531 13334555556666655433443 23
Q ss_pred CccChhHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 75 DFREKAGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
+.++.-+.+++++.+.+++.+-++++|+.|.
T Consensus 75 ~eKD~TD~e~Al~~a~~~g~~~I~i~Ga~Gg 105 (222)
T 3lm8_A 75 AEKDQTDLDLALDWALEKQPDIIQIFGITGG 105 (222)
T ss_dssp CCSSSCHHHHHHHHHHHHCCSEEEEESCCCS
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 2334567889999999999999999999997
No 134
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=40.40 E-value=1.7e+02 Score=24.79 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=25.6
Q ss_pred ChhHHHHHHHHHHHh----CCcEEEEecCCCcHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDR----GITNLVVIGGDGSLTGANL 111 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~----~I~~LiviGG~gs~~~a~~ 111 (197)
+++++.++++.++++ +.|++||.=|.+||.-...
T Consensus 64 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~ 101 (330)
T 1wsa_A 64 TGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAF 101 (330)
T ss_dssp CHHHHHHHHHHHHHHHHSTTCCCEEEECCSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEEcCcchHHHHHH
Confidence 466776666666554 7999999999999976443
No 135
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=39.71 E-value=1.3e+02 Score=24.16 Aligned_cols=87 Identities=9% Similarity=-0.006 Sum_probs=49.2
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
+++||.|+-.-|+= +++++.+...|++|+....-- . ..+.+..+....|.... -.-+..+++.
T Consensus 32 ~vlVTGasg~~GIG---~~ia~~la~~G~~V~~~~r~~--------~----~~~~~~~~~~~~~~~~~--~~~Dv~d~~~ 94 (296)
T 3k31_A 32 KGVIIGVANDKSLA---WGIAKAVCAQGAEVALTYLSE--------T----FKKRVDPLAESLGVKLT--VPCDVSDAES 94 (296)
T ss_dssp EEEEECCCSTTSHH---HHHHHHHHHTTCEEEEEESSG--------G----GHHHHHHHHHHHTCCEE--EECCTTCHHH
T ss_pred EEEEEeCCCCCCHH---HHHHHHHHHCCCEEEEEeCCh--------H----HHHHHHHHHHhcCCeEE--EEcCCCCHHH
Confidence 46666654445665 445666667899988762210 0 11223333333333211 1122345677
Q ss_pred HHHHHHHHHHh--CCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDR--GITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~--~I~~LiviGG~gs 105 (197)
.+++++.+.+. +||.||-.-|...
T Consensus 95 v~~~~~~~~~~~g~iD~lVnnAG~~~ 120 (296)
T 3k31_A 95 VDNMFKVLAEEWGSLDFVVHAVAFSD 120 (296)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCC
Confidence 77777776655 8999999988653
No 136
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=39.53 E-value=1.8e+02 Score=24.72 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=26.2
Q ss_pred ChhHHHHHHHHHHHh----CCcEEEEecCCCcHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDR----GITNLVVIGGDGSLTGANL 111 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~----~I~~LiviGG~gs~~~a~~ 111 (197)
+++++.++++.++++ +.|++||.=|.+||.-...
T Consensus 66 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~ 103 (332)
T 2wlt_A 66 NEEIWFKLAQRAQELLDDSRIQGVVITHGTDTLEESAY 103 (332)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHH
Confidence 567777777666654 7999999999999976443
No 137
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=38.13 E-value=1.5e+02 Score=23.40 Aligned_cols=91 Identities=19% Similarity=0.140 Sum_probs=46.1
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHc--CCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecc-cCCCCccC
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYL--GCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS-ARCSDFRE 78 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~--g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~Lgs-sR~~~~~~ 78 (197)
++|++||.+. | ...+.+..... +.+|.++. .+.++ ..+..+...-|-..-. .+ +.+.+
T Consensus 6 i~vl~sG~g~---~--~~~~l~~l~~~~l~~~I~~Vi-------t~~~~------~~v~~~A~~~gIp~~~~~~-~~~~~ 66 (212)
T 3av3_A 6 LAVFASGSGT---N--FQAIVDAAKRGDLPARVALLV-------CDRPG------AKVIERAARENVPAFVFSP-KDYPS 66 (212)
T ss_dssp EEEECCSSCH---H--HHHHHHHHHTTCCCEEEEEEE-------ESSTT------CHHHHHHHHTTCCEEECCG-GGSSS
T ss_pred EEEEEECCcH---H--HHHHHHHHHhCCCCCeEEEEE-------eCCCC------cHHHHHHHHcCCCEEEeCc-ccccc
Confidence 7899999865 2 33444444433 45776653 22001 1233333333432211 11 11223
Q ss_pred hhHH-HHHHHHHHHhCCcEEEEecCCCcHHHHHHH
Q psy5987 79 KAGR-LKAAKNLIDRGITNLVVIGGDGSLTGANLF 112 (197)
Q Consensus 79 ~~~~-~~~~~~l~~~~I~~LiviGG~gs~~~a~~l 112 (197)
++.+ +.+.+.|++++.|.+++. |.+-+-....|
T Consensus 67 ~~~~~~~~~~~l~~~~~Dliv~a-~y~~il~~~~l 100 (212)
T 3av3_A 67 KAAFESEILRELKGRQIDWIALA-GYMRLIGPTLL 100 (212)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEES-SCCSCCCHHHH
T ss_pred hhhhHHHHHHHHHhcCCCEEEEc-hhhhhCCHHHH
Confidence 3444 367899999999965555 56655443333
No 138
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=37.64 E-value=1.9e+02 Score=24.49 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=26.2
Q ss_pred ChhHHHHHHHHHHHh----CCcEEEEecCCCcHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDR----GITNLVVIGGDGSLTGANL 111 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~----~I~~LiviGG~gs~~~a~~ 111 (197)
+++++.++++.++++ +.|++||.=|.+||.-...
T Consensus 66 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~ 103 (327)
T 1o7j_A 66 TGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAY 103 (327)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCSTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHH
Confidence 567777777666654 7999999999999976443
No 139
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=37.07 E-value=1.4e+02 Score=23.04 Aligned_cols=103 Identities=7% Similarity=0.101 Sum_probs=58.9
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcC----------cchhhccCCCCeEECChhhhhhhhhhcCceeccc
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKE----------GYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSA 71 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~----------G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~Lgss 71 (197)
||++...-..|-...++.++.+.+...|+++.-+.. +++|++--. .+.+.+.+..+...+=.++--.
T Consensus 11 Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~vdgiI~~~---~~~~~~~~~~l~~~~iPvV~~~ 87 (277)
T 3cs3_A 11 IGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEKMVDGAIILD---WTFPTKEIEKFAERGHSIVVLD 87 (277)
T ss_dssp EEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCTTTCSEEEEEC---TTSCHHHHHHHHHTTCEEEESS
T ss_pred EEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhhccccEEEEec---CCCCHHHHHHHHhcCCCEEEEe
Confidence 788887777888899999999999999998765533 233332110 0011223333333222222222
Q ss_pred CCCC--------ccChhHHHHHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 72 RCSD--------FREKAGRLKAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 72 R~~~--------~~~~~~~~~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
+..+ ..+.+....+.+.|.+++-..+.+++|.....
T Consensus 88 ~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~ 131 (277)
T 3cs3_A 88 RTTEHRNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGY 131 (277)
T ss_dssp SCCCSTTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSH
T ss_pred cCCCCCCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCc
Confidence 2111 01233456677888888888888888875433
No 140
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=37.03 E-value=1.6e+02 Score=23.59 Aligned_cols=25 Identities=4% Similarity=0.046 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
+......+.|...++|++| .+.+.+
T Consensus 103 ~~~~~~~~~l~~~~vdgiI-~~~~~~ 127 (330)
T 3ctp_A 103 EKEKTYLEVLQSHRVAGII-ASRSQC 127 (330)
T ss_dssp HHHHHHHHHHHHTTCSEEE-EETCCC
T ss_pred HHHHHHHHHHHhCCCCEEE-ECCCCC
Confidence 4445677888889999999 876544
No 141
>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase, thiamine pyrophosphokinase, NESG, LPR114, structural genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1}
Probab=36.07 E-value=46 Score=26.88 Aligned_cols=102 Identities=9% Similarity=0.048 Sum_probs=56.4
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCC-------CCeEECChhhhhhhhhhcCceecccCCC
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGG-------DNIVEANWSSVSSIIHKGGTVIGSARCS 74 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~-------~~~~~l~~~~v~~~~~~gGs~LgssR~~ 74 (197)
-+++.+||+.+-.- .........++|+=.|..-|++.. .++-.++++....+...|-.++ +.+
T Consensus 4 ~~~Iv~gG~~~~~~-------~~~~~~~~~~I~aDgGa~~l~~~g~~Pd~ivGDfDSi~~e~~~~~~~~~~~~~---~~~ 73 (227)
T 3cq9_A 4 IVNLLVGGPTANYP-------ADLTTIPGPWVGADRGALRLVKRGIQPVMVVGDFDSIDAAELQTVKDALVGAI---VVK 73 (227)
T ss_dssp EEEEECSSCGGGCS-------SCGGGSCSCEEEETHHHHHHHHTTCCCSEEESCC---------CHHHHHHTSE---EEC
T ss_pred EEEEEECCcchHHH-------HHHhhcCCEEEEEcHHHHHHHHcCCCCCEEEeCCcCCCHHHHHHHHhcCceEE---ECC
Confidence 36788999853211 111223346888888888777652 1344444555555554442222 233
Q ss_pred CccChhHHHHHHHHHHHhCCc-EEEEecCCCcHHHHHHHHH
Q psy5987 75 DFREKAGRLKAAKNLIDRGIT-NLVVIGGDGSLTGANLFRQ 114 (197)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~I~-~LiviGG~gs~~~a~~l~~ 114 (197)
+.++.-+.+++++.+.+++-+ -++++|+.|.-- =+.|+.
T Consensus 74 ~~KD~TD~e~Al~~a~~~~~~~~I~i~Ga~GgR~-DH~laN 113 (227)
T 3cq9_A 74 PDQDHTDTQLAIKSIFEQLQPDEVHLYGATGGRL-DHLLAN 113 (227)
T ss_dssp CCSSSCHHHHHHHHHHHHTCCSEEEEESCSSSCH-HHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCceEEEEcCCCCch-hHHHHH
Confidence 333456788999998888877 899999998732 244443
No 142
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=35.92 E-value=17 Score=27.42 Aligned_cols=49 Identities=16% Similarity=0.117 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCC
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDF 153 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi 153 (197)
+.+.+++.|++.+.+-++++||-.-.+.+.. ++ -.+.+--+|..++.|.
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~-----------lv-------------Del~lt~ip~~~~G~~ 129 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQP-----------HL-------------DRMVLSRVPGEYEGDT 129 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGG-----------GC-------------SEEEEEEEEEECCCSE
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHH-----------hC-------------CEEEEEEEccccccCE
Confidence 4677888888878888999999754443321 11 2466777898886664
No 143
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=35.31 E-value=1.8e+02 Score=23.52 Aligned_cols=59 Identities=8% Similarity=-0.088 Sum_probs=36.2
Q ss_pred ChhHHHHHHHHHHHh----CCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeeccc
Q psy5987 78 EKAGRLKAAKNLIDR----GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDN 151 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~----~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDN 151 (197)
++++++...+.+++. +.|+ |.+|--++-.....+.+. + +..+++++++.++.=|.-.|+
T Consensus 58 ~~~~~~~~~~~~~~~~~l~~~d~-v~~G~l~~~~~~~~v~~~--------l------~~~~~~~~~~~vv~DPVm~~~ 120 (289)
T 3pzs_A 58 PASHLTDIVQGIADIDRLKDCDA-VLSGYIGSPEQGSHILAA--------V------AQVKQANPDAWYFCDPVMGHP 120 (289)
T ss_dssp CHHHHHHHHHHHHHTTCGGGCCE-EEECCCSSHHHHHHHHHH--------H------HHHHHHCTTCEEEECCCCEET
T ss_pred CHHHHHHHHHHHHhcCCccCCCE-EEECCCCCHHHHHHHHHH--------H------HHHHhhCCCCeEEEcCccccC
Confidence 456677777777765 6787 688877776666655542 2 234455555666655544444
No 144
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=34.16 E-value=80 Score=26.44 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=46.9
Q ss_pred EeCCCChhh-HhHHHHHHHHHHHHcCCEEEEE--cCcchh-hccC-CCCeEECChhhhhhhhhhcCceecccCCCCccCh
Q psy5987 5 VNKKSSSTG-MNAAVRACVRMGIYLGCKVFFI--KEGYQG-MVDG-GDNIVEANWSSVSSIIHKGGTVIGSARCSDFREK 79 (197)
Q Consensus 5 l~sGG~apG-~Na~i~~~v~~~~~~g~~v~g~--~~G~~G-L~~~-~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~ 79 (197)
+..|| +.| ++-+ -++.+.++.+|++|..+ .+|.+. ++.. +..+..+.- ..+...+ .+..-+ .+++-.
T Consensus 7 i~~GG-TgGHi~pa-lala~~L~~~g~~V~~vg~~~g~e~~~v~~~g~~~~~i~~---~~~~~~~--~~~~~~-~~~~~~ 78 (365)
T 3s2u_A 7 IMAGG-TGGHVFPA-LACAREFQARGYAVHWLGTPRGIENDLVPKAGLPLHLIQV---SGLRGKG--LKSLVK-APLELL 78 (365)
T ss_dssp EECCS-SHHHHHHH-HHHHHHHHHTTCEEEEEECSSSTHHHHTGGGTCCEEECC--------------------CHHHHH
T ss_pred EEcCC-CHHHHHHH-HHHHHHHHhCCCEEEEEECCchHhhchhhhcCCcEEEEEC---CCcCCCC--HHHHHH-HHHHHH
Confidence 34455 445 4444 45777788889988655 344432 2221 112333321 1111110 000000 011111
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
..+.++.+.+++++.|.++..||.-+.-.
T Consensus 79 ~~~~~~~~~l~~~~PDvVi~~g~~~s~p~ 107 (365)
T 3s2u_A 79 KSLFQALRVIRQLRPVCVLGLGGYVTGPG 107 (365)
T ss_dssp HHHHHHHHHHHHHCCSEEEECSSSTHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcchHHH
Confidence 23456678899999999999999877643
No 145
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=32.46 E-value=18 Score=26.42 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecccCCCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCG 155 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTIDNDi~g 155 (197)
.+.+.+..++++.| |||+|-.|.-.-...+ + |++++...++ .+++|..||..-++....
T Consensus 106 ~~~I~~~a~~~~~D-lIV~G~~g~~~~~~~~---~----------Gsv~~~vl~~-~~~PVlvv~~~~~~~~~~ 164 (170)
T 2dum_A 106 WDEIVKVAEEENVS-LIILPSRGKLSLSHEF---L----------GSTVMRVLRK-TKKPVLIIKEVDENELAK 164 (170)
T ss_dssp HHHHHHHHHHTTCS-EEEEESCCCCC--TTC---C----------CHHHHHHHHH-CSSCEEEECCCCCC----
T ss_pred HHHHHHHHHHcCCC-EEEECCCCCCccccce---e----------chHHHHHHHh-CCCCEEEEccCCcccccc
Confidence 46778888888999 7777766432110000 1 1122222222 478999999776666443
No 146
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=31.11 E-value=49 Score=22.98 Aligned_cols=23 Identities=26% Similarity=0.162 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
.+.+.+..++++.| ||++|..|.
T Consensus 98 ~~~I~~~a~~~~~d-liV~G~~g~ 120 (138)
T 1q77_A 98 SEEVKKFVEGKGYE-LVVWACYPS 120 (138)
T ss_dssp HHHHHHHHTTSCCS-EEEECSCCG
T ss_pred HHHHHHHHHhcCCC-EEEEeCCCC
Confidence 46777888888998 888898876
No 147
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=31.02 E-value=1.4e+02 Score=21.79 Aligned_cols=63 Identities=17% Similarity=0.077 Sum_probs=42.4
Q ss_pred EEEeCCCChhh---HhHHHHHHHHHHHHcCCEEEEEcCcch-----hhccCCCCeEECChhhhhhhhhhcCce
Q psy5987 3 AQVNKKSSSTG---MNAAVRACVRMGIYLGCKVFFIKEGYQ-----GMVDGGDNIVEANWSSVSSIIHKGGTV 67 (197)
Q Consensus 3 aIl~sGG~apG---~Na~i~~~v~~~~~~g~~v~g~~~G~~-----GL~~~~~~~~~l~~~~v~~~~~~gGs~ 67 (197)
+|+..||..|- -|..+...++.+..++..|.++-.|.. ||+++ .-.--.|.....+...+..+
T Consensus 66 ~livpGG~~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g--~~~T~~~~~~~~l~~~~~~~ 136 (168)
T 3l18_A 66 ALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGPQILISAKVLKG--RRGTSTITIRDDVINAGAEW 136 (168)
T ss_dssp EEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTT--CEECCCGGGHHHHHHTTCEE
T ss_pred EEEECCCcCHHHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHCCccCC--CEEEeCccHHHHHHhCCCEE
Confidence 56777887542 355677778887888999999999974 55666 44444566555665554433
No 148
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=31.01 E-value=1.3e+02 Score=23.20 Aligned_cols=81 Identities=10% Similarity=0.056 Sum_probs=48.0
Q ss_pred HcCCEEEEEcCcchhhccCC--CCeEECChh--h----hhhhhhhcCc--eecccCCC-----------------CccCh
Q psy5987 27 YLGCKVFFIKEGYQGMVDGG--DNIVEANWS--S----VSSIIHKGGT--VIGSARCS-----------------DFREK 79 (197)
Q Consensus 27 ~~g~~v~g~~~G~~GL~~~~--~~~~~l~~~--~----v~~~~~~gGs--~LgssR~~-----------------~~~~~ 79 (197)
..|.+|+--++|..-+++.. -.++++... | +....+.++. ++|-.... .+.++
T Consensus 49 ~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~ 128 (196)
T 2q5c_A 49 QDEVDAIISRGATSDYIKKSVSIPSISIKVTRFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSE 128 (196)
T ss_dssp TTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSG
T ss_pred cCCCeEEEECChHHHHHHHhCCCCEEEEcCCHhHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEEeCCH
Confidence 57788998888888888762 234555432 1 2222333332 22221111 12356
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcHHHH
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSLTGA 109 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~~~a 109 (197)
++.+.+++.+++.+++. ++||.-+.+.|
T Consensus 129 ~e~~~~i~~l~~~G~~v--vVG~~~~~~~A 156 (196)
T 2q5c_A 129 DEITTLISKVKTENIKI--VVSGKTVTDEA 156 (196)
T ss_dssp GGHHHHHHHHHHTTCCE--EEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeE--EECCHHHHHHH
Confidence 78888999999999996 67766554444
No 149
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=30.83 E-value=52 Score=26.11 Aligned_cols=42 Identities=10% Similarity=-0.145 Sum_probs=31.5
Q ss_pred EEEeCCCChhhH----h------HHHHHHHHHHHHcCCEEEEEcCcchhhcc
Q psy5987 3 AQVNKKSSSTGM----N------AAVRACVRMGIYLGCKVFFIKEGYQGMVD 44 (197)
Q Consensus 3 aIl~sGG~apG~----N------a~i~~~v~~~~~~g~~v~g~~~G~~GL~~ 44 (197)
||+.+|||.... + .....+++.+...+.-|+||--|+.=|..
T Consensus 48 ~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~ 99 (236)
T 3l7n_A 48 MLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGV 99 (236)
T ss_dssp EEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHHHHH
T ss_pred EEEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCEEEEchHHHHHHH
Confidence 789999987531 1 33567788877889999999999876553
No 150
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=30.16 E-value=1.9e+02 Score=22.33 Aligned_cols=85 Identities=13% Similarity=0.042 Sum_probs=47.7
Q ss_pred EEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhHH
Q psy5987 3 AQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAGR 82 (197)
Q Consensus 3 aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~ 82 (197)
.+||.|+-..|+= +++++.+...|++|+.+..- +-..+.+..+....|.... ..-+..+++..
T Consensus 17 vlITGa~~~~giG---~~ia~~l~~~G~~V~~~~r~------------~~~~~~~~~~~~~~~~~~~--~~~Dv~~~~~v 79 (271)
T 3ek2_A 17 ILLTGLLSNRSIA---YGIAKACKREGAELAFTYVG------------DRFKDRITEFAAEFGSELV--FPCDVADDAQI 79 (271)
T ss_dssp EEECCCCSTTSHH---HHHHHHHHHTTCEEEEEESS------------GGGHHHHHHHHHHTTCCCE--EECCTTCHHHH
T ss_pred EEEeCCCCCCcHH---HHHHHHHHHcCCCEEEEecc------------hhhHHHHHHHHHHcCCcEE--EECCCCCHHHH
Confidence 3455443345665 44566666789998876321 0112234444444443211 11123456777
Q ss_pred HHHHHHHHHh--CCcEEEEecCCC
Q psy5987 83 LKAAKNLIDR--GITNLVVIGGDG 104 (197)
Q Consensus 83 ~~~~~~l~~~--~I~~LiviGG~g 104 (197)
+++++.+.+. +||.||-.-|..
T Consensus 80 ~~~~~~~~~~~g~id~lv~nAg~~ 103 (271)
T 3ek2_A 80 DALFASLKTHWDSLDGLVHSIGFA 103 (271)
T ss_dssp HHHHHHHHHHCSCEEEEEECCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCccC
Confidence 8887777665 899999988754
No 151
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=30.13 E-value=47 Score=23.25 Aligned_cols=20 Identities=15% Similarity=-0.066 Sum_probs=15.6
Q ss_pred hhcCCceEEEeeeecccCCC
Q psy5987 135 EKYCHLHIAGLVGSIDNDFC 154 (197)
Q Consensus 135 ~~~~~i~vvgiPkTIDNDi~ 154 (197)
+.....-|||+|+++|+...
T Consensus 49 e~~v~~iVvGlP~~mdGt~~ 68 (98)
T 1iv0_A 49 REGLGKLVVGLPLRTDLKES 68 (98)
T ss_dssp HHTCCEEEEECCCCCCSSSC
T ss_pred HcCCCEEEEeeccCCCCCcC
Confidence 34567889999999988654
No 152
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=30.10 E-value=35 Score=26.73 Aligned_cols=42 Identities=17% Similarity=0.037 Sum_probs=30.8
Q ss_pred EEEeCCCChhhHhH-----HHHHHHHHHHHcCCEEEEEcCcchhhcc
Q psy5987 3 AQVNKKSSSTGMNA-----AVRACVRMGIYLGCKVFFIKEGYQGMVD 44 (197)
Q Consensus 3 aIl~sGG~apG~Na-----~i~~~v~~~~~~g~~v~g~~~G~~GL~~ 44 (197)
||+.+||+...... ....+++.+...+.-|+||-.|+.=|..
T Consensus 63 glil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~ 109 (219)
T 1q7r_A 63 GLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAK 109 (219)
T ss_dssp EEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEE
T ss_pred EEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHHHHHHH
Confidence 78999998766532 2245666666788899999999986654
No 153
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=30.10 E-value=71 Score=26.47 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=47.8
Q ss_pred EECChhhhhhhhhhcCceecccCCCCccChhHHHHHHHHHHHhCCcEEEEec----CCCcHHHHHHHHHHhHH
Q psy5987 50 VEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIG----GDGSLTGANLFRQEWPE 118 (197)
Q Consensus 50 ~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I~~LiviG----G~gs~~~a~~l~~~~~~ 118 (197)
.+++.+++-.....++...-||.. ++.++.++.+.+.+.+-|.+++|. =.||++.|...+++++.
T Consensus 44 ~di~~~efy~~~~~~~~~p~TSqp----s~~~~~~~f~~l~~~g~d~ii~i~iSs~LSGTy~sA~~a~~~~~~ 112 (285)
T 3lup_A 44 QNLTLDQYYDKLAASKELPKTSQP----SLAELDDLLCQLEKEGYTHVLGLFIAAGISGFWQNIQFLIEEHPN 112 (285)
T ss_dssp TTBCHHHHHHHHHHCSSCCEECCC----CHHHHHHHHHHHHHTTCCEEEECCSCGGGCTHHHHHTTHHHHCTT
T ss_pred CCCCHHHHHHHHHhCCCCceeCCC----CHHHHHHHHHHHHHcCCCeEEEEeCCCchhHHHHHHHHHHHhCCC
Confidence 456777666666666665556553 357888999999888888888764 57899999988887764
No 154
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=30.09 E-value=26 Score=26.39 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
+.+.+++.|++.+++.++++||-.-.+.
T Consensus 81 ~l~~~l~~l~~~~~~~i~v~GG~~l~~~ 108 (168)
T 1cz3_A 81 SPADVVKFLEGKGYERVAVIGGKTVFTE 108 (168)
T ss_dssp CHHHHHHHHHHTTCSEEEEEECHHHHHH
T ss_pred CHHHHHHHHHhCCCCEEEEECCHHHHHH
Confidence 5678888999999999999999754443
No 155
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=29.96 E-value=1e+02 Score=22.85 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHhCCcEEEEec
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIG 101 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviG 101 (197)
...+++.+.+++++++.+ |+|
T Consensus 40 ~~~~~l~~li~e~~v~~i-VvG 60 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEI-IVG 60 (138)
T ss_dssp ECHHHHHHHHHHHCCSEE-EEE
T ss_pred hHHHHHHHHHHHcCCCEE-EEe
Confidence 457889999999999965 556
No 156
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=29.93 E-value=1.5e+02 Score=26.37 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=25.6
Q ss_pred ChhHHHHHHHHHHHh---CCcEEEEecCCCcHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDR---GITNLVVIGGDGSLTGANL 111 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~---~I~~LiviGG~gs~~~a~~ 111 (197)
+++++.++++.++++ +.|++||.=|.+||.-.+.
T Consensus 149 tp~~w~~La~~I~~~~~~~~DG~VItHGTDTMeeTA~ 185 (435)
T 2d6f_A 149 KPEYWVETARAVYGEIKDGADGVVVAHGTDTMHYTSA 185 (435)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEEECCTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEEcCcchHHHHHH
Confidence 466666666666555 8999999999999976443
No 157
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=29.29 E-value=2e+02 Score=22.34 Aligned_cols=65 Identities=15% Similarity=0.273 Sum_probs=39.9
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
||++...-..|-...++.++.+.+...|+++.-+ ..+.. +++.
T Consensus 7 Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~---------------------------------~~~~~----~~~~ 49 (303)
T 3d02_A 7 VVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQV---------------------------------GPSST----DAPQ 49 (303)
T ss_dssp EEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEE---------------------------------CCSSS----CHHH
T ss_pred EEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEE---------------------------------CCCCC----CHHH
Confidence 5666655555666677777777776666544311 00111 2234
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGD 103 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~ 103 (197)
..+..+.|...++|++|+.+.+
T Consensus 50 ~~~~~~~l~~~~vdgiii~~~~ 71 (303)
T 3d02_A 50 QVKIIEDLIARKVDAITIVPND 71 (303)
T ss_dssp HHHHHHHHHHTTCSEEEECCSC
T ss_pred HHHHHHHHHHcCCCEEEEecCC
Confidence 4556777888899999988764
No 158
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=29.24 E-value=84 Score=27.19 Aligned_cols=52 Identities=17% Similarity=0.083 Sum_probs=29.6
Q ss_pred HHHHHHhCCcEEE-EecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEe
Q psy5987 86 AKNLIDRGITNLV-VIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGL 145 (197)
Q Consensus 86 ~~~l~~~~I~~Li-viGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgi 145 (197)
.+.+..++.|.++ .+|+|+..... =.++|.+-|++++ +..++++++.+|+.+
T Consensus 237 ~~~l~~~~pdlVvI~lGtND~~~~~--~~~~~~~~l~~li------~~ir~~~P~a~Illv 289 (385)
T 3skv_A 237 ARLIRDLPADLISLRVGTSNFMDGD--GFVDFPANLVGFV------QIIRERHPLTPIVLG 289 (385)
T ss_dssp HHHHHHSCCSEEEEEESHHHHTTTC--CTTTHHHHHHHHH------HHHHTTCSSSCEEEE
T ss_pred HHHHhccCCCEEEEEeeccCCCCCC--CHHHHHHHHHHHH------HHHHHHCCCCcEEEE
Confidence 3445667888764 47778765421 0123333445555 355677777777665
No 159
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=29.24 E-value=59 Score=26.17 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=31.6
Q ss_pred EEEeCCCCh------------------hhHhHHHHHHHHHHHHcCCEEEEEcCcchhhcc
Q psy5987 3 AQVNKKSSS------------------TGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVD 44 (197)
Q Consensus 3 aIl~sGG~a------------------pG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~ 44 (197)
||+.+||+- |-.-.....+++.+...+.-|+||-.|..=|..
T Consensus 64 Glil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Qll~~ 123 (254)
T 3fij_A 64 GLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNV 123 (254)
T ss_dssp EEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHH
T ss_pred EEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 788999953 222244667888888889999999999986653
No 160
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=29.03 E-value=20 Score=27.29 Aligned_cols=42 Identities=10% Similarity=-0.050 Sum_probs=30.0
Q ss_pred EEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhcc
Q psy5987 3 AQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVD 44 (197)
Q Consensus 3 aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~ 44 (197)
||+.+||+.|.-......+++.+...+.-++|+-.|..=|..
T Consensus 46 glil~Gg~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~ 87 (189)
T 1wl8_A 46 GIIFSGGPSLENTGNCEKVLEHYDEFNVPILGICLGHQLIAK 87 (189)
T ss_dssp EEEECCCSCTTCCTTHHHHHHTGGGTCSCEEEETHHHHHHHH
T ss_pred EEEECCCCChhhhhhHHHHHHHHhhCCCeEEEEcHHHHHHHH
Confidence 788999986643333355555554677899999999887764
No 161
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=28.33 E-value=73 Score=26.87 Aligned_cols=95 Identities=11% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCCccChhHHHHHHHHHHHhCCcEEEEec--CCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeecc
Q psy5987 73 CSDFREKAGRLKAAKNLIDRGITNLVVIG--GDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSID 150 (197)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~~I~~LiviG--G~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTID 150 (197)
++.+.+.+.+.+.++.|++.+|+.=|+.| .-.|.+.+..++ .++=+.||..+-
T Consensus 182 TQ~ffD~~~~~~f~~~~r~~Gi~vPIi~GImPi~s~~~~~~~~-------------------------~~~Gv~iP~~l~ 236 (304)
T 3fst_A 182 TQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKLA-------------------------DMTNVRIPAWMA 236 (304)
T ss_dssp ECCCSCHHHHHHHHHHHHHTTCCSCEECEECCCSCHHHHHHHH-------------------------HHHTCCCCHHHH
T ss_pred eCccCCHHHHHHHHHHHHhcCCCCcEEEEecccCCHHHHHHHH-------------------------HcCCCcCCHHHH
Q ss_pred cCCCCCCCCCC--chhHHHHHHHHHHHHHHhhccCCcEEEEEecCCC
Q psy5987 151 NDFCGTDMTIG--TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRL 195 (197)
Q Consensus 151 NDi~g~d~s~G--fdTA~~~~~~~i~~l~~~a~S~~rv~ivE~mGr~ 195 (197)
.-+...+.-.. ..-.++.+++.|..|.. ...+.++|. +|+|.
T Consensus 237 ~~l~~~~dd~~~~~~~Gi~~a~e~~~~L~~--~gv~GiH~y-t~n~~ 280 (304)
T 3fst_A 237 QMFDGLDDDAETRKLVGANIAMDMVKILSR--EGVKDFHFY-TLNRA 280 (304)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEE-CTTCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEC-CCCCH
No 162
>1esc_A Esterase; 2.10A {Streptomyces scabiei} SCOP: c.23.10.1 PDB: 1esd_A 1ese_A
Probab=28.30 E-value=2e+02 Score=23.23 Aligned_cols=24 Identities=13% Similarity=-0.132 Sum_probs=13.5
Q ss_pred hHHHHHHHHhcCCCcHHHHhhcCCceEEEe
Q psy5987 116 WPELLDQLLKDGSITKDQREKYCHLHIAGL 145 (197)
Q Consensus 116 ~~~~l~~l~~~~~~~~~~~~~~~~i~vvgi 145 (197)
|.+-|++++ +..+++.++.+|+.+
T Consensus 161 ~~~~l~~il------~~ir~~~p~a~I~lv 184 (306)
T 1esc_A 161 VGAELEELL------DRIGYFAPDAKRVLV 184 (306)
T ss_dssp HHHHHHHHH------HHHHHHSTTCEEEEE
T ss_pred HHHHHHHHH------HHHHHHCCCCEEEEe
Confidence 334455555 456666666666554
No 163
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=28.22 E-value=1.5e+02 Score=26.41 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=25.4
Q ss_pred ChhHHHHHHHHHHHh---CCcEEEEecCCCcHHHHHH
Q psy5987 78 EKAGRLKAAKNLIDR---GITNLVVIGGDGSLTGANL 111 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~---~I~~LiviGG~gs~~~a~~ 111 (197)
+++++.++++.++++ +.|++||.=|.+||.-.+.
T Consensus 150 tp~~w~~La~~I~~~~~~~~DG~VItHGTDTMeeTA~ 186 (438)
T 1zq1_A 150 KPKHWVKIAHEVAKALNSGDYGVVVAHGTDTMGYTAA 186 (438)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEEECCSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEecCchhHHHHHH
Confidence 456666666665555 8999999999999976443
No 164
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=27.83 E-value=1.6e+02 Score=22.16 Aligned_cols=59 Identities=17% Similarity=0.106 Sum_probs=39.4
Q ss_pred EEEeCCCChhh---HhHHHHHHHHHHHHcCCEEEEEcCcc-----hhhccCCCCeEECChhhhhhhhhh
Q psy5987 3 AQVNKKSSSTG---MNAAVRACVRMGIYLGCKVFFIKEGY-----QGMVDGGDNIVEANWSSVSSIIHK 63 (197)
Q Consensus 3 aIl~sGG~apG---~Na~i~~~v~~~~~~g~~v~g~~~G~-----~GL~~~~~~~~~l~~~~v~~~~~~ 63 (197)
+|+..||..+- -|..+...++.+..++..|.++-.|. .||+++ .-.--.|.....+...
T Consensus 89 ~livpGG~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~aGLL~G--r~~Tth~~~~~~l~~~ 155 (193)
T 1oi4_A 89 ALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRG--RKLTAVKPIIIDVKNA 155 (193)
T ss_dssp EEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTT--CEECCCGGGHHHHHHT
T ss_pred EEEECCCcCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCccCC--CEEEeChhHHHHHHHc
Confidence 56777884331 14556677777778888999999997 567777 5444456655555544
No 165
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=27.69 E-value=1.1e+02 Score=25.14 Aligned_cols=93 Identities=4% Similarity=0.010 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHhCCcEEEEecC---CC--cHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEE----eee---
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGG---DG--SLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAG----LVG--- 147 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG---~g--s~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvg----iPk--- 147 (197)
+...++++-|.+++|..|-+..= |- +-.....|-+-+.+.|++.+ ++..+.+..++++| +|.
T Consensus 46 ~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~~~~------~~l~~~~vrl~~iG~~~~lp~~~~ 119 (245)
T 2d2r_A 46 KTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLKDER------STYLDNNIRFRAIGDLEGFSKELR 119 (245)
T ss_dssp HHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHHHHHHH------HHHHHTTCEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHHHHH------HHHHHcCeEEEEecChhhCCHHHH
Confidence 45778899999999999987762 11 00011222222222233322 23345566777777 353
Q ss_pred ---------ecccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy5987 148 ---------SIDNDFCGTDMTIGTDSALHRIIEAIDAIVST 179 (197)
Q Consensus 148 ---------TIDNDi~g~d~s~GfdTA~~~~~~~i~~l~~~ 179 (197)
|-+|+=.-.-.+++|+ .-..++++++.+..+
T Consensus 120 ~~i~~a~~~T~~n~~l~lnia~~Yg-gR~EIv~A~r~i~~~ 159 (245)
T 2d2r_A 120 DTILQLENDTRHFKDFTQVLALNYG-SKNELSRAFKSLLES 159 (245)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCC-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCceEEEEEecCC-CHHHHHHHHHHHHHH
Confidence 5566544444677776 667777777777543
No 166
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=27.25 E-value=1.4e+02 Score=24.10 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=44.3
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
|||++.- .-|.++++-.|+.+.+...|+. ++ .+ +++... + .. .+...
T Consensus 11 igi~q~~-~hp~ld~~~~G~~~~L~~~G~~------------~g-~n-v~~~~~------~--------a~----gd~~~ 57 (302)
T 3lkv_A 11 VAVSQIV-EHPALDATRQGLLDGLKAKGYE------------EG-KN-LEFDYK------T--------AQ----GNPAI 57 (302)
T ss_dssp EEEEESC-CCHHHHHHHHHHHHHHHHTTCC------------BT-TT-EEEEEE------E--------CT----TCHHH
T ss_pred EEEEEee-cChhHHHHHHHHHHHHHhhCcc------------cC-Cc-EEEEEE------e--------CC----CCHHH
Confidence 6888874 5699999999999988777632 22 11 112111 0 11 12456
Q ss_pred HHHHHHHHHHhCCcEEEEec
Q psy5987 82 RLKAAKNLIDRGITNLVVIG 101 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviG 101 (197)
...++++|...+.|.+|.+|
T Consensus 58 ~~~~~~~l~~~~~DlIiai~ 77 (302)
T 3lkv_A 58 AVQIARQFVGENPDVLVGIA 77 (302)
T ss_dssp HHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHHhcCCcEEEEcC
Confidence 77889999999999888775
No 167
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum}
Probab=27.22 E-value=1.7e+02 Score=22.39 Aligned_cols=83 Identities=19% Similarity=0.128 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHcCCEEEEEcCcchh----hccCCCCeEECChhhhhhhhhhcCc-eecccCCCCccChhHHHHHHHHH
Q psy5987 15 NAAVRACVRMGIYLGCKVFFIKEGYQG----MVDGGDNIVEANWSSVSSIIHKGGT-VIGSARCSDFREKAGRLKAAKNL 89 (197)
Q Consensus 15 Na~i~~~v~~~~~~g~~v~g~~~G~~G----L~~~~~~~~~l~~~~v~~~~~~gGs-~LgssR~~~~~~~~~~~~~~~~l 89 (197)
=..+..+++.++..|..|+.+.+-..+ |..+. . .++-+..+...++- ++-=.++..|.. ....+.|
T Consensus 38 i~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~g~-~----g~~i~~~l~~~~~~~vi~K~~~saF~~----t~L~~~L 108 (198)
T 3mcw_A 38 EQACAGLLQAWRARGLPLIHIRHDSVEPNSTYRPGQ-P----GHAFKPEVEPRPGETVIAKQTNSAFIG----TGLEALL 108 (198)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECCCCTTCTTCTTS-G----GGSBCGGGCCCTTCEEEEESSSSTTTT----SSHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEecCCCCCCCCCcC-C----ccccCcccCCCCCCEEEEcCccCcccc----chHHHHH
Confidence 345567777778889988888765543 22220 0 01111222222333 232223333321 2355667
Q ss_pred HHhCCcEEEEecCCCcH
Q psy5987 90 IDRGITNLVVIGGDGSL 106 (197)
Q Consensus 90 ~~~~I~~LiviGG~gs~ 106 (197)
++++++.|++.|=.-..
T Consensus 109 ~~~gi~~lvi~G~~T~~ 125 (198)
T 3mcw_A 109 RANGWLELVVAGVSTSN 125 (198)
T ss_dssp HHHTCCEEEEEEECTTT
T ss_pred HcCCCCeEEEEEcCcCh
Confidence 88999999999877554
No 168
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=27.21 E-value=36 Score=22.17 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=16.2
Q ss_pred CccChhHHHHHHHHHHHhCCcEEEE
Q psy5987 75 DFREKAGRLKAAKNLIDRGITNLVV 99 (197)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~I~~Liv 99 (197)
|+.+.++.+++.+.|++.+++++|+
T Consensus 52 pf~~~~~A~~~~~~L~~~g~~~~iv 76 (79)
T 1x60_A 52 AFSSKDNADTLAARAKNAGFDAIVI 76 (79)
T ss_dssp EESSHHHHHHHHHHHHHHTSCCEEE
T ss_pred CcCCHHHHHHHHHHHHHcCCceEEE
Confidence 4445566667777777777776654
No 169
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=26.87 E-value=1e+02 Score=23.59 Aligned_cols=77 Identities=13% Similarity=-0.018 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHc----CCEEEEEcCcchhhccCCCCeEECChhhhhhh----hhhcCceecccCCCCccChhHHHHHHHH
Q psy5987 17 AVRACVRMGIYL----GCKVFFIKEGYQGMVDGGDNIVEANWSSVSSI----IHKGGTVIGSARCSDFREKAGRLKAAKN 88 (197)
Q Consensus 17 ~i~~~v~~~~~~----g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~----~~~gGs~LgssR~~~~~~~~~~~~~~~~ 88 (197)
..+.+++++..+ |++-+++..|-.+... ..+...++ ...+|.-+-.........+..++.+.+.
T Consensus 110 ~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~--------~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (276)
T 3ksm_A 110 AGQLAARALLATLDLSKERNIALLRLRAGNAS--------TDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRL 181 (276)
T ss_dssp HHHHHHHHHHHHSCTTSCEEEEECBCCTTCHH--------HHHHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcCCCceEEEEEcCCCchh--------HHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHH
Confidence 345667777777 8888888776432111 11112222 2233432211111112223445666677
Q ss_pred HHHh-CCcEEEEec
Q psy5987 89 LIDR-GITNLVVIG 101 (197)
Q Consensus 89 l~~~-~I~~LiviG 101 (197)
|+++ +++++++..
T Consensus 182 l~~~~~~~ai~~~~ 195 (276)
T 3ksm_A 182 LKETPTIDGLFTPN 195 (276)
T ss_dssp HHHCSCCCEEECCS
T ss_pred HHhCCCceEEEECC
Confidence 7776 788877653
No 170
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=26.77 E-value=2.4e+02 Score=22.33 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHhCCcEEEEec
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIG 101 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviG 101 (197)
++...+.++.|.+.++|++|++|
T Consensus 55 ~~~~~~~~~~l~~~~vDgII~~~ 77 (302)
T 2qh8_A 55 PAIAVQIARQFVGENPDVLVGIA 77 (302)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEES
T ss_pred HHHHHHHHHHHHhCCCCEEEECC
Confidence 34456778889999999999886
No 171
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=26.66 E-value=74 Score=23.20 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeee
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVG 147 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPk 147 (197)
.+.+.+..++.++| |||+|-.|.-.-...+ + |++++...++ .+++|..||.
T Consensus 108 ~~~I~~~a~~~~~D-LIV~G~~g~~~~~~~~---l----------GSva~~vl~~-a~~PVlvV~~ 158 (163)
T 1tq8_A 108 VDALVNLADEEKAD-LLVVGNVGLSTIAGRL---L----------GSVPANVSRR-AKVDVLIVHT 158 (163)
T ss_dssp HHHHHHHHHHTTCS-EEEEECCCCCSHHHHH---T----------BBHHHHHHHH-TTCEEEEECC
T ss_pred HHHHHHHHHhcCCC-EEEECCCCCCccccee---e----------ccHHHHHHHh-CCCCEEEEeC
Confidence 56778888889999 7788866543221111 1 3334444433 4688888884
No 172
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=26.04 E-value=72 Score=22.35 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeee
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGS 148 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkT 148 (197)
.+.+.+..++++.| |||+|-.|.-.-. .+ + |++++...++ .+++|..||..
T Consensus 98 ~~~I~~~a~~~~~d-liV~G~~~~~~~~-~~---~----------Gs~~~~vl~~-~~~pVlvv~~~ 148 (150)
T 3tnj_A 98 REEIIRIAEQENVD-LIVVGSHGRHGLA-LL---L----------GSTANSVLHY-AKCDVLAVRLR 148 (150)
T ss_dssp HHHHHHHHHHTTCS-EEEEEEC------------C----------CCHHHHHHHH-CSSEEEEEECC
T ss_pred HHHHHHHHHHcCCC-EEEEecCCCCCcC-eE---e----------cchHHHHHHh-CCCCEEEEeCC
Confidence 46788888889999 6778865432111 11 1 3333333333 46889888854
No 173
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=25.71 E-value=2.5e+02 Score=22.17 Aligned_cols=86 Identities=10% Similarity=-0.027 Sum_probs=49.6
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
+++||.|.-..|+- +++++.+...|++|+..-.. . ..+.+..+...++....- . -+..+++.
T Consensus 28 ~vlVTGasg~~GIG---~~ia~~l~~~G~~V~~~~r~---------~----~~~~~~~l~~~~~~~~~~-~-~Dl~~~~~ 89 (280)
T 3nrc_A 28 KILITGLLSNKSIA---YGIAKAMHREGAELAFTYVG---------Q----FKDRVEKLCAEFNPAAVL-P-CDVISDQE 89 (280)
T ss_dssp EEEECCCCSTTCHH---HHHHHHHHHTTCEEEEEECT---------T----CHHHHHHHHGGGCCSEEE-E-CCTTCHHH
T ss_pred EEEEECCCCCCCHH---HHHHHHHHHcCCEEEEeeCc---------h----HHHHHHHHHHhcCCceEE-E-eecCCHHH
Confidence 45555544345665 44566666789998876221 1 223344444444432111 1 22345677
Q ss_pred HHHHHHHHHHh--CCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDR--GITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~--~I~~LiviGG~gs 105 (197)
.+++++.+.+. .||.||-.-|...
T Consensus 90 v~~~~~~~~~~~g~id~li~nAg~~~ 115 (280)
T 3nrc_A 90 IKDLFVELGKVWDGLDAIVHSIAFAP 115 (280)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCccCC
Confidence 78877777654 7999999988643
No 174
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=25.58 E-value=2.5e+02 Score=22.29 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHH--hCCcEEEEecC
Q psy5987 79 KAGRLKAAKNLID--RGITNLVVIGG 102 (197)
Q Consensus 79 ~~~~~~~~~~l~~--~~I~~LiviGG 102 (197)
...++++++.+++ .+.|.+++.|-
T Consensus 50 ~~~l~~~l~~i~~~~~~~d~vi~~GD 75 (330)
T 3ib7_A 50 DDRLGELLEQLNQSGLRPDAIVFTGD 75 (330)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEECSC
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 4567888888887 78886666554
No 175
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=25.54 E-value=1.8e+02 Score=23.80 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHhCCcEEEEecC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGG 102 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG 102 (197)
..++++++.+++.++|.+++.|-
T Consensus 48 ~~l~~lv~~~~~~~~D~vliaGD 70 (336)
T 2q8u_A 48 KALDKVVEEAEKREVDLILLTGD 70 (336)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESC
T ss_pred HHHHHHHHHHHHhCCCEEEECCc
Confidence 34677888888899995555444
No 176
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=25.46 E-value=3.1e+02 Score=23.17 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEee
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLV 146 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiP 146 (197)
++.++.++.|.+.+.|.+|.. |..-..... +..+++++++++.+-
T Consensus 73 ~d~~~~l~~l~~~g~d~Ii~~-g~~~~~~~~---------------------~vA~~~Pdv~fv~id 117 (356)
T 3s99_A 73 ADAERSIKRIARAGNKLIFTT-SFGYMDPTV---------------------KVAKKFPDVKFEHAT 117 (356)
T ss_dssp HHHHHHHHHHHHTTCSEEEEC-SGGGHHHHH---------------------HHHTTCTTSEEEEES
T ss_pred HHHHHHHHHHHHCCCCEEEEC-CHHHHHHHH---------------------HHHHHCCCCEEEEEe
Confidence 467888999999999955554 443333222 234456788888763
No 177
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=25.35 E-value=79 Score=24.64 Aligned_cols=43 Identities=12% Similarity=-0.018 Sum_probs=31.1
Q ss_pred EEEeCCCChhhHh-------HHHHHHHHHHHHc-CCEEEEEcCcchhhccC
Q psy5987 3 AQVNKKSSSTGMN-------AAVRACVRMGIYL-GCKVFFIKEGYQGMVDG 45 (197)
Q Consensus 3 aIl~sGG~apG~N-------a~i~~~v~~~~~~-g~~v~g~~~G~~GL~~~ 45 (197)
||+..||+...+- .-+...++.+... |.-|+|+-.|+.=|...
T Consensus 46 glil~GG~~~~~~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~ 96 (227)
T 2abw_A 46 GLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN 96 (227)
T ss_dssp EEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred EEEECCCcHHHHHHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHH
Confidence 7889999855442 2345556666677 89999999999977653
No 178
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=24.94 E-value=3.1e+02 Score=23.10 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=27.1
Q ss_pred ChhHHHHHHHHHHHh--CCcEEEEecCCCcHHHHH
Q psy5987 78 EKAGRLKAAKNLIDR--GITNLVVIGGDGSLTGAN 110 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~--~I~~LiviGG~gs~~~a~ 110 (197)
+++++.++++.++++ +.|++||.=|.+||.-.+
T Consensus 56 t~~~w~~la~~I~~~~~~~dG~VItHGTDTmeeTA 90 (328)
T 1wls_A 56 QPSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSA 90 (328)
T ss_dssp CHHHHHHHHHHHHHHTTTCSEEEEECCGGGHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCeEEEEcCCchHHHHH
Confidence 567788887777776 899999999999997644
No 179
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Probab=24.59 E-value=2.5e+02 Score=21.84 Aligned_cols=86 Identities=15% Similarity=0.034 Sum_probs=45.3
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
+++||.|+...|+= +++++.+..+|++|+.+-. . . . ..+.+..+....|... .-.-+..+++.
T Consensus 11 ~vlVTGas~~~gIG---~~ia~~l~~~G~~V~~~~r-------~--~--~-~~~~~~~l~~~~~~~~--~~~~D~~~~~~ 73 (265)
T 1qsg_A 11 RILVTGVASKLSIA---YGIAQAMHREGAELAFTYQ-------N--D--K-LKGRVEEFAAQLGSDI--VLQCDVAEDAS 73 (265)
T ss_dssp EEEECCCCSTTSHH---HHHHHHHHHTTCEEEEEES-------S--T--T-THHHHHHHHHHTTCCC--EEECCTTCHHH
T ss_pred EEEEECCCCCCCHH---HHHHHHHHHCCCEEEEEcC-------c--H--H-HHHHHHHHHHhcCCcE--EEEccCCCHHH
Confidence 34555443235665 3455666677999887521 1 1 1 1122333333323210 01112335667
Q ss_pred HHHHHHHHHHh--CCcEEEEecCCC
Q psy5987 82 RLKAAKNLIDR--GITNLVVIGGDG 104 (197)
Q Consensus 82 ~~~~~~~l~~~--~I~~LiviGG~g 104 (197)
.+++++.+.+. ++|.||-.-|..
T Consensus 74 v~~~~~~~~~~~g~iD~lv~~Ag~~ 98 (265)
T 1qsg_A 74 IDTMFAELGKVWPKFDGFVHSIGFA 98 (265)
T ss_dssp HHHHHHHHHTTCSSEEEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 77777766554 799999988854
No 180
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=24.54 E-value=1.4e+02 Score=24.37 Aligned_cols=80 Identities=8% Similarity=-0.065 Sum_probs=41.8
Q ss_pred HhHHHHHHHHHHHHc-CCEEEEEcCcchhhccCCCCe-EECChhhhhhhhhhcCceecccCCCCccChhHHHHHHHHHHH
Q psy5987 14 MNAAVRACVRMGIYL-GCKVFFIKEGYQGMVDGGDNI-VEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLID 91 (197)
Q Consensus 14 ~Na~i~~~v~~~~~~-g~~v~g~~~G~~GL~~~~~~~-~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~ 91 (197)
-+.....+++++..+ |++=+++...- . .+ ......-.+.+...|+.+........ ...++...++.+++
T Consensus 126 ~~~~~~~~~~~l~~~~g~~~iaii~~~-----~--~~g~~~~~~~~~~l~~~G~~v~~~~~~~~--~~~d~~~~~~~l~~ 196 (392)
T 3lkb_A 126 YSEQVVALLEYIAREKKGAKVALVVHP-----S--PFGRAPVEDARKAARELGLQIVDVQEVGS--GNLDNTALLKRFEQ 196 (392)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEECS-----S--HHHHTTHHHHHHHHHHHTCEEEEEEECCT--TCCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEEeC-----C--chhhhHHHHHHHHHHHcCCeEEEEEeeCC--CCcCHHHHHHHHHh
Confidence 344566677787664 77545543211 1 11 11111112234556666665444332 12345566777788
Q ss_pred hCCcEEEEecC
Q psy5987 92 RGITNLVVIGG 102 (197)
Q Consensus 92 ~~I~~LiviGG 102 (197)
.+.|.+++.+.
T Consensus 197 ~~~dav~~~~~ 207 (392)
T 3lkb_A 197 AGVEYVVHQNV 207 (392)
T ss_dssp TTCCEEEEESC
T ss_pred cCCCEEEEecC
Confidence 88998877653
No 181
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=24.44 E-value=62 Score=26.74 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=22.3
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
+.+.+++.++.+.+.++++|++.|..|-..
T Consensus 18 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~ 47 (288)
T 2nuw_A 18 NVDALKTHAKNLLEKGIDAIFVNGTTGLGP 47 (288)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEETSTTTTGG
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChh
Confidence 455677778888888888888888777543
No 182
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=24.42 E-value=64 Score=26.91 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=25.1
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
+.+.+++.++.+.+.++++|++.|..|-..
T Consensus 35 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~ 64 (304)
T 3cpr_A 35 DIAAGREVAAYLVDKGLDSLVLAGTTGESP 64 (304)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChh
Confidence 566788899999999999999999877543
No 183
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=24.32 E-value=1.9e+02 Score=22.30 Aligned_cols=58 Identities=14% Similarity=0.049 Sum_probs=41.6
Q ss_pred EEEeCCCChhhH-----hHHHHHHHHHHHHcCCEEEEEcCcc-----hhhccCCCCeEECChhhhhhhhh
Q psy5987 3 AQVNKKSSSTGM-----NAAVRACVRMGIYLGCKVFFIKEGY-----QGMVDGGDNIVEANWSSVSSIIH 62 (197)
Q Consensus 3 aIl~sGG~apG~-----Na~i~~~v~~~~~~g~~v~g~~~G~-----~GL~~~~~~~~~l~~~~v~~~~~ 62 (197)
+|+..||..|.- |..+...++....++..|.++-.|- .||+++ .-.--.|.....+..
T Consensus 77 ~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~g--r~aTth~~~~~~l~~ 144 (209)
T 3er6_A 77 ILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKAGLLQQ--NKAVMHSYFAHLFGE 144 (209)
T ss_dssp EEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHTCCSS--CEECCCHHHHHHHHH
T ss_pred EEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHcCCCCC--CeeEECHHHHHHHHH
Confidence 466778876653 7788888888888899999999986 477777 544445655555543
No 184
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=24.20 E-value=66 Score=26.67 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=25.0
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
+.+.+++.++.+.+.++++|++.|..|-..
T Consensus 22 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~ 51 (294)
T 3b4u_A 22 DIDAMIAHARRCLSNGCDSVTLFGTTGEGC 51 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGG
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChh
Confidence 466788889999999999999999887654
No 185
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=24.15 E-value=1.4e+02 Score=26.60 Aligned_cols=19 Identities=21% Similarity=0.001 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHhCCcEEE
Q psy5987 80 AGRLKAAKNLIDRGITNLV 98 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~Li 98 (197)
+-.+++++.|+++++.+=+
T Consensus 279 ~~~~~a~~~l~~~gi~~~v 297 (425)
T 2h31_A 279 GHCEKIKKACGNFGIPCEL 297 (425)
T ss_dssp HHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHcCCceEE
Confidence 4466777777777777543
No 186
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=23.92 E-value=67 Score=26.50 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=23.2
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
+.+.+++.++.+.+.++++|++.|..|-..
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~ 48 (289)
T 2yxg_A 19 DFDGLEENINFLIENGVSGIVAVGTTGESP 48 (289)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGG
T ss_pred CHHHHHHHHHHHHHCCCCEEEECccccChh
Confidence 456677888888888888888888777554
No 187
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=23.88 E-value=2.8e+02 Score=22.25 Aligned_cols=35 Identities=6% Similarity=0.003 Sum_probs=29.4
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEc
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIK 36 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~ 36 (197)
||++...-..|-...++.++-+.+...|+++.-+.
T Consensus 67 Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 101 (333)
T 3jvd_A 67 VGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAE 101 (333)
T ss_dssp EEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 78888887788888999999999998999776654
No 188
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=23.85 E-value=65 Score=26.56 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=19.9
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
+.+.+++.++.+.+.++++|++.|..|-.
T Consensus 17 D~~~l~~lv~~li~~Gv~gl~v~GttGE~ 45 (286)
T 2r91_A 17 DPELFANHVKNITSKGVDVVFVAGTTGLG 45 (286)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEETSTTTTG
T ss_pred CHHHHHHHHHHHHHCCCCEEEECccccCh
Confidence 34556677777777777777777766654
No 189
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=23.79 E-value=52 Score=24.72 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=30.5
Q ss_pred HHHHHHHHHH-HhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhh-cCCceEEEeeee
Q psy5987 81 GRLKAAKNLI-DRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREK-YCHLHIAGLVGS 148 (197)
Q Consensus 81 ~~~~~~~~l~-~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~-~~~i~vvgiPkT 148 (197)
+...+++.++ ...+|.++++-||+-+..+. +..+++ +..+-+++.|+.
T Consensus 95 Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv--------------------~~lr~~~G~~V~v~g~~~~ 144 (165)
T 2qip_A 95 DVGITLDAIEIAPDVDRVILVSGDGDFSLLV--------------------ERIQQRYNKKVTVYGVPRL 144 (165)
T ss_dssp HHHHHHHHHHHGGGCSEEEEECCCGGGHHHH--------------------HHHHHHHCCEEEEEECGGG
T ss_pred cHHHHHHHHHhhccCCEEEEEECChhHHHHH--------------------HHHHHHcCcEEEEEeCCCc
Confidence 4444444432 25799999999999887643 234554 666666776653
No 190
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=23.64 E-value=2.7e+02 Score=21.82 Aligned_cols=86 Identities=14% Similarity=0.038 Sum_probs=47.1
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccCh-h
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREK-A 80 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~-~ 80 (197)
+++||.|+ .|+= +++++.+..+|++|+..-.--+.+ .+.+..+...++.-+-.-.. +..++ +
T Consensus 14 ~vlITGas--~GIG---~~~a~~L~~~G~~V~~~~r~~~~~-----------~~~~~~l~~~~~~~~~~~~~-Dl~~~~~ 76 (311)
T 3o26_A 14 CAVVTGGN--KGIG---FEICKQLSSNGIMVVLTCRDVTKG-----------HEAVEKLKNSNHENVVFHQL-DVTDPIA 76 (311)
T ss_dssp EEEESSCS--SHHH---HHHHHHHHHTTCEEEEEESCHHHH-----------HHHHHHHHTTTCCSEEEEEC-CTTSCHH
T ss_pred EEEEecCC--chHH---HHHHHHHHHCCCEEEEEeCCHHHH-----------HHHHHHHHhcCCCceEEEEc-cCCCcHH
Confidence 35555554 4544 345666667899988763222111 11233333444421111111 22344 6
Q ss_pred HHHHHHHHHHHh--CCcEEEEecCCC
Q psy5987 81 GRLKAAKNLIDR--GITNLVVIGGDG 104 (197)
Q Consensus 81 ~~~~~~~~l~~~--~I~~LiviGG~g 104 (197)
..+++++.+++. +||.||..-|..
T Consensus 77 ~v~~~~~~~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 77 TMSSLADFIKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCccc
Confidence 777888777765 899999998865
No 191
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=23.51 E-value=68 Score=26.51 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=24.3
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
+.+.+++.++.+.+.++++|++.|..|-..
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~ 49 (292)
T 2ojp_A 20 CRASLKKLIDYHVASGTSAIVSVGTTGESA 49 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGG
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchh
Confidence 456788888888889999999999877553
No 192
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=23.51 E-value=1.3e+02 Score=25.41 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=54.7
Q ss_pred ChhhHhHHHHHHHHHHHHcCCEEEEE-------cCcchhhc---cCCCCeEECChhhhhhhhhhcCceecc---------
Q psy5987 10 SSTGMNAAVRACVRMGIYLGCKVFFI-------KEGYQGMV---DGGDNIVEANWSSVSSIIHKGGTVIGS--------- 70 (197)
Q Consensus 10 ~apG~Na~i~~~v~~~~~~g~~v~g~-------~~G~~GL~---~~~~~~~~l~~~~v~~~~~~gGs~Lgs--------- 70 (197)
.||=.-.+ +..++.....|++++-+ ..|..|.. .+ .-+.--+.+++..+....-..+=|
T Consensus 95 TCP~V~Kv-h~~v~~~~~~Gy~iiiiG~~~HpEV~G~~g~~~~~~~-~~~vV~~~ed~~~l~~~~kv~~vsQTT~s~~~~ 172 (297)
T 3dnf_A 95 TCPYVKAV-HEAVCQLTREGYFVVLVGEKNHPEVIGTLGYLRACNG-KGIVVETLEDIGEALKHERVGIVAQTTQNEEFF 172 (297)
T ss_dssp CCHHHHHH-HHHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHTTC-CEEEESSGGGGGGGGGCSEEEEEECTTCCHHHH
T ss_pred CCcchHHH-HHHHHHHHhCCCEEEEEecCCCceEEeeccccccCCC-cEEEEcCHHHHHhcCCCCcEEEEEecCCcHHHH
Confidence 46665544 55555556788877776 34666666 33 123334455555543211101101
Q ss_pred --------cCCCCc---c----ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 71 --------ARCSDF---R----EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 71 --------sR~~~~---~----~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
.|++.+ . --.+++.+++.|-+ ..|.++++||-.|-.+ ++|.
T Consensus 173 ~~iv~~L~~r~p~~~~~~tIC~AT~~RQ~av~~la~-~~D~miVVGg~nSSNT-~rL~ 228 (297)
T 3dnf_A 173 KEVVGEIALWVKEVKVINTICNATSLRQESVKKLAP-EVDVMIIIGGKNSGNT-RRLY 228 (297)
T ss_dssp HHHHHHHHHHSSEEEEECCCCSHHHHHHHHHHHHGG-GSSEEEEESCTTCHHH-HHHH
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHh-hCCEEEEECCCCCchh-HHHH
Confidence 122111 0 12356666777665 5999999999998887 4454
No 193
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=23.48 E-value=53 Score=26.59 Aligned_cols=80 Identities=6% Similarity=-0.153 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHc-CCEEEEEcCcchhhccCCCCe-EECChhhhhhhhhhcCceecccCCCCccChhHHHHHHHHHHHh
Q psy5987 15 NAAVRACVRMGIYL-GCKVFFIKEGYQGMVDGGDNI-VEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDR 92 (197)
Q Consensus 15 Na~i~~~v~~~~~~-g~~v~g~~~G~~GL~~~~~~~-~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~ 92 (197)
+...+.+++++..+ |++=+++..+- . .+ ......-...+...|+.+........ ...++...++.+++.
T Consensus 122 ~~~~~~~~~~l~~~~g~~~iaii~~~-----~--~~~~~~~~~~~~~l~~~g~~v~~~~~~~~--~~~d~~~~~~~l~~~ 192 (356)
T 3ipc_A 122 DQQGGIAGKYLADHFKDAKVAIIHDK-----T--PYGQGLADETKKAANAAGVTEVMYEGVNV--GDKDFSALISKMKEA 192 (356)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECS-----S--HHHHHHHHHHHHHHHHTTCCCSEEEECCT--TCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCC-----C--hHHHHHHHHHHHHHHHcCCEEEEEEeeCC--CCCCHHHHHHHHHhc
Confidence 34556677776654 77444443321 1 11 00111112234455666544333322 123455667777778
Q ss_pred CCcEEEEecCC
Q psy5987 93 GITNLVVIGGD 103 (197)
Q Consensus 93 ~I~~LiviGG~ 103 (197)
+.|.+++.+-+
T Consensus 193 ~~d~v~~~~~~ 203 (356)
T 3ipc_A 193 GVSIIYWGGLH 203 (356)
T ss_dssp TCCEEEEESCH
T ss_pred CCCEEEEccCc
Confidence 88887766543
No 194
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=23.35 E-value=70 Score=26.73 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=25.4
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
+.+.+++.++.+.+.++++|++.|..|-...
T Consensus 34 D~~~l~~lv~~li~~Gv~gi~v~GttGE~~~ 64 (304)
T 3l21_A 34 DTATAARLANHLVDQGCDGLVVSGTTGESPT 64 (304)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGG
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccchhh
Confidence 4667888899999999999999998886543
No 195
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=23.25 E-value=71 Score=26.30 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCcEEEEecCCCc
Q psy5987 83 LKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 83 ~~~~~~l~~~~I~~LiviGG~gs 105 (197)
.++++.|.+.+.+.+++-.-..|
T Consensus 57 ~~~~~~L~~~g~~~IVIACNTa~ 79 (269)
T 3ist_A 57 WEMTNFLVDRGIKMLVIACNTAT 79 (269)
T ss_dssp HHHHHHHHHTTCSEEEECCHHHH
T ss_pred HHHHHHHHHCCCCEEEEeCCCcc
Confidence 45788999999998888765433
No 196
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=23.22 E-value=2.7e+02 Score=22.25 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=48.8
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccChhH
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAG 81 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~ 81 (197)
+++||.|+-..|+=. ++++.+...|++|+....--+ ..+.+..+....|...- -. -+..+++.
T Consensus 33 ~~lVTGasg~~GIG~---aia~~la~~G~~V~~~~r~~~------------~~~~~~~~~~~~~~~~~-~~-~Dv~d~~~ 95 (293)
T 3grk_A 33 RGLILGVANNRSIAW---GIAKAAREAGAELAFTYQGDA------------LKKRVEPLAEELGAFVA-GH-CDVADAAS 95 (293)
T ss_dssp EEEEECCCSSSSHHH---HHHHHHHHTTCEEEEEECSHH------------HHHHHHHHHHHHTCEEE-EE-CCTTCHHH
T ss_pred EEEEEcCCCCCcHHH---HHHHHHHHCCCEEEEEcCCHH------------HHHHHHHHHHhcCCceE-EE-CCCCCHHH
Confidence 466776654445553 455666677998876522100 11223333334343221 11 22345677
Q ss_pred HHHHHHHHHHh--CCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDR--GITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~--~I~~LiviGG~gs 105 (197)
.+++++.+.+. +||.||-.-|...
T Consensus 96 v~~~~~~~~~~~g~iD~lVnnAG~~~ 121 (293)
T 3grk_A 96 IDAVFETLEKKWGKLDFLVHAIGFSD 121 (293)
T ss_dssp HHHHHHHHHHHTSCCSEEEECCCCCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCccCC
Confidence 77877777665 8999999888653
No 197
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=23.17 E-value=71 Score=26.46 Aligned_cols=30 Identities=37% Similarity=0.414 Sum_probs=21.2
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
+.+.+++.++.+.+.++++|++.|..|-..
T Consensus 18 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~ 47 (293)
T 1w3i_A 18 DKEKLKIHAENLIRKGIDKLFVNGTTGLGP 47 (293)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGG
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChh
Confidence 445667777777777888888877766543
No 198
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=23.17 E-value=71 Score=26.62 Aligned_cols=31 Identities=35% Similarity=0.391 Sum_probs=24.8
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
+.+.+++.++.+.+.++++|++.|..|-...
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~ 61 (301)
T 1xky_A 31 DFAKTTKLVNYLIDNGTTAIVVGGTTGESPT 61 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGG
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh
Confidence 4567888888888899999999998775543
No 199
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=23.10 E-value=71 Score=26.63 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=24.7
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
+.+.+++.++.+.+.++++|++.|..|-..
T Consensus 30 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~ 59 (303)
T 2wkj_A 30 DKASLRRLVQFNIQQGIDGLYVGGSTGEAF 59 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGG
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccChh
Confidence 456788889999999999999999877554
No 200
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG, protein structure initiative, midwest center for STRU genomics; HET: GOL; 2.20A {Streptococcus thermophilus}
Probab=23.03 E-value=72 Score=22.25 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHhCCcEEEEecC
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGG 102 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG 102 (197)
+.++++.+.|+++++|++++-..
T Consensus 6 ~Rl~~lr~~m~~~~~da~li~~~ 28 (131)
T 3il0_A 6 RRLERFDAKLVQSGLDALLVTGQ 28 (131)
T ss_dssp GHHHHHHHHHHHHTCSEEEECSH
T ss_pred HHHHHHHHHHHHcCCCEEEEecc
Confidence 45788999999999999998663
No 201
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=22.79 E-value=68 Score=26.05 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
..++++.|.+.+.|.+++-....+......|+
T Consensus 54 ~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr 85 (267)
T 2gzm_A 54 TWEMTEHLLDLNIKMLVIACNTATAVVLEEMQ 85 (267)
T ss_dssp HHHHHHHHHTTTCSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEeCchhhHHHHHHHH
Confidence 45677888999999888766554432334443
No 202
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=22.78 E-value=73 Score=26.44 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=24.7
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
+.+.+++.++.+.+.++++|++.|..|-..
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~ 55 (297)
T 3flu_A 26 HYEQLRDLIDWHIENGTDGIVAVGTTGESA 55 (297)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGG
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCcc
Confidence 456788888889899999999999888553
No 203
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=22.65 E-value=92 Score=22.57 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEeeeec
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSI 149 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiPkTI 149 (197)
.+.+.+..+++++| |||+|-.|.-.-...+ + |++++...++ .+++|..||..-
T Consensus 113 ~~~I~~~a~~~~~D-LIVmG~~g~~~~~~~~---~----------Gsva~~vl~~-a~~pVlvv~~~~ 165 (175)
T 2gm3_A 113 KDVICQEVKRVRPD-FLVVGSRGLGRFQKVF---V----------GTVSAFCVKH-AECPVMTIKRNA 165 (175)
T ss_dssp HHHHHHHHHHHCCS-EEEEEECCCC---------------------CHHHHHHHH-CSSCEEEEECCG
T ss_pred HHHHHHHHHHhCCC-EEEEeCCCCChhhhhh---c----------CchHHHHHhC-CCCCEEEEcCCc
Confidence 56788888889999 7778865532211111 1 3333444433 468899898653
No 204
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=22.62 E-value=2.9e+02 Score=22.53 Aligned_cols=80 Identities=5% Similarity=-0.131 Sum_probs=43.1
Q ss_pred HhHHHHHHHHHHHHc-CCEEEEEcCcchhhccCCCCe-EECChhhhhhhhhhcCceecccCCCCccChhHHHHHHHH--H
Q psy5987 14 MNAAVRACVRMGIYL-GCKVFFIKEGYQGMVDGGDNI-VEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKN--L 89 (197)
Q Consensus 14 ~Na~i~~~v~~~~~~-g~~v~g~~~G~~GL~~~~~~~-~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~--l 89 (197)
-+.....+++++.+. |++=+++..+-. . .+ ..+...-.+.+...|+.+........ ...++...++. +
T Consensus 124 ~~~~~~~~~~~l~~~~g~~~iaii~~~~----~--~~g~~~~~~~~~~l~~~G~~v~~~~~~~~--~~~d~~~~~~~~~l 195 (391)
T 3eaf_A 124 YSTQACSGLAFLASEFGQGKLALAYDSK----V--AYSRSPIGAIKKAAPSLGLQVVGDYDLPL--RATEADAERIAREM 195 (391)
T ss_dssp HHHHHHHHHHHHHHHHCSEEEEEEECTT----C--HHHHTTHHHHHHHTGGGTEEEEEEEECCT--TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEecC----C--hhHHHHHHHHHHHHHHcCCceeeeeccCC--CCcCHHHHHHHHHH
Confidence 345566677777664 886666654310 0 11 00111112233455666655444432 23456677777 8
Q ss_pred HHhCCcEEEEec
Q psy5987 90 IDRGITNLVVIG 101 (197)
Q Consensus 90 ~~~~I~~LiviG 101 (197)
++.+.|.+++.+
T Consensus 196 ~~~~~dav~~~~ 207 (391)
T 3eaf_A 196 LAADPDYVWCGN 207 (391)
T ss_dssp HTTCCSEEEECS
T ss_pred HHcCCCEEEEec
Confidence 888999887654
No 205
>2ciw_A Chloroperoxidase; oxidoreductase, heme, iron, chloride, manganese, pyrrolidone carboxylic acid, glycoprotein, metal-binding; HET: NAG BMA MAN HEM; 1.15A {Caldariomyces fumago} SCOP: a.39.3.1 a.39.3.1 PDB: 1cpo_A* 2civ_A* 2cix_A* 2ciy_A* 2ciz_A* 2cj0_A* 2cj1_A* 2cj2_A* 2cpo_A* 2j18_A* 2j19_A* 2j5m_A*
Probab=22.40 E-value=29 Score=29.60 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=9.6
Q ss_pred CCCChhhHhHHH
Q psy5987 7 KKSSSTGMNAAV 18 (197)
Q Consensus 7 sGG~apG~Na~i 18 (197)
+-|||||+|+..
T Consensus 26 ~RgPCPgLNaLA 37 (299)
T 2ciw_A 26 SRAPCPALNALA 37 (299)
T ss_dssp CCCSCHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 458999999864
No 206
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=22.28 E-value=2.1e+02 Score=21.20 Aligned_cols=59 Identities=14% Similarity=0.051 Sum_probs=38.6
Q ss_pred EEEeCCCC-hh---hHhHHHHHHHHHHHHcCCEEEEEcCcc-----hhhccCCCCeEECChhhhhhhhhh
Q psy5987 3 AQVNKKSS-ST---GMNAAVRACVRMGIYLGCKVFFIKEGY-----QGMVDGGDNIVEANWSSVSSIIHK 63 (197)
Q Consensus 3 aIl~sGG~-ap---G~Na~i~~~v~~~~~~g~~v~g~~~G~-----~GL~~~~~~~~~l~~~~v~~~~~~ 63 (197)
+|+..||. .+ --|..+...++.+..++..|.++-.|- .||+++ .-.--.|.....+...
T Consensus 78 ~livpGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~g--r~~Tt~~~~~~~l~~~ 145 (190)
T 2vrn_A 78 GLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSETGIAQG--LKMTSWSSLKRELTLA 145 (190)
T ss_dssp EEEECCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHTTTTTT--CEECCCGGGHHHHHHT
T ss_pred EEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhCcccCC--cEEecCccHHHHHHHc
Confidence 56777885 33 126667788888888888999999997 567776 4444446544444444
No 207
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=22.26 E-value=1.6e+02 Score=23.65 Aligned_cols=80 Identities=10% Similarity=-0.035 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCe-EECChhhhhhhhhhcCceecccCCCCccChhHHHHHHHHHHHhCC
Q psy5987 16 AAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNI-VEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGI 94 (197)
Q Consensus 16 a~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~-~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I 94 (197)
.....+++++.+.|++=+++.. .+ ..+ ......-.+.+...|+.+........ ...++...++.+++.+.
T Consensus 125 ~~~~~~~~~l~~~g~~~ia~i~------~~-~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~--~~~d~~~~~~~l~~~~~ 195 (368)
T 4eyg_A 125 QSSIIIGDWAAKNGIKKVATLT------SD-YAPGNDALAFFKERFTAGGGEIVEEIKVPL--ANPDFAPFLQRMKDAKP 195 (368)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEE------ES-SHHHHHHHHHHHHHHHHTTCEEEEEEEECS--SSCCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEe------cC-chHhHHHHHHHHHHHHHcCCEEEEEEeCCC--CCCcHHHHHHHHHhcCC
Confidence 4556778888777885444432 11 011 00011112234556666665444332 12345667788888899
Q ss_pred cEEEEecCCC
Q psy5987 95 TNLVVIGGDG 104 (197)
Q Consensus 95 ~~LiviGG~g 104 (197)
|.+++.+.+.
T Consensus 196 d~v~~~~~~~ 205 (368)
T 4eyg_A 196 DAMFVFVPAG 205 (368)
T ss_dssp SEEEEECCTT
T ss_pred CEEEEeccch
Confidence 9998866554
No 208
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=22.21 E-value=2.7e+02 Score=21.46 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=46.6
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCeEECChhhhhhhhhh-cCceecccCCCCccChh
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK-GGTVIGSARCSDFREKA 80 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~-gGs~LgssR~~~~~~~~ 80 (197)
+++||.|+-..|+- +++++.+...|++|+.+...-.. ...+.+..+... ++... .-. -+..+++
T Consensus 22 ~vlITGas~~~giG---~~~a~~l~~~G~~v~~~~~~~~~----------~~~~~~~~l~~~~~~~~~-~~~-~Dl~~~~ 86 (267)
T 3gdg_A 22 VVVVTGASGPKGMG---IEAARGCAEMGAAVAITYASRAQ----------GAEENVKELEKTYGIKAK-AYK-CQVDSYE 86 (267)
T ss_dssp EEEETTCCSSSSHH---HHHHHHHHHTSCEEEECBSSSSS----------HHHHHHHHHHHHHCCCEE-CCB-CCTTCHH
T ss_pred EEEEECCCCCCChH---HHHHHHHHHCCCeEEEEeCCcch----------hHHHHHHHHHHhcCCcee-EEe-cCCCCHH
Confidence 34555443225655 45566666789988865322111 112223333332 33221 111 1234567
Q ss_pred HHHHHHHHHHHh--CCcEEEEecCCC
Q psy5987 81 GRLKAAKNLIDR--GITNLVVIGGDG 104 (197)
Q Consensus 81 ~~~~~~~~l~~~--~I~~LiviGG~g 104 (197)
..+++++.+.+. .||.||-.-|..
T Consensus 87 ~v~~~~~~~~~~~g~id~li~nAg~~ 112 (267)
T 3gdg_A 87 SCEKLVKDVVADFGQIDAFIANAGAT 112 (267)
T ss_dssp HHHHHHHHHHHHTSCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 777777776655 899999988754
No 209
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=22.10 E-value=2.9e+02 Score=21.66 Aligned_cols=63 Identities=13% Similarity=0.053 Sum_probs=39.6
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCC---EEEEEcCcchhhccCCCCeEECChhhhhhhhhhcCceecccCCCCccC
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGC---KVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFRE 78 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~---~v~g~~~G~~GL~~~~~~~~~l~~~~v~~~~~~gGs~LgssR~~~~~~ 78 (197)
|||+. .-.-|-...++.++-+.+..+|+ ++.-+ +..+.. +
T Consensus 5 Igvi~-~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~--------------------------------~~~~~~----~ 47 (295)
T 3lft_A 5 IGVLQ-FVSHPSLDLIYKGIQDGLAEEGYKDDQVKID--------------------------------FMNSEG----D 47 (295)
T ss_dssp EEEEE-CSCCHHHHHHHHHHHHHHHHTTCCGGGEEEE--------------------------------EEECTT----C
T ss_pred EEEEE-ccCChhHHHHHHHHHHHHHHcCCCCCceEEE--------------------------------EecCCC----C
Confidence 67663 34557777788888877777665 32110 011111 2
Q ss_pred hhHHHHHHHHHHHhCCcEEEEec
Q psy5987 79 KAGRLKAAKNLIDRGITNLVVIG 101 (197)
Q Consensus 79 ~~~~~~~~~~l~~~~I~~LiviG 101 (197)
++...+..+.|.+.++|++|++|
T Consensus 48 ~~~~~~~~~~l~~~~vDgII~~~ 70 (295)
T 3lft_A 48 QSKVATMSKQLVANGNDLVVGIA 70 (295)
T ss_dssp HHHHHHHHHHHTTSSCSEEEEES
T ss_pred HHHHHHHHHHHHhcCCCEEEECC
Confidence 34456778889999999999986
No 210
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=22.07 E-value=76 Score=26.21 Aligned_cols=29 Identities=21% Similarity=0.325 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
+.+.+++.++.+.+.++++|++.|..|-.
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~ 48 (291)
T 3tak_A 20 DWKSLEKLVEWHIEQGTNSIVAVGTTGEA 48 (291)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTG
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcccccc
Confidence 45677888888888999999999988854
No 211
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=22.01 E-value=1.8e+02 Score=20.91 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=40.4
Q ss_pred HHcCCEEEEEcCcchhhccCCCCeEECChhhhh-hhhhhcCceecccCCCCccChhHHHHHHHHHHHhCC-cEEEEecCC
Q psy5987 26 IYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVS-SIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGI-TNLVVIGGD 103 (197)
Q Consensus 26 ~~~g~~v~g~~~G~~GL~~~~~~~~~l~~~~v~-~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I-~~LiviGG~ 103 (197)
...|++|+-. + ...+.+++- ......--+++.|-... .+.+..++.++.|++.+. +..+++||.
T Consensus 28 ~~~G~~Vi~l---------G----~~~p~e~~v~~a~~~~~d~v~lS~~~~-~~~~~~~~~i~~l~~~g~~~i~v~vGG~ 93 (137)
T 1ccw_A 28 TNAGFNVVNI---------G----VLSPQELFIKAAIETKADAILVSSLYG-QGEIDCKGLRQKCDEAGLEGILLYVGGN 93 (137)
T ss_dssp HHTTCEEEEE---------E----EEECHHHHHHHHHHHTCSEEEEEECSS-THHHHHTTHHHHHHHTTCTTCEEEEEES
T ss_pred HHCCCEEEEC---------C----CCCCHHHHHHHHHhcCCCEEEEEecCc-CcHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 4578888732 1 233444443 33444444666555442 234567888999999888 688999997
Q ss_pred C
Q psy5987 104 G 104 (197)
Q Consensus 104 g 104 (197)
.
T Consensus 94 ~ 94 (137)
T 1ccw_A 94 I 94 (137)
T ss_dssp C
T ss_pred C
Confidence 5
No 212
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=21.95 E-value=72 Score=26.38 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
..++++.|.+.++|.+++-....|......|+
T Consensus 75 ~~~~~~~L~~~g~d~IVIACNTas~~~l~~lr 106 (290)
T 2vvt_A 75 TWEMADFLLKKRIKMLVIACNTATAVALEEIK 106 (290)
T ss_dssp HHHHHHHHHTTTCSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEeCcchhHHHHHHHH
Confidence 35577888899999888776655533444443
No 213
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=21.89 E-value=82 Score=26.00 Aligned_cols=42 Identities=7% Similarity=-0.164 Sum_probs=30.0
Q ss_pred EEEeCCCChhhHhHHHHHHHHHHHHcCCEEEEEcCcchhhcc
Q psy5987 3 AQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVD 44 (197)
Q Consensus 3 aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~g~~~G~~GL~~ 44 (197)
||+.+||+..---.-...+++.+...+.-|+||-.|+.=|..
T Consensus 93 giil~GG~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~ 134 (289)
T 2v4u_A 93 GILVPGGFGIRGTLGKLQAISWARTKKIPFLGVXLGMQLAVI 134 (289)
T ss_dssp EEEECSCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHH
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHcCCcEEEECccHHHHHH
Confidence 789999865322233445666666778899999999987765
No 214
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=21.69 E-value=70 Score=26.46 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=22.4
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
+.+.+++.++.+.+.++++|++.|..|-..
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~ 48 (294)
T 2ehh_A 19 DYEALGNLIEFHVDNGTDAILVCGTTGESP 48 (294)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEESSTTTTGG
T ss_pred CHHHHHHHHHHHHHCCCCEEEECccccChh
Confidence 456677788888888888888888776543
No 215
>1mwp_A Amyloid A4 protein; heparin binding, sugar binding protein; 1.80A {Homo sapiens} SCOP: d.170.2.1
Probab=21.64 E-value=77 Score=22.52 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=17.1
Q ss_pred HHHHhhcCCceEEEe-----eeeccc
Q psy5987 131 KDQREKYCHLHIAGL-----VGSIDN 151 (197)
Q Consensus 131 ~~~~~~~~~i~vvgi-----PkTIDN 151 (197)
+++++.|++..|..| |.+|+|
T Consensus 44 ~YCrkvYP~l~ItnVveas~~v~i~~ 69 (96)
T 1mwp_A 44 QYCQEVYPELQITNVVEANQPVTIQN 69 (96)
T ss_dssp HHHHHHSTTSCEEEEEECSSCEEECC
T ss_pred HHHHHHCCCCccceeEecCCceeecc
Confidence 689999999998887 566665
No 216
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=21.45 E-value=53 Score=24.95 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcH
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSL 106 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~ 106 (197)
.+.+.+++.|++.+++.+++.||-.-.
T Consensus 105 ~~l~~~l~~L~~~~~~~i~v~GG~~l~ 131 (189)
T 2gd9_A 105 DNILEEVNKLKKNPGKDIWLYGGASLI 131 (189)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEECHHHH
T ss_pred CCHHHHHHHHHhCCCCeEEEEChHHHH
Confidence 467889999999999999999996433
No 217
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=21.26 E-value=2.7e+02 Score=21.02 Aligned_cols=32 Identities=19% Similarity=0.078 Sum_probs=25.5
Q ss_pred eEEEeCCCChhhHhHHHHHHHHHHHHcCCEEE
Q psy5987 2 TAQVNKKSSSTGMNAAVRACVRMGIYLGCKVF 33 (197)
Q Consensus 2 ~aIl~sGG~apG~Na~i~~~v~~~~~~g~~v~ 33 (197)
||++...-..|-.+.++.++-+.+...|++++
T Consensus 5 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~ 36 (255)
T 1byk_A 5 VAIIVTRLDSLSENLAVQTMLPAFYEQGYDPI 36 (255)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHHHHHHTCEEE
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHcCCEEE
Confidence 67888776777888888888888888887765
No 218
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=21.23 E-value=1.3e+02 Score=22.38 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=29.9
Q ss_pred EEEeCCCChhhHhH-----HHHHHHHHHHHcC-CEEEEEcCcchhhccC
Q psy5987 3 AQVNKKSSSTGMNA-----AVRACVRMGIYLG-CKVFFIKEGYQGMVDG 45 (197)
Q Consensus 3 aIl~sGG~apG~Na-----~i~~~v~~~~~~g-~~v~g~~~G~~GL~~~ 45 (197)
||+.+||+...+.. ....+++.+...+ .-|+|+-.|+.=|...
T Consensus 42 glil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~ 90 (191)
T 2ywd_A 42 ALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKE 90 (191)
T ss_dssp EEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEE
T ss_pred EEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECHHHHHHHHH
Confidence 78999995333322 2345666666778 8999999999877653
No 219
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=21.23 E-value=1.2e+02 Score=22.85 Aligned_cols=43 Identities=16% Similarity=0.005 Sum_probs=30.3
Q ss_pred EEEeCCCChhhHhHH-----HHHHHHHHHHcCCEEEEEcCcchhhccC
Q psy5987 3 AQVNKKSSSTGMNAA-----VRACVRMGIYLGCKVFFIKEGYQGMVDG 45 (197)
Q Consensus 3 aIl~sGG~apG~Na~-----i~~~v~~~~~~g~~v~g~~~G~~GL~~~ 45 (197)
+|+.+||+....... +..+++.+...+.-++|+-.|+.=|...
T Consensus 41 ~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~ 88 (196)
T 2nv0_A 41 GLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE 88 (196)
T ss_dssp EEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred EEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHHHHHHHHH
Confidence 688999975444322 1355566667788999999999966653
No 220
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=21.22 E-value=2e+02 Score=25.45 Aligned_cols=27 Identities=11% Similarity=0.281 Sum_probs=23.0
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCC
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDG 104 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~g 104 (197)
++++...+++.+++.++|+|++.++..
T Consensus 309 ~~ed~~~iA~~~~~aGaDgI~v~ntt~ 335 (443)
T 1tv5_A 309 NQEQKKEIADVLLETNIDGMIISNTTT 335 (443)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCBS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 455788899999999999999999743
No 221
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=21.15 E-value=2.7e+02 Score=20.94 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=23.2
Q ss_pred HhCCcEEE-EecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEe
Q psy5987 91 DRGITNLV-VIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGL 145 (197)
Q Consensus 91 ~~~I~~Li-viGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgi 145 (197)
.++-|.++ .+|.|+.......+.+ -+++++ +..++++++.+|+.+
T Consensus 91 ~~~pd~vvi~~G~ND~~~~~~~~~~----~l~~~i------~~l~~~~p~~~ii~~ 136 (232)
T 1es9_A 91 HIRPKIVVVWVGTNNHGHTAEQVTG----GIKAIV------QLVNERQPQARVVVL 136 (232)
T ss_dssp TCCCSEEEEECCTTCTTSCHHHHHH----HHHHHH------HHHHHHSTTCEEEEE
T ss_pred cCCCCEEEEEeecCCCCCCHHHHHH----HHHHHH------HHHHHHCCCCeEEEe
Confidence 34666654 4677776522333333 344444 345666556566554
No 222
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=21.08 E-value=83 Score=25.85 Aligned_cols=33 Identities=12% Similarity=-0.016 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHH
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFR 113 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~ 113 (197)
+.+.++++.|++.+.|.+++-.-.-+. ....|+
T Consensus 86 ~~l~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr 118 (268)
T 3s81_A 86 RYLERYLHMLEDAGAECIVIPCNTAHY-WFDDLQ 118 (268)
T ss_dssp HHHHHHHHHHHHTTCSEEECSCSGGGG-GHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCHHH-HHHHHH
Confidence 456788999999999987777655443 334443
No 223
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas}
Probab=21.05 E-value=79 Score=22.28 Aligned_cols=20 Identities=10% Similarity=-0.064 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhCCcEEEEe
Q psy5987 81 GRLKAAKNLIDRGITNLVVI 100 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~Livi 100 (197)
.++++.+.|++.++|++++-
T Consensus 4 Rl~~l~~~m~~~glDa~li~ 23 (132)
T 3o5v_A 4 KLDQIRLYLDQKGAELAIFS 23 (132)
T ss_dssp HHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEEc
Confidence 46788999999999999995
No 224
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Probab=20.88 E-value=34 Score=26.05 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCcHH
Q psy5987 81 GRLKAAKNLIDRGITNLVVIGGDGSLT 107 (197)
Q Consensus 81 ~~~~~~~~l~~~~I~~LiviGG~gs~~ 107 (197)
+.+.+++.|++.+++.++++||-.-.+
T Consensus 97 ~l~~~l~~l~~~~~~~i~v~GG~~l~~ 123 (178)
T 3jtw_A 97 SPVELVKRIQKEKGKDVWIVGGAKIID 123 (178)
T ss_dssp CHHHHHHHHHTSSCCEEEEEECHHHHH
T ss_pred CHHHHHHHHHhCCCCEEEEEChHHHHH
Confidence 577888999999999999999974443
No 225
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=20.88 E-value=81 Score=26.73 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=25.7
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHH
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTG 108 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~ 108 (197)
+.+.+++.++.+.+.++++|++.|..|-...
T Consensus 53 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~ 83 (332)
T 2r8w_A 53 DIEAFSALIARLDAAEVDSVGILGSTGIYMY 83 (332)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESSTTTTGGG
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh
Confidence 5667888999999999999999998875543
No 226
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=20.73 E-value=1.4e+02 Score=24.11 Aligned_cols=79 Identities=13% Similarity=-0.103 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHcCCEEEEEcCcchhhccCCCCe-EECChhhhhhhhhhcCceecccCCCCccChhHHHHHHHHHHHhCC
Q psy5987 16 AAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNI-VEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGI 94 (197)
Q Consensus 16 a~i~~~v~~~~~~g~~v~g~~~G~~GL~~~~~~~-~~l~~~~v~~~~~~gGs~LgssR~~~~~~~~~~~~~~~~l~~~~I 94 (197)
...+.+++++.+.|++=+++... +. .+ .+....-.+.+...|+.+........ ...++...++.+++.+.
T Consensus 137 ~~~~~~~~~l~~~g~~~ia~i~~-----~~--~~~~~~~~~~~~~l~~~G~~v~~~~~~~~--~~~d~~~~~~~l~~~~~ 207 (375)
T 4evq_A 137 QIGRATGDAMIKAGLKKAVTVTW-----KY--AAGEEMVSGFKKSFTAGKGEVVKDITIAF--PDVEFQSALAEIASLKP 207 (375)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEE-----SS--HHHHHHHHHHHHHHHHTTCEEEEEEEECT--TCCCCHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHcCCcEEEEEec-----Cc--hHHHHHHHHHHHHHHHcCCeEEEEEecCC--CCccHHHHHHHHHhcCC
Confidence 45667788888888855555421 11 11 00111112234556666554433322 12345567777888899
Q ss_pred cEEEEecCC
Q psy5987 95 TNLVVIGGD 103 (197)
Q Consensus 95 ~~LiviGG~ 103 (197)
|.+++.+.+
T Consensus 208 dai~~~~~~ 216 (375)
T 4evq_A 208 DCVYAFFSG 216 (375)
T ss_dssp SEEEEECCT
T ss_pred CEEEEecCc
Confidence 998886544
No 227
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.00A {Streptococcus pyogenes}
Probab=20.54 E-value=86 Score=22.18 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHhCCcEEEEec
Q psy5987 80 AGRLKAAKNLIDRGITNLVVIG 101 (197)
Q Consensus 80 ~~~~~~~~~l~~~~I~~LiviG 101 (197)
..++++.+.|++.++|++++-.
T Consensus 10 ~Rl~~l~~~m~~~~~da~li~~ 31 (132)
T 3ovk_A 10 QRLGHCLRQMAEKGLEALLVTH 31 (132)
T ss_dssp HHHHHHHHHHHHHTCCEEEECS
T ss_pred HHHHHHHHHHHHCCCCEEEEcC
Confidence 3567889999999999999876
No 228
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=20.33 E-value=79 Score=25.76 Aligned_cols=24 Identities=8% Similarity=0.176 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCc
Q psy5987 82 RLKAAKNLIDRGITNLVVIGGDGS 105 (197)
Q Consensus 82 ~~~~~~~l~~~~I~~LiviGG~gs 105 (197)
..++++.|++.+.|.+++-....+
T Consensus 63 ~~~~~~~L~~~g~d~iviaCNTas 86 (273)
T 2oho_A 63 TWELVNFLLTQNVKMIVFACNTAT 86 (273)
T ss_dssp HHHHHHHHHTTTCSEEEECCHHHH
T ss_pred HHHHHHHHHHCCCCEEEEeCchHh
Confidence 456788899999998877665444
No 229
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.26 E-value=2e+02 Score=20.55 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=36.9
Q ss_pred ChhHHHHHHHHHHHhCCcEEEEecCCCcHHHHHHHHHHhHHHHHHHHhcCCCcHHHHhhcCCceEEEee
Q psy5987 78 EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLV 146 (197)
Q Consensus 78 ~~~~~~~~~~~l~~~~I~~LiviGG~gs~~~a~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~vvgiP 146 (197)
+.++.+++.+..+.++-.-|++|=..+- +.|.| | |.+.+++++.+.-+.-|
T Consensus 60 dkewaekairfvkslgaqvliiiydqdq----nrlee-f-------------srevrrrgfevrtvtsp 110 (134)
T 2l69_A 60 DKEWAEKAIRFVKSLGAQVLIIIYDQDQ----NRLEE-F-------------SREVRRRGFEVRTVTSP 110 (134)
T ss_dssp SHHHHHHHHHHHHHHCCCCEEEEECSCH----HHHHH-H-------------HHHHHHTTCCEEEESSH
T ss_pred cHHHHHHHHHHHHhcCCeEEEEEEeCch----hHHHH-H-------------HHHHHhcCceEEEecCh
Confidence 4677888999999999999999876653 33422 2 36788888887766544
Done!