RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5987
(197 letters)
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 746
Score = 350 bits (901), Expect = e-118
Identities = 128/184 (69%), Positives = 151/184 (82%)
Query: 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
+ GMNAAVRA VRM IY+GC+V+ I+EGYQG+VDGGDNI EA W V I+ GGT+IG+
Sbjct: 12 AQGMNAAVRAVVRMAIYVGCRVYAIREGYQGLVDGGDNIEEAQWEDVRGILSLGGTIIGT 71
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSIT 130
ARC +FRE+ GRLKAA+NL+ GI LVVIGGDGSLTGA+LFR+EWP LL++L+ G IT
Sbjct: 72 ARCKEFRERPGRLKAARNLVSNGIDALVVIGGDGSLTGADLFREEWPSLLEELVDTGKIT 131
Query: 131 KDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIME 190
+Q E++ HL I GLVGSIDND CGTDMTIG DSALHRI EAIDAI STA SHQR F++E
Sbjct: 132 AEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALHRICEAIDAISSTAQSHQRAFVVE 191
Query: 191 VMGR 194
VMGR
Sbjct: 192 VMGR 195
Score = 99.0 bits (247), Expect = 3e-24
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 32/198 (16%)
Query: 3 AQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 62
A ++ + + GMNAA R+ VR + G V I G+ G+ + E WS V +
Sbjct: 393 AIIHVGAPAGGMNAATRSAVRYALARGHTVIAIHNGFSGLARHD--VRELTWSDVEGWVG 450
Query: 63 KGGTVIGSAR---CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPEL 119
+GG+ +G+ R D A + I L++IGG +
Sbjct: 451 EGGSELGTNRSLPGDDLGTIAYYFQ------QHKIDGLIIIGGFEAFEALYQLDA----- 499
Query: 120 LDQLLKDGSITKDQREKYCHLHI--AGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAI- 176
REKY I + +I N+ GT+ ++G+D+AL+ I E D I
Sbjct: 500 -------------AREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNEITEYCDNIK 546
Query: 177 VSTAYSHQRTFIMEVMGR 194
S + S +R F++E MG
Sbjct: 547 QSASASKRRVFVVETMGG 564
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include eukaryotic ATP-dependent
phosphofructokinases. These have evolved from the
bacterial PFKs by gene duplication and fusion events and
exhibit complex allosteric behavior.
Length = 762
Score = 323 bits (829), Expect = e-107
Identities = 131/184 (71%), Positives = 157/184 (85%)
Query: 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
+ GMNAAVRA VRMGIY+G KVFF+ EGY+G+V GGD I +A W SVS+ + +GGT+IGS
Sbjct: 15 AQGMNAAVRAVVRMGIYVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGS 74
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSIT 130
ARC +FRE+ GRL+AA NLI RGITNL VIGGDGSLTGA+LFR EWP LL++L+KDG IT
Sbjct: 75 ARCKEFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKIT 134
Query: 131 KDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIME 190
+++ KY HL+I G+VGSIDNDFCGTDMTIGTDSALHRI E +DAI +TA SHQRTF++E
Sbjct: 135 EEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDSALHRICEVVDAITTTAQSHQRTFVLE 194
Query: 191 VMGR 194
VMGR
Sbjct: 195 VMGR 198
Score = 86.0 bits (213), Expect = 1e-19
Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 26/194 (13%)
Query: 3 AQVNKKSSSTGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 62
A VN + + GMNAAVR+ VR G+ G + + I +G++G+ G IVE W V
Sbjct: 393 AIVNVGAPAAGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAKGQ--IVELGWIDVGGWTG 450
Query: 63 KGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQ 122
+GG+ +G+ R K A N GI L+++GG + G L Q
Sbjct: 451 RGGSELGTKRTL---PKKDLETIAYNFQKYGIDGLIIVGGFEAYKG-----------LLQ 496
Query: 123 LLKDGSITKDQREKYCHLHIAGLV--GSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTA 180
L ++ RE+Y I ++ ++ N+ GTD ++G+D+AL+ +++ D I +A
Sbjct: 497 L-------REAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALMKYCDRIKQSA 549
Query: 181 YS-HQRTFIMEVMG 193
+R FI+E MG
Sbjct: 550 SGTKRRVFIVETMG 563
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase.
Length = 279
Score = 250 bits (641), Expect = 2e-84
Identities = 99/184 (53%), Positives = 118/184 (64%), Gaps = 24/184 (13%)
Query: 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
+ GMNAA+RA VR I G +V+ I EGY G+V G NI + +W SVS II +GGT IGS
Sbjct: 12 APGMNAAIRAVVRSAIAEGLEVYGIYEGYAGLVAG--NIKQLDWESVSDIIQRGGTFIGS 69
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSIT 130
ARC +FRE+ GRLKAA+NL GI LVVIGGDGS TGA+L E
Sbjct: 70 ARCPEFREREGRLKAAENLKKHGIDALVVIGGDGSYTGADLLTSEHG------------- 116
Query: 131 KDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIME 190
+ GL G+IDND CGTD TIG D+AL+ I+EAID I TA SHQRTF++E
Sbjct: 117 ---------FNCVGLPGTIDNDICGTDYTIGFDTALNTIVEAIDRIRDTASSHQRTFVVE 167
Query: 191 VMGR 194
VMGR
Sbjct: 168 VMGR 171
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 245 bits (627), Expect = 2e-81
Identities = 99/182 (54%), Positives = 121/182 (66%), Gaps = 19/182 (10%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR 72
GMNAA+R VR I G +V+ I EGY G+V+G +I E +W SVS II++GGT+IGSAR
Sbjct: 14 GMNAAIRGVVRSAIAEGLEVYGIYEGYAGLVEG--DIKELDWESVSDIINRGGTIIGSAR 71
Query: 73 CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD 132
C +FR + GR KAA+NL GI LVVIGGDGS TGA+L +EWP
Sbjct: 72 CKEFRTEEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWP--------------- 116
Query: 133 QREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIMEVM 192
KY ++ GL G+IDND GTD TIG D+AL I+EAID I TA SHQRTF++EVM
Sbjct: 117 --SKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRIRDTASSHQRTFVVEVM 174
Query: 193 GR 194
GR
Sbjct: 175 GR 176
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 197 bits (505), Expect = 3e-63
Identities = 85/182 (46%), Positives = 114/182 (62%), Gaps = 25/182 (13%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR 72
GMNAA+RA VR I G +V+ I +GY G+++G +IV+ + SVS II++GGT++GSAR
Sbjct: 15 GMNAAIRAVVRTAISEGLEVYGIYDGYAGLLEG--DIVKLDLKSVSDIINRGGTILGSAR 72
Query: 73 CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD 132
+F+++ GR KA +NL GI LVVIGGDGS GA + L + I
Sbjct: 73 FPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGA------------KRLTEHGI--- 117
Query: 133 QREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIMEVM 192
+ GL G+IDND GTD TIG D+AL+ +EAID + TA SH+R FI+EVM
Sbjct: 118 --------PVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRLRDTASSHERVFIVEVM 169
Query: 193 GR 194
GR
Sbjct: 170 GR 171
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
metabolism].
Length = 347
Score = 196 bits (501), Expect = 2e-62
Identities = 80/182 (43%), Positives = 104/182 (57%), Gaps = 24/182 (13%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR 72
GMNA +RA VR I G +VF I GY G+++G +I V +I++GGT +GSAR
Sbjct: 16 GMNAVIRAVVRTAIKEGLEVFGIYNGYLGLLEG--DIKPLTREDVDDLINRGGTFLGSAR 73
Query: 73 CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD 132
+F+ + GR AA+NL GI LVVIGGDGS TGA L +E
Sbjct: 74 FPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGG--------------- 118
Query: 133 QREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIMEVM 192
+ + G+ +IDND GTD TIG D+AL +EAID + TA SH+R FI+EVM
Sbjct: 119 -------IPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLRDTASSHERIFIVEVM 171
Query: 193 GR 194
GR
Sbjct: 172 GR 173
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 182 bits (465), Expect = 1e-57
Identities = 86/184 (46%), Positives = 114/184 (61%), Gaps = 24/184 (13%)
Query: 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
+ GMNAA+RA VR IY G +V+ I+ GY+G+++G I +VS IIH+GGT++G+
Sbjct: 11 APGMNAAIRAVVRTAIYHGFEVYGIRRGYKGLING--KIEPLESKNVSGIIHRGGTILGT 68
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSIT 130
ARC +F+ + R KA +NL GI LVVIGGDGS TGA +E G I
Sbjct: 69 ARCPEFKTEEVREKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE-----------GGIP 117
Query: 131 KDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIME 190
+ GL G+IDND GTD TIG D+AL+ II+A+D I TA SH+R F++E
Sbjct: 118 -----------VIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIRDTATSHERAFVIE 166
Query: 191 VMGR 194
VMGR
Sbjct: 167 VMGR 170
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 162 bits (412), Expect = 2e-49
Identities = 81/184 (44%), Positives = 110/184 (59%), Gaps = 25/184 (13%)
Query: 11 STGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
+ GMNAA+R VR I G +V+ I++GY G++ G +IV + SVS II++GGT +GS
Sbjct: 12 APGMNAAIRGVVRSAIAEGLEVYGIRDGYAGLIAG--DIVPLDRYSVSDIINRGGTFLGS 69
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSIT 130
AR +F+++ G+ KA + L GI LVVIGGDGS GA +L + G
Sbjct: 70 ARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAM-----------RLTEHG--- 115
Query: 131 KDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIME 190
GL G+IDND GTD TIG D+AL+ ++EAID I T+ SHQR ++E
Sbjct: 116 ---------FPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRIRDTSSSHQRISVVE 166
Query: 191 VMGR 194
VMGR
Sbjct: 167 VMGR 170
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family
that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 324
Score = 113 bits (284), Expect = 2e-30
Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 26/184 (14%)
Query: 13 GMNAAVRACVRMGIY-LGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSA 71
G+NA +R VR I G +V I++G++G+++G D + + V I+ +GGT++GS+
Sbjct: 13 GLNAVIRGVVRRAIAEYGWEVIGIRDGWRGLLEG-DTVPLLDLEDVRGILPRGGTILGSS 71
Query: 72 RCSDFR-EKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSIT 130
R + F+ E+ G K NL + G+ L+ IGGDG+L A +
Sbjct: 72 RTNPFKYEEDGDDKIVANLKELGLDALIAIGGDGTLGIARRLADK--------------- 116
Query: 131 KDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIME 190
L + G+ +IDND TD T G D+A+ EA+D + +TA SH R ++E
Sbjct: 117 --------GLPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDRLHTTAESHHRVMVVE 168
Query: 191 VMGR 194
VMGR
Sbjct: 169 VMGR 172
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 85.5 bits (212), Expect = 6e-20
Identities = 64/195 (32%), Positives = 97/195 (49%), Gaps = 39/195 (20%)
Query: 13 GMNAAVRACVR--MGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
G+NA +RA V G Y G +V I++ QG++ +E + V ++ GGT++G+
Sbjct: 18 GLNAVIRAVVHRARGTY-GWEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGTILGT 76
Query: 71 ARCSD---FREKAGRLK-AAKNLID----RGITNLVVIGGDGSLTGANLFRQEWPELLDQ 122
D F G L+ ++ +ID G+ L+ IGGDGSL +L +
Sbjct: 77 TNKGDPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLA-----------ILRR 125
Query: 123 LLKDGSITKDQREKYCHLHIAGLVG---SIDNDFCGTDMTIGTDSALHRIIEAIDAIVST 179
L + G I LVG +IDND T+++IG D+A++ EA+D + T
Sbjct: 126 LAQQGGI--------------NLVGIPKTIDNDVGATEVSIGFDTAVNIATEALDRLHFT 171
Query: 180 AYSHQRTFIMEVMGR 194
A SH R I+EVMGR
Sbjct: 172 AASHNRVMILEVMGR 186
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 78.9 bits (195), Expect = 2e-17
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 27/185 (14%)
Query: 13 GMNAAVRACVRMGIY-LGCK-VFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
G+N +R V I G K ++ K GY+G+ ++ ++ + V +I GGT++GS
Sbjct: 101 GLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYK--EDWIKLDPKDVKTIHRLGGTILGS 158
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSIT 130
+R + LI GI L +GGDG+ GA +I
Sbjct: 159 SRGGFDPKVM-----VDTLIRHGINILFTLGGDGTHRGAL-----------------AIY 196
Query: 131 KDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTF-IM 189
K+ R + ++ + G+ +IDND D + G +A+ AI A A S + I+
Sbjct: 197 KELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAYVEAKSAKNGVGIV 256
Query: 190 EVMGR 194
++MGR
Sbjct: 257 KLMGR 261
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 58.2 bits (141), Expect = 3e-10
Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 31/187 (16%)
Query: 13 GMNAAVR--ACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
G+N +R C +Y ++ I GY+G N + V+ I +GGT++G+
Sbjct: 101 GLNTVIREIVCGLSYMYGVTRILGIDGGYRGFY--SRNTIPLTPKVVNDIHKRGGTILGT 158
Query: 71 ARCSDFREKAGR--LKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGS 128
+R G K ++ DRGI + +IGGDG+ GA++
Sbjct: 159 SR-------GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASV----------------- 194
Query: 129 ITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYS-HQRTF 187
I ++ R + + +AG+ +IDND D + G D+A+ AI+A A S
Sbjct: 195 IYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESVENGIG 254
Query: 188 IMEVMGR 194
++++MGR
Sbjct: 255 LVKLMGR 261
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 443
Score = 55.3 bits (134), Expect = 2e-09
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 43/175 (24%)
Query: 13 GMNAAVRACV-----RMGIYLGCKVFFIKEGYQGMV-DGGDNIVEANWSSVSSIIHKGGT 66
G+N +RA V G+ ++ I+ GYQG++ G + VE V+ I GGT
Sbjct: 94 GLNDVIRAIVLELHHHYGVR---RILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGT 150
Query: 67 VIGSARCSDFREKAGRLKAA---KNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQL 123
++GS+R G L I L VIGGDG+L GA+ +E
Sbjct: 151 ILGSSR--------GPQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEE-------- 194
Query: 124 LKDGSITKDQREKYCHLHIAGLVG---SIDNDFCGTDMTIGTDSALHRIIEAIDA 175
I + R L I+ ++G +IDND + G ++A+ + EAI
Sbjct: 195 -----IER--RG----LKIS-VIGIPKTIDNDINFIQKSFGFETAVEKATEAIRC 237
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 47.5 bits (113), Expect = 1e-06
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 26/185 (14%)
Query: 13 GMNAAVRACV-RMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSA 71
G+N +R V + IY + I GY+G + G + + + V +I GG+++G +
Sbjct: 67 GLNDVIRQIVFTLEIYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLGVS 126
Query: 72 RC-SDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSIT 130
R + + ++A RGI L V+GG+G+ GAN E
Sbjct: 127 RGGAKTSDIVDSIEA------RGINMLFVLGGNGTHAGANAIHNEC-------------- 166
Query: 131 KDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTF-IM 189
R++ + + G+ +IDND D T G D+A+ AI++ A+S ++
Sbjct: 167 ---RKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGLV 223
Query: 190 EVMGR 194
++MGR
Sbjct: 224 KLMGR 228
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional.
Length = 416
Score = 35.6 bits (83), Expect = 0.010
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 149 IDNDFCGTDMTIGTDSALHRIIEAI--DAIVSTAY-SHQRTFIMEVMGR 194
IDND GTD G SA I ++ A+ A + + FI+EVMGR
Sbjct: 142 IDNDLPGTDHCPGFGSAAKYIATSVLEAALDVAAMANTSKVFILEVMGR 190
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Validated.
Length = 403
Score = 35.4 bits (82), Expect = 0.015
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 31/173 (17%)
Query: 36 KEGYQGMVDGGDNIVEANWSSVSSIIHK-GGTVIGSAR--------CSD---FREKAGRL 83
+ GYQG++ G + + + ++H+ GG+ IG++R C +E L
Sbjct: 42 RSGYQGLLLGDSIEITPAVRANAGLLHRYGGSPIGNSRVKLTNVADCVKRGLVKEGENPL 101
Query: 84 K-AAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHI 142
K AA+ L G+ L IGGD + T A +L L ++G Y L +
Sbjct: 102 KVAAERLAADGVDILHTIGGDDTNTTA-------ADLAAYLAENG---------Y-DLTV 144
Query: 143 AGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIM-EVMGR 194
GL +IDND ++G +A + D +++ ++ R I+ EVMGR
Sbjct: 145 VGLPKTIDNDVVPIRQSLGAWTAAEQGARFFDNVINEHSANPRMLIIHEVMGR 197
>gnl|CDD|233279 TIGR01125, TIGR01125, ribosomal protein S12 methylthiotransferase
RimO. Members of this protein are the
methylthiotransferase RimO, which modifies a conserved
Asp residue in ribosomal protein S12. This clade of
radical SAM family proteins is closely related to the
tRNA modification bifunctional enzyme MiaB (see
TIGR01574), and it catalyzes the same two types of
reactions: a radical-mechanism sulfur insertion, and a
methylation of the inserted sulfur. This clade spans
alpha and gamma proteobacteria, cyano bacteria,
Deinococcus, Porphyromonas, Aquifex, Helicobacter,
Campylobacter, Thermotoga, Chlamydia, Streptococcus
coelicolor and Clostridium, but does not include most
other gram positive bacteria, archaea or eukaryotes
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 430
Score = 33.2 bits (76), Expect = 0.063
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 83 LKAAKNLIDRGITNLVVIGGDGSLTGANLFR-QEWPELLDQLLKDGSI 129
LK A+ L+D+G+ +++I D + G +L+R + +LL++L K G I
Sbjct: 170 LKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGI 217
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate
1-phosphotransferase. Diphosphate--fructose-6-phosphate
1-phosphotransferase catalyzes the addition of phosphate
from diphosphate (PPi) to fructose 6-phosphate to give
fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is
also known as pyrophosphate-dependent
phosphofructokinase. The usage of PPi-dependent enzymes
in glycolysis presumably frees up ATP for other
processes. TIGR02482 represents the ATP-dependent
6-phosphofructokinase enzyme contained within Pfam
pfam00365: Phosphofructokinase. This model hits
primarily bacterial, plant alpha, and plant beta
sequences [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 539
Score = 33.1 bits (76), Expect = 0.075
Identities = 51/188 (27%), Positives = 75/188 (39%), Gaps = 39/188 (20%)
Query: 22 VRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVS-SIIHK----GG-TVIGSARCSD 75
V G++ K G + G +++ N+ ++ +I GG +IGS R
Sbjct: 85 VISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKI 144
Query: 76 FRE--KAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQ 133
E A L AK L + LV+IGGD S T A L L + K G T+
Sbjct: 145 ETEEQFAKALTTAKKL---KLDGLVIIGGDDSNTNAAL-------LAEYFAKHGLKTQ-- 192
Query: 134 REKYCHLHIAGLVGSIDNDF--CGTDMTIGTDSALHRIIEAI-----DAIVSTAYSHQRT 186
+ G+ +ID D + + G D+A E I DA+ + Y H
Sbjct: 193 --------VIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSAKKYWH--- 241
Query: 187 FIMEVMGR 194
FI +MGR
Sbjct: 242 FI-RLMGR 248
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 30.8 bits (69), Expect = 0.52
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 29/180 (16%)
Query: 25 GIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVS-SIIHK-----GGTVIGSARCSDFRE 78
GIY K + + G + G D + N+ +++ S++++ G ++ S R R
Sbjct: 198 GIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGR-GKVRN 256
Query: 79 KAGRLKAAKNLIDR-GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKY 137
K L A +N++ + + LV+IGGDGS + A L + + E+
Sbjct: 257 K-DDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFA-----------------ERQ 298
Query: 138 CHLHIAGLVGSIDNDFC--GTDMTIGTDSALHRIIEAIDAIVSTAYS-HQRTFIMEVMGR 194
+ I G+ +ID D +++ G D+A E I + + + H ++ VMGR
Sbjct: 299 IPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLCTDVKTGHNVYHVVRVMGR 358
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 30.0 bits (68), Expect = 0.59
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 57 VSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSL 106
V+ I+ K G V+ R + EKA K L G N+ VI GDG+L
Sbjct: 94 VAEIVGKSGKVVTIERIPELAEKA-----KKTLKKLGYDNVEVIVGDGTL 138
>gnl|CDD|224030 COG1105, FruK, Fructose-1-phosphate kinase and related
fructose-6-phosphate kinase (PfkB) [Carbohydrate
transport and metabolism].
Length = 310
Score = 30.3 bits (69), Expect = 0.62
Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 83 LKAAKNLIDRGITNLVV-IGGDGSL 106
+KAA+ L+ GI N++V +G DG+L
Sbjct: 204 IKAARELLAEGIENVIVSLGADGAL 228
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include pyrophosphate-dependent
phosphofructokinases. These are found in bacteria as
well as plants. These may be dimeric nonallosteric
enzymes as in bacteria or allosteric heterotetramers as
in plants.
Length = 550
Score = 30.2 bits (68), Expect = 0.70
Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 34/175 (19%)
Query: 29 GCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGG-TVIGSARCSDFREKAGRLKAAK 87
G ++ K G G++ + +E N + + GG +I S R E + K A+
Sbjct: 104 GSTLYGFKGGPAGILKC--DYIELNAEYIQPYRNTGGFDMICSGR--TKIETEDQFKQAE 159
Query: 88 NLIDR-GITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLV 146
+ + LVVIGGD S T A L L + G T+ + G+
Sbjct: 160 ETAKKLDLDALVVIGGDDSNTNAAL-------LAENFRSKGLKTR----------VIGVP 202
Query: 147 GSIDNDFCGTDMTI--GTDSALHRIIE-----AIDAIVSTAYSHQRTFIMEVMGR 194
+ID D ++ G D+A E DA + Y H F+ ++MGR
Sbjct: 203 KTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARSTGKYWH---FV-KLMGR 253
>gnl|CDD|238570 cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor
6-phosphofructokinase (pfkB) and related sugar kinases.
FruK plays an important role in the predominant pathway
for fructose utilisation.This group also contains
tagatose-6-phophate kinase, an enzyme of the tagatose
6-phosphate pathway, which responsible for breakdown of
the galactose moiety during lactose metabolism by
bacteria such as L. lactis.
Length = 289
Score = 29.8 bits (68), Expect = 0.75
Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 83 LKAAKNLIDRGITNLVV-IGGDGSL 106
+ AA+ LI+RG N++V +G DG+L
Sbjct: 203 IAAARKLIERGAENVLVSLGADGAL 227
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular
trafficking and secretion].
Length = 858
Score = 29.9 bits (67), Expect = 0.90
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 35 IKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGI 94
+ Y G+ D N V + V SI HK G + S E R AA LI
Sbjct: 754 VNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGS---EAHTR--AALGLIG--- 805
Query: 95 TNLVVIGGDGSLTGANLFRQEW 116
+L + G L ++W
Sbjct: 806 -DLAGMFPKGELK--FGLDEDW 824
>gnl|CDD|107286 cd06291, PBP1_Qymf_like, Ligand binding domain of the lacI-like
transcription regulator from a novel metal-reducing
bacterium Alkaliphilus Metalliredigens (strain Qymf) and
its close homologs. This group includes the ligand
binding domain of the lacI-like transcription regulator
from a novel metal-reducing bacterium Alkaliphilus
Metalliredigens (strain Qymf) and its close homologs.
Qymf is a strict anaerobe that could be grown in the
presence of borax and its cells are straight rods that
produce endospores. This group is a member of the
LacI-GalR family repressors that are composed of two
functional domains: an N-terminal HTH (helix-turn-helix)
domain, which is responsible for the DNA-binding
specificity, and a C-terminal ligand-binding domain,
which is homologous to the sugar-binding domain of
ABC-type transport systems that contain the type I
periplasmic binding protein-like fold. As also observed
in the periplasmic binding proteins, the C-terminal
domain of the bacterial transcription repressor
undergoes a conformational change upon ligand binding
which in turn changes the DNA binding affinity of the
repressor.
Length = 265
Score = 29.5 bits (67), Expect = 0.96
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 81 GRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDG--------SITKD 132
GRL AA+ LI+RG ++ IGG + R E LD L ++G D
Sbjct: 100 GRL-AAEELIERGCKHIAHIGGPNNTVSPTNLRYE--GFLDVLKENGLEVRIIEIQENFD 156
Query: 133 QREKYCHL-HIAGLVGSIDNDFCGTDMT 159
EK + + ID F D+T
Sbjct: 157 DAEKKEEIKELLEEYPDIDGIFASNDLT 184
>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent
methyltransferase [General function prediction only].
Length = 227
Score = 29.2 bits (66), Expect = 1.0
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 12/49 (24%)
Query: 83 LKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITK 131
KA K + + G+ NL ++ GD E+LD L+ DGS+ K
Sbjct: 86 AKALKKIKELGLKNLRLLCGDA------------VEVLDYLIPDGSLDK 122
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 29.0 bits (65), Expect = 1.4
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 94 ITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDF 153
+T LV G G T L + Q+L DG KY H ++ LVG F
Sbjct: 42 VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVS-LVGQEPVLF 100
Query: 154 CGT---DMTIG-TDSALHRIIEAIDAIVSTAYSHQRTFIME 190
+ ++ G + + EA +H +FI E
Sbjct: 101 ARSLQDNIAYGLQSCSFECVKEAAQK------AHAHSFISE 135
>gnl|CDD|236869 PRK11168, glpC, sn-glycerol-3-phosphate dehydrogenase subunit C;
Provisional.
Length = 396
Score = 29.1 bits (66), Expect = 1.7
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 16/52 (30%)
Query: 81 GRLKAAK-----------NLIDRGITNLVVIGGDGSLTGANLFRQEWPELLD 121
G L A+ I++GI VI S T R E+PELL
Sbjct: 210 GFLDKARKQAEFNVESLREAIEKGIP---VIATSSSCTLT--LRDEYPELLG 256
>gnl|CDD|240352 PTZ00302, PTZ00302, N-acetylglucosamine-phosphate mutase;
Provisional.
Length = 585
Score = 28.9 bits (65), Expect = 2.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 171 EAIDAIVSTAYSHQRTFI 188
+ IDAIVS + R FI
Sbjct: 529 DKIDAIVSKYDNAARAFI 546
>gnl|CDD|217027 pfam02424, ApbE, ApbE family. This prokaryotic family of
lipoproteins are related to ApbE from Salmonella
typhimurium. ApbE is involved in thiamine synthesis.
More specifically is may be involved in the conversion
of aminoimidazole ribotide (AIR) to
4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP).
Length = 255
Score = 28.0 bits (63), Expect = 3.5
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 84 KAAKNLIDRGITNLVV-IGGDGSLTGANLFRQEW 116
+ A+ L GITN +V IGGD G + W
Sbjct: 122 RVAEVLRAAGITNALVEIGGDIRALGDKPDGRPW 155
>gnl|CDD|225740 COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase
[General function prediction only].
Length = 355
Score = 27.8 bits (62), Expect = 3.5
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 85 AAKNLIDRGITNLVVIGGDGSLT 107
A + +++RG+ +V GGDG+
Sbjct: 92 AVRRMVERGVDLIVFAGGDGTAR 114
>gnl|CDD|107280 cd06285, PBP1_LacI_like_7, Ligand-binding domain of uncharacterized
DNA-binding regulatory proteins that are members of the
LacI-GalR family of bacterial transcription repressors.
This group includes the ligand-binding domain of
uncharacterized DNA-binding regulatory proteins that are
members of the LacI-GalR family of bacterial
transcription repressors. The LacI-GalR family
repressors are composed of two functional domains: an
N-terminal HTH (helix-turn-helix) domain, which is
responsible for the DNA-binding specificity, and a
C-terminal ligand-binding domain, which is homologous to
the sugar-binding domain of ABC-type transport systems
that contain the type I periplasmic binding protein-like
fold. As also observed in the periplasmic binding
proteins, the C-terminal domain of the bacterial
transcription repressor undergoes a conformational
change upon ligand binding which in turn changes the DNA
binding affinity of the repressor.
Length = 265
Score = 27.8 bits (62), Expect = 3.7
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 70 SARCSDFREKAGRLKAAKNLIDRGITNLVVIGG 102
+ D GRL A ++L+D G + V+ G
Sbjct: 93 AVTGDD--VLGGRL-ATRHLLDLGHRRIAVLAG 122
>gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.
Length = 202
Score = 27.4 bits (62), Expect = 4.0
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 12/48 (25%)
Query: 84 KAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITK 131
KA K + + G+TNL ++ GD E+L + DGS+ +
Sbjct: 79 KALKKIEEEGLTNLRLLCGDA------------VEVLLDMFPDGSLDR 114
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 27.8 bits (62), Expect = 4.0
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 59 SIIHKGGTVIGSARCSDFREKAGRL--KAAKNLIDRGITNLVVIG 101
+I+H+GGTV + + + K G L A NLI GIT +V++
Sbjct: 166 AILHRGGTVTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILA 210
>gnl|CDD|180841 PRK07106, PRK07106, 5-aminoimidazole-4-carboxamide ribonucleotide
transformylase; Provisional.
Length = 390
Score = 27.7 bits (62), Expect = 4.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 46 GDNIVEANWSSVSSIIHKGGTV 67
GDNI A S V I GG++
Sbjct: 343 GDNIERAAKSGVKYIAQPGGSI 364
>gnl|CDD|225449 COG2896, MoaA, Molybdenum cofactor biosynthesis enzyme [Coenzyme
metabolism].
Length = 322
Score = 27.6 bits (62), Expect = 4.3
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 118 ELLDQLLKDGSITKDQREK------YCHLHIA--GLVGSIDNDFCGT 156
E+L +L + ++ ++ + H G + + N FC T
Sbjct: 207 EILRKLEERATLLPVRKRLHGRAKYFIHPDGGEIGFIAPVSNPFCAT 253
>gnl|CDD|115139 pfam06463, Mob_synth_C, Molybdenum Cofactor Synthesis C. This
region contains two iron-sulphur (3Fe-4S) binding sites.
Mutations in this region of human MOCS1 cause MOCOD
(Molybdenum Co-Factor Deficiency) type A.
Length = 127
Score = 26.8 bits (60), Expect = 4.4
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
Query: 118 ELLDQLLKDGSITKDQ------REKYCHLHIAGLVG---SIDNDFCGT 156
E+LD+L + + + +Y G +G + N FC +
Sbjct: 27 EILDRLEERFPLLAARKRTGGPARRYRIPGGGGRIGFIAPMSNPFCAS 74
>gnl|CDD|234133 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family.
This family consists largely of 1-phosphofructokinases,
but also includes tagatose-6-kinases and
6-phosphofructokinases.
Length = 303
Score = 27.2 bits (61), Expect = 5.5
Identities = 12/25 (48%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Query: 83 LKAAKNLIDRGITNLVV-IGGDGSL 106
++AA+ L+DRG N++V +G DG+L
Sbjct: 202 IEAARELLDRGAENVLVSLGADGAL 226
>gnl|CDD|224513 COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic
diacylglycerol kinase [Lipid metabolism / General
function prediction only].
Length = 301
Score = 27.3 bits (61), Expect = 5.9
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 37/113 (32%)
Query: 84 KAAKNLIDRGITNLVVIGGDGSL-------------------TG-ANLF------RQEWP 117
+ A+ G ++ GGDG++ G AN F +
Sbjct: 49 EIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPPLGILPGGTANDFARALGIPLDDI 108
Query: 118 ELLDQLLKDGSITK----DQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSAL 166
E +L+K G K + ++ AG+ G ++ +
Sbjct: 109 EAALELIKSGETRKVDLGQVNGRRYFINNAGI-GFD------AEVVAAVEEER 154
>gnl|CDD|107273 cd06278, PBP1_LacI_like_2, Ligand-binding domain of uncharacterized
DNA-binding regulatory proteins that are members of the
LacI-GalR family of bacterial transcription repressors.
This group includes the ligand-binding domain of
uncharacterized DNA-binding regulatory proteins that are
members of the LacI-GalR family of bacterial
transcription repressors. The LacI-GalR family
repressors are composed of two functional domains: an
N-terminal HTH (helix-turn-helix) domain, which is
responsible for the DNA-binding specificity, and a
C-terminal ligand-binding domain, which is homologous to
the sugar-binding domain of ABC-type transport systems
that contain the type I periplasmic binding protein-like
fold. As also observed in the periplasmic binding
proteins, the C-terminal domain of the bacterial
transcription repressor undergoes a conformational
change upon ligand binding which in turn changes the DNA
binding affinity of the repressor.
Length = 266
Score = 27.1 bits (61), Expect = 6.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 70 SARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQE 115
A CSD E AGRL AA+ L+ +G + IGG T + R+
Sbjct: 93 DAVCSDNYE-AGRL-AAELLLAKGCRRIAFIGGPAD-TSTSRERER 135
>gnl|CDD|234672 PRK00164, moaA, molybdenum cofactor biosynthesis protein A;
Reviewed.
Length = 331
Score = 27.0 bits (61), Expect = 6.5
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 118 ELLDQLLKDGSITKDQ------REKYCHLHIAGLVG---SIDNDFCGT 156
E+ +L + G + + + + H G +G + +DFC +
Sbjct: 214 EIRARLAERGWTLQPRARSGGPAQYFRHPDYGGEIGLIAPVTHDFCAS 261
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 27.2 bits (61), Expect = 6.6
Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 41/186 (22%)
Query: 25 GIYLGCKVF--------FIKEGYQGMVDGGDNIVEANWSSVSSIIHKGG-TVIGSARCSD 75
G++ G K FI G G+++G +E + + GG +IGS R +
Sbjct: 91 GLFDGLKKLNPDSKLFGFIG-GPLGLLNG--KYIEITEEVIDEYRNTGGFDMIGSGR-TK 146
Query: 76 FREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQRE 135
+ + + + + LV+IGGD S T A + L + K G
Sbjct: 147 IETEEQKEACLETVKKLKLDGLVIIGGDDSNTNAAI-------LAEYFAKHG-------- 191
Query: 136 KYCHLHIAGLVGSIDNDFCGT--DMTIGTDSALHRIIEAI-----DAIVSTAYSHQRTFI 188
C + G+ +ID D + + G D+A E I DA+ + Y H FI
Sbjct: 192 --CKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALSAKKYWH---FI 246
Query: 189 MEVMGR 194
++MGR
Sbjct: 247 -KLMGR 251
>gnl|CDD|182958 PRK11096, ansB, L-asparaginase II; Provisional.
Length = 347
Score = 27.0 bits (60), Expect = 6.7
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 34 FIKEGYQGMVDGG---DNIVEANWSSVSSIIHKGGTVIGSAR 72
+ GY G+V G N+ + + ++++ G V+ S+R
Sbjct: 252 LVDAGYDGIVSAGVGNGNLYKTVFDTLATAAKNGVAVVRSSR 293
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 27.2 bits (60), Expect = 6.8
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 24/143 (16%)
Query: 57 VSSIIHKGG-TVIGSARCSDFREKAGRLKAAKNLIDR-GITNLVVIGGDGSLTGANLFRQ 114
++ I+++GG +I S R E +++A+ + ++ + LVVIGGD S T A +
Sbjct: 160 INGILNQGGFNIICSGRHK--IETEEQMRASLEICEKLKLHGLVVIGGDDSNTNAAV--- 214
Query: 115 EWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCG--TDMTIGTDSALHRIIEA 172
L + ++ S T + G +ID D + + G D+A+ E
Sbjct: 215 ----LAEYFKRNSSSTV----------VVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQ 260
Query: 173 IDAIVSTAYSHQ-RTFIMEVMGR 194
I +I+ + + + +MGR
Sbjct: 261 IGSIMDAIKTEGYGYYFVRLMGR 283
>gnl|CDD|212003 TIGR04280, geopep_mat_rSAM, putative geopeptide radical SAM
maturase. This family is the radical SAM/SPASM domain
putative peptide maturase for geopeptide, described by
model TIGR04229. The SPASM domain (see model TIGR04085)
frequently marks peptide-modifying radical SAM enzymes.
Length = 428
Score = 27.0 bits (60), Expect = 7.2
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 92 RGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQ 133
+ + +L+ I G+ T N +R E+P LLD LL +G +T ++
Sbjct: 228 KAVCDLIAIQIGGNYTREN-YR-EFPRLLDLLLAEG-LTPER 266
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 26.4 bits (59), Expect = 8.6
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 28/63 (44%)
Query: 84 KAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPE-------------------LLDQLL 124
+A +NL G N+ V GDGS + WPE LLDQ L
Sbjct: 109 QARRNLETLGYENVTVRHGDGS--------KGWPEEAPYDRIIVTAAAPEVPEALLDQ-L 159
Query: 125 KDG 127
K G
Sbjct: 160 KPG 162
>gnl|CDD|176653 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar
proteins. WRN is a unique RecQ DNA helicase exhibiting
an exonuclease activity. It contains a DEDDy-type
DnaQ-like 3'-5' exonuclease domain possessing three
conserved sequence motifs termed ExoI, ExoII and ExoIII,
with a specific YX(3)D pattern at ExoIII. These motifs
are clustered around the active site and contain four
conserved acidic residues that serve as ligands for the
two metal ions required for catalysis. Mutations in the
WRN gene cause Werner syndrome, an autosomal recessive
disorder associated with premature aging and increased
susceptibility to cancer and type II diabetes. WRN
interacts with key proteins involved in DNA replication,
recombination, and repair. It is believed to maintain
genomic stability and life span by participating in DNA
processes. WRN is stimulated by Ku70/80, an important
regulator of genomic stability.
Length = 170
Score = 26.0 bits (58), Expect = 9.7
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 9/39 (23%)
Query: 117 PELLDQLLKDGSITK-------DQR--EKYCHLHIAGLV 146
P L QLL+D SI K D R + + + G+V
Sbjct: 62 PPSLKQLLEDPSILKVGVGIKGDARKLARDFGIEVRGVV 100
>gnl|CDD|235537 PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.
Length = 684
Score = 26.7 bits (60), Expect = 9.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 83 LKAAKNLIDRGITNLVVIG 101
LKAA ++RGI + V++G
Sbjct: 391 LKAAAICLERGIADCVLLG 409
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.400
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,925,888
Number of extensions: 926447
Number of successful extensions: 1153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1121
Number of HSP's successfully gapped: 78
Length of query: 197
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 105
Effective length of database: 6,857,034
Effective search space: 719988570
Effective search space used: 719988570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)