RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5987
(197 letters)
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 321 bits (826), Expect = e-106
Identities = 98/183 (53%), Positives = 130/183 (71%), Gaps = 1/183 (0%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGG-DNIVEANWSSVSSIIHKGGTVIGSA 71
GMN+ VRA VR I+ GC+ F + EGY+G+V GG + I E +W V +GGT IG+A
Sbjct: 17 GMNSNVRAIVRSAIFKGCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTA 76
Query: 72 RCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITK 131
RC +F+++ GRL A++LI+ G+ L+V GGDGSLTGA+LFR EWP L+++LLK I+
Sbjct: 77 RCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISN 136
Query: 132 DQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIMEV 191
+Q E+ HL+I G VGSIDND TD TIG SAL RI +AID + +TA SH R F++EV
Sbjct: 137 EQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAIDYVEATANSHSRAFVVEV 196
Query: 192 MGR 194
MGR
Sbjct: 197 MGR 199
Score = 195 bits (497), Expect = 1e-58
Identities = 38/185 (20%), Positives = 78/185 (42%), Gaps = 24/185 (12%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR 72
G+N+AV + + G + + I G+ G+ +++ NW + +GG+ IG+ R
Sbjct: 407 GINSAVYSMATYCMSQGHRPYAIYNGWSGLARH-ESVRSLNWKDMLGWQSRGGSEIGTNR 465
Query: 73 CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD 132
+ G A L+++GG + + +
Sbjct: 466 VTPEEADLGM--IAYYFQKYEFDGLIIVGGFEAFESLHQLERA----------------- 506
Query: 133 QREKYCHLHI--AGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQ-RTFIM 189
RE Y I + ++ N+ GT+ ++G+D+AL+ ++E D + +A S + R F++
Sbjct: 507 -RESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCDVVKQSASSTRGRAFVV 565
Query: 190 EVMGR 194
+ G
Sbjct: 566 DCQGG 570
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 319 bits (820), Expect = e-105
Identities = 103/182 (56%), Positives = 131/182 (71%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR 72
GMNAAVRA VR GI+ GC VF + EGY+G++ GG + + W V + +GGT+IG+AR
Sbjct: 19 GMNAAVRAVVRTGIHFGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTAR 78
Query: 73 CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD 132
+FR++ GR +AA NLI +GI LVV GGDGSLTGA+LFR EWP L+D+L+ +G TK+
Sbjct: 79 SMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKE 138
Query: 133 QREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIMEVM 192
+ Y +L I GLVGSIDND GTD TIG SAL RI E +D I +TA SH R F++EVM
Sbjct: 139 EVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYIDATAKSHSRAFVVEVM 198
Query: 193 GR 194
GR
Sbjct: 199 GR 200
Score = 190 bits (485), Expect = 6e-57
Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 25/185 (13%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR 72
+NAA RA + G K + I G+ G++ G+ + E +W V + + GG+ IG+ R
Sbjct: 407 ALNAATRAATLYCLSHGHKPYAIMNGFSGLIQTGE-VKELSWIDVENWHNLGGSEIGTNR 465
Query: 73 CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD 132
A + L+++GG R
Sbjct: 466 SVASE---DLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDG----------------- 505
Query: 133 QREKYCHLHI--AGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTA-YSHQRTFIM 189
R ++ +I + ++ N+ GT+ ++G D+ L+ ++ D I +A + +R F+
Sbjct: 506 -RTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTDDIKQSASATRRRVFVC 564
Query: 190 EVMGR 194
EV G
Sbjct: 565 EVQGG 569
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 318 bits (818), Expect = e-105
Identities = 127/182 (69%), Positives = 149/182 (81%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR 72
GMNAAVRA VR+GI+ G +VFF+ EGYQG+VDGGD+I EA W SVS ++ GGTVIGSAR
Sbjct: 29 GMNAAVRAVVRVGIFTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSAR 88
Query: 73 CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD 132
C DFRE+ GRL+AA NL+ RGITNL VIGGDGSLTGA+ FR EW +LL L K G IT +
Sbjct: 89 CKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAE 148
Query: 133 QREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIMEVM 192
+ + +L+I GLVGSIDNDFCGTDMTIGTDSALHRI E +DAI +TA SHQRTF++EVM
Sbjct: 149 EATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVDAITTTAQSHQRTFVLEVM 208
Query: 193 GR 194
GR
Sbjct: 209 GR 210
Score = 188 bits (479), Expect = 4e-56
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 26/185 (14%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR 72
GMNAAVR+ VR+G+ G +V + +G++G G I EA WS V +GG+ +GS R
Sbjct: 414 GMNAAVRSTVRIGLIQGNRVLVVHDGFEGPAKG--QIEEAGWSYVGGWTGQGGSKLGSKR 471
Query: 73 CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD 132
+ + + N+ I LV+IGG + TG +
Sbjct: 472 TLPKK---SFEQISANITKFNIQGLVIIGGFEAYTGGLELMEG----------------- 511
Query: 133 QREKYCHLHI--AGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTA-YSHQRTFIM 189
R+++ L I + ++ N+ G+D ++G D+AL+ I D I +A + +R FI+
Sbjct: 512 -RKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSAAGTKRRVFII 570
Query: 190 EVMGR 194
E MG
Sbjct: 571 ETMGG 575
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 321 bits (825), Expect = e-104
Identities = 108/182 (59%), Positives = 134/182 (73%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR 72
GMNAAVRA R GI+ GCKV+ EGY G+V GGD + E W V ++ GGT+IG+AR
Sbjct: 224 GMNAAVRAVTRAGIFYGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTAR 283
Query: 73 CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD 132
C +FRE+ GRL+A N++ GI LVV GGDGSLTGA+LFR+EWPEL+ +LL + ITK+
Sbjct: 284 CKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKE 343
Query: 133 QREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIMEVM 192
Q E + +L I GLVGSIDND CGTD TIG S+L RIIE +D I +TA SH R F++EVM
Sbjct: 344 QYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLERIIELVDYIDATAASHSRAFVVEVM 403
Query: 193 GR 194
GR
Sbjct: 404 GR 405
Score = 190 bits (484), Expect = 2e-56
Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 25/185 (13%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR 72
+N A R + G +VF I+ G+ G++ G + E NW V + GG+ IG+ R
Sbjct: 612 ALNPATRVATLNSLAKGHRVFAIRNGFAGLIRHGA-VRELNWIDVEDWHNTGGSEIGTNR 670
Query: 73 CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD 132
A L++IGG + T
Sbjct: 671 SLPSD---DMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAA----------------- 710
Query: 133 QREKYCHLHI--AGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTA-YSHQRTFIM 189
R +Y +I L ++ N+ GT+ ++G+D+ L+ + DA+ +A S +RTF++
Sbjct: 711 -RAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASASRRRTFVV 769
Query: 190 EVMGR 194
EV G
Sbjct: 770 EVQGG 774
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 320 bits (821), Expect = e-104
Identities = 106/183 (57%), Positives = 130/183 (71%), Gaps = 1/183 (0%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDN-IVEANWSSVSSIIHKGGTVIGSA 71
GMN VRA VR GIY GCKVF I EGY+G+V GG+ I E W V + +GGT IG+A
Sbjct: 195 GMNPFVRAVVRAGIYKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTA 254
Query: 72 RCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITK 131
RC +FRE++GRLKA KN+ID GI L+V GGDGSLTGA+ FR EWP L+++LL+ I++
Sbjct: 255 RCKEFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQ 314
Query: 132 DQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIMEV 191
Q + +L+I G VGSIDND TD TIG S+L RI AID I +TA SH R FI+EV
Sbjct: 315 QQFNTHQNLNICGAVGSIDNDMSSTDATIGAFSSLDRICRAIDYIDATANSHSRAFIVEV 374
Query: 192 MGR 194
MGR
Sbjct: 375 MGR 377
Score = 194 bits (495), Expect = 7e-58
Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 24/185 (12%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR 72
GMN+AV + + G + I G+ G+ +++ NW + GG+ IG+ R
Sbjct: 585 GMNSAVYSMATYCMSRGHVPYAIHNGFSGLAR-HESVRSINWLDIEGWGSLGGSEIGTNR 643
Query: 73 CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD 132
G A G L+++GG + + +
Sbjct: 644 TLPNDADIGM--IAYFFEKYGFDGLILVGGFEAFISLHQLERA----------------- 684
Query: 133 QREKYCHLHI--AGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIV-STAYSHQRTFIM 189
R Y L I + +I N+ GT+ ++G+D+ L+ +E D I S A + R F++
Sbjct: 685 -RINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAATRNRVFVV 743
Query: 190 EVMGR 194
EV G
Sbjct: 744 EVQGG 748
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 249 bits (638), Expect = 1e-83
Identities = 72/182 (39%), Positives = 94/182 (51%), Gaps = 25/182 (13%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR 72
GMNAAVRA R+ I G +VF I+ G+ G+V G +I V+ +I+ GT + SAR
Sbjct: 15 GMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAG--DIFPLESEDVAHLINVSGTFLYSAR 72
Query: 73 CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD 132
+F E+ G+L + L GI +VVIGGDGS GA +
Sbjct: 73 YPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRHG---------------- 116
Query: 133 QREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIMEVM 192
+ GL G+IDND TD TIG D+A ++AID I TA SH R FI+ VM
Sbjct: 117 -------FNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASSHHRVFIVNVM 169
Query: 193 GR 194
GR
Sbjct: 170 GR 171
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 247 bits (633), Expect = 8e-83
Identities = 80/182 (43%), Positives = 101/182 (55%), Gaps = 25/182 (13%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR 72
GMNAAVRA VR IY +V+ I GY G++ G I + SV IIH+GGT + +AR
Sbjct: 15 GMNAAVRAVVRKAIYHDVEVYGIYNGYAGLISG--KIEKLELGSVGDIIHRGGTKLYTAR 72
Query: 73 CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD 132
C +F+ GR K NL GI LVVIGGDGS GA +
Sbjct: 73 CPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEHG---------------- 116
Query: 133 QREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIMEVM 192
G+ G+IDND GTD TIG D+AL+ +I+AID I TA SH+RT+++EVM
Sbjct: 117 -------FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTYVIEVM 169
Query: 193 GR 194
GR
Sbjct: 170 GR 171
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 236 bits (606), Expect = 8e-79
Identities = 75/182 (41%), Positives = 101/182 (55%), Gaps = 25/182 (13%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR 72
GMNAA+R VR + G +V I +GY G+ + +V+ + SVS +I++GGT +GSAR
Sbjct: 16 GMNAAIRGVVRSALTEGLEVMGIYDGYLGLYED--RMVQLDRYSVSDMINRGGTFLGSAR 73
Query: 73 CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD 132
+FR++ R A +NL RGI LVVIGGDGS GA +
Sbjct: 74 FPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM----------------- 116
Query: 133 QREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIMEVM 192
GL G+IDND GTD TIG +AL ++EAID + T+ SHQR ++EVM
Sbjct: 117 ------GFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQRISVVEVM 170
Query: 193 GR 194
GR
Sbjct: 171 GR 172
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 171 bits (436), Expect = 3e-51
Identities = 35/187 (18%), Positives = 73/187 (39%), Gaps = 24/187 (12%)
Query: 13 GMNAAVRACVR--MGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
G + + K+F K G G+++ + +E S ++S + GG I S
Sbjct: 86 GGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLEN--DKIELTESLINSYRNTGGFDIVS 143
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSIT 130
+ + + KA + + +++IGGD S T A + + +
Sbjct: 144 SGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYF-------------- 189
Query: 131 KDQREKYCHLHIAGLVGSIDNDFCG--TDMTIGTDSALHRIIEAIDAIVS-TAYSHQRTF 187
++ ++ + G+ +ID D +++ G DSA E I + + +
Sbjct: 190 ---KKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWH 246
Query: 188 IMEVMGR 194
+++MGR
Sbjct: 247 FVKLMGR 253
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 162 bits (413), Expect = 3e-48
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 26/186 (13%)
Query: 13 GMNAAVRACVRMGI--YLGCKVFFIKEGYQGMVDG-GDNIVEANWSSVSSIIHKGGTVIG 69
G+N +R+ GI Y +V + GY G+ +E + V++I H GGT++G
Sbjct: 111 GLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILG 170
Query: 70 SARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSI 129
S+R ++ L G+ L +GGDG+ GA + QE
Sbjct: 171 SSRGPQDPKEM-----VDTLERLGVNILFTVGGDGTQRGALVISQE-------------- 211
Query: 130 TKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYS-HQRTFI 188
+ + + + G+ +IDND + T G +A+ + ++AI A + A S + +
Sbjct: 212 ---AKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGV 268
Query: 189 MEVMGR 194
+++MGR
Sbjct: 269 VKLMGR 274
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 123 bits (311), Expect = 6e-34
Identities = 31/193 (16%), Positives = 62/193 (32%), Gaps = 28/193 (14%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDN----IVEANWSSVSSIIHKGGTVI 68
+NA+ + K+ I G G++ + + +++S++ +
Sbjct: 17 VINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSGAF 76
Query: 69 GSARCSDFREKAGR---LKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLK 125
GS R + R + + I GG S
Sbjct: 77 GSCRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLK-------------- 122
Query: 126 DGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSAL----HRIIEAIDAIVSTAY 181
+++ + + ++DND TD G S +EA + S +
Sbjct: 123 ---VSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSA 179
Query: 182 SHQRTFIMEVMGR 194
+ + F++EVMGR
Sbjct: 180 TSTKVFVLEVMGR 192
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 5e-05
Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 38/132 (28%)
Query: 89 LIDRGITNLVVIGGDGSLTGANL-FR-QEWPELLDQ------------------------ 122
L++ G NLVV G SL G NL R + P LDQ
Sbjct: 370 LVN-GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 123 --LLKDGS--ITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAI----- 173
LL S I KD + + + + + F G+D+ + + S RI++ I
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 174 --DAIVSTAYSH 183
+ +H
Sbjct: 489 KWETTTQFKATH 500
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 1e-04
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 109 ANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHR 168
++ + + ++++L K + K +E + SI + + + + ALHR
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP------SIYLELK---VKLENEYALHR 447
Query: 169 IIEAIDAIVSTAYSHQRTF 187
I +D Y+ +TF
Sbjct: 448 SI--VD-----HYNIPKTF 459
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase
(EC 2.7.1.56), struct genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga
maritima} SCOP: c.72.1.1
Length = 331
Score = 30.7 bits (70), Expect = 0.25
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 83 LKAAKNLIDRGITNLVVIGGDGSL 106
+K A+ L ++ ++V +
Sbjct: 224 VKLAEKLAEKSQVSVVSYEVKNDI 247
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 28.8 bits (65), Expect = 0.88
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 12/48 (25%)
Query: 84 KAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITK 131
+ + G++NL V+ D E+L +++ D S+
Sbjct: 73 ACLASAHEEGLSNLRVMCHDA------------VEVLHKMIPDNSLRM 108
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 28.9 bits (65), Expect = 0.96
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 12/52 (23%)
Query: 80 AGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITK 131
R++A + G N+ + + + L G +TK
Sbjct: 87 QDRIRALRAAPAGGFQNIACLRSNAM------------KHLPNFFYKGQLTK 126
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase;
2.3A {Staphylococcus aureus}
Length = 306
Score = 28.6 bits (65), Expect = 1.0
Identities = 9/25 (36%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 83 LKAAKNLIDRGITNLVV-IGGDGSL 106
+K + L+D+G +++V +GGDG++
Sbjct: 200 IKYGRLLVDKGAQSVIVSLGGDGAI 224
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI,
protein structure initiative; 2.10A {Bacillus
halodurans} SCOP: c.72.1.1
Length = 306
Score = 28.6 bits (65), Expect = 1.1
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 83 LKAAKNLIDRGITNLVV-IGGDGSL 106
+ + LI GI +++V GDG+L
Sbjct: 200 IPHVQRLIGEGIESILVSFAGDGAL 224
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2,
glycolysis, transferase; HET: ATP; 1.98A {Escherichia
coli} PDB: 3n1c_A*
Length = 309
Score = 28.3 bits (64), Expect = 1.8
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 83 LKAAKNLIDRGITNLVVI--GGDGSL 106
KAA+ +++ G VV+ G G+L
Sbjct: 206 RKAAQEIVNSGKAKRVVVSLGPQGAL 231
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI,
protein structure initiative YORK SGX research center
for structural genomics; HET: ATP; 1.90A {Enterococcus
faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Length = 323
Score = 27.9 bits (63), Expect = 1.9
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 83 LKAAKNLIDRGITNLVV-IGGDGSL 106
A + GI +V+ +G DG++
Sbjct: 208 QTALTKPMFAGIEWIVISLGKDGAI 232
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 28.3 bits (62), Expect = 1.9
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 31/168 (18%)
Query: 48 NIVEANWSSVSSIIHKGGTVIGSARCSDFREKA-GRLKAAKNLIDRGITNLVVIGGDGSL 106
N + + + + + I + + + L + I
Sbjct: 63 NSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIAC---- 118
Query: 107 TGANLFRQEWPELLDQLLKD------------------GSITKDQREKYCHLHIAGLVGS 148
A + +WPEL+ QL+ + G I +D + ++ +
Sbjct: 119 --AEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA 176
Query: 149 I----DNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIMEVM 192
I + ++ + +AL +E A + +R FIM+V+
Sbjct: 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKA--NFDKESERHFIMQVV 222
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 27.2 bits (61), Expect = 3.0
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 28/63 (44%)
Query: 84 KAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPE-------------------LLDQLL 124
+A + L + + N+ GDG W L+ Q L
Sbjct: 114 QARRRLKNLDLHNVSTRHGDGWQ--------GWQARAPFDAIIVTAAPPEIPTALMTQ-L 164
Query: 125 KDG 127
+G
Sbjct: 165 DEG 167
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 27.4 bits (61), Expect = 3.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 84 KAAKNLIDRGITNLVVIGGDGSLTG 108
+ A + I L VI G+G L G
Sbjct: 242 EVALKMAKYSIEQLPVIRGEGDLIG 266
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational
changes, transferase, lactose metabolism; HET: MSE ANP
TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Length = 330
Score = 27.2 bits (61), Expect = 3.2
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 83 LKAAKNLIDRGITNLVV-IGGDGSL 106
+A + GI ++V +G G+
Sbjct: 225 KQAVSQPLFEGIEWIIVSLGAQGAF 249
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 27.4 bits (61), Expect = 3.4
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 28/63 (44%)
Query: 84 KAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPE-------------------LLDQLL 124
A +N+ GI N++ + GDG G PE Q L
Sbjct: 115 IAKRNVERLGIENVIFVCGDGYY-G-------VPEFSPYDVIFVTVGVDEVPETWFTQ-L 165
Query: 125 KDG 127
K+G
Sbjct: 166 KEG 168
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.10A {Thermus
thermophilus} SCOP: d.159.1.6
Length = 228
Score = 27.0 bits (59), Expect = 3.5
Identities = 6/54 (11%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 74 SDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDG 127
S+ L+ L + + + G+ L +++ L +
Sbjct: 12 SNPMGDLEALEKFVKLAPDTGADAIALIGN--LMPKAAKSRDYAAFFRILSEAH 63
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 27.1 bits (61), Expect = 3.7
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 28/63 (44%)
Query: 84 KAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPE-------------------LLDQLL 124
KA + L G N++VI GDG+L G + L+ Q L
Sbjct: 117 KAERTLRKLGYDNVIVIVGDGTL-G-------YEPLAPYDRIYTTAAGPKIPEPLIRQ-L 167
Query: 125 KDG 127
KDG
Sbjct: 168 KDG 170
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich,
S-adenosylmeth dependent, structural genomics, PSI;
2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Length = 214
Score = 26.8 bits (60), Expect = 3.7
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 13/48 (27%)
Query: 84 KAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITK 131
A +++ G+ N+ ++ DG L +DG I +
Sbjct: 80 YALDKVLEVGVPNIKLLWVDG-------------SDLTDYFEDGEIDR 114
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase;
HET: PE5; 1.93A {Bacillus subtilis}
Length = 527
Score = 27.1 bits (59), Expect = 4.2
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 80 AGRLKAAKNLIDRGITNLVVIGGD 103
A R + + + + N+VV+ GD
Sbjct: 357 AQRERVINFIKSKNLNNVVVLTGD 380
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich
domain 2, protein-ADP COM transferase; HET: ADP; 2.30A
{Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Length = 337
Score = 26.9 bits (60), Expect = 4.6
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 84 KAAKNLIDRGITNLVVIGGDGSL 106
A+ + L+ GGDG+L
Sbjct: 71 LEAERAMHENYDVLIAAGGDGTL 93
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 26.4 bits (59), Expect = 5.9
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 24/90 (26%)
Query: 57 VSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEW 116
++ + +K VIG R D + I N +I + +E
Sbjct: 102 MNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVN----EEEK 157
Query: 117 PE-------------------LLDQLLKDG 127
E L+D L +
Sbjct: 158 KELGLFDAIHVGASASELPEILVDL-LAEN 186
>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}
Length = 460
Score = 26.5 bits (59), Expect = 6.0
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 71 ARCSDF----REKAGRLKAAKNLIDRGITNLVVIGGDGSLTGA 109
DF R +K+ ++ I +VV+G GS G
Sbjct: 52 ENTPDFAKLDRSWIDSVKSLEDWI-INFDTVVVLGIGGSGLGN 93
>3l00_A SNAP-TAG; protein TAG, protein engineering, benzylguanine,
benzylated transferase; HET: BCS; 1.70A {Homo sapiens}
PDB: 3kzy_A* 3kzz_A* 1yfh_A* 1t39_A* 1qnt_A 1t38_A*
Length = 182
Score = 26.2 bits (58), Expect = 6.2
Identities = 4/10 (40%), Positives = 6/10 (60%)
Query: 99 VIGGDGSLTG 108
V+ GD + G
Sbjct: 151 VVQGDLDVGG 160
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 25.6 bits (57), Expect = 7.2
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 84 KAAKNLIDRGITNLVVIGGDGSLTG 108
AA+ + + I L + G D L G
Sbjct: 29 AAAQYMREHDIGALPICGDDDRLHG 53
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 26.4 bits (58), Expect = 7.5
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 7/29 (24%)
Query: 80 AGRLKAAKNLIDRGITNLVV------IGG 102
+G + AAK L + GIT+L++ IGG
Sbjct: 15 SG-ISAAKRLSEAGITDLLILEATDHIGG 42
>4e4r_A Phosphate acetyltransferase; structural genomics, EUTD, center for
structural genomics of infectious diseases, csgid; HET:
TRS; 1.44A {Staphylococcus aureus subsp}
Length = 331
Score = 26.0 bits (58), Expect = 8.0
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 83 LKAAKNLIDRGITNLVVIG 101
L AA L +V+G
Sbjct: 33 LTAATQLQATDYVTPIVLG 51
>1eh6_A O6-alkylguanine-DNA alkyltransferase; methyltransferase, DNA
repair; 2.00A {Homo sapiens} SCOP: a.4.2.1 c.55.7.1 PDB:
1eh7_A 1eh8_A*
Length = 207
Score = 25.9 bits (57), Expect = 8.0
Identities = 2/10 (20%), Positives = 5/10 (50%)
Query: 99 VIGGDGSLTG 108
V+ G++
Sbjct: 148 VVCSSGAVGN 157
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding,
transferase; HET: RIB ADP; 1.84A {Escherichia coli}
SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Length = 309
Score = 26.3 bits (59), Expect = 8.0
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 84 KAAKNLIDRGITNLVV-IGGDGSL 106
KAA+ L ++GI +++ +G G
Sbjct: 207 KAAQVLHEKGIRTVLITLGSRGVW 230
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 26.1 bits (58), Expect = 8.1
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 28/63 (44%)
Query: 84 KAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPE-------------------LLDQLL 124
A +NL G+ N+ VI GDGS G +P L++Q L
Sbjct: 129 FAKRNLERAGVKNVHVILGDGSK-G-------FPPKAPYDVIIVTAGAPKIPEPLIEQ-L 179
Query: 125 KDG 127
K G
Sbjct: 180 KIG 182
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli}
SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Length = 332
Score = 26.2 bits (58), Expect = 8.2
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 84 KAAKNLIDRGITNLVVIGGDGSL 106
+ + G+ ++ GGDG++
Sbjct: 73 RYVEEARKFGVATVIAGGGDGTI 95
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound
PER monomer, acyltransferase; HET: COA; 2.15A
{Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A*
2af3_C*
Length = 333
Score = 26.0 bits (58), Expect = 8.6
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 83 LKAAKNLIDRGITNLVVIG 101
L+AA +++RGI ++V++G
Sbjct: 30 LQAAAKILERGIADIVLVG 48
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 26.3 bits (57), Expect = 9.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 7/29 (24%)
Query: 80 AGRLKAAKNLIDRGITNLVV------IGG 102
AG LKAA L GI + +V +GG
Sbjct: 19 AG-LKAASTLHQNGIQDCLVLEARDRVGG 46
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure
funded by NIH, protein structure initiative, PSI; 2.75A
{Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Length = 329
Score = 26.0 bits (58), Expect = 9.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 83 LKAAKNLIDRGITNLVVIG 101
L+A L + N +VIG
Sbjct: 36 LEAVSKLAGNKVLNPIVIG 54
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura
genomics, JCSG, protein structure initiative, PSI, joint
CE structural genomics; 2.32A {Escherichia coli} SCOP:
c.77.1.5
Length = 355
Score = 26.0 bits (58), Expect = 9.4
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 83 LKAAKNLIDRGITNLVVIG 101
LKAA+ L +G+ +++
Sbjct: 40 LKAAQYLHQQGLATPILVA 58
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like
nucleotide-binding fold, structural genomics, BSGC
structure funded by NIH; 2.70A {Streptococcus pyogenes}
SCOP: c.77.1.5
Length = 337
Score = 26.0 bits (58), Expect = 9.7
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 83 LKAAKNLIDRGITNLVVIG 101
++AA L G+ +++G
Sbjct: 38 VRAAARLKFEGLLEPIILG 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.400
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,103,143
Number of extensions: 189538
Number of successful extensions: 767
Number of sequences better than 10.0: 1
Number of HSP's gapped: 725
Number of HSP's successfully gapped: 84
Length of query: 197
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 108
Effective length of database: 4,216,824
Effective search space: 455416992
Effective search space used: 455416992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.8 bits)