RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5987
(197 letters)
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 144 bits (363), Expect = 4e-41
Identities = 36/187 (19%), Positives = 74/187 (39%), Gaps = 24/187 (12%)
Query: 13 GMNAAVRACVR--MGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGS 70
G + + K+F K G G+++ + +E S ++S + GG I S
Sbjct: 83 GGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLEN--DKIELTESLINSYRNTGGFDIVS 140
Query: 71 ARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSIT 130
+ + + KA + + +++IGGD S T A + + +
Sbjct: 141 SGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYF-------------- 186
Query: 131 KDQREKYCHLHIAGLVGSIDNDFCG--TDMTIGTDSALHRIIEAIDAIVSTA-YSHQRTF 187
++ ++ + G+ +ID D +++ G DSA E I + A + +
Sbjct: 187 ---KKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWH 243
Query: 188 IMEVMGR 194
+++MGR
Sbjct: 244 FVKLMGR 250
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 132 bits (332), Expect = 3e-38
Identities = 76/182 (41%), Positives = 102/182 (56%), Gaps = 25/182 (13%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR 72
GMNAA+R VR + G +V I +GY G+ + D +V+ + SVS +I++GGT +GSAR
Sbjct: 16 GMNAAIRGVVRSALTEGLEVMGIYDGYLGLYE--DRMVQLDRYSVSDMINRGGTFLGSAR 73
Query: 73 CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD 132
+FR++ R A +NL RGI LVVIGGDGS GA +
Sbjct: 74 FPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE------------------ 115
Query: 133 QREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIMEVM 192
GL G+IDND GTD TIG +AL ++EAID + T+ SHQR ++EVM
Sbjct: 116 -----MGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQRISVVEVM 170
Query: 193 GR 194
GR
Sbjct: 171 GR 172
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 127 bits (320), Expect = 1e-36
Identities = 76/182 (41%), Positives = 103/182 (56%), Gaps = 25/182 (13%)
Query: 13 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHKGGTVIGSAR 72
GMNAA+R+ VR IY G +V+ + GY G++ G NI + V IIH+GGT++ +AR
Sbjct: 15 GMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAG--NIKKLEVGDVGDIIHRGGTILYTAR 72
Query: 73 CSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKD 132
C +F+ + G+ K + L GI LVVIGGDGS GA
Sbjct: 73 CPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLT------------------- 113
Query: 133 QREKYCHLHIAGLVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVSTAYSHQRTFIMEVM 192
G+ G+IDND GTD TIG D+AL+ +I+AID I TA SH+RT+++EVM
Sbjct: 114 ----EHGFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTYVIEVM 169
Query: 193 GR 194
GR
Sbjct: 170 GR 171
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 27.8 bits (60), Expect = 1.1
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 48 NIVEANWSSVSSIIHKGGTVIGSARCSDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLT 107
N + + + + + I + + + + + V +
Sbjct: 63 NSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAG-----IA 117
Query: 108 GANLFRQEWPELLDQL---LKDGSITKDQRE 135
A + +WPEL+ QL + + + T+ +E
Sbjct: 118 CAEIPVNQWPELIPQLVANVTNPNSTEHMKE 148
>d2af4c1 c.77.1.5 (C:2-333) Phosphotransacetylase Pta
{Methanosarcina thermophila [TaxId: 2210]}
Length = 332
Score = 27.4 bits (60), Expect = 1.2
Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 18/128 (14%)
Query: 83 LKAAKNLIDRGITNLVVIG---------GDGSLTGANL-------FRQEWPELLDQLLKD 126
L+AA +++RGI ++V++G GD L+ A + + E+ +L K
Sbjct: 29 LQAAAKILERGIADIVLVGNEADIKALAGDLDLSKAKIVDPKTYEKKDEYINAFYELRKH 88
Query: 127 GSITKDQREKYCHLHIAGLVGSIDNDFCGTDMT--IGTDSALHRIIEAIDAIVSTAYSHQ 184
IT + + ++ V ++ + S R I A
Sbjct: 89 KGITLENAAEIMSDYVYFAVMMAKLGEVDGVVSGAAHSSSDTLRPAVQIVKTAKGAALAS 148
Query: 185 RTFIMEVM 192
FI+ V
Sbjct: 149 AFFIISVP 156
>d1c7qa_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 442
Score = 26.4 bits (57), Expect = 2.4
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 77 REKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQREK 136
+ + R+K A I LVVIG GS G + L +Q
Sbjct: 54 KNEFSRIKQAAERIRNHSDALVVIGIGGSYLG--------ARAAIEALSHTF--HNQMND 103
Query: 137 YCHLHIAG 144
++ AG
Sbjct: 104 TTQIYFAG 111
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 26.2 bits (56), Expect = 3.7
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 109 ANLFRQEWPELLDQLLK 125
+ Q WP+LL +L
Sbjct: 117 SKGELQNWPDLLPKLCS 133
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 25.7 bits (55), Expect = 4.8
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 112 FRQEWPELLDQLLK 125
F WP LL L
Sbjct: 117 FPDRWPTLLSDLAS 130
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
{Staphylococcus aureus [TaxId: 1280]}
Length = 312
Score = 25.0 bits (53), Expect = 6.3
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 84 KAAKNLIDRGITNLVVIGGDGS 105
A+ + L+ GGDG+
Sbjct: 49 LEAERAMHENYDVLIAAGGDGT 70
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Streptomyces
coelicolor A3(2) [TaxId: 100226]}
Length = 253
Score = 24.9 bits (53), Expect = 7.1
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 84 KAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPEL 119
+ + G+T ++ + G+LTG L ++ P +
Sbjct: 198 LCMETFKELGVTAIIEVCPGGTLTG--LAKRALPGV 231
>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 250
Score = 24.8 bits (54), Expect = 7.1
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 103 DGSLTGANLFRQEWPELLDQLLKDGSITKDQREKYCHLHIAG 144
DGS +E LL Q+ ++G + + ++ C L +
Sbjct: 38 DGS-------EEENGRLLGQMEEEGILRRLKKYDNCWLALTD 72
>d1yzya1 c.146.1.1 (A:1-412) Hypothetical protein HI1011
{Haemophilus influenzae [TaxId: 727]}
Length = 412
Score = 25.0 bits (54), Expect = 8.1
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 86 AKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLL 124
A L G+TN + GG+ S + Q+
Sbjct: 338 AAKLKQYGVTNFITAGGETSSIVVQELGFTGFHIGKQIA 376
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956
{Aquifex aeolicus [TaxId: 63363]}
Length = 257
Score = 24.7 bits (52), Expect = 8.5
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 74 SDFREKAGRLKAAKNLIDRGITNLVVIGGDGSLTGANLFRQEWPELLDQLLKDGSITKDQ 133
+F+E+ L K +I +++V+ G+ + +E+ + +
Sbjct: 9 KNFKERFDLLPKLKGVIAEKQPDILVVVGN--ILKNEALEKEYERAHLARREPNRKVIHE 66
Query: 134 REKYCHLHIAGLVGSIDN 151
E Y + I
Sbjct: 67 NEHYIIETLDKFFREIGE 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.400
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 737,001
Number of extensions: 33804
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 21
Length of query: 197
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 116
Effective length of database: 1,295,466
Effective search space: 150274056
Effective search space used: 150274056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.5 bits)