BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5988
(68 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 75.9 bits (185), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/50 (66%), Positives = 41/50 (82%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67
GMNAAVRA VR+GI+ G +VFF+ EGYQG+VDGGD+I EA W SVS ++
Sbjct: 29 GMNAAVRAVVRVGIFTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQ 78
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSV 62
AGMNAAVR+ VR+G+ G +V + +G++G G I EA WS V
Sbjct: 413 AGMNAAVRSTVRIGLIQGNRVLVVHDGFEGPAKG--QIEEAGWSYV 456
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 32/49 (65%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSII 66
GMNAAVRA R GI+ GCKV+ EGY G+V GGD + E W V ++
Sbjct: 224 GMNAAVRAVTRAGIFYGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLL 272
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSV 62
+ +N A R + G +VF I+ G+ G++ G + E NW V
Sbjct: 611 SALNPATRVATLNSLAKGHRVFAIRNGFAGLIRHG-AVRELNWIDV 655
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 57.8 bits (138), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDN-IVEANWSSV 62
GMN VRA VR GIY GCKVF I EGY+G+V GG+ I E W V
Sbjct: 195 GMNPFVRAVVRAGIYKGCKVFCIHEGYEGLVRGGEKYIKETQWHDV 240
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 56.2 bits (134), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSV 62
GMNAAVRA VR GI+ GC VF + EGY+G++ GG + + W V
Sbjct: 19 GMNAAVRAVVRTGIHFGCDVFAVYEGYEGLLRGGKYLKKMAWEDV 63
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 766
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGG-DNIVEANWSSV 62
GMN+ VRA VR I+ GC+ F + EGY+G+V GG + I E +W V
Sbjct: 17 GMNSNVRAIVRSAIFKGCRAFVVMEGYEGLVRGGPEYIKEFHWEDV 62
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
GMNAA+R+ VR IY G +V+ + GY G++ G NI + V IIH+
Sbjct: 15 GMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAG--NIKKLEVGDVGDIIHR 63
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
GMNAA+R+ VR IY G +V+ + GY G++ G NI + V IIH+
Sbjct: 15 GMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAG--NIKKLEVGDVGDIIHR 63
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
GMNAA+R+ VR IY G +V+ + GY G++ G NI + V IIH+
Sbjct: 15 GMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAG--NIKKLEVGDVGDIIHR 63
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
GMNAAVRA VR IY +V+ I GY G++ G I + SV IIH+
Sbjct: 15 GMNAAVRAVVRKAIYHDVEVYGIYNGYAGLISG--KIEKLELGSVGDIIHR 63
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
GMNAA+R VR + G +V I +GY G+ + D +V+ + SVS +I++
Sbjct: 15 PGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYE--DRMVQLDRYSVSDMINR 64
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDG 50
GMNAAVRA R+ I G +VF I+ G+ G+V G
Sbjct: 15 GMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAG 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,604,027
Number of Sequences: 62578
Number of extensions: 44372
Number of successful extensions: 221
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 15
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)