Query psy5988
Match_columns 68
No_of_seqs 133 out of 1042
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 23:41:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0205 PfkA 6-phosphofructoki 99.7 1.8E-17 3.8E-22 121.1 4.3 52 14-67 12-63 (347)
2 cd00764 Eukaryotic_PFK Phospho 99.7 4.9E-17 1.1E-21 127.7 3.4 55 14-68 13-67 (762)
3 cd00763 Bacterial_PFK Phosphof 99.6 1.8E-16 3.8E-21 114.3 4.0 52 14-67 10-61 (317)
4 TIGR02478 6PF1K_euk 6-phosphof 99.6 2.3E-16 4.9E-21 123.7 3.9 55 14-68 10-64 (745)
5 TIGR02482 PFKA_ATP 6-phosphofr 99.6 2.8E-16 6.2E-21 112.6 3.8 52 14-67 9-60 (301)
6 PF00365 PFK: Phosphofructokin 99.6 3.6E-16 7.8E-21 110.9 4.2 52 14-67 10-61 (282)
7 cd00764 Eukaryotic_PFK Phospho 99.6 2.5E-16 5.5E-21 123.8 3.1 58 9-68 390-451 (762)
8 PLN02884 6-phosphofructokinase 99.6 3.4E-16 7.5E-21 116.2 3.7 59 9-67 54-117 (411)
9 PRK03202 6-phosphofructokinase 99.6 1.1E-15 2.4E-20 110.2 3.9 52 14-67 11-62 (320)
10 PRK14071 6-phosphofructokinase 99.6 1.4E-15 3.1E-20 111.0 3.9 60 9-68 5-69 (360)
11 cd00363 PFK Phosphofructokinas 99.6 2.2E-15 4.9E-20 109.0 4.4 52 14-67 10-61 (338)
12 TIGR02483 PFK_mixed phosphofru 99.6 1.4E-15 3.1E-20 109.8 3.0 52 14-67 9-62 (324)
13 PLN02564 6-phosphofructokinase 99.6 2.3E-15 5.1E-20 113.8 4.2 53 14-68 97-151 (484)
14 PRK06830 diphosphate--fructose 99.6 2.3E-15 5E-20 112.7 3.5 55 14-68 90-147 (443)
15 TIGR02478 6PF1K_euk 6-phosphof 99.5 3.2E-15 6.9E-20 117.3 3.2 58 9-68 390-451 (745)
16 PRK14072 6-phosphofructokinase 99.5 4.4E-15 9.5E-20 110.2 3.6 49 14-64 13-63 (416)
17 PTZ00286 6-phospho-1-fructokin 99.5 9.4E-15 2E-19 109.8 3.6 52 14-67 97-150 (459)
18 PRK06555 pyrophosphate--fructo 99.4 1.4E-13 3E-18 102.3 3.7 45 14-60 13-59 (403)
19 KOG2440|consensus 99.4 1.3E-13 2.7E-18 107.4 3.4 55 14-68 6-60 (666)
20 TIGR02477 PFKA_PPi diphosphate 99.3 1.5E-12 3.2E-17 99.6 3.5 57 9-67 68-130 (539)
21 PRK07085 diphosphate--fructose 99.3 1.9E-12 4.2E-17 99.2 3.2 57 9-67 71-133 (555)
22 PLN03028 pyrophosphate--fructo 99.3 2.3E-12 4.9E-17 99.8 3.6 57 9-67 80-142 (610)
23 PLN02251 pyrophosphate-depende 99.3 3.5E-12 7.5E-17 98.1 4.0 57 9-67 97-159 (568)
24 cd00765 Pyrophosphate_PFK Phos 99.2 5.3E-12 1.1E-16 96.8 3.5 57 9-67 73-135 (550)
25 PTZ00287 6-phosphofructokinase 99.2 6.6E-12 1.4E-16 103.6 3.6 57 9-67 178-240 (1419)
26 PTZ00468 phosphofructokinase f 99.2 1.8E-11 3.9E-16 100.6 3.3 57 9-67 103-165 (1328)
27 PTZ00287 6-phosphofructokinase 98.9 8.7E-10 1.9E-14 91.3 2.2 56 9-68 837-897 (1419)
28 KOG2440|consensus 98.4 9.3E-08 2E-12 75.1 1.5 58 9-68 373-434 (666)
29 PTZ00468 phosphofructokinase f 98.0 4.1E-06 8.9E-11 69.8 3.1 54 12-67 683-740 (1328)
30 TIGR01752 flav_long flavodoxin 82.6 1 2.2E-05 29.2 2.0 56 11-66 84-159 (167)
31 PF08901 DUF1847: Protein of u 70.9 5.8 0.00013 26.7 3.0 36 6-41 53-88 (157)
32 PF01328 Peroxidase_2: Peroxid 66.2 2 4.2E-05 31.6 0.0 9 14-22 48-56 (317)
33 PRK02984 sspO acid-soluble spo 51.9 6 0.00013 21.8 0.4 8 16-23 10-17 (49)
34 PF03054 tRNA_Me_trans: tRNA m 49.5 15 0.00032 27.3 2.2 31 9-41 1-31 (356)
35 PRK11440 putative hydrolase; P 46.8 29 0.00064 22.5 3.2 28 20-47 132-159 (188)
36 cd00431 cysteine_hydrolases Cy 46.3 31 0.00066 21.4 3.1 28 19-46 120-147 (161)
37 KOG1615|consensus 44.1 24 0.00053 25.0 2.5 29 22-50 92-120 (227)
38 TIGR03614 RutB pyrimidine util 42.9 35 0.00077 23.0 3.2 43 5-47 145-189 (226)
39 cd01012 YcaC_related YcaC rela 42.7 45 0.00097 21.0 3.5 29 20-48 99-127 (157)
40 PF00857 Isochorismatase: Isoc 42.2 33 0.00072 21.5 2.8 28 20-47 123-150 (174)
41 cd01013 isochorismatase Isocho 41.8 37 0.0008 22.6 3.1 28 20-47 153-180 (203)
42 PRK11609 nicotinamidase/pyrazi 39.5 51 0.0011 21.8 3.5 43 5-47 136-180 (212)
43 cd01015 CSHase N-carbamoylsarc 39.5 50 0.0011 21.3 3.4 27 20-46 125-151 (179)
44 PF07685 GATase_3: CobB/CobQ-l 38.0 27 0.00059 22.3 1.9 28 22-49 30-57 (158)
45 PF13580 SIS_2: SIS domain; PD 36.5 72 0.0016 19.8 3.7 27 15-41 111-137 (138)
46 PRK03619 phosphoribosylformylg 35.0 34 0.00074 23.2 2.1 31 9-40 1-32 (219)
47 PF08410 DUF1737: Domain of un 34.2 49 0.0011 18.4 2.3 18 22-39 16-33 (54)
48 PRK12359 flavodoxin FldB; Prov 33.7 44 0.00096 22.2 2.5 57 11-67 85-162 (172)
49 KOG0407|consensus 32.6 28 0.0006 22.7 1.3 19 14-32 95-113 (139)
50 COG0412 Dienelactone hydrolase 32.2 59 0.0013 22.3 2.9 24 15-38 35-58 (236)
51 TIGR02864 spore_sspO small, ac 31.7 21 0.00046 19.8 0.5 9 15-23 9-17 (50)
52 COG1922 WecG Teichoic acid bio 31.5 59 0.0013 23.3 2.9 36 14-50 115-150 (253)
53 KOG0700|consensus 31.4 30 0.00066 26.4 1.5 16 32-47 96-111 (390)
54 COG0482 TrmU Predicted tRNA(5- 29.4 55 0.0012 24.6 2.5 32 8-41 3-34 (356)
55 COG1654 BirA Biotin operon rep 29.2 91 0.002 18.4 3.0 25 21-45 34-59 (79)
56 PRK00654 glgA glycogen synthas 28.6 96 0.0021 22.9 3.7 33 16-48 16-48 (466)
57 PF01738 DLH: Dienelactone hyd 28.2 1.2E+02 0.0025 19.7 3.7 34 14-48 21-54 (218)
58 PF09337 zf-H2C2: His(2)-Cys(2 27.7 37 0.0008 17.5 1.0 14 17-30 22-35 (39)
59 cd01011 nicotinamidase Nicotin 27.2 1E+02 0.0023 20.2 3.4 29 20-48 149-177 (196)
60 smart00481 POLIIIAc DNA polyme 26.1 1E+02 0.0022 16.5 2.7 20 23-42 17-36 (67)
61 cd00008 53EXOc 5'-3' exonuclea 25.9 1.6E+02 0.0035 20.2 4.3 40 2-41 90-131 (240)
62 PLN02621 nicotinamidase 25.8 1E+02 0.0023 20.2 3.2 28 20-47 138-165 (197)
63 PF08175 SspO: Small acid-solu 25.5 21 0.00045 19.9 -0.2 8 16-23 9-16 (51)
64 COG0048 RpsL Ribosomal protein 25.4 17 0.00036 23.8 -0.7 32 19-50 51-82 (129)
65 PF09039 HTH_Tnp_Mu_2: Mu DNA 25.4 65 0.0014 20.0 2.0 22 16-37 48-69 (108)
66 COG0047 PurL Phosphoribosylfor 25.3 97 0.0021 22.1 3.1 27 23-49 70-96 (231)
67 COG1335 PncA Amidases related 25.1 1.2E+02 0.0025 19.7 3.3 45 4-48 126-172 (205)
68 COG2071 Predicted glutamine am 24.4 69 0.0015 23.0 2.2 28 20-47 93-120 (243)
69 COG3222 Uncharacterized protei 24.2 92 0.002 21.9 2.7 19 15-33 113-131 (211)
70 KOG1780|consensus 24.1 40 0.00088 20.2 0.8 19 32-50 22-40 (77)
71 TIGR03570 NeuD_NnaD sugar O-ac 23.0 1.6E+02 0.0034 18.4 3.5 30 18-47 6-35 (201)
72 PF04170 NlpE: NlpE N-terminal 22.9 33 0.00072 20.1 0.3 8 14-21 8-15 (87)
73 cd01014 nicotinamidase_related 22.9 1.2E+02 0.0025 19.1 2.9 30 20-49 110-139 (155)
74 PF05687 DUF822: Plant protein 22.7 65 0.0014 21.6 1.7 22 13-37 41-62 (150)
75 PTZ00331 alpha/beta hydrolase; 22.6 1.5E+02 0.0032 19.9 3.5 30 20-49 157-186 (212)
76 PF13507 GATase_5: CobB/CobQ-l 22.5 30 0.00064 24.6 0.1 27 24-50 79-106 (259)
77 cd06533 Glyco_transf_WecG_TagA 22.4 1.2E+02 0.0026 19.7 2.9 35 15-50 54-88 (171)
78 cd08060 MPN_UPF0172 Mov34/MPN/ 22.4 1.5E+02 0.0033 19.9 3.5 38 13-50 48-85 (182)
79 PF05159 Capsule_synth: Capsul 21.2 1.1E+02 0.0024 20.8 2.7 23 24-46 14-36 (269)
80 COG5074 t-SNARE complex subuni 21.2 57 0.0012 23.8 1.3 24 17-41 234-257 (280)
81 PF11813 DUF3334: Protein of u 21.1 69 0.0015 22.8 1.7 29 21-49 36-65 (229)
82 PHA02944 hypothetical protein; 20.9 85 0.0019 21.6 2.0 22 32-53 120-143 (180)
83 PF00009 GTP_EFTU: Elongation 20.8 57 0.0012 20.9 1.1 39 8-47 69-107 (188)
84 PRK03692 putative UDP-N-acetyl 20.6 1.4E+02 0.0031 20.8 3.2 31 14-46 112-142 (243)
85 cd01522 RHOD_1 Member of the R 20.6 1.3E+02 0.0028 18.0 2.6 23 27-49 81-104 (117)
86 PRK05844 pyruvate flavodoxin o 20.2 1.8E+02 0.0038 19.1 3.4 27 16-42 11-37 (186)
No 1
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.8e-17 Score=121.10 Aligned_cols=52 Identities=38% Similarity=0.555 Sum_probs=49.9
Q ss_pred CCCccchHHHHHHHHHHHHcCCEEEEEeccccccccCCCceEEcCccccccccc
Q psy5988 14 LLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~ 67 (68)
||||||||+||+++|++.+.|+|||||++||+||+++ +++++++++++.+++
T Consensus 12 GdaPGmNa~Iravvr~a~~~g~eV~Gi~~Gy~GL~~~--~i~~l~~~~v~~~~~ 63 (347)
T COG0205 12 GDAPGMNAVIRAVVRTAIKEGLEVFGIYNGYLGLLEG--DIKPLTREDVDDLIN 63 (347)
T ss_pred CCCccHHHHHHHHHHHHHHcCCEEEEEecchhhhcCC--cceeccccchhHHHh
Confidence 6999999999999999999999999999999999999 899999999998875
No 2
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=99.65 E-value=4.9e-17 Score=127.73 Aligned_cols=55 Identities=60% Similarity=0.991 Sum_probs=51.8
Q ss_pred CCCccchHHHHHHHHHHHHcCCEEEEEeccccccccCCCceEEcCcccccccccC
Q psy5988 14 LLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~~ 68 (68)
||||||||+||++||+|+++|++||||++||+||++++.++++++|++|++|+++
T Consensus 13 GdapGmNaaIravvr~a~~~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~ 67 (762)
T cd00764 13 GDAQGMNAAVRAVVRMGIYVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQE 67 (762)
T ss_pred CCchhHhHHHHHHHHHHHHCCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhC
Confidence 6999999999999999999999999999999999998768999999999998763
No 3
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=99.63 E-value=1.8e-16 Score=114.26 Aligned_cols=52 Identities=44% Similarity=0.639 Sum_probs=49.8
Q ss_pred CCCccchHHHHHHHHHHHHcCCEEEEEeccccccccCCCceEEcCccccccccc
Q psy5988 14 LLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~ 67 (68)
|||||||++||+++++|.++|++|||+++||+||+++ ++.+|+|+++++|.+
T Consensus 10 G~apGmNa~i~~vv~~a~~~g~~v~G~~~G~~GL~~~--~~~~l~~~~v~~~~~ 61 (317)
T cd00763 10 GDAPGMNAAIRGVVRSAIAEGLEVYGIRDGYAGLIAG--DIVPLDRYSVSDIIN 61 (317)
T ss_pred CCcHHHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCC--CeEeCCHHHhhhHHh
Confidence 6999999999999999999999999999999999998 999999999999865
No 4
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=99.62 E-value=2.3e-16 Score=123.66 Aligned_cols=55 Identities=64% Similarity=1.054 Sum_probs=51.9
Q ss_pred CCCccchHHHHHHHHHHHHcCCEEEEEeccccccccCCCceEEcCcccccccccC
Q psy5988 14 LLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~~ 68 (68)
||||||||+||+++++|+++|++||||++||+||+++++++++|+|++|++|+++
T Consensus 10 GdapGmNaaIravv~~a~~~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~ 64 (745)
T TIGR02478 10 GDAQGMNAAVRAVVRMAIYVGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSL 64 (745)
T ss_pred CCcHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhC
Confidence 6999999999999999999999999999999999998778999999999998753
No 5
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=99.62 E-value=2.8e-16 Score=112.62 Aligned_cols=52 Identities=46% Similarity=0.717 Sum_probs=49.7
Q ss_pred CCCccchHHHHHHHHHHHHcCCEEEEEeccccccccCCCceEEcCccccccccc
Q psy5988 14 LLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~ 67 (68)
+||||||++||++++++.++|++|||+++||+||+++ ++++|+|+++++|.+
T Consensus 9 G~apG~Na~i~~vv~~a~~~g~~v~G~~~G~~GL~~~--~~~~l~~~~v~~~~~ 60 (301)
T TIGR02482 9 GDAPGMNAAIRAVVRTAIYHGFEVYGIRRGYKGLING--EIKPLESKNVSGIIH 60 (301)
T ss_pred CCcHHHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCC--CeEeCCHHHHhhHHh
Confidence 6999999999999999998899999999999999998 999999999999875
No 6
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=99.62 E-value=3.6e-16 Score=110.86 Aligned_cols=52 Identities=40% Similarity=0.749 Sum_probs=48.2
Q ss_pred CCCccchHHHHHHHHHHHHcCCEEEEEeccccccccCCCceEEcCccccccccc
Q psy5988 14 LLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~ 67 (68)
+||||||++|++++++|.++|++|||+++||+||+++ ++.+++|+++++|.+
T Consensus 10 G~apG~Na~i~~~v~~a~~~g~~v~g~~~G~~GL~~~--~~~~l~~~~v~~~~~ 61 (282)
T PF00365_consen 10 GDAPGMNAAIRGVVRYAIRRGWEVYGIRNGFEGLLNG--DIIELTWEDVRGIIN 61 (282)
T ss_dssp S--TTHHHHHHHHHHHHHHTTSEEEEETTHHHHHHHC--TEEEECGGGGTTGGG
T ss_pred CCchhhhHHHHHHHHHHHhcCCEEEEEEccCccceee--eEEeecccCcccccc
Confidence 6999999999999999999999999999999999999 999999999999875
No 7
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=99.61 E-value=2.5e-16 Score=123.75 Aligned_cols=58 Identities=40% Similarity=0.685 Sum_probs=53.0
Q ss_pred cCCCC----CCCccchHHHHHHHHHHHHcCCEEEEEeccccccccCCCceEEcCcccccccccC
Q psy5988 9 LPINL----LLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68 (68)
Q Consensus 9 ~~~~~----~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~~ 68 (68)
++|++ ||||||||+||++|++|+++|++||||++||+||+++ ++.+|+|.+|++|+++
T Consensus 390 ~~IaIltsGG~apGmNaairavv~~a~~~g~~v~gi~~G~~GL~~~--~~~~l~~~~v~~~~~~ 451 (762)
T cd00764 390 LNIAIVNVGAPAAGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAKG--QIVELGWIDVGGWTGR 451 (762)
T ss_pred cEEEEEecCCCchhHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCC--CcccCCHHHHHHHHhC
Confidence 55555 4999999999999999999999999999999999998 8999999999998753
No 8
>PLN02884 6-phosphofructokinase
Probab=99.61 E-value=3.4e-16 Score=116.20 Aligned_cols=59 Identities=22% Similarity=0.270 Sum_probs=50.4
Q ss_pred cCCCC----CCCccchHHHHHHHHHHHHcCC-EEEEEeccccccccCCCceEEcCccccccccc
Q psy5988 9 LPINL----LLFAGMNAAVRACVRMGIYLGC-KVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67 (68)
Q Consensus 9 ~~~~~----~dapGmNaaIRavvr~a~~~G~-eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~ 67 (68)
++|++ |||||||+|||++|+++..+|+ +|||+++||+||+++.....+|+|++|++|.+
T Consensus 54 ~rIaIltsGGdaPGmNa~Iravv~~a~~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~ 117 (411)
T PLN02884 54 VKAAIVTCGGLCPGLNDVIRQIVFTLEIYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHL 117 (411)
T ss_pred eEEEEEcCCCCCccHhHHHHHHHHHHHHcCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHh
Confidence 45555 5999999999999999998999 89999999999999822256688999998875
No 9
>PRK03202 6-phosphofructokinase; Provisional
Probab=99.58 E-value=1.1e-15 Score=110.21 Aligned_cols=52 Identities=46% Similarity=0.668 Sum_probs=49.7
Q ss_pred CCCccchHHHHHHHHHHHHcCCEEEEEeccccccccCCCceEEcCccccccccc
Q psy5988 14 LLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~ 67 (68)
+||||||++||++++++...|++|||+++||+||+++ ++.+|+|+++++|.+
T Consensus 11 G~apG~Na~i~~~~~~~~~~g~~v~g~~~G~~GL~~~--~~~~l~~~~v~~~~~ 62 (320)
T PRK03202 11 GDAPGMNAAIRAVVRTAISEGLEVYGIYDGYAGLLEG--DIVKLDLKSVSDIIN 62 (320)
T ss_pred CCcHHHHHHHHHHHHHHHHCCCeEEEEecChhhhcCC--CEEECCHHHHhhHHh
Confidence 6999999999999999999999999999999999998 999999999998865
No 10
>PRK14071 6-phosphofructokinase; Provisional
Probab=99.57 E-value=1.4e-15 Score=111.01 Aligned_cols=60 Identities=25% Similarity=0.339 Sum_probs=52.5
Q ss_pred cCCCC----CCCccchHHHHHHHHHHHH-cCCEEEEEeccccccccCCCceEEcCcccccccccC
Q psy5988 9 LPINL----LLFAGMNAAVRACVRMGIY-LGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68 (68)
Q Consensus 9 ~~~~~----~dapGmNaaIRavvr~a~~-~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~~ 68 (68)
++|++ |||||||++||+++++|.+ +|++|||+++||+||+++..++.+|+|++|++|.++
T Consensus 5 ~~I~IltsGG~apGmNa~i~~vv~~a~~~~g~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~ 69 (360)
T PRK14071 5 KRIGILTSGGDCAGLNAVIRAVVHRARGTYGWEVIGIRDATQGLMARPPQYIELDLDQVDDLLRM 69 (360)
T ss_pred CEEEEECCCCCchhHHHHHHHHHHHHHhcCCCEEEEEecChHHHhcCCCCeEECCHHHHhhHHhC
Confidence 35554 5999999999999999997 499999999999999997557999999999998753
No 11
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=99.57 E-value=2.2e-15 Score=108.99 Aligned_cols=52 Identities=50% Similarity=0.744 Sum_probs=49.6
Q ss_pred CCCccchHHHHHHHHHHHHcCCEEEEEeccccccccCCCceEEcCccccccccc
Q psy5988 14 LLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~ 67 (68)
+||||||++||++++++..+|++|||+++||+||+++ ++.+++|+++++|.+
T Consensus 10 G~apG~N~~i~~~v~~~~~~g~~v~G~~~G~~GL~~~--~~~~l~~~~v~~~~~ 61 (338)
T cd00363 10 GDAPGMNAAIRGVVRSAIAEGLEVYGIYEGYAGLVEG--DIKELDWESVSDIIN 61 (338)
T ss_pred CCchhHHHHHHHHHHHHHHCCCEEEEEecChHHhCCC--CeEeCCHHHhcchhh
Confidence 6999999999999999999999999999999999999 999999999998865
No 12
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=99.56 E-value=1.4e-15 Score=109.76 Aligned_cols=52 Identities=31% Similarity=0.553 Sum_probs=48.6
Q ss_pred CCCccchHHHHHHHHHHH-HcCCEEEEEeccccccccCCCceEEc-Cccccccccc
Q psy5988 14 LLFAGMNAAVRACVRMGI-YLGCKVFFIKEGYQGMVDGGDNIVEA-NWSSVSSIIH 67 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~-~~G~eV~Gi~~Gy~GLi~~~~~i~~L-~~~~V~~i~~ 67 (68)
+||||||++||+++++|+ ++|++|||+++||+||+++ ++.++ +|+++++|.+
T Consensus 9 G~apGmN~~i~~~v~~a~~~~g~~v~g~~~G~~GL~~~--~~~~l~~~~~v~~~~~ 62 (324)
T TIGR02483 9 GDCPGLNAVIRGVVRRAIAEYGWEVIGIRDGWRGLLEG--DTVPLLDLEDVRGILP 62 (324)
T ss_pred CCcHHHHHHHHHHHHHHHHcCCceEEEEccCHHHhCCC--CeEecCCHHHHHHHHh
Confidence 699999999999999998 5699999999999999998 89999 9999998865
No 13
>PLN02564 6-phosphofructokinase
Probab=99.56 E-value=2.3e-15 Score=113.80 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=48.1
Q ss_pred CCCccchHHHHHHHHHHH-HcC-CEEEEEeccccccccCCCceEEcCcccccccccC
Q psy5988 14 LLFAGMNAAVRACVRMGI-YLG-CKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~-~~G-~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~~ 68 (68)
|||||||++||++|+.+. .+| ++||||++||+||+++ ++.+|+|++|++|+++
T Consensus 97 Gd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~--~~i~Lt~~~V~~i~~~ 151 (484)
T PLN02564 97 GLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSR--NTIPLTPKVVNDIHKR 151 (484)
T ss_pred CCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCC--CeEeCCHHHhhcHhhC
Confidence 599999999999999886 446 7999999999999998 8999999999998753
No 14
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=99.55 E-value=2.3e-15 Score=112.72 Aligned_cols=55 Identities=31% Similarity=0.356 Sum_probs=48.5
Q ss_pred CCCccchHHHHHHHHHHHH-cC-CEEEEEecccccccc-CCCceEEcCcccccccccC
Q psy5988 14 LLFAGMNAAVRACVRMGIY-LG-CKVFFIKEGYQGMVD-GGDNIVEANWSSVSSIIHK 68 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~~-~G-~eV~Gi~~Gy~GLi~-~~~~i~~L~~~~V~~i~~~ 68 (68)
|||||||++||++|+.|.+ +| ++||||++||+||++ .++++.+|+|++|++|+++
T Consensus 90 G~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~ 147 (443)
T PRK06830 90 GLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEF 147 (443)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhC
Confidence 5999999999999999984 46 899999999999998 1238999999999998753
No 15
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=99.54 E-value=3.2e-15 Score=117.28 Aligned_cols=58 Identities=36% Similarity=0.615 Sum_probs=52.8
Q ss_pred cCCCC----CCCccchHHHHHHHHHHHHcCCEEEEEeccccccccCCCceEEcCcccccccccC
Q psy5988 9 LPINL----LLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68 (68)
Q Consensus 9 ~~~~~----~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~~ 68 (68)
++|++ |||||||++||+++++|+++|++||||++||+||+++ ++.+|+|.+|++|.++
T Consensus 390 ~rIaIltsGG~apGmNaair~vv~~a~~~g~~V~Gi~~G~~GL~~~--~~~~l~~~~v~~~~~~ 451 (745)
T TIGR02478 390 LRIAIIHVGAPAGGMNAATRSAVRYAIARGHTVIAIHNGFSGLARG--DVRELTWSDVEGWVGE 451 (745)
T ss_pred eEEEEEecCCCchhHHHHHHHHHHHHHhCCCEEEEEecChhhhccC--CeecCCHHHHHHHHhc
Confidence 45665 4999999999999999999999999999999999998 8999999999998753
No 16
>PRK14072 6-phosphofructokinase; Provisional
Probab=99.53 E-value=4.4e-15 Score=110.19 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=46.1
Q ss_pred CCCccchHHHHHHHHHHHHcC--CEEEEEeccccccccCCCceEEcCcccccc
Q psy5988 14 LLFAGMNAAVRACVRMGIYLG--CKVFFIKEGYQGMVDGGDNIVEANWSSVSS 64 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~~~G--~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~ 64 (68)
||||||||+||+++++|.++| ++|||+++||+||+++ ++.+|+..++++
T Consensus 13 GdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~--~~~~l~~~~~~~ 63 (416)
T PRK14072 13 GPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDE--DLIDLSKESDEA 63 (416)
T ss_pred CchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCC--CeeeCChhhHhH
Confidence 599999999999999999888 9999999999999999 899999877777
No 17
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=99.51 E-value=9.4e-15 Score=109.81 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=47.9
Q ss_pred CCCccchHHHHHHHHHHH-HcC-CEEEEEeccccccccCCCceEEcCccccccccc
Q psy5988 14 LLFAGMNAAVRACVRMGI-YLG-CKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~-~~G-~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~ 67 (68)
|||||||++||++|+.+. .++ ++|||+++||+||+++ ++.+|+|++|++|++
T Consensus 97 G~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~--~~i~Lt~~~V~~i~~ 150 (459)
T PTZ00286 97 GLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKE--DWIKLDPKDVKTIHR 150 (459)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCC--CeEECCHHHhhhHHh
Confidence 599999999999999998 344 7999999999999998 899999999999875
No 18
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=99.41 E-value=1.4e-13 Score=102.34 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=41.5
Q ss_pred CCCccchHHHHHHHHHHHH--cCCEEEEEeccccccccCCCceEEcCcc
Q psy5988 14 LLFAGMNAAVRACVRMGIY--LGCKVFFIKEGYQGMVDGGDNIVEANWS 60 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~~--~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~ 60 (68)
|||||||++||++++++.. .|++|||+++||+||+++ ++.+++..
T Consensus 13 GdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~--~~~~l~~~ 59 (403)
T PRK06555 13 GLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLG--DSIEITPA 59 (403)
T ss_pred CCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCC--CceeCChh
Confidence 5999999999999998864 799999999999999998 89988875
No 19
>KOG2440|consensus
Probab=99.41 E-value=1.3e-13 Score=107.41 Aligned_cols=55 Identities=62% Similarity=0.975 Sum_probs=52.0
Q ss_pred CCCccchHHHHHHHHHHHHcCCEEEEEeccccccccCCCceEEcCcccccccccC
Q psy5988 14 LLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~~ 68 (68)
+|+|||||++|+++|.+++.|+++|+|++||+||+++++.+++++|.+|+.|+++
T Consensus 6 gd~~gmnaavr~~vr~~i~~g~~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~l 60 (666)
T KOG2440|consen 6 GDSQGMNAAVRAVVRMGIYRGCKVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSL 60 (666)
T ss_pred CCCCCccHHHHHHHHhccccCceEEEEecccccccccccchhhcchhhhCCcccC
Confidence 7999999999999999999999999999999999998778999999999998763
No 20
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=99.30 E-value=1.5e-12 Score=99.58 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=51.3
Q ss_pred cCCCC----CCCccchHHHHHHHHHHHH--cCCEEEEEeccccccccCCCceEEcCccccccccc
Q psy5988 9 LPINL----LLFAGMNAAVRACVRMGIY--LGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67 (68)
Q Consensus 9 ~~~~~----~dapGmNaaIRavvr~a~~--~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~ 67 (68)
++||+ |||||||++|+++++++.. .+++|||+++||+||+++ ++.+|++++|+.+.+
T Consensus 68 ~rIgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~--~~~~Lt~~~v~~~~~ 130 (539)
T TIGR02477 68 LKIGVILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDN--NYVELTKELIDTYRN 130 (539)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCC--CeEeCCHHHHhHHHh
Confidence 57776 4999999999999999874 489999999999999998 999999999988765
No 21
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=99.28 E-value=1.9e-12 Score=99.25 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=49.9
Q ss_pred cCCCC----CCCccchHHHHHHHHHH--HHcCCEEEEEeccccccccCCCceEEcCccccccccc
Q psy5988 9 LPINL----LLFAGMNAAVRACVRMG--IYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67 (68)
Q Consensus 9 ~~~~~----~dapGmNaaIRavvr~a--~~~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~ 67 (68)
++||+ |||||||++|+++++++ .+.+++|||+++||+||+++ ++.+|+|++|++|.+
T Consensus 71 ~~IgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~--~~~~Lt~~~v~~~~~ 133 (555)
T PRK07085 71 LKVGVILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNG--KYIEITEEVIDEYRN 133 (555)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCC--CeEECCHHHHhHHHh
Confidence 45555 49999999999999854 46889999999999999999 999999999998865
No 22
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=99.28 E-value=2.3e-12 Score=99.76 Aligned_cols=57 Identities=9% Similarity=0.029 Sum_probs=51.2
Q ss_pred cCCCC----CCCccchHHHHHHHHHHHHc--CCEEEEEeccccccccCCCceEEcCccccccccc
Q psy5988 9 LPINL----LLFAGMNAAVRACVRMGIYL--GCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67 (68)
Q Consensus 9 ~~~~~----~dapGmNaaIRavvr~a~~~--G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~ 67 (68)
++||+ |||||||++|+++++++... +++|||+++||+||+++ ++.+||+++++++.+
T Consensus 80 ~rIgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~--~~v~Lt~~~v~~~~n 142 (610)
T PLN03028 80 VRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQ--KTLEITDDVLSTYKN 142 (610)
T ss_pred cEEEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCC--CeEECCHHHHHHHHh
Confidence 56776 49999999999999999854 79999999999999999 999999999988765
No 23
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=99.27 E-value=3.5e-12 Score=98.13 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=51.0
Q ss_pred cCCCC----CCCccchHHHHHHHHHHHH--cCCEEEEEeccccccccCCCceEEcCccccccccc
Q psy5988 9 LPINL----LLFAGMNAAVRACVRMGIY--LGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67 (68)
Q Consensus 9 ~~~~~----~dapGmNaaIRavvr~a~~--~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~ 67 (68)
++||+ |||||||++|+++++++.. .+++|||+++||+||+++ ++.+|++++++.+.+
T Consensus 97 ~~IGIv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~--~~v~Lt~~~v~~~~n 159 (568)
T PLN02251 97 LKIGVVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKC--KYVELTAEFIYPYRN 159 (568)
T ss_pred ceEEEECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCC--CeEECCHHHhhhhhh
Confidence 56776 5999999999999999974 489999999999999999 999999999987765
No 24
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=99.23 E-value=5.3e-12 Score=96.84 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=50.5
Q ss_pred cCCCC----CCCccchHHHHHHHHHHHH--cCCEEEEEeccccccccCCCceEEcCccccccccc
Q psy5988 9 LPINL----LLFAGMNAAVRACVRMGIY--LGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67 (68)
Q Consensus 9 ~~~~~----~dapGmNaaIRavvr~a~~--~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~ 67 (68)
++|++ |||||||++|+++++++.. .+++|||+++||+||+++ ++.+|++++++.+.+
T Consensus 73 ~~IgIl~SGG~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~--~~i~Lt~~~v~~~~~ 135 (550)
T cd00765 73 LKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKC--DYIELNAEYIQPYRN 135 (550)
T ss_pred CEEEEECCCCCcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCC--CeEECCHHHHhHHHh
Confidence 45555 4999999999999999874 489999999999999999 899999999988765
No 25
>PTZ00287 6-phosphofructokinase; Provisional
Probab=99.22 E-value=6.6e-12 Score=103.58 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=51.6
Q ss_pred cCCCC----CCCccchHHHHHHHHHHHH--cCCEEEEEeccccccccCCCceEEcCccccccccc
Q psy5988 9 LPINL----LLFAGMNAAVRACVRMGIY--LGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67 (68)
Q Consensus 9 ~~~~~----~dapGmNaaIRavvr~a~~--~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~ 67 (68)
++||+ |||||||++||+++++|.. .|++|||+++||+||+++ ++.+|+|.++++|.+
T Consensus 178 ~rIgIl~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~--~~veLt~~~V~~~~n 240 (1419)
T PTZ00287 178 LKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSK--NYVTITDSLMNRFRN 240 (1419)
T ss_pred eEEEEEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCC--CeEECCHHHHhhHHh
Confidence 56776 4999999999999999974 489999999999999998 899999999998865
No 26
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=99.16 E-value=1.8e-11 Score=100.60 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=51.5
Q ss_pred cCCCC----CCCccchHHHHHHHHHHH--HcCCEEEEEeccccccccCCCceEEcCccccccccc
Q psy5988 9 LPINL----LLFAGMNAAVRACVRMGI--YLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67 (68)
Q Consensus 9 ~~~~~----~dapGmNaaIRavvr~a~--~~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~ 67 (68)
++||+ |||||||+|||++++.+. +.+++|||+++||+||+++ ++.+|++++|++|.+
T Consensus 103 krIGILtSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~--~~ieLt~~~V~~i~n 165 (1328)
T PTZ00468 103 RRIGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSE--RYRELTEDDINGILN 165 (1328)
T ss_pred CEEEEECcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCC--CeEeCCHHHHHHHHh
Confidence 57776 599999999999999976 6789999999999999999 999999999988765
No 27
>PTZ00287 6-phosphofructokinase; Provisional
Probab=98.87 E-value=8.7e-10 Score=91.35 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=47.7
Q ss_pred cCCCC----CCCccchHHHHHHHHHHH-HcCCEEEEEeccccccccCCCceEEcCcccccccccC
Q psy5988 9 LPINL----LLFAGMNAAVRACVRMGI-YLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68 (68)
Q Consensus 9 ~~~~~----~dapGmNaaIRavvr~a~-~~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~~ 68 (68)
++||| |||||||+|||++++.+. .+|++ +| ++||.||+++ ++.+||.++|+++.++
T Consensus 837 ~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~g~~-~g-f~G~~GLl~~--~~i~Lt~~~V~~i~n~ 897 (1419)
T PTZ00287 837 IKIGIVFLSRQAPGAMNVLCGLYRRLKLLKGVC-IA-FYGLYGLLNN--KYIIIDDDNIAKHVNQ 897 (1419)
T ss_pred cEEEEECcCCCcHhHHHHHHHHHHHHHHhCCeE-EE-EeCchhhcCC--CeEECCHHHHhhHHHc
Confidence 56776 599999999999999997 45885 55 5599999999 9999999999998753
No 28
>KOG2440|consensus
Probab=98.41 E-value=9.3e-08 Score=75.05 Aligned_cols=58 Identities=26% Similarity=0.404 Sum_probs=52.5
Q ss_pred cCCCCC----CCccchHHHHHHHHHHHHcCCEEEEEeccccccccCCCceEEcCcccccccccC
Q psy5988 9 LPINLL----LFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68 (68)
Q Consensus 9 ~~~~~~----dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~~~~i~~L~~~~V~~i~~~ 68 (68)
+|++++ ++.|||+++|++++.|...|.++|++.+||+||..+ .+.++.|.||..|..+
T Consensus 373 ~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~d--~~~~~~~~dv~~w~~~ 434 (666)
T KOG2440|consen 373 IPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAKD--ALGELIWKDVGLWLSQ 434 (666)
T ss_pred eccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhhh--hhhhhHHHHhhccccc
Confidence 455554 899999999999999999999999999999999987 8999999999999764
No 29
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=98.01 E-value=4.1e-06 Score=69.77 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=43.9
Q ss_pred CCCCCccchHHHHHHHHHHHHcCCEEEEEeccccccccCCCceEEcC----ccccccccc
Q psy5988 12 NLLLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEAN----WSSVSSIIH 67 (68)
Q Consensus 12 ~~~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~~~~i~~L~----~~~V~~i~~ 67 (68)
+-++|||+|++|.+++..+...| |+|+++||.||+++......++ .++++.+++
T Consensus 683 ~g~~aPG~NnVI~g~~~~~~~~g--vig~~~G~~~L~~~~~~~v~l~~~~~~~~~~~~~n 740 (1328)
T PTZ00468 683 SCLSTPGTQNVICGLVNGLPSLK--QLIVFKSLSDFYEGKALKVDLTSEGSLEFFENSLN 740 (1328)
T ss_pred cCCCCccHHHHHHHHHHHHHhCC--cEEEEechhHHhcCCceEEecccchhHHHHHHHHh
Confidence 34699999999999999999888 9999999999999954555565 456665553
No 30
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=82.60 E-value=1 Score=29.18 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=39.0
Q ss_pred CCCCCCcc----chHHHHHHHHHHHHcCCEEEEE--------------ecc--ccccccCCCceEEcCcccccccc
Q psy5988 11 INLLLFAG----MNAAVRACVRMGIYLGCKVFFI--------------KEG--YQGMVDGGDNIVEANWSSVSSII 66 (68)
Q Consensus 11 ~~~~dapG----mNaaIRavvr~a~~~G~eV~Gi--------------~~G--y~GLi~~~~~i~~L~~~~V~~i~ 66 (68)
+|+++..+ -+.+++.+.+....+|.+++|- .++ |.||.-+.++-.+++.+.++.|.
T Consensus 84 fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~~~~~~~~~~~f~gl~~~~~~~~~~~~~r~~~w~ 159 (167)
T TIGR01752 84 FGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDEDNQPDLTEERIEKWV 159 (167)
T ss_pred EecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccccchheeCCCEEEEEEecCCCchhhhHHHHHHHH
Confidence 45666643 3667787777776789988884 345 77777665567788887777775
No 31
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=70.90 E-value=5.8 Score=26.73 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=31.7
Q ss_pred hhhcCCCCCCCccchHHHHHHHHHHHHcCCEEEEEe
Q psy5988 6 LNLLPINLLLFAGMNAAVRACVRMGIYLGCKVFFIK 41 (68)
Q Consensus 6 ~~~~~~~~~dapGmNaaIRavvr~a~~~G~eV~Gi~ 41 (68)
...=+||++-|-||..--|.+++...++|.+|+.+-
T Consensus 53 mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV~ 88 (157)
T PF08901_consen 53 MGYKKIGIAFCIGLRKEARILAKILEANGFEVYSVC 88 (157)
T ss_pred cCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEEE
Confidence 344589999999999999999999989999999774
No 32
>PF01328 Peroxidase_2: Peroxidase, family 2; InterPro: IPR000028 Chloroperoxidase (CPO), also known as Heme haloperoxidase, is a ~250 residue heme-containing glycoprotein that is secreted by various fungi. Chloroperoxidase was first identified in Caldariomyces fumago where it catalyzes the hydrogen peroxide-dependent chlorination of cyclopentanedione during the biosynthesis of the antibiotic caldarioymcin. Additionally, heme haloperoxidase catalyzes the iodination and bromination of a wide range of substrates. Besides performing H2O2-dependent halogenation reactions, the enzyme catalyzes dehydrogenation reactions. Chloroperoxidase also functions as a catalase, facilitating the decomposition of hydrogen peroxide to oxygen and water. Furthermore, chloroperoxidase catalyzes P450-like oxygen insertion reactions. The capability of chloroperoxidase to perform these diverse reactions makes it one of the most versatile of all known heme proteins [, ]. Despite functional similarities with other heme enzymes, chloroperoxidase folds into a novel tertiary structure dominated by eight helical segments []. Structurally, chloroperoxidase is unique, but it shares features with both peroxidases and P450 enzymes. As in cytochrome P450 enzymes, the proximal heme ligand is a cysteine, but similar to peroxidases, the distal side of the heme is polar. However, unlike other peroxidases, the normally conserved distal arginine is lacking and the catalytic acid base is a glutamic acid and not a histidine [].; GO: 0004601 peroxidase activity; PDB: 2J5M_A 2J19_A 2CIW_A 2CJ0_A 2CIV_A 2CPO_A 1CPO_A 2CJ2_A 2J18_A 2CIZ_A ....
Probab=66.24 E-value=2 Score=31.57 Aligned_cols=9 Identities=22% Similarity=0.202 Sum_probs=6.1
Q ss_pred CCCccchHH
Q psy5988 14 LLFAGMNAA 22 (68)
Q Consensus 14 ~dapGmNaa 22 (68)
+||||||+.
T Consensus 48 gPCPgLNtL 56 (317)
T PF01328_consen 48 GPCPGLNTL 56 (317)
T ss_dssp -S-HHHHHH
T ss_pred CCCccHHHH
Confidence 589999985
No 33
>PRK02984 sspO acid-soluble spore protein O; Provisional
Probab=51.89 E-value=6 Score=21.79 Aligned_cols=8 Identities=63% Similarity=0.825 Sum_probs=6.3
Q ss_pred CccchHHH
Q psy5988 16 FAGMNAAV 23 (68)
Q Consensus 16 apGmNaaI 23 (68)
-||||+|-
T Consensus 10 ~~GmN~A~ 17 (49)
T PRK02984 10 IPGMNAAS 17 (49)
T ss_pred cccchhhh
Confidence 58999874
No 34
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=49.50 E-value=15 Score=27.35 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=21.7
Q ss_pred cCCCCCCCccchHHHHHHHHHHHHcCCEEEEEe
Q psy5988 9 LPINLLLFAGMNAAVRACVRMGIYLGCKVFFIK 41 (68)
Q Consensus 9 ~~~~~~dapGmNaaIRavvr~a~~~G~eV~Gi~ 41 (68)
|+|-||.+-|.-+++-|.... +.|++|.|++
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk--~~G~~V~Gv~ 31 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLK--EQGYDVIGVT 31 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHH--HCT-EEEEEE
T ss_pred CeEEEEccCCHHHHHHHHHHH--hhcccceEEE
Confidence 567788999988888776543 7999999986
No 35
>PRK11440 putative hydrolase; Provisional
Probab=46.80 E-value=29 Score=22.52 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHcCCEEEEEecccccc
Q psy5988 20 NAAVRACVRMGIYLGCKVFFIKEGYQGM 47 (68)
Q Consensus 20 NaaIRavvr~a~~~G~eV~Gi~~Gy~GL 47 (68)
|-||.+-++.|...|++|+-+.|+=...
T Consensus 132 ~~CV~~Ta~~A~~~gy~v~vv~Da~as~ 159 (188)
T PRK11440 132 NIGVESTARNAWELGFNLVIAEDACSAA 159 (188)
T ss_pred hHHHHHHHHHHHHCCCEEEEechhhcCC
Confidence 4599999999999999999999876654
No 36
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=46.35 E-value=31 Score=21.39 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHHHcCCEEEEEeccccc
Q psy5988 19 MNAAVRACVRMGIYLGCKVFFIKEGYQG 46 (68)
Q Consensus 19 mNaaIRavvr~a~~~G~eV~Gi~~Gy~G 46 (68)
-|.||.+-++.|...|++|+-+.|.=..
T Consensus 120 t~~CV~~T~~~a~~~G~~v~vi~Da~~s 147 (161)
T cd00431 120 TDICVLATARDALDLGYRVIVVEDACAT 147 (161)
T ss_pred cChhHHHHHHHHHHCCCEEEEehhhccc
Confidence 3678999999999999999998876544
No 37
>KOG1615|consensus
Probab=44.15 E-value=24 Score=25.03 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCEEEEEeccccccccC
Q psy5988 22 AVRACVRMGIYLGCKVFFIKEGYQGMVDG 50 (68)
Q Consensus 22 aIRavvr~a~~~G~eV~Gi~~Gy~GLi~~ 50 (68)
=||.+|......|.+||-+-+||.-|++.
T Consensus 92 Gi~eLv~~L~~~~~~v~liSGGF~~~i~~ 120 (227)
T KOG1615|consen 92 GIRELVSRLHARGTQVYLISGGFRQLIEP 120 (227)
T ss_pred CHHHHHHHHHHcCCeEEEEcCChHHHHHH
Confidence 37888988888999999999999999864
No 38
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=42.92 E-value=35 Score=23.04 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=30.6
Q ss_pred hhhhcCCCCCCCccc--hHHHHHHHHHHHHcCCEEEEEecccccc
Q psy5988 5 VLNLLPINLLLFAGM--NAAVRACVRMGIYLGCKVFFIKEGYQGM 47 (68)
Q Consensus 5 ~~~~~~~~~~dapGm--NaaIRavvr~a~~~G~eV~Gi~~Gy~GL 47 (68)
.|+...|.-.---|+ |-||.+-++.|.+.|++|+-+.|+-...
T Consensus 145 ~Lr~~gI~~lvi~Gv~T~~CV~sTar~A~~~Gy~v~vv~Da~a~~ 189 (226)
T TIGR03614 145 MLRARGIRNLVFTGIATNVCVESTLRDGFHLEYFGVVLEDATHQA 189 (226)
T ss_pred HHHHCCCCEEEEeccCccHhHHHHHHHHHHCCCEEEEechhccCC
Confidence 444444442223333 6799999999999999999999986544
No 39
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=42.71 E-value=45 Score=21.05 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHcCCEEEEEeccccccc
Q psy5988 20 NAAVRACVRMGIYLGCKVFFIKEGYQGMV 48 (68)
Q Consensus 20 NaaIRavvr~a~~~G~eV~Gi~~Gy~GLi 48 (68)
|.|+.+-++.|...|++|+-+.|+=...-
T Consensus 99 ~~CV~~Ta~~a~~~g~~v~v~~Da~as~~ 127 (157)
T cd01012 99 HVCVLQTALDLLEEGYEVFVVADACGSRS 127 (157)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeeCCCCCC
Confidence 56999999999999999999998876653
No 40
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=42.24 E-value=33 Score=21.46 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHcCCEEEEEecccccc
Q psy5988 20 NAAVRACVRMGIYLGCKVFFIKEGYQGM 47 (68)
Q Consensus 20 NaaIRavvr~a~~~G~eV~Gi~~Gy~GL 47 (68)
+.||.+-++.|.+.|++|+-+.|+=.+.
T Consensus 123 ~~CV~~Ta~~a~~~g~~v~v~~Da~~~~ 150 (174)
T PF00857_consen 123 DVCVLATARDAFDRGYRVIVVEDACASY 150 (174)
T ss_dssp TTHHHHHHHHHHHTT-EEEEEEEEEEBS
T ss_pred CcEEehhHHHHHHCCCEEEEEChhhcCC
Confidence 5688999999999999999998875554
No 41
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=41.77 E-value=37 Score=22.56 Aligned_cols=28 Identities=4% Similarity=0.074 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHcCCEEEEEecccccc
Q psy5988 20 NAAVRACVRMGIYLGCKVFFIKEGYQGM 47 (68)
Q Consensus 20 NaaIRavvr~a~~~G~eV~Gi~~Gy~GL 47 (68)
|-|+.+-++.|...|++|+-+.|+-...
T Consensus 153 ~~CV~~Ta~~A~~~Gy~v~vv~Da~as~ 180 (203)
T cd01013 153 HIGCLSTAVDAFMRDIQPFVVADAIADF 180 (203)
T ss_pred ChhHHHHHHHHHHCCCeEEEeccccCCC
Confidence 6789999999999999999999886654
No 42
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=39.52 E-value=51 Score=21.78 Aligned_cols=43 Identities=28% Similarity=0.392 Sum_probs=31.5
Q ss_pred hhhhcCCCCCCCccc--hHHHHHHHHHHHHcCCEEEEEecccccc
Q psy5988 5 VLNLLPINLLLFAGM--NAAVRACVRMGIYLGCKVFFIKEGYQGM 47 (68)
Q Consensus 5 ~~~~~~~~~~dapGm--NaaIRavvr~a~~~G~eV~Gi~~Gy~GL 47 (68)
.|+...|.=.-.-|+ |-||.+-++.|...|++|+-+.|+-.+.
T Consensus 136 ~L~~~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~ 180 (212)
T PRK11609 136 WLREHGITELIVMGLATDYCVKFTVLDALALGYQVNVITDGCRGV 180 (212)
T ss_pred HHHHcCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccCCC
Confidence 344444443333444 4699999999999999999999988775
No 43
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=39.49 E-value=50 Score=21.26 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHcCCEEEEEeccccc
Q psy5988 20 NAAVRACVRMGIYLGCKVFFIKEGYQG 46 (68)
Q Consensus 20 NaaIRavvr~a~~~G~eV~Gi~~Gy~G 46 (68)
|-|+.+-++.|...|++|+-+.|.=..
T Consensus 125 ~~CV~~Ta~~A~~~Gy~v~vv~Da~a~ 151 (179)
T cd01015 125 SGCIRATAVDAMQHGFRPIVVRECVGD 151 (179)
T ss_pred cHhHHHHHHHHHHCCCeEEEeeccccC
Confidence 679999999999999999999887554
No 44
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=38.03 E-value=27 Score=22.34 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCEEEEEecccccccc
Q psy5988 22 AVRACVRMGIYLGCKVFFIKEGYQGMVD 49 (68)
Q Consensus 22 aIRavvr~a~~~G~eV~Gi~~Gy~GLi~ 49 (68)
-++.-+|.+...|..+|++-.||+=|-+
T Consensus 30 ~~~~~I~~~~~~G~pi~aeCGG~~~Lg~ 57 (158)
T PF07685_consen 30 GLKEAIREAAEAGGPIYAECGGYQYLGE 57 (158)
T ss_pred CHHHHHHHHHHcCCcEEEEchHHHHHHH
Confidence 3444455555779999999999987754
No 45
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=36.45 E-value=72 Score=19.81 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=22.2
Q ss_pred CCccchHHHHHHHHHHHHcCCEEEEEe
Q psy5988 15 LFAGMNAAVRACVRMGIYLGCKVFFIK 41 (68)
Q Consensus 15 dapGmNaaIRavvr~a~~~G~eV~Gi~ 41 (68)
-+.|=|+.+-.+++.|.++|..++++-
T Consensus 111 S~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 111 SNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp ESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 467999999999999999999999874
No 46
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=35.01 E-value=34 Score=23.21 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=20.4
Q ss_pred cCCCCCCCccchHHHHHHHHHHH-HcCCEEEEE
Q psy5988 9 LPINLLLFAGMNAAVRACVRMGI-YLGCKVFFI 40 (68)
Q Consensus 9 ~~~~~~dapGmNaaIRavvr~a~-~~G~eV~Gi 40 (68)
|+|++...||.| +-+.+.++.. ..|.++.-+
T Consensus 1 ~~v~Vl~~~G~n-~~~d~~~a~~~~~G~~~~~v 32 (219)
T PRK03619 1 MKVAVIVFPGSN-CDRDMARALRDLLGAEPEYV 32 (219)
T ss_pred CEEEEEecCCcC-hHHHHHHHHHhcCCCeEEEE
Confidence 578899999999 4444444433 457766555
No 47
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=34.22 E-value=49 Score=18.44 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCCEEEE
Q psy5988 22 AVRACVRMGIYLGCKVFF 39 (68)
Q Consensus 22 aIRavvr~a~~~G~eV~G 39 (68)
....-|-.+++.||+.||
T Consensus 16 ~fc~rVt~aL~~GW~l~G 33 (54)
T PF08410_consen 16 AFCHRVTEALNEGWQLYG 33 (54)
T ss_pred HHHHHHHHHHHcCCEecC
Confidence 334446667799999876
No 48
>PRK12359 flavodoxin FldB; Provisional
Probab=33.74 E-value=44 Score=22.17 Aligned_cols=57 Identities=11% Similarity=-0.057 Sum_probs=38.4
Q ss_pred CCCCCCcc----chHHHHHHHHHHHHcCCEEEEE--------------ec--c-ccccccCCCceEEcCccccccccc
Q psy5988 11 INLLLFAG----MNAAVRACVRMGIYLGCKVFFI--------------KE--G-YQGMVDGGDNIVEANWSSVSSIIH 67 (68)
Q Consensus 11 ~~~~dapG----mNaaIRavvr~a~~~G~eV~Gi--------------~~--G-y~GLi~~~~~i~~L~~~~V~~i~~ 67 (68)
.|++|..| .+.+++.+.+.....|.+++|- .+ + |-||.=+.+|-.++|.+.++.|..
T Consensus 85 FG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD~~nq~~~t~~ri~~W~~ 162 (172)
T PRK12359 85 YGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALDEVNQYDLSDERIQQWCE 162 (172)
T ss_pred EeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEcCCCchhhhHHHHHHHHH
Confidence 46777654 4788888888877788888763 31 3 566654444566778787777753
No 49
>KOG0407|consensus
Probab=32.59 E-value=28 Score=22.67 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=16.0
Q ss_pred CCCccchHHHHHHHHHHHH
Q psy5988 14 LLFAGMNAAVRACVRMGIY 32 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~~ 32 (68)
.|-||..+++|+++|+.+.
T Consensus 95 tpgpgaqsalralar~gmr 113 (139)
T KOG0407|consen 95 TPGPGAQSALRALARSGMR 113 (139)
T ss_pred CCCccHHHHHHHHHHhcce
Confidence 4789999999999997554
No 50
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.20 E-value=59 Score=22.28 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=22.1
Q ss_pred CCccchHHHHHHHHHHHHcCCEEE
Q psy5988 15 LFAGMNAAVRACVRMGIYLGCKVF 38 (68)
Q Consensus 15 dapGmNaaIRavvr~a~~~G~eV~ 38 (68)
++-|+|.-||.+++..-..|+.|+
T Consensus 35 ei~Gl~~~i~~~a~rlA~~Gy~v~ 58 (236)
T COG0412 35 EIFGLNPHIRDVARRLAKAGYVVL 58 (236)
T ss_pred cccCCchHHHHHHHHHHhCCcEEE
Confidence 788999999999999889999886
No 51
>TIGR02864 spore_sspO small, acid-soluble spore protein O. This model represents a minor (low-abundance) spore protein, designated SspO. It is found in a very limited subset of the already small group of endospore-forming bacteria, but these species include Oceanobacillus iheyensis, Geobacillus kaustophilus, Bacillus subtilis, B. halodurans, and B. cereus. This protein was previously called CotK.
Probab=31.68 E-value=21 Score=19.76 Aligned_cols=9 Identities=56% Similarity=0.604 Sum_probs=6.6
Q ss_pred CCccchHHH
Q psy5988 15 LFAGMNAAV 23 (68)
Q Consensus 15 dapGmNaaI 23 (68)
-.||||++-
T Consensus 9 ~~~gmn~a~ 17 (50)
T TIGR02864 9 RINGMNAAK 17 (50)
T ss_pred ccccchHHH
Confidence 368999863
No 52
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=31.47 E-value=59 Score=23.31 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=22.8
Q ss_pred CCCccchHHHHHHHHHHHHcCCEEEEEeccccccccC
Q psy5988 14 LLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDG 50 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~ 50 (68)
|..||......+..+. .+.+..+.|.++||..-.+.
T Consensus 115 Ggkp~V~~~a~~~l~~-~~p~l~ivg~h~GYf~~~e~ 150 (253)
T COG1922 115 GGKPGVAEQAAAKLRA-KYPGLKIVGSHDGYFDPEEE 150 (253)
T ss_pred cCCHHHHHHHHHHHHH-HCCCceEEEecCCCCChhhH
Confidence 4556655444333332 14568999999999876654
No 53
>KOG0700|consensus
Probab=31.42 E-value=30 Score=26.39 Aligned_cols=16 Identities=25% Similarity=0.106 Sum_probs=14.2
Q ss_pred HcCCEEEEEecccccc
Q psy5988 32 YLGCKVFFIKEGYQGM 47 (68)
Q Consensus 32 ~~G~eV~Gi~~Gy~GL 47 (68)
+.||..+||+||+-|=
T Consensus 96 ~~~~~fvGIyDGhgGp 111 (390)
T KOG0700|consen 96 ENGWLFVGIYDGHGGP 111 (390)
T ss_pred cCCeEEEEEecCCCCc
Confidence 6789999999999984
No 54
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=29.44 E-value=55 Score=24.65 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=24.2
Q ss_pred hcCCCCCCCccchHHHHHHHHHHHHcCCEEEEEe
Q psy5988 8 LLPINLLLFAGMNAAVRACVRMGIYLGCKVFFIK 41 (68)
Q Consensus 8 ~~~~~~~dapGmNaaIRavvr~a~~~G~eV~Gi~ 41 (68)
.+++-++.+.|.-+.+.|..-. +.|++|.|++
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk--~QGyeViGl~ 34 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLK--EQGYEVIGLF 34 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHH--HcCCeEEEEE
Confidence 3567788889988877665533 6899999986
No 55
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=29.22 E-value=91 Score=18.44 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCEEEEEec-ccc
Q psy5988 21 AAVRACVRMGIYLGCKVFFIKE-GYQ 45 (68)
Q Consensus 21 aaIRavvr~a~~~G~eV~Gi~~-Gy~ 45 (68)
++|.-.++.....|++|.-+++ ||.
T Consensus 34 taVwK~Iq~Lr~~G~~I~s~~~kGY~ 59 (79)
T COG1654 34 TAVWKHIQQLREEGVDIESVRGKGYL 59 (79)
T ss_pred HHHHHHHHHHHHhCCceEecCCCcee
Confidence 4666666776789999999998 875
No 56
>PRK00654 glgA glycogen synthase; Provisional
Probab=28.56 E-value=96 Score=22.91 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=29.4
Q ss_pred CccchHHHHHHHHHHHHcCCEEEEEeccccccc
Q psy5988 16 FAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMV 48 (68)
Q Consensus 16 apGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi 48 (68)
..|+..+++++.+.....|++|.-|--.|..+.
T Consensus 16 ~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~ 48 (466)
T PRK00654 16 TGGLGDVVGALPKALAALGHDVRVLLPGYPAIR 48 (466)
T ss_pred cCcHHHHHHHHHHHHHHCCCcEEEEecCCcchh
Confidence 569999999999999899999999988887764
No 57
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=28.19 E-value=1.2e+02 Score=19.67 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=23.6
Q ss_pred CCCccchHHHHHHHHHHHHcCCEEEEEeccccccc
Q psy5988 14 LLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMV 48 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi 48 (68)
-|+-|+|.-+|.+++..-..|+.|+. -|=|.|--
T Consensus 21 ~d~~G~~~~~~~~ad~lA~~Gy~v~~-pD~f~~~~ 54 (218)
T PF01738_consen 21 HDIFGLNPNIRDLADRLAEEGYVVLA-PDLFGGRG 54 (218)
T ss_dssp -BTTBS-HHHHHHHHHHHHTT-EEEE-E-CCCCTS
T ss_pred cCCCCCchHHHHHHHHHHhcCCCEEe-cccccCCC
Confidence 37889999999999988889998874 44454433
No 58
>PF09337 zf-H2C2: His(2)-Cys(2) zinc finger; InterPro: IPR015416 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents an H2C2-type zinc finger that binds to histone upstream activating sequence (UAS) elements found in histone gene promoters []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=27.75 E-value=37 Score=17.48 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=11.1
Q ss_pred ccchHHHHHHHHHH
Q psy5988 17 AGMNAAVRACVRMG 30 (68)
Q Consensus 17 pGmNaaIRavvr~a 30 (68)
|||...|+.+++.+
T Consensus 22 ~gm~~~V~~~ir~C 35 (39)
T PF09337_consen 22 PGMKKDVRRVIRSC 35 (39)
T ss_pred cCHHHHHHHHHhcC
Confidence 78888888888765
No 59
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=27.18 E-value=1e+02 Score=20.21 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHcCCEEEEEeccccccc
Q psy5988 20 NAAVRACVRMGIYLGCKVFFIKEGYQGMV 48 (68)
Q Consensus 20 NaaIRavvr~a~~~G~eV~Gi~~Gy~GLi 48 (68)
|-|+.+-++.|...|++|+-+.|+-...-
T Consensus 149 ~~CV~~T~~~a~~~g~~v~v~~Da~~~~~ 177 (196)
T cd01011 149 DYCVKATALDALKAGFEVRVLEDACRAVD 177 (196)
T ss_pred cHHHHHHHHHHHHCCCEEEEeccccCCCC
Confidence 57899999999999999999998866653
No 60
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=26.10 E-value=1e+02 Score=16.48 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCEEEEEec
Q psy5988 23 VRACVRMGIYLGCKVFFIKE 42 (68)
Q Consensus 23 IRavvr~a~~~G~eV~Gi~~ 42 (68)
++..++.|...|.+.++|-|
T Consensus 17 ~~~~~~~a~~~g~~~v~iTD 36 (67)
T smart00481 17 PEELVKRAKELGLKAIAITD 36 (67)
T ss_pred HHHHHHHHHHcCCCEEEEee
Confidence 66788888899999998865
No 61
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=25.89 E-value=1.6e+02 Score=20.22 Aligned_cols=40 Identities=25% Similarity=0.337 Sum_probs=32.1
Q ss_pred hhhhhhhcCCCCCCCccchH--HHHHHHHHHHHcCCEEEEEe
Q psy5988 2 ILKVLNLLPINLLLFAGMNA--AVRACVRMGIYLGCKVFFIK 41 (68)
Q Consensus 2 ~~~~~~~~~~~~~dapGmNa--aIRavvr~a~~~G~eV~Gi~ 41 (68)
+.+++++|.|-+..+||.=| +|-++++.+...|.+++-+-
T Consensus 90 ~~~~l~~~gi~~i~~~~~EADD~ia~la~~~~~~g~~~~I~S 131 (240)
T cd00008 90 IKELLEALGIPVLEIEGYEADDVIGTLAKKAEAEGYKVVIVS 131 (240)
T ss_pred HHHHHHHCCCCEEecCCcCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34678889999999999887 99999988877787776443
No 62
>PLN02621 nicotinamidase
Probab=25.84 E-value=1e+02 Score=20.23 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHcCCEEEEEecccccc
Q psy5988 20 NAAVRACVRMGIYLGCKVFFIKEGYQGM 47 (68)
Q Consensus 20 NaaIRavvr~a~~~G~eV~Gi~~Gy~GL 47 (68)
|-||.+-++.|...|++|+-+.|+=...
T Consensus 138 ~~CV~~Ta~~a~~~gy~v~v~~Da~as~ 165 (197)
T PLN02621 138 NLCCETTAREAFVRGFRVFFSTDATATA 165 (197)
T ss_pred chhHHHHHHHHHHCCCEEEEeccccCCC
Confidence 5688899999999999999999887665
No 63
>PF08175 SspO: Small acid-soluble spore protein O family; InterPro: IPR012613 This family consists of the small acid-soluble spore proteins (SASP) O type (sspO). SspO (originally cotK) are unique to the spores of Bacillus subtilis and are expressed only in the forespore compartment of sporulating cells of this organism. The sspO is the first gene in a likely operon with sspP and transcription of this gene is primarily by RNA polymerase with the forespore-specific sigma factor, sigma-G. Mutation deleting sspO causes the loss of the SspO from the forespore but had no discernible effect on sporulation, spore properties or spore germination [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=25.47 E-value=21 Score=19.90 Aligned_cols=8 Identities=50% Similarity=0.671 Sum_probs=5.9
Q ss_pred CccchHHH
Q psy5988 16 FAGMNAAV 23 (68)
Q Consensus 16 apGmNaaI 23 (68)
-||||++-
T Consensus 9 ~pGmn~ak 16 (51)
T PF08175_consen 9 IPGMNRAK 16 (51)
T ss_pred CcCccccc
Confidence 48999763
No 64
>COG0048 RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
Probab=25.41 E-value=17 Score=23.82 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHHHcCCEEEEEeccccccccC
Q psy5988 19 MNAAVRACVRMGIYLGCKVFFIKEGYQGMVDG 50 (68)
Q Consensus 19 mNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~ 50 (68)
=|+|+|-++|.-+..|.+|.++--|=-..++.
T Consensus 51 PNSAlRK~~RVrL~NG~~VtAyiPg~Gh~lqE 82 (129)
T COG0048 51 PNSALRKVARVRLINGKEVTAYIPGEGHNLQE 82 (129)
T ss_pred CChhhheeEEEEeeCCcEEEEEcCCCCccccc
Confidence 39999999988877899998887664444443
No 65
>PF09039 HTH_Tnp_Mu_2: Mu DNA binding, I gamma subdomain; InterPro: IPR015126 This domain is responsible for binding the DNA attachment sites at each end of the Mu genome. They adopt a secondary structure comprising a four helix bundle tightly packed around a hydrophobic core consisting of aliphatic and aromatic amino acid residues. Helices 1 and 2 are oriented antiparallel to each other. Helix 3 crosses helices 1 and 2 at angles of 60 and 120 degrees, respectively. Excluding the C-terminal helix 4, the fold of the I-gamma subdomain is remarkably similar to that of the homeodomain family of helix-turn-helix DNA-binding proteins, although their amino acid sequences are completely unrelated []. ; PDB: 2EZL_A 2EZH_A 2EZI_A 2EZK_A.
Probab=25.37 E-value=65 Score=20.01 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=15.1
Q ss_pred CccchHHHHHHHHHHHHcCCEE
Q psy5988 16 FAGMNAAVRACVRMGIYLGCKV 37 (68)
Q Consensus 16 apGmNaaIRavvr~a~~~G~eV 37 (68)
-|-+++|-+-+.+.|..+||.|
T Consensus 48 ~Ps~~~cyrr~~~~a~~~Gw~i 69 (108)
T PF09039_consen 48 KPSFSACYRRLKRAAKENGWPI 69 (108)
T ss_dssp ---HHHHHHHHHHHHHHHT---
T ss_pred CCCHHHHHHHHHHHHHHcCCCC
Confidence 4789999999999999889854
No 66
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=25.33 E-value=97 Score=22.11 Aligned_cols=27 Identities=30% Similarity=0.170 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCEEEEEecccccccc
Q psy5988 23 VRACVRMGIYLGCKVFFIKEGYQGMVD 49 (68)
Q Consensus 23 IRavvr~a~~~G~eV~Gi~~Gy~GLi~ 49 (68)
++.-++...+.|.-|+||.+||+=|.+
T Consensus 70 v~~~v~~~a~~g~~vLGICNGfQiL~e 96 (231)
T COG0047 70 VMDEVREFAEKGKPVLGICNGFQILSE 96 (231)
T ss_pred HHHHHHHHHHCCCeEEEEcchhHHHHH
Confidence 444444445689999999999985543
No 67
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.13 E-value=1.2e+02 Score=19.67 Aligned_cols=45 Identities=24% Similarity=0.393 Sum_probs=36.0
Q ss_pred hhhhhcCCCCCCCccch--HHHHHHHHHHHHcCCEEEEEeccccccc
Q psy5988 4 KVLNLLPINLLLFAGMN--AAVRACVRMGIYLGCKVFFIKEGYQGMV 48 (68)
Q Consensus 4 ~~~~~~~~~~~dapGmN--aaIRavvr~a~~~G~eV~Gi~~Gy~GLi 48 (68)
..|+...|.-..+-|.- -|+.+-++.|...|++|+-+.+.-.+.-
T Consensus 126 ~~Lr~~~i~~l~v~G~~td~CV~~T~~~A~~~gy~v~v~~da~~~~~ 172 (205)
T COG1335 126 DILRNLGIDTVVVCGIATDICVLATARDAFDLGYQVTLVEDATAGSS 172 (205)
T ss_pred HHHHHCCCCEEEEeeeehhHHHHHHHHHHHHCCCeEEEehhhcccCC
Confidence 35666667766777764 5999999999999999999998887766
No 68
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=24.39 E-value=69 Score=22.97 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHcCCEEEEEecccccc
Q psy5988 20 NAAVRACVRMGIYLGCKVFFIKEGYQGM 47 (68)
Q Consensus 20 NaaIRavvr~a~~~G~eV~Gi~~Gy~GL 47 (68)
.+.=-++.|.|+++|.-++||..|.+=|
T Consensus 93 D~~E~aLi~~ALe~~iPILgICRG~Qll 120 (243)
T COG2071 93 DAFELALIRAALERGIPILGICRGLQLL 120 (243)
T ss_pred cHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 4445678899999999999999998744
No 69
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.17 E-value=92 Score=21.93 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=15.7
Q ss_pred CCccchHHHHHHHHHHHHc
Q psy5988 15 LFAGMNAAVRACVRMGIYL 33 (68)
Q Consensus 15 dapGmNaaIRavvr~a~~~ 33 (68)
||||+|+=+-+-+-+++..
T Consensus 113 DcP~lt~elLa~a~taL~~ 131 (211)
T COG3222 113 DCPGLTAELLADAFTALLQ 131 (211)
T ss_pred CCCccCHHHHHHHHHHHhc
Confidence 9999999888887777643
No 70
>KOG1780|consensus
Probab=24.07 E-value=40 Score=20.22 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=16.1
Q ss_pred HcCCEEEEEeccccccccC
Q psy5988 32 YLGCKVFFIKEGYQGMVDG 50 (68)
Q Consensus 32 ~~G~eV~Gi~~Gy~GLi~~ 50 (68)
+.|..|.|+..||.-+.+-
T Consensus 22 nG~r~v~GiLrGyD~FmNi 40 (77)
T KOG1780|consen 22 NGGRKVTGILRGYDPFMNI 40 (77)
T ss_pred CCCcEEEEEEeccchHHhh
Confidence 4678999999999998763
No 71
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=23.00 E-value=1.6e+02 Score=18.40 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHHHHcCCEEEEEecccccc
Q psy5988 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGM 47 (68)
Q Consensus 18 GmNaaIRavvr~a~~~G~eV~Gi~~Gy~GL 47 (68)
|....-+.+++...+.|++++|+.|-...+
T Consensus 6 Gag~~g~~~~~~l~~~g~~vvgfid~~~~~ 35 (201)
T TIGR03570 6 GAGGHGRVVADIAEDSGWEIVGFLDDNPAL 35 (201)
T ss_pred cCCHHHHHHHHHHHhCCCEEEEEEcCCccc
Confidence 444555667777667899999999887544
No 72
>PF04170 NlpE: NlpE N-terminal domain; InterPro: IPR007298 This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway []. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. NlpE from Escherichia coli and Salmonella typhi is also known to confer copper tolerance in copper-sensitive strains of E. coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes [].; PDB: 3LHN_A 2Z4I_B 2Z4H_A.
Probab=22.94 E-value=33 Score=20.14 Aligned_cols=8 Identities=13% Similarity=0.202 Sum_probs=6.0
Q ss_pred CCCccchH
Q psy5988 14 LLFAGMNA 21 (68)
Q Consensus 14 ~dapGmNa 21 (68)
+||||++.
T Consensus 8 ADC~GI~t 15 (87)
T PF04170_consen 8 ADCPGIKT 15 (87)
T ss_dssp TTSSEEEE
T ss_pred CCCCCeEE
Confidence 68888873
No 73
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=22.93 E-value=1.2e+02 Score=19.08 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHcCCEEEEEecccccccc
Q psy5988 20 NAAVRACVRMGIYLGCKVFFIKEGYQGMVD 49 (68)
Q Consensus 20 NaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~ 49 (68)
+-|+.+-++.|.+.|++|+-+.|+=.+.-.
T Consensus 110 d~CV~~Ta~~a~~~g~~v~vi~Da~~s~~~ 139 (155)
T cd01014 110 EMCVDTTVRSAFDLGYDVTVVADACATFDL 139 (155)
T ss_pred chhHHHHHHHHHHCCCcEEEecccccCCCc
Confidence 358888899999999999999988777644
No 74
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=22.67 E-value=65 Score=21.62 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=17.2
Q ss_pred CCCCccchHHHHHHHHHHHHcCCEE
Q psy5988 13 LLLFAGMNAAVRACVRMGIYLGCKV 37 (68)
Q Consensus 13 ~~dapGmNaaIRavvr~a~~~G~eV 37 (68)
+=.=..+|-+++|+.+.| ||.|
T Consensus 41 Lp~~aD~NeVLkALc~eA---Gw~V 62 (150)
T PF05687_consen 41 LPKHADNNEVLKALCREA---GWTV 62 (150)
T ss_pred CCCcCCHHHHHHHHHHhC---CEEE
Confidence 334567999999999866 8877
No 75
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=22.56 E-value=1.5e+02 Score=19.93 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHcCCEEEEEecccccccc
Q psy5988 20 NAAVRACVRMGIYLGCKVFFIKEGYQGMVD 49 (68)
Q Consensus 20 NaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~ 49 (68)
|-|+.+-++.|...|++|+-+.|+-.+.-+
T Consensus 157 ~~CV~~Ta~~a~~~g~~v~vv~Da~~~~~~ 186 (212)
T PTZ00331 157 DFCVLFTALDAVKLGFKVVVLEDATRAVDP 186 (212)
T ss_pred CHHHHHHHHHHHHCCCEEEEeCcCccCCCH
Confidence 578999999999999999999998777643
No 76
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=22.54 E-value=30 Score=24.55 Aligned_cols=27 Identities=26% Similarity=0.187 Sum_probs=19.5
Q ss_pred HHHHHHHHHc-CCEEEEEeccccccccC
Q psy5988 24 RACVRMGIYL-GCKVFFIKEGYQGMVDG 50 (68)
Q Consensus 24 Ravvr~a~~~-G~eV~Gi~~Gy~GLi~~ 50 (68)
+..++...++ |-=++||-+||+-|++-
T Consensus 79 ~~~i~~f~~~~g~~vLGIcNGfQiL~~~ 106 (259)
T PF13507_consen 79 MDAIREFLERPGGFVLGICNGFQILVEL 106 (259)
T ss_dssp HHHHHHHHHCTT-EEEEECHHHHHHCCC
T ss_pred HHHHHHHHhcCCCeEEEEchHhHHHHHh
Confidence 4444444555 99999999999988775
No 77
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=22.44 E-value=1.2e+02 Score=19.69 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=21.7
Q ss_pred CCccchHHHHHHHHHHHHcCCEEEEEeccccccccC
Q psy5988 15 LFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDG 50 (68)
Q Consensus 15 dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~ 50 (68)
..|+-.+....-.+. .+.|.++.|.++||.+..+.
T Consensus 54 ~~~~~~~~~~~~l~~-~yp~l~i~g~~~g~~~~~~~ 88 (171)
T cd06533 54 AKPEVLEKAAERLRA-RYPGLKIVGYHHGYFGPEEE 88 (171)
T ss_pred CCHHHHHHHHHHHHH-HCCCcEEEEecCCCCChhhH
Confidence 444444333333332 26789999999999986553
No 78
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p). This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.
Probab=22.40 E-value=1.5e+02 Score=19.86 Aligned_cols=38 Identities=13% Similarity=0.009 Sum_probs=31.3
Q ss_pred CCCCccchHHHHHHHHHHHHcCCEEEEEeccccccccC
Q psy5988 13 LLLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDG 50 (68)
Q Consensus 13 ~~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GLi~~ 50 (68)
...+|=+.-+...+-+.|...|.+++|++..-.-+-+.
T Consensus 48 ~~l~P~~Eval~~ve~~~~~~gl~IvG~Yhsh~~~~d~ 85 (182)
T cd08060 48 LALAPMLEVALALVDAYCKSSGLVIVGYYQANERLDDS 85 (182)
T ss_pred cccCHHHHHHHHHHHHHHHHCCCEEEEEEecCCcccCC
Confidence 45677778889999999999999999999887766543
No 79
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=21.23 E-value=1.1e+02 Score=20.76 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCEEEEEeccccc
Q psy5988 24 RACVRMGIYLGCKVFFIKEGYQG 46 (68)
Q Consensus 24 Ravvr~a~~~G~eV~Gi~~Gy~G 46 (68)
|.+...|...|..++.+.+||-.
T Consensus 14 ~~~~~~a~~~~i~~~~~E~G~lR 36 (269)
T PF05159_consen 14 RAAIEVAKELGIPVIFFEDGFLR 36 (269)
T ss_pred HHHHHHHHHhCCCEEEEecCccc
Confidence 34445566789999999999874
No 80
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=21.17 E-value=57 Score=23.77 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=20.0
Q ss_pred ccchHHHHHHHHHHHHcCCEEEEEe
Q psy5988 17 AGMNAAVRACVRMGIYLGCKVFFIK 41 (68)
Q Consensus 17 pGmNaaIRavvr~a~~~G~eV~Gi~ 41 (68)
.-|+.|+.+ +|.|..+-|.+|||.
T Consensus 234 ~h~d~Avks-aRaaRkkki~c~gI~ 257 (280)
T COG5074 234 GHTDKAVKS-ARAARKKKIRCYGIC 257 (280)
T ss_pred hhHHHHHHH-HHHHHhcceehhhhH
Confidence 348899999 888888889999874
No 81
>PF11813 DUF3334: Protein of unknown function (DUF3334); InterPro: IPR024513 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family are typically between 227 to 238 amino acids in length.
Probab=21.14 E-value=69 Score=22.82 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCEEEE-Eecccccccc
Q psy5988 21 AAVRACVRMGIYLGCKVFF-IKEGYQGMVD 49 (68)
Q Consensus 21 aaIRavvr~a~~~G~eV~G-i~~Gy~GLi~ 49 (68)
+-+..+.|+++.-..-+|. +-+||.||+-
T Consensus 36 ~mVQkItkT~LkPDiGCFvlFDGGFsGLVv 65 (229)
T PF11813_consen 36 AMVQKITKTCLKPDIGCFVLFDGGFSGLVV 65 (229)
T ss_pred HHHHhhhhcccCCCcceEEEecCCcceEEE
Confidence 4567788899854444433 5678999974
No 82
>PHA02944 hypothetical protein; Provisional
Probab=20.92 E-value=85 Score=21.56 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=17.1
Q ss_pred HcCC--EEEEEeccccccccCCCc
Q psy5988 32 YLGC--KVFFIKEGYQGMVDGGDN 53 (68)
Q Consensus 32 ~~G~--eV~Gi~~Gy~GLi~~~~~ 53 (68)
+.|| |+-..+.||.||...+++
T Consensus 120 ~~gW~~eIka~f~gYdGl~~~sKh 143 (180)
T PHA02944 120 ERGWAGEIKAMFIGYDGLFADSKH 143 (180)
T ss_pred CCcceEEEEEEEecccccccccce
Confidence 3566 888899999999877543
No 83
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=20.84 E-value=57 Score=20.86 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=26.2
Q ss_pred hcCCCCCCCccchHHHHHHHHHHHHcCCEEEEEecccccc
Q psy5988 8 LLPINLLLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGM 47 (68)
Q Consensus 8 ~~~~~~~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~GL 47 (68)
...+++.||||-...++.+.+..... .-++-+-+.-+|+
T Consensus 69 ~~~i~~iDtPG~~~f~~~~~~~~~~~-D~ailvVda~~g~ 107 (188)
T PF00009_consen 69 NRKITLIDTPGHEDFIKEMIRGLRQA-DIAILVVDANDGI 107 (188)
T ss_dssp SEEEEEEEESSSHHHHHHHHHHHTTS-SEEEEEEETTTBS
T ss_pred ccceeecccccccceeecccceeccc-ccceeeeeccccc
Confidence 34678899999998888777665333 3455566655554
No 84
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=20.64 E-value=1.4e+02 Score=20.83 Aligned_cols=31 Identities=16% Similarity=0.045 Sum_probs=19.7
Q ss_pred CCCccchHHHHHHHHHHHHcCCEEEEEeccccc
Q psy5988 14 LLFAGMNAAVRACVRMGIYLGCKVFFIKEGYQG 46 (68)
Q Consensus 14 ~dapGmNaaIRavvr~a~~~G~eV~Gi~~Gy~G 46 (68)
|..|+-......-.+. .+|.++.|.++||..
T Consensus 112 G~~~~v~~~a~~~l~~--~y~l~i~g~~~Gyf~ 142 (243)
T PRK03692 112 GGKPEVLAQTEAKLRT--QWNVNIVGSQDGYFT 142 (243)
T ss_pred CCCHHHHHHHHHHHHH--HhCCEEEEEeCCCCC
Confidence 4556644444333333 349999999999975
No 85
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=20.59 E-value=1.3e+02 Score=17.97 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=16.4
Q ss_pred HHHHHHcCC-EEEEEecccccccc
Q psy5988 27 VRMGIYLGC-KVFFIKEGYQGMVD 49 (68)
Q Consensus 27 vr~a~~~G~-eV~Gi~~Gy~GLi~ 49 (68)
++.+...|+ +++.+.+||++=-+
T Consensus 81 a~~L~~~G~~~v~~l~gG~~~~~~ 104 (117)
T cd01522 81 AEAAAQAGFTNVYNVLEGFEGDLD 104 (117)
T ss_pred HHHHHHCCCCeEEECcCceecCCC
Confidence 334446786 69999999988643
No 86
>PRK05844 pyruvate flavodoxin oxidoreductase subunit gamma; Validated
Probab=20.15 E-value=1.8e+02 Score=19.06 Aligned_cols=27 Identities=11% Similarity=-0.070 Sum_probs=22.7
Q ss_pred CccchHHHHHHHHHHHHcCCEEEEEec
Q psy5988 16 FAGMNAAVRACVRMGIYLGCKVFFIKE 42 (68)
Q Consensus 16 apGmNaaIRavvr~a~~~G~eV~Gi~~ 42 (68)
=+|...+-+-+++++...|+.|++..+
T Consensus 11 GQGi~ta~~ila~a~~~~G~~v~~~~~ 37 (186)
T PRK05844 11 GQGAVTGAKGLADVIAKTGKEVQAFAF 37 (186)
T ss_pred CCcHHHHHHHHHHHHHhCCceEEEeec
Confidence 378999999999998889999987653
Done!