RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5988
(68 letters)
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a
human skin commensal).
Length = 746
Score = 103 bits (258), Expect = 9e-28
Identities = 34/50 (68%), Positives = 40/50 (80%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67
GMNAAVRA VRM IY+GC+V+ I+EGYQG+VDGGDNI EA W V I+
Sbjct: 14 GMNAAVRAVVRMAIYVGCRVYAIREGYQGLVDGGDNIEEAQWEDVRGILS 63
Score = 49.6 bits (119), Expect = 7e-09
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVS 63
GMNAA R+ VR + G V I G+ G+ + E WS V
Sbjct: 402 GGMNAATRSAVRYALARGHTVIAIHNGFSGLARHD--VRELTWSDVE 446
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include eukaryotic ATP-dependent
phosphofructokinases. These have evolved from the
bacterial PFKs by gene duplication and fusion events
and exhibit complex allosteric behavior.
Length = 762
Score = 93.3 bits (232), Expect = 3e-24
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSII 66
GMNAAVRA VRMGIY+G KVFF+ EGY+G+V GGD I +A W SVS+ +
Sbjct: 17 GMNAAVRAVVRMGIYVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWL 65
Score = 47.1 bits (112), Expect = 4e-08
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSV 62
AGMNAAVR+ VR G+ G + + I +G++G+ G IVE W V
Sbjct: 402 AGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAKGQ--IVELGWIDV 445
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase.
Length = 279
Score = 78.1 bits (193), Expect = 2e-19
Identities = 27/50 (54%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67
GMNAA+RA VR I G +V+ I EGY G+V G NI + +W SVS II
Sbjct: 14 GMNAAIRAVVRSAIAEGLEVYGIYEGYAGLVAG--NIKQLDWESVSDIIQ 61
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have
a large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 75.0 bits (185), Expect = 5e-18
Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67
GMNAA+R VR I G +V+ I EGY G+V+G +I E +W SVS II+
Sbjct: 14 GMNAAIRGVVRSAIAEGLEVYGIYEGYAGLVEG--DIKELDWESVSDIIN 61
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 62.0 bits (152), Expect = 2e-13
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
GMNAA+RA VR I G +V+ I +GY G+++G +IV+ + SVS II++
Sbjct: 15 GMNAAIRAVVRTAISEGLEVYGIYDGYAGLLEG--DIVKLDLKSVSDIINR 63
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
metabolism].
Length = 347
Score = 57.6 bits (140), Expect = 9e-12
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
GMNA +RA VR I G +VF I GY G+++G +I V +I++
Sbjct: 15 PGMNAVIRAVVRTAIKEGLEVFGIYNGYLGLLEG--DIKPLTREDVDDLINR 64
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase.
6-phosphofructokinase (EC 2.7.1.11) catalyzes the
addition of phosphate from ATP to fructose 6-phosphate
to give fructose 1,6-bisphosphate. This represents a
key control step in glycolysis. This model hits
bacterial ATP-dependent 6-phosphofructokinases which
lack a beta-hairpin loop present in TIGR02483 family
members. TIGR02483 contains members that are
ATP-dependent as well as members that are
pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 54.7 bits (132), Expect = 8e-11
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
GMNAA+RA VR IY G +V+ I+ GY+G+++G I +VS IIH+
Sbjct: 13 GMNAAIRAVVRTAIYHGFEVYGIRRGYKGLING--KIEPLESKNVSGIIHR 61
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 53.6 bits (129), Expect = 2e-10
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
GMNAA+R VR I G +V+ I++GY G++ G +IV + SVS II++
Sbjct: 14 GMNAAIRGVVRSAIAEGLEVYGIRDGYAGLIAG--DIVPLDRYSVSDIINR 62
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase. Members of this
family that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 324
Score = 32.7 bits (75), Expect = 0.006
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 17 AGMNAAVRACVRMGIY-LGCKVFFIKEGYQGMVDGG 51
G+NA +R VR I G +V I++G++G+++G
Sbjct: 12 PGLNAVIRGVVRRAIAEYGWEVIGIRDGWRGLLEGD 47
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 31.2 bits (71), Expect = 0.017
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 17 AGMNAAVRACVR--MGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSII 66
AG+NA +RA V G Y G +V I++ QG++ +E + V ++
Sbjct: 17 AGLNAVIRAVVHRARGTY-GWEVIGIRDATQGLMARPPQYIELDLDQVDDLL 67
>gnl|CDD|223376 COG0299, PurN, Folate-dependent phosphoribosylglycinamide
formyltransferase PurN [Nucleotide transport and
metabolism].
Length = 200
Score = 28.3 bits (64), Expect = 0.23
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 4 KVLNLLPINLLLFAGMNA---AVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEA 57
++LN+ P L F G++A A+ A V+ GC V F+ EG VD G I +A
Sbjct: 103 RILNIHPSLLPAFPGLHAHEQALEAGVK---VSGCTVHFVTEG----VDTGPIIAQA 152
>gnl|CDD|223815 COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding
protein) [Cell envelope biogenesis, outer membrane].
Length = 661
Score = 25.4 bits (56), Expect = 2.7
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 6 LNLLPINLLLFAGMNAAVRACVRMGI 31
LN+ + LL G++ V ++GI
Sbjct: 422 LNIPAVRLLQKVGLDKVVDTAKKLGI 447
>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism
associated alcohol dehydrogenase. This clade of
zinc-binding alcohol dehydrogenases (members of
pfam00107) are repeatedly associated with genes proposed
to be involved with the catabolism of phosphonate
compounds.
Length = 280
Score = 25.2 bits (55), Expect = 3.2
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 5 VLNLLPINLLL-FAGMNAAVRAC---VRMGIYLGCKVF 38
+ N +++ L F+G AAVRAC + +G G V
Sbjct: 182 LQNGRGVDVALEFSGATAAVRACLESLDVG---GTAVL 216
>gnl|CDD|236587 PRK09606, PRK09606, DNA-directed RNA polymerase subunit B'';
Validated.
Length = 494
Score = 24.9 bits (55), Expect = 3.5
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 36 KVFFIKEGYQGMVD---GGDNIVEANWSSVSSII 66
KVF + GY+ +V D ++E ++ SV I
Sbjct: 184 KVFSQRRGYRALVTVERNRDGLLEVSFPSVPGSI 217
>gnl|CDD|215960 pfam00509, Hemagglutinin, Haemagglutinin. Hemagglutinin from
influenza virus causes membrane fusion of the viral
membrane with the host membrane. Fusion occurs after the
host cell internalises the virus by endocytosis. The
drop of pH causes release of a hydrophobic fusion
peptide and a large conformational change leading to
membrane fusion.
Length = 550
Score = 25.0 bits (55), Expect = 3.6
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 39 FIKEGYQGMVDG 50
FI+ G++GM+DG
Sbjct: 337 FIEGGWEGMIDG 348
>gnl|CDD|216160 pfam00864, P2X_receptor, ATP P2X receptor.
Length = 374
Score = 23.8 bits (52), Expect = 9.2
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 24 RACVRMGI-YLGCKVFFIKEGYQ 45
R + + Y+ VF ++GYQ
Sbjct: 21 RLIQLVILSYVIGWVFIYEKGYQ 43
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.143 0.436
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,392,092
Number of extensions: 250753
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 22
Length of query: 68
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 29
Effective length of database: 9,207,796
Effective search space: 267026084
Effective search space used: 267026084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)