RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5988
(68 letters)
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 97.2 bits (242), Expect = 7e-26
Identities = 26/52 (50%), Positives = 32/52 (61%)
Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
GMNAAVRA R GI+ GCKV+ EGY G+V GGD + E W V ++
Sbjct: 223 PGMNAAVRAVTRAGIFYGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSI 274
Score = 71.4 bits (175), Expect = 9e-17
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
+ +N A R + G +VF I+ G+ G++ G + E NW V +
Sbjct: 611 SALNPATRVATLNSLAKGHRVFAIRNGFAGLIRHGA-VRELNWIDVEDWHNT 661
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 96.3 bits (240), Expect = 1e-25
Identities = 33/52 (63%), Positives = 41/52 (78%)
Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
GMNAAVRA VR+GI+ G +VFF+ EGYQG+VDGGD+I EA W SVS ++
Sbjct: 28 QGMNAAVRAVVRVGIFTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQL 79
Score = 70.5 bits (173), Expect = 2e-16
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
AGMNAAVR+ VR+G+ G +V + +G++G G I EA WS V +
Sbjct: 413 AGMNAAVRSTVRIGLIQGNRVLVVHDGFEGPAKG--QIEEAGWSYVGGWTGQ 462
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 95.9 bits (239), Expect = 2e-25
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
GMNAAVRA VR GI+ GC VF + EGY+G++ GG + + W V + +
Sbjct: 18 PGMNAAVRAVVRTGIHFGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSE 69
Score = 71.6 bits (176), Expect = 7e-17
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
A +NAA RA + G K + I G+ G++ G+ + E +W V + +
Sbjct: 406 AALNAATRAATLYCLSHGHKPYAIMNGFSGLIQTGE-VKELSWIDVENWHNL 456
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 94.4 bits (235), Expect = 7e-25
Identities = 28/52 (53%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDN-IVEANWSSVSSIIHK 68
GMN VRA VR GIY GCKVF I EGY+G+V GG+ I E W V + +
Sbjct: 195 GMNPFVRAVVRAGIYKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVE 246
Score = 73.6 bits (181), Expect = 1e-17
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
GMN+AV + + G + I G+ G+ +++ NW +
Sbjct: 584 GGMNSAVYSMATYCMSRGHVPYAIHNGFSGLAR-HESVRSINWLDIEGWGSL 634
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 93.1 bits (232), Expect = 2e-24
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGG-DNIVEANWSSVSSIIHK 68
GMN+ VRA VR I+ GC+ F + EGY+G+V GG + I E +W V +
Sbjct: 17 GMNSNVRAIVRSAIFKGCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAE 68
Score = 73.1 bits (180), Expect = 2e-17
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
G+N+AV + + G + + I G+ G+ +++ NW + +
Sbjct: 406 GGINSAVYSMATYCMSQGHRPYAIYNGWSGLAR-HESVRSLNWKDMLGWQSR 456
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 78.2 bits (194), Expect = 2e-19
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
GMNAAVRA R+ I G +VF I+ G+ G+V G +I V+ +I+
Sbjct: 15 GMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAG--DIFPLESEDVAHLINV 63
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome;
2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A
4pfk_A* 1mto_A*
Length = 319
Score = 77.9 bits (193), Expect = 2e-19
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
GMNAAVRA VR IY +V+ I GY G++ G I + SV IIH+
Sbjct: 15 GMNAAVRAVVRKAIYHDVEVYGIYNGYAGLISG--KIEKLELGSVGDIIHR 63
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP
ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB:
2pfk_A
Length = 320
Score = 74.4 bits (184), Expect = 4e-18
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 18 GMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
GMNAA+R VR + G +V I +GY G+ + +V+ + SVS +I++
Sbjct: 16 GMNAAIRGVVRSALTEGLEVMGIYDGYLGLYED--RMVQLDRYSVSDMINR 64
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 51.4 bits (123), Expect = 1e-09
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 18 GMNAAVRACVR--MGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
G + + K+F K G G+++ + +E S ++S +
Sbjct: 86 GGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLEN--DKIELTESLINSYRNT 136
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 50.1 bits (120), Expect = 3e-09
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 18 GMNAAVRACVRMGI--YLGCKVFFIKEGYQGMVDG-GDNIVEANWSSVSSIIHK 68
G+N +R+ GI Y +V + GY G+ +E + V++I H
Sbjct: 111 GLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHY 164
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A
{Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 39.3 bits (92), Expect = 2e-05
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDG-GDNIVEANWSSVSSI 65
A +NA+ + K+ I G G++ +++++ S ++I
Sbjct: 16 AVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAI 65
>3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis,
antibiotics design, transferase, hydrolase; HET: M0E;
2.16A {Escherichia coli} PDB: 3fwl_A* 3vma_A*
Length = 751
Score = 26.5 bits (59), Expect = 0.60
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 6 LNLLPINLLLFAGMNAAVRACVRMGI 31
+N+ +NL + G+ A +++G+
Sbjct: 520 MNVPTVNLGMALGLPAVTETWIKLGV 545
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid
biosynthesis, transferase; 1.70A {Escherichia coli}
PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A*
2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Length = 253
Score = 23.2 bits (51), Expect = 7.9
Identities = 7/21 (33%), Positives = 8/21 (38%), Gaps = 4/21 (19%)
Query: 17 AGMNA---AVRACVRMGI-YL 33
AG + AV GI L
Sbjct: 45 AGAKSVRRAVSFAANNGIEAL 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.143 0.436
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,026,790
Number of extensions: 48071
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 19
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.6 bits)