RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5988
         (68 letters)



>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 319

 Score = 55.1 bits (132), Expect = 2e-11
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
           GMNAA+R+ VR  IY G +V+ +  GY G++ G  NI +     V  IIH+
Sbjct: 14 PGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAG--NIKKLEVGDVGDIIHR 63


>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
          {Escherichia coli [TaxId: 562]}
          Length = 320

 Score = 54.3 bits (130), Expect = 3e-11
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 17 AGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIH 67
           GMNAA+R  VR  +  G +V  I +GY G+ +  D +V+ +  SVS +I+
Sbjct: 15 PGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYE--DRMVQLDRYSVSDMIN 63


>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
           phosphofructokinase {Lyme disease spirochete (Borrelia
           burgdorferi) [TaxId: 139]}
          Length = 550

 Score = 53.9 bits (129), Expect = 5e-11
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 17  AGMNAAVRACVR--MGIYLGCKVFFIKEGYQGMVDGGDNIVEANWSSVSSIIHK 68
            G +  +              K+F  K G  G+++   + +E   S ++S  + 
Sbjct: 82  PGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLEN--DKIELTESLINSYRNT 133


>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme)
          {Thermotoga maritima [TaxId: 2336]}
          Length = 222

 Score = 24.3 bits (52), Expect = 1.4
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 15 LFAGMNAAVRACVRMGIYLGCKVFFIKEGYQGMVDGGDNIVEANW 59
          +  G+ AA    V+  + LG K        +G+++  D     N 
Sbjct: 30 VVNGIGAAGYNIVKFLLDLGVKNVVAV-DRKGILNENDPETCLNE 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.143    0.436 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 247,434
Number of extensions: 8792
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 4
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)