Query psy5989
Match_columns 220
No_of_seqs 237 out of 730
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 23:43:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 5.4E-36 1.2E-40 257.3 8.1 124 35-179 107-234 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 1.4E-34 3E-39 255.3 13.3 115 45-180 115-233 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 1.3E-32 2.9E-37 240.8 8.9 146 10-181 83-232 (236)
4 KOG0841|consensus 100.0 1.1E-31 2.4E-36 235.0 11.1 125 29-178 103-231 (247)
5 COG5040 BMH1 14-3-3 family pro 99.9 9.6E-24 2.1E-28 181.8 5.1 71 5-75 137-207 (268)
6 smart00101 14_3_3 14-3-3 homol 99.9 5.9E-23 1.3E-27 181.5 7.1 75 4-78 134-208 (244)
7 KOG0841|consensus 99.8 1.6E-21 3.6E-26 171.1 7.2 76 5-83 135-210 (247)
8 PF00244 14-3-3: 14-3-3 protei 99.8 9.2E-21 2E-25 166.1 5.9 74 5-78 133-206 (236)
9 KOG1840|consensus 96.2 0.34 7.4E-06 47.6 16.9 180 14-206 257-477 (508)
10 PF13424 TPR_12: Tetratricopep 95.6 0.032 7E-07 39.3 5.1 53 96-150 22-74 (78)
11 KOG1840|consensus 94.6 0.16 3.4E-06 49.9 8.5 134 14-150 341-478 (508)
12 TIGR00990 3a0801s09 mitochondr 94.2 1.5 3.3E-05 42.8 14.2 86 53-150 445-536 (615)
13 PF12862 Apc5: Anaphase-promot 91.5 1 2.3E-05 33.7 7.0 75 70-157 1-76 (94)
14 TIGR00990 3a0801s09 mitochondr 91.2 9.7 0.00021 37.2 15.2 165 15-208 311-496 (615)
15 KOG4626|consensus 88.6 4.6 0.0001 41.4 10.6 122 14-163 336-469 (966)
16 PF13424 TPR_12: Tetratricopep 87.1 0.74 1.6E-05 32.2 3.2 54 14-69 21-74 (78)
17 KOG4626|consensus 86.7 3.1 6.8E-05 42.6 8.2 118 14-159 268-397 (966)
18 PRK14720 transcript cleavage f 82.0 27 0.00058 37.0 12.9 104 95-208 132-252 (906)
19 PRK11189 lipoprotein NlpI; Pro 79.5 45 0.00097 29.7 17.1 159 16-209 82-266 (296)
20 PF13374 TPR_10: Tetratricopep 76.3 2.7 5.9E-05 25.4 2.4 23 96-118 19-41 (42)
21 PF13374 TPR_10: Tetratricopep 73.4 3.6 7.8E-05 24.8 2.4 24 14-37 18-41 (42)
22 KOG4162|consensus 72.7 31 0.00067 35.9 10.0 101 40-149 393-505 (799)
23 KOG0553|consensus 72.5 22 0.00049 33.0 8.3 78 16-119 99-184 (304)
24 TIGR02917 PEP_TPR_lipo putativ 69.9 1.1E+02 0.0024 29.5 14.5 132 52-206 747-898 (899)
25 PRK09782 bacteriophage N4 rece 69.7 54 0.0012 35.0 11.4 44 96-148 626-669 (987)
26 PRK11788 tetratricopeptide rep 68.5 87 0.0019 27.9 15.4 102 96-208 197-311 (389)
27 TIGR02521 type_IV_pilW type IV 67.2 59 0.0013 25.4 15.5 85 49-150 73-163 (234)
28 KOG1155|consensus 67.1 44 0.00095 33.3 9.3 31 178-208 465-495 (559)
29 PRK04841 transcriptional regul 66.0 94 0.002 31.5 11.9 119 16-151 470-602 (903)
30 PRK12370 invasion protein regu 65.4 1E+02 0.0022 30.0 11.7 107 14-150 320-434 (553)
31 PF13414 TPR_11: TPR repeat; P 62.3 21 0.00046 23.9 4.7 47 96-150 20-66 (69)
32 PRK12370 invasion protein regu 62.2 1.1E+02 0.0024 29.8 11.3 105 15-148 355-467 (553)
33 PF13429 TPR_15: Tetratricopep 61.8 16 0.00035 31.6 5.0 140 47-208 15-175 (280)
34 PRK02603 photosystem I assembl 59.2 93 0.002 25.0 11.9 49 48-108 42-101 (172)
35 COG3063 PilF Tfp pilus assembl 58.0 40 0.00086 30.6 6.8 84 38-148 37-129 (250)
36 COG4387 Mu-like prophage prote 56.7 45 0.00097 27.5 6.3 69 143-216 33-111 (139)
37 PF14938 SNAP: Soluble NSF att 51.8 1.7E+02 0.0037 25.8 11.6 117 15-150 52-183 (282)
38 KOG2002|consensus 50.5 51 0.0011 35.3 7.0 98 19-133 250-366 (1018)
39 PF12862 Apc5: Anaphase-promot 50.4 41 0.00088 24.9 4.9 23 14-36 14-36 (94)
40 PF03755 YicC_N: YicC-like fam 49.7 29 0.00064 28.5 4.4 64 96-159 81-148 (159)
41 TIGR02917 PEP_TPR_lipo putativ 48.3 2.6E+02 0.0057 26.9 15.6 29 180-208 636-664 (899)
42 PF04212 MIT: MIT (microtubule 46.6 98 0.0021 21.5 7.2 61 139-205 3-68 (69)
43 PF13414 TPR_11: TPR repeat; P 45.4 45 0.00099 22.2 4.1 48 14-69 19-66 (69)
44 KOG4234|consensus 40.7 1.5E+02 0.0033 26.8 7.6 31 95-129 111-142 (271)
45 PRK14720 transcript cleavage f 40.5 77 0.0017 33.7 6.6 50 14-73 132-181 (906)
46 cd05804 StaR_like StaR_like; a 39.5 2.5E+02 0.0054 24.6 9.0 85 48-149 121-213 (355)
47 TIGR02552 LcrH_SycD type III s 39.4 1.6E+02 0.0035 21.9 7.4 96 32-150 12-113 (135)
48 TIGR02947 SigH_actino RNA poly 39.0 73 0.0016 26.1 5.2 54 49-104 27-80 (193)
49 CHL00033 ycf3 photosystem I as 38.7 2E+02 0.0043 22.9 7.6 50 14-69 51-100 (168)
50 PF13431 TPR_17: Tetratricopep 36.6 25 0.00054 21.5 1.5 33 101-142 1-33 (34)
51 PRK11189 lipoprotein NlpI; Pro 36.1 3.1E+02 0.0067 24.3 9.3 80 50-150 73-160 (296)
52 PRK12544 RNA polymerase sigma 35.5 72 0.0016 27.0 4.7 54 48-103 33-86 (206)
53 PRK15359 type III secretion sy 35.2 2.1E+02 0.0045 22.6 7.1 101 19-150 14-120 (144)
54 PRK12530 RNA polymerase sigma 34.0 73 0.0016 26.2 4.4 53 49-103 23-75 (189)
55 PLN03088 SGT1, suppressor of 33.7 1.9E+02 0.0042 26.6 7.5 80 14-119 18-105 (356)
56 KOG4162|consensus 32.6 1E+02 0.0022 32.4 5.8 56 5-69 451-506 (799)
57 PF04698 Rab_eff_C: Rab effect 32.5 58 0.0013 33.7 4.1 30 128-157 25-59 (714)
58 TIGR02521 type_IV_pilW type IV 32.4 2.4E+02 0.0052 21.9 14.6 136 50-208 40-198 (234)
59 PRK12522 RNA polymerase sigma 31.9 1.3E+02 0.0029 24.0 5.6 53 50-104 20-72 (173)
60 PRK11788 tetratricopeptide rep 31.5 3.7E+02 0.008 23.8 14.5 26 183-208 253-278 (389)
61 KOG2002|consensus 30.7 6.7E+02 0.015 27.3 11.4 115 16-155 182-303 (1018)
62 PRK12545 RNA polymerase sigma 30.5 83 0.0018 26.2 4.2 54 49-104 24-77 (201)
63 PRK12520 RNA polymerase sigma 30.4 93 0.002 25.4 4.5 52 50-103 19-70 (191)
64 TIGR02943 Sig70_famx1 RNA poly 30.2 85 0.0018 25.9 4.2 53 49-103 18-70 (188)
65 CHL00033 ycf3 photosystem I as 29.2 2.9E+02 0.0063 21.9 10.6 90 41-148 35-139 (168)
66 PF08717 nsp8: nsp8 replicase; 29.0 1.7E+02 0.0037 25.7 5.9 50 94-163 14-74 (199)
67 PF13371 TPR_9: Tetratricopept 28.9 1.8E+02 0.0039 19.4 6.2 45 96-149 12-56 (73)
68 KOG1155|consensus 27.5 4E+02 0.0087 26.8 8.7 109 14-150 380-494 (559)
69 PLN03088 SGT1, suppressor of 27.5 4.3E+02 0.0094 24.3 8.8 45 96-149 53-97 (356)
70 PF10516 SHNi-TPR: SHNi-TPR; 27.4 1.3E+02 0.0028 19.3 3.8 21 96-116 18-38 (38)
71 TIGR02983 SigE-fam_strep RNA p 27.3 1.5E+02 0.0031 23.3 4.9 51 51-103 24-74 (162)
72 PRK12516 RNA polymerase sigma 27.2 1.2E+02 0.0027 25.0 4.7 41 48-88 25-65 (187)
73 PRK09642 RNA polymerase sigma 26.5 1.1E+02 0.0023 24.1 4.0 51 50-103 12-62 (160)
74 KOG1679|consensus 26.4 45 0.00097 30.3 1.9 67 65-154 181-250 (291)
75 PRK12511 RNA polymerase sigma 26.3 1.6E+02 0.0034 24.3 5.2 54 48-103 19-72 (182)
76 PF04781 DUF627: Protein of un 25.0 2.5E+02 0.0054 22.4 5.8 41 69-120 40-80 (111)
77 PF14887 HMG_box_5: HMG (high 24.1 73 0.0016 24.3 2.4 38 167-204 35-72 (85)
78 KOG0301|consensus 24.0 1.5E+02 0.0033 30.8 5.3 74 122-200 653-730 (745)
79 KOG1107|consensus 23.7 2.8E+02 0.0061 28.9 7.1 43 14-56 656-699 (760)
80 KOG0985|consensus 23.4 6.8E+02 0.015 28.0 10.0 126 70-216 1038-1170(1666)
81 TIGR02795 tol_pal_ybgF tol-pal 23.1 2.8E+02 0.0061 19.6 8.9 50 96-151 56-105 (119)
82 TIGR02948 SigW_bacill RNA poly 22.4 2.1E+02 0.0045 22.9 5.1 51 51-103 36-86 (187)
83 TIGR02950 SigM_subfam RNA poly 22.2 2.9E+02 0.0063 21.2 5.7 39 49-88 11-49 (154)
84 cd05500 Bromo_BDF1_2_I Bromodo 21.8 1.4E+02 0.0031 22.5 3.8 72 112-190 25-96 (103)
85 PRK12539 RNA polymerase sigma 21.8 2E+02 0.0043 23.3 4.9 51 52-104 44-94 (184)
86 TIGR02959 SigZ RNA polymerase 21.5 2E+02 0.0042 23.2 4.8 53 49-103 11-63 (170)
87 COG2956 Predicted N-acetylgluc 21.4 5.3E+02 0.011 24.9 8.0 49 100-149 228-276 (389)
88 PRK04841 transcriptional regul 21.3 8.6E+02 0.019 24.6 11.9 55 14-69 547-601 (903)
89 PRK12547 RNA polymerase sigma 21.3 1.9E+02 0.004 23.0 4.5 53 49-103 22-74 (164)
90 PRK14574 hmsH outer membrane p 21.1 6.8E+02 0.015 26.3 9.6 17 53-69 80-96 (822)
91 KOG0550|consensus 20.5 3.8E+02 0.0082 26.6 7.0 72 31-109 197-279 (486)
92 PRK10370 formate-dependent nit 20.2 5.2E+02 0.011 21.6 8.0 22 186-207 151-172 (198)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-36 Score=257.25 Aligned_cols=124 Identities=36% Similarity=0.589 Sum_probs=115.3
Q ss_pred CCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCC
Q psy5989 35 THPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQ 114 (220)
Q Consensus 35 t~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~ 114 (220)
+|.|.-.-...+-||||.+.+| +|||++++-.|+. ++++.+.++++|+.|-++|..+||
T Consensus 107 ~hlipaa~~~EskvFyyKMKGD--------------YyRYlAEf~~G~~-------~~e~a~~slE~YK~AseiA~teLp 165 (268)
T COG5040 107 KHLIPAATTGESKVFYYKMKGD--------------YYRYLAEFSVGEA-------REEAADSSLEAYKAASEIATTELP 165 (268)
T ss_pred HhcccccccccceEEEEeecch--------------HHHHHHHhccchH-------hHHHHHhHHHHHHHHHHHhhccCC
Confidence 4555555666789999999988 9999999999988 999999999999999999999999
Q ss_pred CCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh----hhhhhhhHHHHHhhcccccchh
Q psy5989 115 PTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR----DTKRSVCLLCEIFHTMSSSGEK 179 (220)
Q Consensus 115 pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld----~~~~d~~lilq~L~~~s~~s~r 179 (220)
|||||||||+||||||||||+|+|++||.|||+|||+||.+|| ++|+|+|||||+|||+-.+|.-
T Consensus 166 PT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTS 234 (268)
T COG5040 166 PTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTS 234 (268)
T ss_pred CCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeec
Confidence 9999999999999999999999999999999999999999998 7899999999999998877754
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=1.4e-34 Score=255.27 Aligned_cols=115 Identities=38% Similarity=0.613 Sum_probs=108.4
Q ss_pred chhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhccc
Q psy5989 45 NFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLA 124 (220)
Q Consensus 45 N~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~ 124 (220)
.-.|||+.+.+| +|||++++..+++ |++++++|+++|+.|+++|+++|||||||||||+
T Consensus 115 eskVFy~KmKGD--------------YyRYlaE~~~~~e-------~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLa 173 (244)
T smart00101 115 ESKVFYLKMKGD--------------YHRYLAEFKTGAE-------RKEAAENTLVAYKSAQDIALAELPPTHPIRLGLA 173 (244)
T ss_pred HHHHHHHHHHHH--------------HHHHHHHHcCcHH-------HHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHH
Confidence 457999998877 9999999999988 8999999999999999999999999999999999
Q ss_pred chhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh----hhhhhhhHHHHHhhcccccchhH
Q psy5989 125 LNFSVFYYEIINSPARACHLAKQVKYSCIGASR----DTKRSVCLLCEIFHTMSSSGEKE 180 (220)
Q Consensus 125 LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld----~~~~d~~lilq~L~~~s~~s~r~ 180 (220)
||||||||||+++|++||.+|++|||+||+++| ++|+|+++|||+|||+..+|.-+
T Consensus 174 LN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~ 233 (244)
T smart00101 174 LNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSD 233 (244)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999998 78999999999999988777653
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=99.97 E-value=1.3e-32 Score=240.77 Aligned_cols=146 Identities=30% Similarity=0.532 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Q psy5989 10 EGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFP 89 (220)
Q Consensus 10 r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~ 89 (220)
|+++.+.-..-.++.+++-...|.|... ..---|||+.+.+| ++||++++..+++
T Consensus 83 k~kie~EL~~~C~eii~lId~~Lip~~~-----~~eskvfy~KmkgD--------------yyRYlaE~~~~~~------ 137 (236)
T PF00244_consen 83 KKKIEDELIDICNEIIRLIDKSLIPSAT-----SPESKVFYYKMKGD--------------YYRYLAEFDSGDE------ 137 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHS------SHHHHHHHHHHHHH--------------HHHHHHHCTTHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-----chhHHHHHHHHhcc--------------ccccccccccchh------
Confidence 4445555555566666666665555532 33367899988876 9999999998877
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh----hhhhhhhH
Q psy5989 90 CSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR----DTKRSVCL 165 (220)
Q Consensus 90 ~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld----~~~~d~~l 165 (220)
|++++++|+++|++|+++|+++|||+||+||||+||||||||||++++++||+||++|||+|++++| +.|+|+++
T Consensus 138 -~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ 216 (236)
T PF00244_consen 138 -KKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTL 216 (236)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHH
T ss_pred -hHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999997 77999999
Q ss_pred HHHHhhcccccchhHH
Q psy5989 166 LCEIFHTMSSSGEKEE 181 (220)
Q Consensus 166 ilq~L~~~s~~s~r~~ 181 (220)
|||+|||+..+|..+.
T Consensus 217 ilqlLrdNl~lW~~e~ 232 (236)
T PF00244_consen 217 ILQLLRDNLTLWTSEE 232 (236)
T ss_dssp HHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHhccccc
Confidence 9999999988887664
No 4
>KOG0841|consensus
Probab=99.97 E-value=1.1e-31 Score=234.97 Aligned_cols=125 Identities=38% Similarity=0.618 Sum_probs=111.7
Q ss_pred hhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q psy5989 29 KSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDI 108 (220)
Q Consensus 29 ~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~ei 108 (220)
.+.|.|.-|.+ --..||||...+| ++||++++..+++ |++++++++++|+.|.++
T Consensus 103 d~~Li~sa~~~----~es~vf~~kmKgd--------------y~rylae~~sg~e-------rke~~~~sl~aYk~a~~i 157 (247)
T KOG0841|consen 103 DKHLIPSATLP----GESKVFYLKMKGD--------------YYRYLAEFASGDE-------RKEAADQSLEAYKEASEI 157 (247)
T ss_pred HHHHhhhcccc----cccceeeeeccch--------------hHHHHHHhcchhH-------HHHHHHHHHHHHHHHHHH
Confidence 34555555554 2346999976666 9999999999988 999999999999999999
Q ss_pred HHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh----hhhhhhhHHHHHhhcccccch
Q psy5989 109 AKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR----DTKRSVCLLCEIFHTMSSSGE 178 (220)
Q Consensus 109 A~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld----~~~~d~~lilq~L~~~s~~s~ 178 (220)
++..|+|||||||||+||||||||||+|.|++||.|||+|||+||.++| ++|+|+|+|||+|||+-++|.
T Consensus 158 a~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWt 231 (247)
T KOG0841|consen 158 AKAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWT 231 (247)
T ss_pred HHhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhc
Confidence 9999999999999999999999999999999999999999999999998 889999999999999765543
No 5
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=99.89 E-value=9.6e-24 Score=181.77 Aligned_cols=71 Identities=55% Similarity=0.823 Sum_probs=68.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHH
Q psy5989 5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFY 75 (220)
Q Consensus 5 ~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~ 75 (220)
.+|+.|+++++.++++|+.|.++|..+||||||||||||||||||||||+|+|++||.|||.||++....+
T Consensus 137 ~~G~~~~e~a~~slE~YK~AseiA~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~EL 207 (268)
T COG5040 137 SVGEAREEAADSSLEAYKAASEIATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISEL 207 (268)
T ss_pred ccchHhHHHHHhHHHHHHHHHHHhhccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999998744
No 6
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=99.88 E-value=5.9e-23 Score=181.46 Aligned_cols=75 Identities=48% Similarity=0.731 Sum_probs=70.1
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHh
Q psy5989 4 DGDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFL 78 (220)
Q Consensus 4 ~~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~ 78 (220)
..+|++|++++++|+++|++|.++|..+|||||||||||+||||||||||+++|++||.+|++||++....+-.+
T Consensus 134 ~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l 208 (244)
T smart00101 134 FKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTL 208 (244)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 357889999999999999999999998999999999999999999999999999999999999999998765544
No 7
>KOG0841|consensus
Probab=99.84 E-value=1.6e-21 Score=171.08 Aligned_cols=76 Identities=54% Similarity=0.818 Sum_probs=69.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy5989 5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPE 83 (220)
Q Consensus 5 ~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e 83 (220)
.+|++|++++++++++|+.|.++++.+|+|||||||||+||||||||||+|.|++||.|||+||++... +++.-++
T Consensus 135 ~sg~erke~~~~sl~aYk~a~~ia~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~---eldtl~e 210 (247)
T KOG0841|consen 135 ASGDERKEAADQSLEAYKEASEIAKAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIA---ELDTLSE 210 (247)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH---hhccccH
Confidence 478999999999999999999999999999999999999999999999999999999999999888754 4444433
No 8
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=99.82 E-value=9.2e-21 Score=166.11 Aligned_cols=74 Identities=45% Similarity=0.736 Sum_probs=68.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHh
Q psy5989 5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFL 78 (220)
Q Consensus 5 ~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~ 78 (220)
.+|++|++++++|.++|++|+++|..+||||||+||||+||||||||||++++++||.||++||++....+..+
T Consensus 133 ~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l 206 (236)
T PF00244_consen 133 DSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTL 206 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGS
T ss_pred ccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999855544
No 9
>KOG1840|consensus
Probab=96.22 E-value=0.34 Score=47.62 Aligned_cols=180 Identities=15% Similarity=0.131 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHH--------------HHHHHhc
Q psy5989 14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYF--------------CFYFFLM 79 (220)
Q Consensus 14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~--------------~~~~~~~ 79 (220)
..+|...|++|+.|-...+.++||-.--..-|.+|-||.. ++.++|-...+.|+.=+- ..+.-+.
T Consensus 257 ~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~-GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~ 335 (508)
T KOG1840|consen 257 YDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ-GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAIL 335 (508)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 4578999999999999999999997766667788888753 444444444444433222 2222221
Q ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHh----
Q psy5989 80 NDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGA---- 155 (220)
Q Consensus 80 ~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~e---- 155 (220)
. .+.-.+.+...|+.|+++....+.+.||.-=|..-|+++-|+- ++..++|..+.++|+.-.-.-
T Consensus 336 ~----------~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 336 Q----------SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred H----------HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhcccCc
Confidence 1 1222478899999999999988999999999999999888777 688999999988886555322
Q ss_pred ----------hh-------------hhhhhhhHHHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhH
Q psy5989 156 ----------SR-------------DTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVT 206 (220)
Q Consensus 156 ----------ld-------------~~~~d~~lilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~ 206 (220)
|. .+|.++-=|+ .+.-+...+.=...--++++=++--|||+-++.-.+|.
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 21 2344444555 33334444444566678888888888888888766665
No 10
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.57 E-value=0.032 Score=39.28 Aligned_cols=53 Identities=19% Similarity=0.329 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989 96 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY 150 (220)
Q Consensus 96 e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd 150 (220)
++|...|++|+++ .+.+++.||...-...|.+..++. ++++++|...-++|++
T Consensus 22 ~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 22 DEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Confidence 8899999999999 667899888777777788887777 7999999999888876
No 11
>KOG1840|consensus
Probab=94.64 E-value=0.16 Score=49.92 Aligned_cols=134 Identities=18% Similarity=0.107 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc--c--
Q psy5989 14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLF--P-- 89 (220)
Q Consensus 14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~--~-- 89 (220)
.+.+..-||.|.+|-...+.+.||.-=|.--|.++-|+ .++..++|-++.++|+............+.-.+-|. .
T Consensus 341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~-~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~ 419 (508)
T KOG1840|consen 341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL-KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY 419 (508)
T ss_pred hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH
Confidence 67888999999999998899999999999999988655 678899999999999887755333221110000010 0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989 90 CSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY 150 (220)
Q Consensus 90 ~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd 150 (220)
.+-.-...+.+.|.++..|. +...|.||--++..+|.++- |+-+++.++|+++......
T Consensus 420 ~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 420 EELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHHHHH
Confidence 12222456889999999999 68999999999999999886 5668999999999987653
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=94.17 E-value=1.5 Score=42.83 Aligned_cols=86 Identities=13% Similarity=0.141 Sum_probs=46.8
Q ss_pred hhcChHHHHHHHHHHHH------HHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccch
Q psy5989 53 ILNSPDKACQLAKQVCA------HYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALN 126 (220)
Q Consensus 53 Il~~~~~A~~lAk~A~~------d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN 126 (220)
-+++.++|....+.++. +.+.++..+..+ ..-.+.|...|++|+++... ..+.++..++ .+|
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~----------~g~~~~A~~~~~~Al~l~p~-~~~~~~~~~~-l~~ 512 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD----------QNKFDEAIEKFDTAIELEKE-TKPMYMNVLP-LIN 512 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----------ccCHHHHHHHHHHHHhcCCc-cccccccHHH-HHH
Confidence 35566666666655543 333444444111 11137788888888865431 2223322222 345
Q ss_pred hHHHHHHHhcChHHHHHHHHHHHH
Q psy5989 127 FSVFYYEIINSPARACHLAKQVKY 150 (220)
Q Consensus 127 ~SVF~yEIl~~~~~A~~iAk~Afd 150 (220)
.+..+|+-.++.++|..+.++|+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 555666667888888877776654
No 13
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.53 E-value=1 Score=33.66 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcc-cchhHHHHHHHhcChHHHHHHHHHH
Q psy5989 70 HYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGL-ALNFSVFYYEIINSPARACHLAKQV 148 (220)
Q Consensus 70 d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL-~LN~SVF~yEIl~~~~~A~~iAk~A 148 (220)
++.+|+..+..++. ..|.+...+.++.+.....+.+...+.. .||.+.+++. ++++++|+...++|
T Consensus 1 ~~l~~~~~~~~~dy------------~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 1 HYLRYLNALRSGDY------------SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEA 67 (94)
T ss_pred CHHHHHHHHHcCCH------------HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 46778888888888 7788888888888887777775444444 4778887777 69999998877777
Q ss_pred HHHHHHhhh
Q psy5989 149 KYSCIGASR 157 (220)
Q Consensus 149 fdeAi~eld 157 (220)
++-|-..=|
T Consensus 68 i~~Are~~D 76 (94)
T PF12862_consen 68 IRLARENGD 76 (94)
T ss_pred HHHHHHHCC
Confidence 776655444
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=91.18 E-value=9.7 Score=37.25 Aligned_cols=165 Identities=8% Similarity=0.068 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCCC
Q psy5989 15 DDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFSP 86 (220)
Q Consensus 15 e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~~ 86 (220)
+.|..+|+.|++.. +.+| ....+++.--..|..++++++|....++++. ..+..+..+ ..++.
T Consensus 311 ~~A~~~~~~al~~~-----~~~~-~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~--- 381 (615)
T TIGR00990 311 EEAARAFEKALDLG-----KLGE-KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDP--- 381 (615)
T ss_pred HHHHHHHHHHHhcC-----CCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCH---
Confidence 34555566655432 2334 3334455544455678999999999888874 334444444 22222
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh---------
Q psy5989 87 LFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR--------- 157 (220)
Q Consensus 87 ~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld--------- 157 (220)
+.|...|++|+++ .|.+|- +..+.+..++. +++.++|+...+++++.--....
T Consensus 382 ---------~eA~~~~~~al~~-----~p~~~~---~~~~lg~~~~~-~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 382 ---------DKAEEDFDKALKL-----NSEDPD---IYYHRAQLHFI-KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred ---------HHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 6788888888753 566654 34455555554 78999988877777542111111
Q ss_pred ---hhhhhhh-HHHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhc
Q psy5989 158 ---DTKRSVC-LLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTET 208 (220)
Q Consensus 158 ---~~~~d~~-lilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~ 208 (220)
.-+.++. .+-+.++..- ...+-+.+++.+--+-.+|++-+....+.++.
T Consensus 444 ~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNFP--EAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 1122222 1112222111 22345566777777777888887777776654
No 15
>KOG4626|consensus
Probab=88.58 E-value=4.6 Score=41.44 Aligned_cols=122 Identities=18% Similarity=0.206 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHH------HHHHHHHHHhcCCCCCCCC
Q psy5989 14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVC------AHYFCFYFFLMNDPEFSPL 87 (220)
Q Consensus 14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~------~d~~~~~~~~~~~~e~~~~ 87 (220)
+..+.++|++|+. |.|+||--+ -|..+-|-| ++..+.|..+=++|| +..+..++-+-++.
T Consensus 336 V~ea~~cYnkaL~-----l~p~hadam---~NLgni~~E-~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq----- 401 (966)
T KOG4626|consen 336 VTEAVDCYNKALR-----LCPNHADAM---NNLGNIYRE-QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ----- 401 (966)
T ss_pred hHHHHHHHHHHHH-----hCCccHHHH---HHHHHHHHH-hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc-----
Confidence 5567777777764 667777543 345555555 455778887776664 45566666663331
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHH------HHHHHHHHhhhhhhh
Q psy5989 88 FPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK------QVKYSCIGASRDTKR 161 (220)
Q Consensus 88 ~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk------~AfdeAi~eld~~~~ 161 (220)
...++|..+|++|+.| .|+ --.-.-|..+=|.| +++...|++.-. .+|-+|.++|-+.||
T Consensus 402 -----gnl~~Ai~~YkealrI-----~P~---fAda~~NmGnt~ke-~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 402 -----GNLDDAIMCYKEALRI-----KPT---FADALSNMGNTYKE-MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred -----ccHHHHHHHHHHHHhc-----Cch---HHHHHHhcchHHHH-hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 1247899999999864 344 33344567777777 588888877654 458899999988888
Q ss_pred hh
Q psy5989 162 SV 163 (220)
Q Consensus 162 d~ 163 (220)
|+
T Consensus 468 Ds 469 (966)
T KOG4626|consen 468 DS 469 (966)
T ss_pred cc
Confidence 85
No 16
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=87.15 E-value=0.74 Score=32.20 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH
Q psy5989 14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA 69 (220)
Q Consensus 14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~ 69 (220)
-++|+..|++|+++ .+.+++.||.-.-...|.+.. |.-++++++|...-++|+.
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~-~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGEC-YYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHh
Confidence 56899999999999 667888887654444555544 4566778888888777764
No 17
>KOG4626|consensus
Probab=86.74 E-value=3.1 Score=42.62 Aligned_cols=118 Identities=20% Similarity=0.295 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHH------HHHHHHHHHhcCCCCCCCC
Q psy5989 14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVC------AHYFCFYFFLMNDPEFSPL 87 (220)
Q Consensus 14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~------~d~~~~~~~~~~~~e~~~~ 87 (220)
-++|..+|+.|. .++|.|-+--| |..+-||| .++.+-|+..=++|+ -|.++.+++-.++
T Consensus 268 ~d~Avs~Y~rAl-----~lrpn~A~a~g---Nla~iYye-qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd------ 332 (966)
T KOG4626|consen 268 FDRAVSCYLRAL-----NLRPNHAVAHG---NLACIYYE-QGLLDLAIDTYKRALELQPNFPDAYNNLANALKD------ 332 (966)
T ss_pred chHHHHHHHHHH-----hcCCcchhhcc---ceEEEEec-cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh------
Confidence 457888898886 37888877655 56666776 366677777766664 4778877777443
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHH------HHHHHHhhhhh
Q psy5989 88 FPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV------KYSCIGASRDT 159 (220)
Q Consensus 88 ~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~A------fdeAi~eld~~ 159 (220)
+--+..+.++|++|+. |.|+||--+ -|..+-|-| .+..+.|..+=+.| |..|.++|-..
T Consensus 333 ----~G~V~ea~~cYnkaL~-----l~p~hadam---~NLgni~~E-~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i 397 (966)
T KOG4626|consen 333 ----KGSVTEAVDCYNKALR-----LCPNHADAM---NNLGNIYRE-QGKIEEATRLYLKALEVFPEFAAAHNNLASI 397 (966)
T ss_pred ----ccchHHHHHHHHHHHH-----hCCccHHHH---HHHHHHHHH-hccchHHHHHHHHHHhhChhhhhhhhhHHHH
Confidence 1235789999999985 679998654 466777777 46777777777776 34455555433
No 18
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=82.05 E-value=27 Score=37.03 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh-------------hhhh
Q psy5989 95 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR-------------DTKR 161 (220)
Q Consensus 95 ~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld-------------~~~~ 161 (220)
.++|..+|+++++ +.|.||. +||+=-|+|... +.++|..++++|+.--|..=. .-..
T Consensus 132 ~~ka~~~yer~L~-----~D~~n~~----aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~ 201 (906)
T PRK14720 132 NKKLKGVWERLVK-----ADRDNPE----IVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSD 201 (906)
T ss_pred hHHHHHHHHHHHh-----cCcccHH----HHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcc
Confidence 3678889998885 4588886 556555666656 999999999999877664421 1234
Q ss_pred hhhHHHHHhhcccccchhHHHHHHHHH----HHHHhhHHHHHHHHHHhHhc
Q psy5989 162 SVCLLCEIFHTMSSSGEKEELVQRAKL----AEQAERYDDMAAAMKAVTET 208 (220)
Q Consensus 162 d~~lilq~L~~~s~~s~r~~~~~~akl----~eq~ery~~m~~~~~~~~~~ 208 (220)
|....+++++...+.......|.+..- -...|.||+-....|.+++.
T Consensus 202 d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 202 DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 455777777776644445555544433 23478888888888888763
No 19
>PRK11189 lipoprotein NlpI; Provisional
Probab=79.51 E-value=45 Score=29.68 Aligned_cols=159 Identities=18% Similarity=0.131 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCCCC
Q psy5989 16 DSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFSPL 87 (220)
Q Consensus 16 ~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~~~ 87 (220)
.|...|++|++ +.|.+|. ++|.--..|..+++.++|...-++|+. ..+..+..+ ..+..
T Consensus 82 ~A~~~~~~Al~-----l~P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~---- 148 (296)
T PRK11189 82 LARNDFSQALA-----LRPDMAD----AYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRY---- 148 (296)
T ss_pred HHHHHHHHHHH-----cCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----
Confidence 45566666654 4566653 444444567788899999887777754 222222222 22222
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh--hhh-----
Q psy5989 88 FPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR--DTK----- 160 (220)
Q Consensus 88 ~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld--~~~----- 160 (220)
+.|.+.|+.++. +.|.+|.|. + -.+..+..+++++|+...+++. ...+ .+.
T Consensus 149 --------~eA~~~~~~al~-----~~P~~~~~~-~----~~~l~~~~~~~~~A~~~l~~~~----~~~~~~~~~~~~~~ 206 (296)
T PRK11189 149 --------ELAQDDLLAFYQ-----DDPNDPYRA-L----WLYLAESKLDPKQAKENLKQRY----EKLDKEQWGWNIVE 206 (296)
T ss_pred --------HHHHHHHHHHHH-----hCCCCHHHH-H----HHHHHHccCCHHHHHHHHHHHH----hhCCccccHHHHHH
Confidence 667777777764 568888542 1 1233455667777776664433 2221 100
Q ss_pred ------hhhhHHHHHh---hcccccchh--HHHHHHHHHHHHHhhHHHHHHHHHHhHhcC
Q psy5989 161 ------RSVCLLCEIF---HTMSSSGEK--EELVQRAKLAEQAERYDDMAAAMKAVTETG 209 (220)
Q Consensus 161 ------~d~~lilq~L---~~~s~~s~r--~~~~~~akl~eq~ery~~m~~~~~~~~~~~ 209 (220)
.....+-+.+ .....+..+ +-..+++++.++..+|++=+.+-++++..+
T Consensus 207 ~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 207 FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 0001111111 111111111 457889999999999999999999988765
No 20
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.35 E-value=2.7 Score=25.35 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCc
Q psy5989 96 EDSQKAYQEAFDIAKSKMQPTHP 118 (220)
Q Consensus 96 e~a~~aYq~A~eiA~~~L~pt~P 118 (220)
+.|...|++++++.++-+.|.||
T Consensus 19 ~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 19 EEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHH---------
T ss_pred chhhHHHHHHHHHHHHHhccccc
Confidence 78889999999998888899888
No 21
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.40 E-value=3.6 Score=24.81 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCc
Q psy5989 14 VDDSQKAYQQAFEISKSKMQPTHP 37 (220)
Q Consensus 14 ~e~a~~aYq~A~eiA~~~L~pt~P 37 (220)
.+.|...+++++++.+.-++|.||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 568899999999999988899998
No 22
>KOG4162|consensus
Probab=72.71 E-value=31 Score=35.90 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=68.2
Q ss_pred cccccchhHHHHHhhcChHHHHHHHHHHHHHHHH----------HHHHhcCCCCC--CCCccccHHHHHHHHHHHHHHHH
Q psy5989 40 LGLALNFSVFYYEILNSPDKACQLAKQVCAHYFC----------FYFFLMNDPEF--SPLFPCSLAVVEDSQKAYQEAFD 107 (220)
Q Consensus 40 LGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~----------~~~~~~~~~e~--~~~~~~k~~~~e~a~~aYq~A~e 107 (220)
....|--|--|+|=++..+++..-|.+|++++-- +..-+..++.+ ++..-+|..--.++.++|++|.+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 3344445677889999999999999999996521 11122222111 12333578888899999999974
Q ss_pred HHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHH
Q psy5989 108 IAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVK 149 (220)
Q Consensus 108 iA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Af 149 (220)
+.|+||. ...+.|++| -+.++.+.|.+.++.+.
T Consensus 473 -----~d~~dp~---~if~lalq~-A~~R~l~sAl~~~~eaL 505 (799)
T KOG4162|consen 473 -----FDPTDPL---VIFYLALQY-AEQRQLTSALDYAREAL 505 (799)
T ss_pred -----cCCCCch---HHHHHHHHH-HHHHhHHHHHHHHHHHH
Confidence 6799992 334445554 45688888888888873
No 23
>KOG0553|consensus
Probab=72.53 E-value=22 Score=33.03 Aligned_cols=78 Identities=21% Similarity=0.334 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH---HHHHHHHHh-----cCCCCCCCC
Q psy5989 16 DSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA---HYFCFYFFL-----MNDPEFSPL 87 (220)
Q Consensus 16 ~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~---d~~~~~~~~-----~~~~e~~~~ 87 (220)
.|.+.|.+|+ +|-|++||..--- -.+ |--++..+.|+.=+++|+. ++.+=+-.+ ..+..
T Consensus 99 eAv~kY~~AI-----~l~P~nAVyycNR--AAA--y~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~---- 165 (304)
T KOG0553|consen 99 EAVDKYTEAI-----ELDPTNAVYYCNR--AAA--YSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY---- 165 (304)
T ss_pred HHHHHHHHHH-----hcCCCcchHHHHH--HHH--HHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH----
Confidence 4455555554 4899999832100 001 2246666666666666553 344433333 22222
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q psy5989 88 FPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPI 119 (220)
Q Consensus 88 ~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~Pi 119 (220)
+.|.++|++|++ |-|.|++
T Consensus 166 --------~~A~~aykKaLe-----ldP~Ne~ 184 (304)
T KOG0553|consen 166 --------EEAIEAYKKALE-----LDPDNES 184 (304)
T ss_pred --------HHHHHHHHhhhc-----cCCCcHH
Confidence 667777888874 6777773
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=69.86 E-value=1.1e+02 Score=29.53 Aligned_cols=132 Identities=11% Similarity=0.054 Sum_probs=64.8
Q ss_pred HhhcChHHHHHHHHHHHHH------HHHHHHHh--cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcc
Q psy5989 52 EILNSPDKACQLAKQVCAH------YFCFYFFL--MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGL 123 (220)
Q Consensus 52 EIl~~~~~A~~lAk~A~~d------~~~~~~~~--~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL 123 (220)
.-.++.++|....++++.. .+..+..+ ..++. ++|...|+++++. .|.+|.-+
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~------------~~A~~~~~~~~~~-----~p~~~~~~-- 807 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY------------DKAIKHYRTVVKK-----APDNAVVL-- 807 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH------------HHHHHHHHHHHHh-----CCCCHHHH--
Confidence 3467777777766665542 22333333 12222 5677778877653 35555432
Q ss_pred cchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh------------hhhhhhhHHHHHhhcccccchhHHHHHHHHHHHH
Q psy5989 124 ALNFSVFYYEIINSPARACHLAKQVKYSCIGASR------------DTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQ 191 (220)
Q Consensus 124 ~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld------------~~~~d~~lilq~L~~~s~~s~r~~~~~~akl~eq 191 (220)
.|.+..+.. .++ .+|+.+.++++...-..-+ .-++++..+++....... .+-+-...++.+-..
T Consensus 808 -~~l~~~~~~-~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 808 -NNLAWLYLE-LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLA 883 (899)
T ss_pred -HHHHHHHHh-cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHH
Confidence 334444444 455 6688888877653211100 112333222222222111 133344445555556
Q ss_pred HhhHHHHHHHHHHhH
Q psy5989 192 AERYDDMAAAMKAVT 206 (220)
Q Consensus 192 ~ery~~m~~~~~~~~ 206 (220)
..++++-.+..++++
T Consensus 884 ~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 884 TGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHh
Confidence 666666666666554
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=69.67 E-value=54 Score=34.98 Aligned_cols=44 Identities=7% Similarity=0.229 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHH
Q psy5989 96 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 148 (220)
Q Consensus 96 e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~A 148 (220)
+.|..+|++|+. +.|.|| ....|++.++.+ .++.++|+.+.++|
T Consensus 626 deA~~~l~~AL~-----l~Pd~~---~a~~nLG~aL~~-~G~~eeAi~~l~~A 669 (987)
T PRK09782 626 PAAVSDLRAALE-----LEPNNS---NYQAALGYALWD-SGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHHH-----hCCCCH---HHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 455555555553 345555 344555555555 35566665554444
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=68.55 E-value=87 Score=27.89 Aligned_cols=102 Identities=11% Similarity=0.018 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHH-------hhh------hhhhh
Q psy5989 96 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIG-------ASR------DTKRS 162 (220)
Q Consensus 96 e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~-------eld------~~~~d 162 (220)
+.|...|++++++ .|.++ ...++.+..+.. .+++++|+.+.+++....-. .+- .-+++
T Consensus 197 ~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 197 DAARALLKKALAA-----DPQCV---RASILLGDLALA-QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHHHHHHHHHhH-----CcCCH---HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 5677777777653 23332 122333444333 78889998888877643111 110 11222
Q ss_pred hhHHHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhc
Q psy5989 163 VCLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTET 208 (220)
Q Consensus 163 ~~lilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~ 208 (220)
+.-.++...... -+-...+.++.+..+..+|++-....+++++.
T Consensus 268 A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 268 GLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 222222222211 11233466777777778888877777766554
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=67.16 E-value=59 Score=25.43 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=46.1
Q ss_pred HHHHhhcChHHHHHHHHHHHHH------HHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhc
Q psy5989 49 FYYEILNSPDKACQLAKQVCAH------YFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLG 122 (220)
Q Consensus 49 F~yEIl~~~~~A~~lAk~A~~d------~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLG 122 (220)
..|...++.++|....++++.. .+..+..+.. ...-.+.|.+.|++++.. +.+|....
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~----------~~g~~~~A~~~~~~~~~~------~~~~~~~~ 136 (234)
T TIGR02521 73 LYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC----------QQGKYEQAMQQFEQAIED------PLYPQPAR 136 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH----------HcccHHHHHHHHHHHHhc------cccccchH
Confidence 4455678889988888877642 1111222100 111136677777777642 22333333
Q ss_pred ccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989 123 LALNFSVFYYEIINSPARACHLAKQVKY 150 (220)
Q Consensus 123 L~LN~SVF~yEIl~~~~~A~~iAk~Afd 150 (220)
+..|.+..++. .++.++|.....+++.
T Consensus 137 ~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 137 SLENAGLCALK-AGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 34444444444 6888887777766654
No 28
>KOG1155|consensus
Probab=67.07 E-value=44 Score=33.31 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhHhc
Q psy5989 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTET 208 (220)
Q Consensus 178 ~r~~~~~~akl~eq~ery~~m~~~~~~~~~~ 208 (220)
+..-+|++|||=|+-+++++-+.++++-++.
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5578999999999999999999999987764
No 29
>PRK04841 transcriptional regulator MalT; Provisional
Probab=65.99 E-value=94 Score=31.48 Aligned_cols=119 Identities=10% Similarity=-0.042 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHH------------HHHHh--cCC
Q psy5989 16 DSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFC------------FYFFL--MND 81 (220)
Q Consensus 16 ~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~------------~~~~~--~~~ 81 (220)
.+...++.|.+. ++..++...+.+++.-...+-..++.+.|.....++....-. .+..+ ..|
T Consensus 470 ~A~~~~~~al~~----~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 470 EAERLAELALAE----LPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred HHHHHHHHHHhc----CCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 344444544432 344455556667776666677899999999888887643211 11222 222
Q ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHH
Q psy5989 82 PEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYS 151 (220)
Q Consensus 82 ~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afde 151 (220)
+ .+.|...+++|++++...-.+.+|....+..+.+.-+++- ++.+.|.....++.+-
T Consensus 546 ~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 546 F------------LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW-ARLDEAEQCARKGLEV 602 (903)
T ss_pred C------------HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhHHh
Confidence 2 2778888899999887643444454433334445566664 8999988887776553
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=65.39 E-value=1e+02 Score=30.01 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCC
Q psy5989 14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFS 85 (220)
Q Consensus 14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~ 85 (220)
.+.|..++++|++ +.|.+|--+. +.+ +.+...++.++|....++|+. ..+.++..+ ..|..
T Consensus 320 ~~~A~~~~~~Al~-----ldP~~~~a~~---~lg-~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~-- 388 (553)
T PRK12370 320 MIKAKEHAIKATE-----LDHNNPQALG---LLG-LINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQL-- 388 (553)
T ss_pred HHHHHHHHHHHHh-----cCCCCHHHHH---HHH-HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH--
Confidence 4566666666654 5677664321 112 234457888888888887763 234444444 22322
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989 86 PLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY 150 (220)
Q Consensus 86 ~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd 150 (220)
+.|...|++|++ +.|.+|-.. .+....+|. .++.++|+..++++..
T Consensus 389 ----------~eAi~~~~~Al~-----l~P~~~~~~---~~~~~~~~~-~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 389 ----------EEALQTINECLK-----LDPTRAAAG---ITKLWITYY-HTGIDDAIRLGDELRS 434 (553)
T ss_pred ----------HHHHHHHHHHHh-----cCCCChhhH---HHHHHHHHh-ccCHHHHHHHHHHHHH
Confidence 667788887764 456665321 111111233 5777888877766643
No 31
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=62.28 E-value=21 Score=23.92 Aligned_cols=47 Identities=13% Similarity=0.223 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989 96 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY 150 (220)
Q Consensus 96 e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd 150 (220)
+.|...|++|+++ .|.||. +..|.++-++..-+++++|+...++|+.
T Consensus 20 ~~A~~~~~~ai~~-----~p~~~~---~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 20 EEAIEYFEKAIEL-----DPNNAE---AYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHH-----STTHHH---HHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-----CCCCHH---HHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 7899999999875 355544 7778887777743278898888887764
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=62.20 E-value=1.1e+02 Score=29.79 Aligned_cols=105 Identities=13% Similarity=0.041 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------HHHHHH--HhcCCCCCCC
Q psy5989 15 DDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------YFCFYF--FLMNDPEFSP 86 (220)
Q Consensus 15 e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------~~~~~~--~~~~~~e~~~ 86 (220)
+.|..+|++|++ +.|.+|--+ .+. -..+-..+++++|....++|+.. ...+.. -+..+..
T Consensus 355 ~~A~~~~~~Al~-----l~P~~~~a~---~~l-g~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~--- 422 (553)
T PRK12370 355 IVGSLLFKQANL-----LSPISADIK---YYY-GWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGI--- 422 (553)
T ss_pred HHHHHHHHHHHH-----hCCCCHHHH---HHH-HHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH---
Confidence 456667777664 567776522 222 33455679999999988887541 111111 1111211
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHH
Q psy5989 87 LFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 148 (220)
Q Consensus 87 ~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~A 148 (220)
+.|...|++++. ..+|.+|..+ .|.+..+. -.++.++|....++.
T Consensus 423 ---------eeA~~~~~~~l~----~~~p~~~~~~---~~la~~l~-~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 423 ---------DDAIRLGDELRS----QHLQDNPILL---SMQVMFLS-LKGKHELARKLTKEI 467 (553)
T ss_pred ---------HHHHHHHHHHHH----hccccCHHHH---HHHHHHHH-hCCCHHHHHHHHHHh
Confidence 555666666543 2367777632 33344433 379999998887664
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=61.79 E-value=16 Score=31.63 Aligned_cols=140 Identities=18% Similarity=0.156 Sum_probs=29.0
Q ss_pred hHHHHHhhcChHHHHHHHHHHHHH--------HHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q psy5989 47 SVFYYEILNSPDKACQLAKQVCAH--------YFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHP 118 (220)
Q Consensus 47 SVF~yEIl~~~~~A~~lAk~A~~d--------~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~P 118 (220)
+.-+| ..+++++|+.+-+++..+ +.+.++.+... .+-.+.|..+|++.+.+... .|...
T Consensus 15 A~~~~-~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~----------~~~~~~A~~ay~~l~~~~~~--~~~~~ 81 (280)
T PF13429_consen 15 ARLLY-QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS----------LGDYDEAIEAYEKLLASDKA--NPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc-ccccccccccccccccccccccccccccccccccccc----------cccccccccccccccccccc--ccccc
Confidence 44444 457888888877554333 23333333111 11236788888887754221 23333
Q ss_pred chhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh------------hhhhhhhHHHHHhhccccc-chhHHHHHH
Q psy5989 119 IRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR------------DTKRSVCLLCEIFHTMSSS-GEKEELVQR 185 (220)
Q Consensus 119 irLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld------------~~~~d~~lilq~L~~~s~~-s~r~~~~~~ 185 (220)
.||+ .+ -..+++++|..++..+|...- .-+ .-++...-++..+...... .+-.-++.+
T Consensus 82 ~~l~------~l--~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 152 (280)
T PF13429_consen 82 ERLI------QL--LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLAL 152 (280)
T ss_dssp ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHH
T ss_pred cccc------cc--ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 3332 22 135899999999998876442 211 1122233333333221111 223345678
Q ss_pred HHHHHHHhhHHHHHHHHHHhHhc
Q psy5989 186 AKLAEQAERYDDMAAAMKAVTET 208 (220)
Q Consensus 186 akl~eq~ery~~m~~~~~~~~~~ 208 (220)
|.+..+..++++-...++++++.
T Consensus 153 a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 153 AEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 88889999999999999998875
No 34
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=59.18 E-value=93 Score=25.02 Aligned_cols=49 Identities=8% Similarity=0.047 Sum_probs=32.1
Q ss_pred HHHHHhhcChHHHHHHHHHHHH---------HHHHHHHHh--cCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q psy5989 48 VFYYEILNSPDKACQLAKQVCA---------HYFCFYFFL--MNDPEFSPLFPCSLAVVEDSQKAYQEAFDI 108 (220)
Q Consensus 48 VF~yEIl~~~~~A~~lAk~A~~---------d~~~~~~~~--~~~~e~~~~~~~k~~~~e~a~~aYq~A~ei 108 (220)
--+|...++.++|....++|+. ..+..+..+ ..|+. +.|..+|++|+.+
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~------------~~A~~~~~~al~~ 101 (172)
T PRK02603 42 GMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEH------------DKALEYYHQALEL 101 (172)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCH------------HHHHHHHHHHHHh
Confidence 3455678999999999988873 233333333 22233 7788888888864
No 35
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=58.04 E-value=40 Score=30.57 Aligned_cols=84 Identities=19% Similarity=0.261 Sum_probs=52.0
Q ss_pred cccccccchhHHHHHhhcChHHHHHHHHHHHHHH---------HHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q psy5989 38 IRLGLALNFSVFYYEILNSPDKACQLAKQVCAHY---------FCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDI 108 (220)
Q Consensus 38 irLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~---------~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~ei 108 (220)
+||+|+|+| =--+|+..|...-++|+.+- +-+++.- .--.+.|.+.|++|+.+
T Consensus 37 arlqLal~Y-----L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~-------------~Ge~~~A~e~YrkAlsl 98 (250)
T COG3063 37 ARLQLALGY-----LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQK-------------LGENDLADESYRKALSL 98 (250)
T ss_pred HHHHHHHHH-----HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-------------cCChhhHHHHHHHHHhc
Confidence 789999987 23456666665555555431 1112211 22236889999999853
Q ss_pred HHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHH
Q psy5989 109 AKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 148 (220)
Q Consensus 109 A~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~A 148 (220)
+|-.=-+.-||.-|++.- +.+++|...=.+|
T Consensus 99 --------~p~~GdVLNNYG~FLC~q-g~~~eA~q~F~~A 129 (250)
T COG3063 99 --------APNNGDVLNNYGAFLCAQ-GRPEEAMQQFERA 129 (250)
T ss_pred --------CCCccchhhhhhHHHHhC-CChHHHHHHHHHH
Confidence 333444557899999996 4888876654444
No 36
>COG4387 Mu-like prophage protein gp36 [Function unknown]
Probab=56.70 E-value=45 Score=27.48 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhhhhh--------hhhhHHH-HHhhcccccchhHHHHHHHHHHHH-HhhHHHHHHHHHHhHhcCcee
Q psy5989 143 HLAKQVKYSCIGASRDTK--------RSVCLLC-EIFHTMSSSGEKEELVQRAKLAEQ-AERYDDMAAAMKAVTETGVEY 212 (220)
Q Consensus 143 ~iAk~AfdeAi~eld~~~--------~d~~lil-q~L~~~s~~s~r~~~~~~akl~eq-~ery~~m~~~~~~~~~~~~el 212 (220)
..+++|+++|-+++|+-- ++.-.|+ +.--+.. -=...-.++++| -.||++-|.+.++|++-+..|
T Consensus 33 ~~aq~AL~DAsa~IDsYL~~RytlPle~~p~vLvr~CC~IA-----~Y~L~~~r~Tdq~r~rYe~av~~L~~va~G~V~l 107 (139)
T COG4387 33 AKAQEALEDASAEIDSYLGGRYTLPLETVPAVLVRHCCDIA-----RYRLCKNRATDQARQRYEDAVRFLEKVASGAVSL 107 (139)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccHHHHHHHHHHH-----HHHHhhhhhhHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 467999999999998331 1111111 1111111 011233457888 589999999999999887777
Q ss_pred ceec
Q psy5989 213 GIYS 216 (220)
Q Consensus 213 ~~~~ 216 (220)
.|+.
T Consensus 108 Gvdd 111 (139)
T COG4387 108 GVDD 111 (139)
T ss_pred ccCC
Confidence 7753
No 37
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=51.80 E-value=1.7e+02 Score=25.78 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHH------------HHHHHHHHHh--cC
Q psy5989 15 DDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVC------------AHYFCFYFFL--MN 80 (220)
Q Consensus 15 e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~------------~d~~~~~~~~--~~ 80 (220)
++|.++|..|.+.-.+ ..+|..-+-++.-+.-.|.-. ++++|+...++|+ +..+..++++ ..
T Consensus 52 ~~A~~ay~kAa~~~~~---~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 52 EKAAEAYEKAADCYEK---LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ 127 (282)
T ss_dssp HHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred chhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Q ss_pred -CCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989 81 -DPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY 150 (220)
Q Consensus 81 -~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd 150 (220)
++. ++|.++|++|.++-.. .-.|...+-.++-..-.+--+++.++|+.+-.+...
T Consensus 128 ~~d~------------e~Ai~~Y~~A~~~y~~---e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 128 LGDY------------EKAIEYYQKAAELYEQ---EGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp T--H------------HHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCCH------------HHHHHHHHHHHHHHHH---CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 38
>KOG2002|consensus
Probab=50.50 E-value=51 Score=35.26 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhh--cCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHH---------HHHHHHh--cCCCCCC
Q psy5989 19 KAYQQAFEISKS--KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHY---------FCFYFFL--MNDPEFS 85 (220)
Q Consensus 19 ~aYq~A~eiA~~--~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~---------~~~~~~~--~~~~e~~ 85 (220)
++|+.|+..-.. ...|.||.-|...-|+-+| .+|...+|.+|..|+.-. |..+.+. ..|+.
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~-- 323 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDF-- 323 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccH--
Confidence 455555554322 4789999988777776333 678899999998777554 4555555 45566
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhccc------chhHHHHHH
Q psy5989 86 PLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLA------LNFSVFYYE 133 (220)
Q Consensus 86 ~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~------LN~SVF~yE 133 (220)
++|...|.+|...+..+ .-..-++||=. |+=|+|++|
T Consensus 324 ----------ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle~s~~~fE 366 (1018)
T KOG2002|consen 324 ----------EKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLEESKFCFE 366 (1018)
T ss_pred ----------HHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHHHHHHHHH
Confidence 89999999998765443 11122334432 556888877
No 39
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.44 E-value=41 Score=24.92 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC
Q psy5989 14 VDDSQKAYQQAFEISKSKMQPTH 36 (220)
Q Consensus 14 ~e~a~~aYq~A~eiA~~~L~pt~ 36 (220)
-..|.+......|.+.....+.+
T Consensus 14 y~~A~d~L~~~fD~~~~~~~~~~ 36 (94)
T PF12862_consen 14 YSEALDALHRYFDYAKQSNNSSS 36 (94)
T ss_pred HHHHHHHHHHHHHHHhhcccchh
Confidence 34677778888888877766665
No 40
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=49.66 E-value=29 Score=28.55 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhcccchh-HHHH-HHH--hcChHHHHHHHHHHHHHHHHhhhhh
Q psy5989 96 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNF-SVFY-YEI--INSPARACHLAKQVKYSCIGASRDT 159 (220)
Q Consensus 96 e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~-SVF~-yEI--l~~~~~A~~iAk~AfdeAi~eld~~ 159 (220)
.....+|-+++......+....|+.+...|.+ .||. .+- ....+..-.....++++|+..+..+
T Consensus 81 ~~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~m 148 (159)
T PF03755_consen 81 EELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIAM 148 (159)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777766667888889999999998 6776 331 1122334567889999999998865
No 41
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=48.25 E-value=2.6e+02 Score=26.93 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhHhc
Q psy5989 180 EELVQRAKLAEQAERYDDMAAAMKAVTET 208 (220)
Q Consensus 180 ~~~~~~akl~eq~ery~~m~~~~~~~~~~ 208 (220)
..+..++.+..+..+|++-....+++++.
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34555666666666777666666665543
No 42
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=46.55 E-value=98 Score=21.51 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHh-hh---hhhhhhh-HHHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy5989 139 ARACHLAKQVKYSCIGA-SR---DTKRSVC-LLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAV 205 (220)
Q Consensus 139 ~~A~~iAk~AfdeAi~e-ld---~~~~d~~-lilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~ 205 (220)
++|+.++++|...=-.. .+ +.|.+++ .+++.++...+...|.- |-+....|-+.++..|..
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~------l~~k~~~yl~RAE~lk~~ 68 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQA------LRQKMKEYLERAEKLKEY 68 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHH------HHHHHHHHHHHHHHHHhh
Confidence 45666666664322111 11 6687775 67777776643333332 556667888888887764
No 43
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=45.39 E-value=45 Score=22.22 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH
Q psy5989 14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA 69 (220)
Q Consensus 14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~ 69 (220)
-+.|...|++|+++ .|.||. ...|.++-|++.-+++++|....++|+.
T Consensus 19 ~~~A~~~~~~ai~~-----~p~~~~---~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL-----DPNNAE---AYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH-----STTHHH---HHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-----CCCCHH---HHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788899998875 355544 5556666555544368888887777754
No 44
>KOG4234|consensus
Probab=40.65 E-value=1.5e+02 Score=26.84 Aligned_cols=31 Identities=29% Similarity=0.272 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC-cchhcccchhHH
Q psy5989 95 VEDSQKAYQEAFDIAKSKMQPTH-PIRLGLALNFSV 129 (220)
Q Consensus 95 ~e~a~~aYq~A~eiA~~~L~pt~-PirLGL~LN~SV 129 (220)
-+.|...|+.|++++- |+. -.|-=|.+|-++
T Consensus 111 yeeA~skY~~Ale~cp----~~~~e~rsIly~Nraa 142 (271)
T KOG4234|consen 111 YEEANSKYQEALESCP----STSTEERSILYSNRAA 142 (271)
T ss_pred HHHHHHHHHHHHHhCc----cccHHHHHHHHhhhHH
Confidence 4889999999998653 221 344445556543
No 45
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=40.49 E-value=77 Score=33.73 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHH
Q psy5989 14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFC 73 (220)
Q Consensus 14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~ 73 (220)
-++|..+|+++++ +.|.||. +||+=-++|... +.++|..++++|+..++.
T Consensus 132 ~~ka~~~yer~L~-----~D~~n~~----aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 132 NKKLKGVWERLVK-----ADRDNPE----IVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred hHHHHHHHHHHHh-----cCcccHH----HHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 4577888888775 3488875 666555556555 999999999999887553
No 46
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=39.48 E-value=2.5e+02 Score=24.60 Aligned_cols=85 Identities=13% Similarity=0.037 Sum_probs=49.1
Q ss_pred HHHHHhhcChHHHHHHHHHHHH------HHHHHHHHhcCC-CCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcc-
Q psy5989 48 VFYYEILNSPDKACQLAKQVCA------HYFCFYFFLMND-PEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPI- 119 (220)
Q Consensus 48 VF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~~~~-~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~Pi- 119 (220)
-+.+.-.++.++|....++++. ..+..+..+... ++ .+.|...|++++... |.+|.
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~-----------~~eA~~~l~~~l~~~-----~~~~~~ 184 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR-----------FKEGIAFMESWRDTW-----DCSSML 184 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-----------HHHHHHHHHhhhhcc-----CCCcch
Confidence 3456678888888888888774 334444444211 11 256677777766432 22322
Q ss_pred hhcccchhHHHHHHHhcChHHHHHHHHHHH
Q psy5989 120 RLGLALNFSVFYYEIINSPARACHLAKQVK 149 (220)
Q Consensus 120 rLGL~LN~SVF~yEIl~~~~~A~~iAk~Af 149 (220)
+....++.+.++.+ .++.++|..+-+++.
T Consensus 185 ~~~~~~~la~~~~~-~G~~~~A~~~~~~~~ 213 (355)
T cd05804 185 RGHNWWHLALFYLE-RGDYEAALAIYDTHI 213 (355)
T ss_pred hHHHHHHHHHHHHH-CCCHHHHHHHHHHHh
Confidence 22233445555444 688888888877764
No 47
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=39.44 E-value=1.6e+02 Score=21.94 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=48.7
Q ss_pred CCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHH
Q psy5989 32 MQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEA 105 (220)
Q Consensus 32 L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A 105 (220)
++|.++- ...+.+..++ -.++.++|..+.+.+.. +++..+..+.. +..-.+.|...|+.+
T Consensus 12 ~~p~~~~---~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~----------~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 12 LDSEQLE---QIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ----------MLKEYEEAIDAYALA 77 (135)
T ss_pred CChhhHH---HHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 4555542 2333444444 45778888877666543 12222221110 111124555555555
Q ss_pred HHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989 106 FDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY 150 (220)
Q Consensus 106 ~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd 150 (220)
+. +.|.+ .....+.+..++ ..++.++|+..-++++.
T Consensus 78 ~~-----~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 78 AA-----LDPDD---PRPYFHAAECLL-ALGEPESALKALDLAIE 113 (135)
T ss_pred Hh-----cCCCC---hHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 43 34444 334455666444 57999998887766554
No 48
>TIGR02947 SigH_actino RNA polymerase sigma-70 factor, TIGR02947 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and (with the exception of a paralog in Thermobifida fusca YX) one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria and each gene examined is followed by an anti-sigma factor in an apparent operon.
Probab=39.00 E-value=73 Score=26.09 Aligned_cols=54 Identities=11% Similarity=0.197 Sum_probs=40.1
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHH
Q psy5989 49 FYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQE 104 (220)
Q Consensus 49 F~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~ 104 (220)
|.+-++++++.|-.+++.+|-.+++.+..+.....|.+|. ..-+.-.+.+.|.+
T Consensus 27 ~~~~~~~~~~~AEDlvQevfl~~~~~~~~~~~~~~~~~wL--~~iarN~~~d~~Rk 80 (193)
T TIGR02947 27 AALRMTRNPADAEDLVQEAYAKAFSSFHQFKPGTNLKAWL--YRILTNTYINSYRK 80 (193)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCCcchHHH--HHHHHHHHHHHHHH
Confidence 3567889999999999999999999888887666677777 44444444444443
No 49
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=38.66 E-value=2e+02 Score=22.86 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH
Q psy5989 14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA 69 (220)
Q Consensus 14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~ 69 (220)
.+.|...|+.|+.+ .|.++.......|.++ .|..++++++|....++|+.
T Consensus 51 ~~~A~~~~~~al~l-----~~~~~~~~~~~~~lg~-~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 51 YAEALQNYYEAMRL-----EIDPYDRSYILYNIGL-IHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHhc-----cccchhhHHHHHHHHH-HHHHcCCHHHHHHHHHHHHH
Confidence 35667777777664 2333322223344433 45567999999999888874
No 50
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=36.64 E-value=25 Score=21.51 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHH
Q psy5989 101 AYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARAC 142 (220)
Q Consensus 101 aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~ 142 (220)
+|++|++ +.|.||. ...|++++|+. .++.++|+
T Consensus 1 ~y~kAie-----~~P~n~~---a~~nla~~~~~-~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIE-----LNPNNAE---AYNNLANLYLN-QGDYEEAI 33 (34)
T ss_pred ChHHHHH-----HCCCCHH---HHHHHHHHHHH-CcCHHhhc
Confidence 4777775 4577765 45778888876 58888875
No 51
>PRK11189 lipoprotein NlpI; Provisional
Probab=36.11 E-value=3.1e+02 Score=24.29 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=52.1
Q ss_pred HHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchh
Q psy5989 50 YYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRL 121 (220)
Q Consensus 50 ~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirL 121 (220)
.|.-+++.++|+..-++|+. +.+..+..+ ..++. +.|..+|++|++ +.|.++.-
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~------------~~A~~~~~~Al~-----l~P~~~~a- 134 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNF------------DAAYEAFDSVLE-----LDPTYNYA- 134 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH------------HHHHHHHHHHHH-----hCCCCHHH-
Confidence 35567888888877776653 444444444 22233 678889998885 56777643
Q ss_pred cccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989 122 GLALNFSVFYYEIINSPARACHLAKQVKY 150 (220)
Q Consensus 122 GL~LN~SVF~yEIl~~~~~A~~iAk~Afd 150 (220)
.+|.++-++. .++.++|+...++++.
T Consensus 135 --~~~lg~~l~~-~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 135 --YLNRGIALYY-GGRYELAQDDLLAFYQ 160 (296)
T ss_pred --HHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3555665555 5888888887777664
No 52
>PRK12544 RNA polymerase sigma factor; Provisional
Probab=35.54 E-value=72 Score=26.98 Aligned_cols=54 Identities=7% Similarity=-0.101 Sum_probs=39.6
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHH
Q psy5989 48 VFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQ 103 (220)
Q Consensus 48 VF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq 103 (220)
.|.|-++++.+.|-.+++++|-.++..+..+.....|++|. -.-+.-.+.+.+.
T Consensus 33 ~~~~~~~~d~~~AEDivQEvfikl~~~~~~~~~~~~~~~WL--~~IarN~~~d~~R 86 (206)
T PRK12544 33 KFATLQLSDLHLAEDAVQEALIGALKNADSFAGRAAFKTWV--FAILKNKIIDLLR 86 (206)
T ss_pred HHHHHHhCCHhHHHHHHHHHHHHHHHHHHhcCCcccHHHHH--HHHHHHHHHHHHH
Confidence 34556889999999999999999999988887666677777 3333334444443
No 53
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=35.15 E-value=2.1e+02 Score=22.60 Aligned_cols=101 Identities=12% Similarity=0.035 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------HHHHHHHhcCCCCCCCCccccH
Q psy5989 19 KAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------YFCFYFFLMNDPEFSPLFPCSL 92 (220)
Q Consensus 19 ~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------~~~~~~~~~~~~e~~~~~~~k~ 92 (220)
..|+.|++ +.|.++..+|. -+--.++.++|....+.++.. ++..+..+.. +.
T Consensus 14 ~~~~~al~-----~~p~~~~~~g~-------~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~----------~~ 71 (144)
T PRK15359 14 DILKQLLS-----VDPETVYASGY-------ASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM----------ML 71 (144)
T ss_pred HHHHHHHH-----cCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH----------HH
Confidence 44555543 45555443333 334577888888777665432 2222222210 22
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989 93 AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY 150 (220)
Q Consensus 93 ~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd 150 (220)
.-.+.|..+|+.|+. +.|.+|.-+ .|.++ .+.-++++++|+....+|..
T Consensus 72 g~~~~A~~~y~~Al~-----l~p~~~~a~---~~lg~-~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 72 KEYTTAINFYGHALM-----LDASHPEPV---YQTGV-CLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred hhHHHHHHHHHHHHh-----cCCCCcHHH---HHHHH-HHHHcCCHHHHHHHHHHHHH
Confidence 224678888888874 456666432 22222 23347998888776666544
No 54
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=33.96 E-value=73 Score=26.22 Aligned_cols=53 Identities=8% Similarity=-0.024 Sum_probs=37.6
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHH
Q psy5989 49 FYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQ 103 (220)
Q Consensus 49 F~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq 103 (220)
|.+-++++++.|-.+++.+|-.+++..-.+.....|.+|. ..-+.-.+.+.+.
T Consensus 23 ~~~~~~~d~~~AeDivQe~flk~~~~~~~~~~~~~~~~wL--~~Ia~n~~~d~~R 75 (189)
T PRK12530 23 FATLQLKDADLAEDVVQEALVSAYKNADSFKGQSALKTWI--FAILKNKIIDLIR 75 (189)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHhchhccCCccHHHHH--HHHHHHHHHHHHH
Confidence 3446789999999999999999999887776655666776 3333334444433
No 55
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=33.68 E-value=1.9e+02 Score=26.65 Aligned_cols=80 Identities=13% Similarity=0.058 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------HHHHHHHh--cCCCCCC
Q psy5989 14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------YFCFYFFL--MNDPEFS 85 (220)
Q Consensus 14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------~~~~~~~~--~~~~e~~ 85 (220)
-+.|...|++|+. +.|.+|- ..+|.+.-| .-+++.+.|...++.|+.. .+..+..+ ..++.
T Consensus 18 ~~~Ai~~~~~Al~-----~~P~~~~---a~~~~a~~~-~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~-- 86 (356)
T PLN03088 18 FALAVDLYTQAID-----LDPNNAE---LYADRAQAN-IKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY-- 86 (356)
T ss_pred HHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH--
Confidence 4467777777765 4555553 334444433 4578999999998888652 22222222 22233
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q psy5989 86 PLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPI 119 (220)
Q Consensus 86 ~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~Pi 119 (220)
+.|..+|++|+. +.|.||-
T Consensus 87 ----------~eA~~~~~~al~-----l~P~~~~ 105 (356)
T PLN03088 87 ----------QTAKAALEKGAS-----LAPGDSR 105 (356)
T ss_pred ----------HHHHHHHHHHHH-----hCCCCHH
Confidence 677778877774 4577764
No 56
>KOG4162|consensus
Probab=32.56 E-value=1e+02 Score=32.36 Aligned_cols=56 Identities=20% Similarity=0.324 Sum_probs=40.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH
Q psy5989 5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA 69 (220)
Q Consensus 5 ~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~ 69 (220)
....+|+..-.++.++|++|.+ ..|+||. ...+-|++ |-+.++.+.|...++.+++
T Consensus 451 ~~~seR~~~h~kslqale~av~-----~d~~dp~---~if~lalq-~A~~R~l~sAl~~~~eaL~ 506 (799)
T KOG4162|consen 451 NLKSERDALHKKSLQALEEAVQ-----FDPTDPL---VIFYLALQ-YAEQRQLTSALDYAREALA 506 (799)
T ss_pred CChHHHHHHHHHHHHHHHHHHh-----cCCCCch---HHHHHHHH-HHHHHhHHHHHHHHHHHHH
Confidence 3467888888999999999875 6899992 22333444 4567778888888877754
No 57
>PF04698 Rab_eff_C: Rab effector MyRIP/melanophilin C-terminus; InterPro: IPR006788 MOBP is abundantly expressed in central nervous system myelin, and shares several characteristics with myelin basic protein (MBP), in terms of regional distribution and function. MOBP has been shown to be essential for normal arrangement of the radial component in central nervous system myelin [, ].
Probab=32.53 E-value=58 Score=33.66 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=24.6
Q ss_pred HHHHHH-----HhcChHHHHHHHHHHHHHHHHhhh
Q psy5989 128 SVFYYE-----IINSPARACHLAKQVKYSCIGASR 157 (220)
Q Consensus 128 SVF~yE-----Il~~~~~A~~iAk~AfdeAi~eld 157 (220)
|.||-. ++.-...|.++|.+|+++||..-|
T Consensus 25 StFYrQsEgHSM~dTl~VALRVAEEAIeEAIsKAE 59 (714)
T PF04698_consen 25 STFYRQSEGHSMADTLAVALRVAEEAIEEAISKAE 59 (714)
T ss_pred chhhhccccchHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 567755 556677899999999999999876
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=32.44 E-value=2.4e+02 Score=21.89 Aligned_cols=136 Identities=14% Similarity=0.136 Sum_probs=76.5
Q ss_pred HHHhhcChHHHHHHHHHHHHH------HHHHHHHh--cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchh
Q psy5989 50 YYEILNSPDKACQLAKQVCAH------YFCFYFFL--MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRL 121 (220)
Q Consensus 50 ~yEIl~~~~~A~~lAk~A~~d------~~~~~~~~--~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirL 121 (220)
.|--.++.++|....++++.. .+..+..+ ..++ .+.|...|++++++ .|.+|.
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~-----~~~~~~-- 100 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE------------LEKAEDSFRRALTL-----NPNNGD-- 100 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhh-----CCCCHH--
Confidence 334567888888887776532 11222222 1122 26778888888753 455553
Q ss_pred cccchhHHHHHHHhcChHHHHHHHHHHHHHHHHh--------hh------hhhhhhh-HHHHHhhcccccchhHHHHHHH
Q psy5989 122 GLALNFSVFYYEIINSPARACHLAKQVKYSCIGA--------SR------DTKRSVC-LLCEIFHTMSSSGEKEELVQRA 186 (220)
Q Consensus 122 GL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~e--------ld------~~~~d~~-lilq~L~~~s~~s~r~~~~~~a 186 (220)
...|++.+++. .++.++|....+++.+..... +- .-+.++. .+-+.+.... ..-+-...++
T Consensus 101 -~~~~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la 176 (234)
T TIGR02521 101 -VLNNYGTFLCQ-QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP--QRPESLLELA 176 (234)
T ss_pred -HHHHHHHHHHH-cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CChHHHHHHH
Confidence 34455555544 688999988888877532100 00 1122222 2222222111 1234567788
Q ss_pred HHHHHHhhHHHHHHHHHHhHhc
Q psy5989 187 KLAEQAERYDDMAAAMKAVTET 208 (220)
Q Consensus 187 kl~eq~ery~~m~~~~~~~~~~ 208 (220)
.+..+..+|++-...++++...
T Consensus 177 ~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 177 ELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888889999988888887664
No 59
>PRK12522 RNA polymerase sigma factor; Provisional
Probab=31.87 E-value=1.3e+02 Score=23.98 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=40.7
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHH
Q psy5989 50 YYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQE 104 (220)
Q Consensus 50 ~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~ 104 (220)
.+...++++.|=.+.+.+|-.+++.+..+..+..|.+|. ..-+...+.+.+.+
T Consensus 20 ~~~~~~~~~daeDvvQe~~i~l~~~~~~~~~~~~~~~wl--~~i~~n~~~d~~Rk 72 (173)
T PRK12522 20 CYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWI--TTICVRTFYDFYRK 72 (173)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHcCCccchHHHH--HHHHHHHHHHHHHH
Confidence 456788999999999999999999999987766777787 44444555555543
No 60
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=31.53 E-value=3.7e+02 Score=23.81 Aligned_cols=26 Identities=4% Similarity=-0.082 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHhc
Q psy5989 183 VQRAKLAEQAERYDDMAAAMKAVTET 208 (220)
Q Consensus 183 ~~~akl~eq~ery~~m~~~~~~~~~~ 208 (220)
..++.+-....++++.+...+++.+.
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555667788888777776654
No 61
>KOG2002|consensus
Probab=30.66 E-value=6.7e+02 Score=27.28 Aligned_cols=115 Identities=20% Similarity=0.243 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHH------HHHHHHHHHHHh-cCCCCCCCCc
Q psy5989 16 DSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ------VCAHYFCFYFFL-MNDPEFSPLF 88 (220)
Q Consensus 16 ~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~------A~~d~~~~~~~~-~~~~e~~~~~ 88 (220)
.|+.-|+.|+.+.. . .+++ .|+|..++| =-++++++|..-=.. .....+.=+..+ ...++
T Consensus 182 ~al~yyk~al~inp-~-~~aD-~rIgig~Cf-----~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d----- 248 (1018)
T KOG2002|consen 182 GALKYYKKALRINP-A-CKAD-VRIGIGHCF-----WKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFND----- 248 (1018)
T ss_pred HHHHHHHHHHhcCc-c-cCCC-ccchhhhHH-----HhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccc-----
Confidence 57888888887653 2 2333 356665443 445555554321111 122333334444 22222
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHh
Q psy5989 89 PCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGA 155 (220)
Q Consensus 89 ~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~e 155 (220)
.+...++.+-.+.|+ ...|.||.-|...-|+=+| .+|.+.+|.+|-.|+...+..
T Consensus 249 ---~~s~~~~~~ll~~ay-----~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 249 ---SDSYKKGVQLLQRAY-----KENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred ---hHHHHHHHHHHHHHH-----hhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhh
Confidence 122334444444444 4689999988888777444 589999999999998877544
No 62
>PRK12545 RNA polymerase sigma factor; Provisional
Probab=30.53 E-value=83 Score=26.24 Aligned_cols=54 Identities=9% Similarity=-0.041 Sum_probs=39.2
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHH
Q psy5989 49 FYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQE 104 (220)
Q Consensus 49 F~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~ 104 (220)
|.+-++++++.|-.+++.+|-.+++.+..+.....|.+|. ..-+.-.+.+.+.+
T Consensus 24 ~~~~~~~d~~~AEDivQe~fl~~~~~~~~~~~~~~~~~WL--~~IarN~~~d~~Rk 77 (201)
T PRK12545 24 FARLQLRDADAAEDAVQEALAAAWSQAGRFAGQSAHKTWV--FGILRNKLIDTLRA 77 (201)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhhhccccchHHHHH--HHHHHHHHHHHHHh
Confidence 4556889999999999999999999888876666667776 33344445554443
No 63
>PRK12520 RNA polymerase sigma factor; Provisional
Probab=30.39 E-value=93 Score=25.42 Aligned_cols=52 Identities=8% Similarity=-0.070 Sum_probs=38.1
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHH
Q psy5989 50 YYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQ 103 (220)
Q Consensus 50 ~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq 103 (220)
.+-++++++.|-.+++.+|-.+++.+..+.....|.+|. ..-+.-.+.+.+.
T Consensus 19 a~~~~~~~~~AeDivQevfl~~~~~~~~~~~~~~~~~WL--~~ia~n~~~d~~R 70 (191)
T PRK12520 19 ARLQLRDPALAEDAVSETLLAVLEHPERFAGQSSLKTYL--VGILKHKIIDAIR 70 (191)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhhhhcccccHHHHH--HHHHHHHHHHHHH
Confidence 445789999999999999999999988887666666776 3333344444443
No 64
>TIGR02943 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02943 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=30.16 E-value=85 Score=25.87 Aligned_cols=53 Identities=9% Similarity=-0.016 Sum_probs=37.9
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHH
Q psy5989 49 FYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQ 103 (220)
Q Consensus 49 F~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq 103 (220)
|.+..+++++.|-.+++.+|-.+++....+.....|.+|. -.-+.-.+.+.+.
T Consensus 18 ~~~~~~~~~~dAeDivQevfl~l~~~~~~~~~~~~~~~wL--~~iarn~~~d~~R 70 (188)
T TIGR02943 18 FARLQLRDRDLAEDAVQETLLAALSHRDSFAGRSALKTWL--FAILKNKIIDALR 70 (188)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhhhhccccHHHHHH--HHHHHHHHHHHHH
Confidence 4556788999999999999999999888876666666666 3333334444443
No 65
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=29.22 E-value=2.9e+02 Score=21.87 Aligned_cols=90 Identities=11% Similarity=-0.042 Sum_probs=49.7
Q ss_pred ccccchhHHHHHhhcChHHHHHHHHHHHHH---------HHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q psy5989 41 GLALNFSVFYYEILNSPDKACQLAKQVCAH---------YFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKS 111 (220)
Q Consensus 41 GLaLN~SVF~yEIl~~~~~A~~lAk~A~~d---------~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~ 111 (220)
..+++.....+.-.++.++|....++|+.. .+..+..+... ..-.+.|..+|+.|+.+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~----------~g~~~eA~~~~~~Al~~--- 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS----------NGEHTKALEYYFQALER--- 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHh---
Confidence 334444555666778899998888877543 22222222111 11226788888888754
Q ss_pred cCCCCCcchhcccchhHHHHHH------HhcChHHHHHHHHHH
Q psy5989 112 KMQPTHPIRLGLALNFSVFYYE------IINSPARACHLAKQV 148 (220)
Q Consensus 112 ~L~pt~PirLGL~LN~SVF~yE------Il~~~~~A~~iAk~A 148 (220)
.|.++ +...|.++.++. -+++.+.|....++|
T Consensus 102 --~~~~~---~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 102 --NPFLP---QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred --CcCcH---HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 34433 333455555552 356766665555444
No 66
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=28.97 E-value=1.7e+02 Score=25.67 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHH---hhh--------hhhhh
Q psy5989 94 VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIG---ASR--------DTKRS 162 (220)
Q Consensus 94 ~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~---eld--------~~~~d 162 (220)
.-+.|+++|++|.. ....| ..++...+|+.|||..||.=.+ .|| .||++
T Consensus 14 ~Ye~A~~~Ye~av~------ng~~~--------------q~~Kql~KA~NIAKse~drdaavqkKLerMAe~Am~~MYke 73 (199)
T PF08717_consen 14 AYETARQAYEEAVA------NGSSP--------------QELKQLKKAMNIAKSEFDRDAAVQKKLERMAEQAMTQMYKE 73 (199)
T ss_dssp HHHHHHHHHHHHHH------CT--H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHHHHH------cCCCH--------------HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999875 12222 2367788999999999986443 243 66877
Q ss_pred h
Q psy5989 163 V 163 (220)
Q Consensus 163 ~ 163 (220)
+
T Consensus 74 a 74 (199)
T PF08717_consen 74 A 74 (199)
T ss_dssp C
T ss_pred H
Confidence 4
No 67
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=28.87 E-value=1.8e+02 Score=19.35 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHH
Q psy5989 96 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVK 149 (220)
Q Consensus 96 e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Af 149 (220)
+.|.++++.++.+ +|-...+.++.+..++. +++.++|...-.++.
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 5667777766643 44455566677777776 577777766555554
No 68
>KOG1155|consensus
Probab=27.51 E-value=4e+02 Score=26.81 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccccc------chhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy5989 14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLAL------NFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPL 87 (220)
Q Consensus 14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaL------N~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~ 87 (220)
...|.++|+.|+++....... =-.||-+- =|+.|||+--.....--...-.|+|+.|.
T Consensus 380 t~AAi~sYRrAvdi~p~DyRA--WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~-------------- 443 (559)
T KOG1155|consen 380 THAAIESYRRAVDINPRDYRA--WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYE-------------- 443 (559)
T ss_pred cHHHHHHHHHHHhcCchhHHH--HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHH--------------
Confidence 467899999999875432110 01244331 15777774111100001122456777763
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989 88 FPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY 150 (220)
Q Consensus 88 ~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd 150 (220)
|-.-.+.|.+||+.|+.... | =|.+|+.=-=.||-+++.++|-+.=.+-++
T Consensus 444 ---kl~~~~eAiKCykrai~~~d-----t----e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 444 ---KLNRLEEAIKCYKRAILLGD-----T----EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ---HhccHHHHHHHHHHHHhccc-----c----chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 23335789999999996543 3 244555545567778887776554444443
No 69
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=27.49 E-value=4.3e+02 Score=24.29 Aligned_cols=45 Identities=9% Similarity=0.065 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHH
Q psy5989 96 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVK 149 (220)
Q Consensus 96 e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Af 149 (220)
+.|...+++|++ +.|.+|- ..++.++-++. +++.+.|+...+++.
T Consensus 53 ~eAl~~~~~Al~-----l~P~~~~---a~~~lg~~~~~-lg~~~eA~~~~~~al 97 (356)
T PLN03088 53 TEAVADANKAIE-----LDPSLAK---AYLRKGTACMK-LEEYQTAKAALEKGA 97 (356)
T ss_pred HHHHHHHHHHHH-----hCcCCHH---HHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 566777777765 3455543 23444544444 578777776555443
No 70
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=27.40 E-value=1.3e+02 Score=19.31 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q psy5989 96 EDSQKAYQEAFDIAKSKMQPT 116 (220)
Q Consensus 96 e~a~~aYq~A~eiA~~~L~pt 116 (220)
+.|..=|++++++-++.+||.
T Consensus 18 ~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 18 EQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 788888999999988877773
No 71
>TIGR02983 SigE-fam_strep RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Probab=27.26 E-value=1.5e+02 Score=23.32 Aligned_cols=51 Identities=10% Similarity=0.174 Sum_probs=36.2
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHH
Q psy5989 51 YEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQ 103 (220)
Q Consensus 51 yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq 103 (220)
+-++++++.|-.+.+.+|-.++..+-.+.....|.+|. ..-+...+.+.+.
T Consensus 24 ~~~~~~~~~aeDivQe~f~~~~~~~~~~~~~~~~~~wl--~~i~~n~~~d~~r 74 (162)
T TIGR02983 24 YLLTGDPHEAEDLVQEALVRTYVRWDRIRDPDAPDAYV--RRVLVNLARSRWR 74 (162)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHH--HHHHHHHHHHHHH
Confidence 34678999999999999999999887775556666666 4444444444443
No 72
>PRK12516 RNA polymerase sigma factor; Provisional
Probab=27.23 E-value=1.2e+02 Score=24.97 Aligned_cols=41 Identities=10% Similarity=0.132 Sum_probs=32.3
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q psy5989 48 VFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLF 88 (220)
Q Consensus 48 VF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~ 88 (220)
-|.+-++++.+.|-.+++++|-.+++.+-.+.....|.+|.
T Consensus 25 ~~a~~~~~~~~~AEDivQevfl~~~~~~~~~~~~~~~~awL 65 (187)
T PRK12516 25 AFAVSLIGRHDRADDLVQDTIMKAWAKQDHFEVGTNMKAWL 65 (187)
T ss_pred HHHHHHcCCHhHHHHHHHHHHHHHHHhhhccCCcccHHHHH
Confidence 34567889999999999999999998777665555566665
No 73
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=26.53 E-value=1.1e+02 Score=24.12 Aligned_cols=51 Identities=8% Similarity=0.062 Sum_probs=36.3
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHH
Q psy5989 50 YYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQ 103 (220)
Q Consensus 50 ~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq 103 (220)
.+-++++++.|-.+++++|-.+++.+..+... .|.+|. ..-+.-.+.+.+.
T Consensus 12 ~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~-~~~~wl--~~ia~n~~~d~~R 62 (160)
T PRK09642 12 IFSILRHEEDAKDVTQEVFVKIHASLPNYQFR-GLKTWM--ARIATNHAIDYKR 62 (160)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcccccccc-hhHHHH--HHHHHHHHHHHHH
Confidence 45688999999999999999999877666543 467776 4444444444444
No 74
>KOG1679|consensus
Probab=26.42 E-value=45 Score=30.26 Aligned_cols=67 Identities=30% Similarity=0.326 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCccccHHHHHH---HHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHH
Q psy5989 65 KQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVED---SQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARA 141 (220)
Q Consensus 65 k~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~---a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A 141 (220)
--|+++=..|.+++..+-|-..+- .-+.+++. --.+|++|+++|++ +-|.-|+ |
T Consensus 181 g~alaKELIftarvl~g~eA~~lG-lVnhvv~qneegdaa~~kal~lA~e-ilp~gPi---------------------a 237 (291)
T KOG1679|consen 181 GVALAKELIFTARVLNGAEAAKLG-LVNHVVEQNEEGDAAYQKALELARE-ILPQGPI---------------------A 237 (291)
T ss_pred hHHHHHhHhhhheeccchhHHhcc-hHHHHHhcCccccHHHHHHHHHHHH-hccCCch---------------------h
Confidence 346666677777777665511111 11223322 23799999999984 6667776 7
Q ss_pred HHHHHHHHHHHHH
Q psy5989 142 CHLAKQVKYSCIG 154 (220)
Q Consensus 142 ~~iAk~AfdeAi~ 154 (220)
+++||-|++..+.
T Consensus 238 vr~aKlAIn~G~e 250 (291)
T KOG1679|consen 238 VRLAKLAINLGME 250 (291)
T ss_pred hhHHHHHhccCce
Confidence 8899999888764
No 75
>PRK12511 RNA polymerase sigma factor; Provisional
Probab=26.25 E-value=1.6e+02 Score=24.26 Aligned_cols=54 Identities=4% Similarity=-0.047 Sum_probs=39.0
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHH
Q psy5989 48 VFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQ 103 (220)
Q Consensus 48 VF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq 103 (220)
-|.+-++++.+.|-.+++.+|-.++.....+.....|.+|. ..-+.-.+.+.|.
T Consensus 19 ~~~~~~~~~~~dAEDivQe~flkl~~~~~~~~~~~~~~~WL--~~Iarn~~id~~R 72 (182)
T PRK12511 19 RYARSLTRDSAEAEDLVHDALVRALERRASFRSGGNLRTWL--MSILHNAFIDELR 72 (182)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhHHhcCCccchHHHH--HHHHHHHHHHHHH
Confidence 34557889999999999999999999888887666677777 3333334444333
No 76
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=24.96 E-value=2.5e+02 Score=22.43 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcch
Q psy5989 69 AHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIR 120 (220)
Q Consensus 69 ~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~Pir 120 (220)
|++|..++....+++ .|-.-.-.|.+||.++.. |+|.-+.-
T Consensus 40 G~if~~lA~~ten~d------~k~~yLl~sve~~s~a~~-----Lsp~~A~~ 80 (111)
T PF04781_consen 40 GTIFYKLAKKTENPD------VKFRYLLGSVECFSRAVE-----LSPDSAHS 80 (111)
T ss_pred hHHHHHHHHhccCch------HHHHHHHHhHHHHHHHhc-----cChhHHHH
Confidence 446766676655555 366667788888888874 44544443
No 77
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=24.08 E-value=73 Score=24.28 Aligned_cols=38 Identities=26% Similarity=0.259 Sum_probs=31.4
Q ss_pred HHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5989 167 CEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKA 204 (220)
Q Consensus 167 lq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~ 204 (220)
--|=++|+.+++++.+.-+-|-+|+-.||++-...|..
T Consensus 35 kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~ 72 (85)
T PF14887_consen 35 KAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRS 72 (85)
T ss_dssp HHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 35556799999999999999999999999976665544
No 78
>KOG0301|consensus
Probab=23.99 E-value=1.5e+02 Score=30.77 Aligned_cols=74 Identities=18% Similarity=0.145 Sum_probs=52.5
Q ss_pred cccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhhcccccchhHHHHHHHHH---HHHHhhHHH
Q psy5989 122 GLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVC-LLCEIFHTMSSSGEKEELVQRAKL---AEQAERYDD 197 (220)
Q Consensus 122 GL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld~~~~d~~-lilq~L~~~s~~s~r~~~~~~akl---~eq~ery~~ 197 (220)
-|+|||||...+-. +...-+++.-.|+...+...++. +++ =+++-|.+-+ +.-...+++||. ..++.++.+
T Consensus 653 tlaln~sv~l~~~~-~~~~~~~~l~~ai~~~~e~~~d~--EA~yR~l~AlgtL~--t~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 653 TLALNYSVLLIQDN-EQLEGKEVLLSAISTLLEPVDDL--EAIYRLLVALGTLM--TVDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHHHHHHHhcc-cccchHHHHHHHHHhhcccchhH--HHHHHHHHHHHhhc--cccHHHHHHHHhcCHHHHHHHHHH
Confidence 46899999988843 33677788888888888877777 344 5677777766 555678888884 444777766
Q ss_pred HHH
Q psy5989 198 MAA 200 (220)
Q Consensus 198 m~~ 200 (220)
-++
T Consensus 728 ~~~ 730 (745)
T KOG0301|consen 728 AVS 730 (745)
T ss_pred hcc
Confidence 554
No 79
>KOG1107|consensus
Probab=23.74 E-value=2.8e+02 Score=28.94 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccc-ccchhHHHHHhhcC
Q psy5989 14 VDDSQKAYQQAFEISKSKMQPTHPIRLGL-ALNFSVFYYEILNS 56 (220)
Q Consensus 14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGL-aLN~SVF~yEIl~~ 56 (220)
-++-..++++|..||.+.|.|+-++-|-. +||=-.||||-=|+
T Consensus 656 GkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n~ 699 (760)
T KOG1107|consen 656 GKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGND 699 (760)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCCC
Confidence 56678999999999999999999877754 78877777876665
No 80
>KOG0985|consensus
Probab=23.44 E-value=6.8e+02 Score=28.00 Aligned_cols=126 Identities=19% Similarity=0.206 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHH
Q psy5989 70 HYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVK 149 (220)
Q Consensus 70 d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Af 149 (220)
..|.||-++++=+- | --.-+.-..+.|++|+.|=++.=--+ -++| | +-|-.++.+.|.+.|.+.=
T Consensus 1038 rVm~YI~rLdnyDa--~----~ia~iai~~~LyEEAF~ifkkf~~n~------~A~~--V-Lie~i~~ldRA~efAe~~n 1102 (1666)
T KOG0985|consen 1038 RVMEYINRLDNYDA--P----DIAEIAIENQLYEEAFAIFKKFDMNV------SAIQ--V-LIENIGSLDRAYEFAERCN 1102 (1666)
T ss_pred HHHHHHHHhccCCc--h----hHHHHHhhhhHHHHHHHHHHHhcccH------HHHH--H-HHHHhhhHHHHHHHHHhhC
Confidence 47888888854422 0 11223345678999998876421111 1111 1 3345567777777666542
Q ss_pred HHH------HHhhh-hhhhhhhHHHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhcCceeceec
Q psy5989 150 YSC------IGASR-DTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGIYS 216 (220)
Q Consensus 150 deA------i~eld-~~~~d~~lilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~~~el~~~~ 216 (220)
+.+ -+.|+ .+-+|+ +..-.+.-+-++......+|++++.|||.|.+..-+-+..-|=-|++
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dA------ieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDA------IESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHH------HHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH
Confidence 221 12222 122222 22223556667777788889999999999999655555554444443
No 81
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=23.06 E-value=2.8e+02 Score=19.59 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHH
Q psy5989 96 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYS 151 (220)
Q Consensus 96 e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afde 151 (220)
+.|...|+.++. ..|.||......++.+..++. ++++++|...-.++++.
T Consensus 56 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVK-----KYPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHH-----HCCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 556666666653 357777554445555555544 68888887776665544
No 82
>TIGR02948 SigW_bacill RNA polymerase sigma-W factor. This sigma factor is restricted to certain lineages of the order Bacillales.
Probab=22.45 E-value=2.1e+02 Score=22.88 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=37.1
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHH
Q psy5989 51 YEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQ 103 (220)
Q Consensus 51 yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq 103 (220)
+-++++.+.|-.+.+.+|-.++.....+.....|.+|. ..-+.-.+.+.+.
T Consensus 36 ~~~~~~~~~aeDlvQe~~l~l~~~~~~~~~~~~~~~wl--~~i~~n~~~~~~r 86 (187)
T TIGR02948 36 YRMLGNVHEAEDVAQEAFIRAYTNIDTYDIQRKFSTWL--YRIATNLTIDRLR 86 (187)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhHHhcCCCCchHHHH--HHHHHHHHHHHHH
Confidence 35678999999999999999999888776655677776 4444444555444
No 83
>TIGR02950 SigM_subfam RNA polymerase sigma factor, SigM family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot: SIGM_BACSU) and is activated by various stressors.
Probab=22.21 E-value=2.9e+02 Score=21.25 Aligned_cols=39 Identities=10% Similarity=0.266 Sum_probs=32.2
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q psy5989 49 FYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLF 88 (220)
Q Consensus 49 F~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~ 88 (220)
|.+-++++++.|-.+.+.+|-.++.-+-.+.. ..|..|.
T Consensus 11 ~~~~~~~~~~~aeD~~Qe~~~~l~~~~~~~~~-~~f~~wl 49 (154)
T TIGR02950 11 YLYRLTKDKHLAEDLLQETFLKAYIHLHSFKD-SSIKPWL 49 (154)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhHHHhcC-CchHHHH
Confidence 34567899999999999999999988877766 6667777
No 84
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=21.83 E-value=1.4e+02 Score=22.55 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=47.7
Q ss_pred cCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhhcccccchhHHHHHHHHHHH
Q psy5989 112 KMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAE 190 (220)
Q Consensus 112 ~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld~~~~d~~lilq~L~~~s~~s~r~~~~~~akl~e 190 (220)
-..|.+|.+.|+.= ||++..+|-.=-.|-++.-......+++..+|..+|...-..-- +..+.+..+|+--+
T Consensus 25 F~~pv~~~~~~~p~-----Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN--~~~s~~~~~A~~l~ 96 (103)
T cd05500 25 FLVPVDPVKLNIPH-----YPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFN--GPEHPVSQMGKRLQ 96 (103)
T ss_pred hcCCCCcccccCCC-----HHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHH
Confidence 35667777655443 67888887776666676666677777888888888877665543 44455666665443
No 85
>PRK12539 RNA polymerase sigma factor; Provisional
Probab=21.76 E-value=2e+02 Score=23.33 Aligned_cols=51 Identities=8% Similarity=-0.003 Sum_probs=38.2
Q ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHH
Q psy5989 52 EILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQE 104 (220)
Q Consensus 52 EIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~ 104 (220)
-+.++++.|-.+.+++|-.++..+..+..+..|.+|. ..-+.-.+.+.+..
T Consensus 44 ~~~~~~~~AeDlvQe~~l~l~~~~~~~~~~~~f~~wl--~~i~~n~~~d~~R~ 94 (184)
T PRK12539 44 RIGRGAEEAEDLVQEALMAIHTRRHTYDPEQPLTPWV--YAIARYKLIDHLRR 94 (184)
T ss_pred hccCCcchHHHHHHHHHHHHHHHHhhcCCCCChHHHH--HHHHHHHHHHHHHH
Confidence 4568899999999999999999888887666788887 44444455555443
No 86
>TIGR02959 SigZ RNA polymerase sigma factor, SigZ family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937). One of these is designated as SigZ in B. subtilis (Swiss_Prot: SIGZ_BACSU). Interestingly, this group has a very sporatic distribution, B. subtilis, for instance, being the only sequenced strain of Bacilli with a member. Dechloromonas aromatica RCB appears to have two of these sigma factors. A member appears on a plasmid found in Photobacterium profundum SS9 and Vibrio fischeri ES114 (where a second one is chromosomally encoded).
Probab=21.53 E-value=2e+02 Score=23.16 Aligned_cols=53 Identities=9% Similarity=0.049 Sum_probs=39.0
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHH
Q psy5989 49 FYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQ 103 (220)
Q Consensus 49 F~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq 103 (220)
|.|-++++.+.|-.+++++|-.++..+..+..+..|..|. ..-+.-.+.+.+.
T Consensus 11 ~~~~~~~~~~~AeDlvQe~fl~l~~~~~~~~~~~~f~~wl--~~iarn~~~d~~R 63 (170)
T TIGR02959 11 FIKSRVSDASDVEDLLQEVFIKIHRNLPSLKDGQKIQSWL--YQIARNTIIDFYR 63 (170)
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHHHHHhcCCcccHHHHH--HHHHHHHHHHHHH
Confidence 3456888999999999999999999888887777777776 3444444444443
No 87
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=21.37 E-value=5.3e+02 Score=24.86 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHH
Q psy5989 100 KAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVK 149 (220)
Q Consensus 100 ~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Af 149 (220)
.-|+.|++.=+ ..-.-||-+||.+|+-=.=+|.-+++++.....-+.+.
T Consensus 228 g~y~~AV~~~e-~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 228 GDYQKAVEALE-RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred cchHHHHHHHH-HHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34555555333 23356889999999987788889999998887776654
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=21.33 E-value=8.6e+02 Score=24.61 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH
Q psy5989 14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA 69 (220)
Q Consensus 14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~ 69 (220)
.+.|...+++|.+++...-.+.+|....+..+.+.-+++. ++.+.|.....++..
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~al~ 601 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW-ARLDEAEQCARKGLE 601 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhHH
Confidence 3567777888888876543334443332333344455554 999999888877754
No 89
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=21.28 E-value=1.9e+02 Score=23.04 Aligned_cols=53 Identities=9% Similarity=0.034 Sum_probs=37.9
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHH
Q psy5989 49 FYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQ 103 (220)
Q Consensus 49 F~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq 103 (220)
|.+-++++.+.|-.+.+++|-.+++....+.....|.+|. ..-+.-.+.+.+.
T Consensus 22 ~a~~~~~~~~~AeDivQe~fl~l~~~~~~~~~~~~~~~wl--~~i~~n~~~d~~R 74 (164)
T PRK12547 22 FAVSLSSKHDKAEDLVQDTLMKAWAKQDSFEMGTNLKAWL--FTILRNEFYSQMR 74 (164)
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHHhhhhcCCcccHHHHH--HHHHHHHHHHHHH
Confidence 3456889999999999999999999877776555566666 4444444444444
No 90
>PRK14574 hmsH outer membrane protein; Provisional
Probab=21.07 E-value=6.8e+02 Score=26.35 Aligned_cols=17 Identities=0% Similarity=-0.029 Sum_probs=12.4
Q ss_pred hhcChHHHHHHHHHHHH
Q psy5989 53 ILNSPDKACQLAKQVCA 69 (220)
Q Consensus 53 Il~~~~~A~~lAk~A~~ 69 (220)
..++.++|...++++++
T Consensus 80 ~~G~~~~A~~~~eka~~ 96 (822)
T PRK14574 80 WAGRDQEVIDVYERYQS 96 (822)
T ss_pred HcCCcHHHHHHHHHhcc
Confidence 34778888888877763
No 91
>KOG0550|consensus
Probab=20.53 E-value=3.8e+02 Score=26.56 Aligned_cols=72 Identities=18% Similarity=0.119 Sum_probs=40.4
Q ss_pred cCCCCCccccccccchhHHHHHhh-----------cChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHH
Q psy5989 31 KMQPTHPIRLGLALNFSVFYYEIL-----------NSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQ 99 (220)
Q Consensus 31 ~L~pt~PirLGLaLN~SVF~yEIl-----------~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~ 99 (220)
.|.+++--+| .||-++.||.-- =..+.+|.-+++++--.-.....-..+|. .+ |+--...|.
T Consensus 197 kld~~n~~al--~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~---~f--k~G~y~~A~ 269 (486)
T KOG0550|consen 197 KLDATNAEAL--YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND---AF--KNGNYRKAY 269 (486)
T ss_pred hcccchhHHH--HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh---Hh--hccchhHHH
Confidence 3677776654 445555555421 12334455555555444443333344433 22 566678999
Q ss_pred HHHHHHHHHH
Q psy5989 100 KAYQEAFDIA 109 (220)
Q Consensus 100 ~aYq~A~eiA 109 (220)
++|.+|+.+.
T Consensus 270 E~Yteal~id 279 (486)
T KOG0550|consen 270 ECYTEALNID 279 (486)
T ss_pred HHHHHhhcCC
Confidence 9999999654
No 92
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=20.21 E-value=5.2e+02 Score=21.63 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=9.8
Q ss_pred HHHHHHHhhHHHHHHHHHHhHh
Q psy5989 186 AKLAEQAERYDDMAAAMKAVTE 207 (220)
Q Consensus 186 akl~eq~ery~~m~~~~~~~~~ 207 (220)
|-.+.+-.+|++-+..++++++
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 3333344444444444444443
Done!