RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5989
(220 letters)
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell
regulator protein, cryptospo parvum, structural
genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP:
a.118.7.1
Length = 227
Score = 97.0 bits (241), Expect = 6e-25
Identities = 12/57 (21%), Positives = 22/57 (38%)
Query: 90 CSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
L +EDS+K +Q+AF + + LG N + E + ++
Sbjct: 136 FGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLN 192
Score = 95.1 bits (236), Expect = 2e-24
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 12 AVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAK 65
++DS+K +Q AF + + LG N + E + +
Sbjct: 139 CSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLN 192
Score = 61.9 bits (150), Expect = 6e-12
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYG 213
E+ RA++ E +D M A+K++
Sbjct: 5 ERLLQKYRAQVFEWGGCFDKMFEALKSLIYLSEFEN 40
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein,
secreted, prote binding, signaling protein; HET: SEP;
1.05A {Homo sapiens} PDB: 3iqj_A* 3iqv_A* 3mhr_A*
3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3p1s_A* 3p1r_A* 3p1q_A*
3p1p_A* 1ywt_A* 1yz5_A 2v7d_A* 2o02_A 1qja_A* 1a37_A
1a38_A 1a4o_A* 1ib1_A* ...
Length = 236
Score = 74.5 bits (182), Expect = 2e-16
Identities = 44/126 (34%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 28 SKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMND-----P 82
S+ K R + +L D + + A FY + D
Sbjct: 79 SEEKGPEVREYREKVETELQGVCDTVLGLLDSHL-IKEAGDAESRVFYLKMKGDYYRYLA 137
Query: 83 EFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARAC 142
E + + + ++ AYQEA DI+K +M PT+PIRLGLALNFSVF+YEI NSP A
Sbjct: 138 EVATGDDKKRII-DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAI 196
Query: 143 HLAKQV 148
LAK
Sbjct: 197 SLAKTT 202
Score = 69.5 bits (169), Expect = 1e-14
Identities = 34/67 (50%), Positives = 48/67 (71%)
Query: 1 MSGDGDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKA 60
++ + ++D ++ AYQ+A +ISK +M PT+PIRLGLALNFSVF+YEI NSP++A
Sbjct: 136 LAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEA 195
Query: 61 CQLAKQV 67
LAK
Sbjct: 196 ISLAKTT 202
Score = 61.4 bits (148), Expect = 1e-11
Identities = 23/38 (60%), Positives = 27/38 (71%)
Query: 175 SSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEY 212
S E+ L+Q+AKLAEQAERY+DMAA MK E G E
Sbjct: 4 GSMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEEL 41
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3,
phosphoserine, structural GE consortium, SGC, ywhae;
HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A*
3m50_A* 3m51_A* 3axy_C*
Length = 234
Score = 73.4 bits (179), Expect = 4e-16
Identities = 38/60 (63%), Positives = 44/60 (73%)
Query: 94 VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCI 153
E+S AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC LAK I
Sbjct: 145 AAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 204
Score = 72.6 bits (177), Expect = 7e-16
Identities = 35/55 (63%), Positives = 45/55 (81%)
Query: 13 VVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQV 67
++S AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD+AC+LAK
Sbjct: 145 AAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 199
Score = 56.4 bits (135), Expect = 5e-10
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 175 SSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGI 214
S ++E+LV +AKLAEQAERYD+M +MK V VE +
Sbjct: 1 SMDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTV 40
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics
consortium, MA alpha, phosphoserine, phosphothreonine;
HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A*
2c63_A* 2c74_A* 4dnk_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A*
2btp_A*
Length = 248
Score = 72.9 bits (178), Expect = 9e-16
Identities = 44/81 (54%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
Query: 73 CFYFFLMNDPEFSPLFPCS-----LAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNF 127
FY + D L + VVE S+KAY EA +I+K MQPTHPIRLGLALN+
Sbjct: 121 VFYLKMKGDYYR-YLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNY 179
Query: 128 SVFYYEIINSPARACHLAKQV 148
SVFYYEI N+P +ACHLAK
Sbjct: 180 SVFYYEIQNAPEQACHLAKTA 200
Score = 71.4 bits (174), Expect = 2e-15
Identities = 39/62 (62%), Positives = 47/62 (75%)
Query: 6 DEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAK 65
+ VV+ S+KAY +A EISK MQPTHPIRLGLALN+SVFYYEI N+P++AC LAK
Sbjct: 139 TGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAK 198
Query: 66 QV 67
Sbjct: 199 TA 200
Score = 60.2 bits (145), Expect = 2e-11
Identities = 24/34 (70%), Positives = 29/34 (85%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
++E+LVQ+A+LAEQAERYDDMAAAMK VTE
Sbjct: 3 DREQLVQKARLAEQAERYDDMAAAMKNVTELNEP 36
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3,
struc genomics, structural genomics consortium, SGC,
protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Length = 260
Score = 71.8 bits (175), Expect = 2e-15
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 28 SKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDP----- 82
++ + R + + +IL DK + FYF + D
Sbjct: 102 AEDASKMCGKYRSKVEAELTDICNDILTMLDKHL-IPTATSPDSKVFYFKMKGDYHRYIS 160
Query: 83 EFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARAC 142
EFS + ED+ KAY++A +AK ++PTHPIRLGLALNFSVF+YEI+N P A
Sbjct: 161 EFSTGDSKQ-SSAEDALKAYKDATVVAK-DLEPTHPIRLGLALNFSVFHYEILNEPRAAI 218
Query: 143 HLAKQVKYSCI 153
+AK+ I
Sbjct: 219 DMAKEAFEMAI 229
Score = 67.6 bits (164), Expect = 8e-14
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 13 VVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVC 68
+D+ KAY+ A ++K ++PTHPIRLGLALNFSVF+YEILN P A +AK+
Sbjct: 171 SAEDALKAYKDATVVAK-DLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAF 225
Score = 58.7 bits (141), Expect = 1e-10
Identities = 21/43 (48%), Positives = 24/43 (55%)
Query: 174 SSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGIYS 216
S +E V AKLAEQAERYD+MA MK V E E +
Sbjct: 23 DSVNARESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELT 65
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling
protein, signaling protein-protei complex; HET: SEP;
1.90A {Homo sapiens}
Length = 261
Score = 70.7 bits (172), Expect = 7e-15
Identities = 37/55 (67%), Positives = 43/55 (78%)
Query: 94 VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 148
E+S AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC LAK
Sbjct: 171 AAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 225
Score = 69.9 bits (170), Expect = 1e-14
Identities = 35/55 (63%), Positives = 45/55 (81%)
Query: 13 VVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQV 67
++S AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD+AC+LAK
Sbjct: 171 AAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 225
Score = 59.5 bits (143), Expect = 6e-11
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 172 TMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGI 214
M S ++E+LV +AKLAEQAERYD+M +MK V VE +
Sbjct: 24 AMGSMDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTV 66
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family,
activating drug; HET: TPO; 2.3A {Nicotiana tabacum}
SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Length = 260
Score = 69.5 bits (169), Expect = 2e-14
Identities = 37/55 (67%), Positives = 44/55 (80%)
Query: 94 VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 148
E + AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC+LAKQ
Sbjct: 150 AAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQA 204
Score = 68.8 bits (167), Expect = 3e-14
Identities = 35/67 (52%), Positives = 47/67 (70%)
Query: 1 MSGDGDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKA 60
++ + + + AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD+A
Sbjct: 138 LAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRA 197
Query: 61 CQLAKQV 67
C LAKQ
Sbjct: 198 CNLAKQA 204
Score = 56.4 bits (135), Expect = 7e-10
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 174 SSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETG 209
+ +EE V AKLAEQAERY++M M+ V+ +
Sbjct: 3 VAPTAREENVYMAKLAEQAERYEEMVEFMEKVSNSL 38
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom
structural genomics consortium, SGC; HET: SEP; 2.08A
{Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Length = 268
Score = 64.9 bits (157), Expect = 9e-13
Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 94 VVEDSQKAYQEAFDIAKSKMQ--PTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 148
++ + + Y++A +S ++ P+ P+ L LN+++ Y+++ +P A A +
Sbjct: 167 CIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRA 223
Score = 64.9 bits (157), Expect = 9e-13
Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 13 VVDDSQKAYQQAFEISKSKMQ--PTHPIRLGLALNFSVFYYEILNSPDKACQLAKQV 67
+ + + Y+ A + +S ++ P+ P+ L LN+++ Y++L +P+ A + A +
Sbjct: 167 CIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRA 223
Score = 57.2 bits (137), Expect = 4e-10
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 170 FHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTET 208
+ + E RAKLA+ Y D+ + ++
Sbjct: 20 QGITEKNMKLSEGAYRAKLADMVGNYKDVIKVLTESSDF 58
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.004
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 178 EKEELVQRAKLAEQAERY-DDMAAAMKAVTETGVE 211
EK+ L KL + Y DD A A+ A+ T +E
Sbjct: 18 EKQAL---KKLQASLKLYADDSAPAL-AIKAT-ME 47
Score = 29.1 bits (64), Expect = 0.64
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 13/39 (33%)
Query: 91 SLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSV 129
+L ++ S K Y A D A P LA+ ++
Sbjct: 21 ALKKLQASLKLY--ADDSA-----P------ALAIKATM 46
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 34.6 bits (79), Expect = 0.021
Identities = 19/188 (10%), Positives = 48/188 (25%), Gaps = 13/188 (6%)
Query: 21 YQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMN 80
++AF++ + P+ L + + D+A A+
Sbjct: 116 QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA-WARLDEAEASARSGIEVL------SSY 168
Query: 81 DPEFSPLFPCSLAVVEDSQKAYQEAFDI-----AKSKMQPTHPIRLGLALNFSVFYYEII 135
P+ L ++ A H + A V Y+++
Sbjct: 169 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 228
Query: 136 NSPARACHLAKQVKYSCIGASRDTKRSVCLLCEIFHTMSSSGEKEELVQRA-KLAEQAER 194
A A + + + + + + E +++ + A
Sbjct: 229 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL 288
Query: 195 YDDMAAAM 202
D+ +
Sbjct: 289 MSDLNRNL 296
Score = 26.5 bits (58), Expect = 7.1
Identities = 11/106 (10%), Positives = 28/106 (26%), Gaps = 3/106 (2%)
Query: 102 YQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGAS-RDTK 160
++AF + + P+ L + + A A+ +
Sbjct: 116 QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA-WARLDEAEASARSGIEVLSSYQPQQQL 174
Query: 161 RSVCLLCEIFHTMSSSGEKEELVQRA-KLAEQAERYDDMAAAMKAV 205
+ + +L + + R L + + D + V
Sbjct: 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 220
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.23
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 174 SSSGEKEELVQRAK--LAEQAERYDDMAAAMKA 204
+S ++E ++AK L E +R + K
Sbjct: 104 ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.47
Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 30/121 (24%)
Query: 4 DGDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRL------GLALNFSVF-------- 49
+ + K Y A ++K L G A ++F
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 50 YYEILNSPDKACQLAKQVCAHYFCFY--FFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFD 107
Y+E L + + Y + S L + D++K + + +
Sbjct: 169 YFEEL----------RDLYQTYHVLVGDLIKFSAETLSEL----IRTTLDAEKVFTQGLN 214
Query: 108 I 108
I
Sbjct: 215 I 215
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.81
Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 58/185 (31%)
Query: 50 YYEILNSPDKACQLAKQVCAHY-----FC------------FYFFL------MNDPEFSP 86
Y E+ + L + + HY F FY + + PE
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 87 LFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
LF + + F + K+ A N S + L
Sbjct: 492 LFR----------MVFLD-FRFLEQKI-----RHDSTAWNASGSILNTLQQ------LKF 529
Query: 147 QVKYSCIGASRDTKRSVCLLCEIFHTMSSSGEK------EELVQRAKLAEQAERYDDMAA 200
Y C + + L+ I + E +L++ A +AE +++
Sbjct: 530 YKPYICDNDPKYER----LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE--- 582
Query: 201 AMKAV 205
A K V
Sbjct: 583 AHKQV 587
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 29.4 bits (65), Expect = 0.96
Identities = 26/132 (19%), Positives = 34/132 (25%), Gaps = 5/132 (3%)
Query: 49 FYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDI 108
F IL +ND + L D + Q AFD+
Sbjct: 213 FRSSILRKSFDFLMNMPNCDYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFDL 272
Query: 109 AKSKMQ-PTHPIRLGLALNFSVFYYEIINSPARACHLAKQV----KYSCIGASRDTKRSV 163
S Q + L I S C K IG +K S+
Sbjct: 273 VSSASQQLLEILVTELTAQGYDPALLNILSGLPTCDYYNTFLLNNKNIDIGLLNKSKSSL 332
Query: 164 CLLCEIFHTMSS 175
+FHT S
Sbjct: 333 DGKFSLFHTAVS 344
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 28.1 bits (62), Expect = 2.1
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 2/103 (1%)
Query: 49 FYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVV-EDSQKAYQEAFD 107
F Y++ + P K C+L + A ++ + + S P L V Y
Sbjct: 56 FSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIH 115
Query: 108 IAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY 150
I + P+ L L + + P + ++Y
Sbjct: 116 IN-EVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRY 157
>1ux8_A YJBI protein; oxygen storage/transport, truncated hemoglobin,
oxygen transport; HET: HEM; 2.15A {Bacillus subtilis}
SCOP: a.1.1.1
Length = 132
Score = 26.5 bits (58), Expect = 4.2
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 73 CFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAF 106
FY + + P P+FP L QK + +
Sbjct: 23 TFYERVASHPLLKPIFPSDLTETARKQKQFLTQY 56
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Pyrococcus furiosus}
Length = 142
Score = 26.1 bits (58), Expect = 6.7
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 9/49 (18%)
Query: 175 SSGEK----EELVQRAKLAEQAERYDDMAAA-----MKAVTETGVEYGI 214
+ L ++ + ++E +D + K V E EYG+
Sbjct: 84 FLANMKNVSQRLKEKVRELLESEDWDLVFMVGPVGDQKQVFEVVKEYGV 132
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus;
hypothetical protein, oxygen transport, transport,
oxygen storage; HET: HEM; 1.5A {Geobacillus
stearothermophilus}
Length = 128
Score = 25.7 bits (56), Expect = 8.9
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 74 FYFFLMNDPEFSPLFPCSLAVVEDSQKAY 102
FY + P+ P+FP L QK +
Sbjct: 23 FYRRVAAHPDLRPIFPDDLTETAHKQKQF 51
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding
proteins, PSI, protein structure initiative; HET: CSW
CME; 1.80A {Geobacillus stearothermophilus} SCOP:
d.129.7.1
Length = 130
Score = 25.4 bits (55), Expect = 9.4
Identities = 5/35 (14%), Positives = 9/35 (25%)
Query: 75 YFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIA 109
L + PC L V +++
Sbjct: 66 ARVLNENLLVGYFLPCKLVVYQENGTTKIGMPKPT 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.394
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,281,332
Number of extensions: 181568
Number of successful extensions: 482
Number of sequences better than 10.0: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 39
Length of query: 220
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 130
Effective length of database: 4,188,903
Effective search space: 544557390
Effective search space used: 544557390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.5 bits)