RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5989
(220 letters)
>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein
cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}
Length = 220
Score = 96.9 bits (241), Expect = 2e-25
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 90 CSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVK 149
L +EDS+K +Q+AF + + LG N + E + ++ +
Sbjct: 134 FGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLG 193
Query: 150 YSCIGA-------SRDTKRSVCLL 166
R + +V L
Sbjct: 194 KILELQIKEQENMDRKAQITVYLQ 217
Score = 96.5 bits (240), Expect = 3e-25
Identities = 10/59 (16%), Positives = 20/59 (33%)
Query: 13 VVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHY 71
++DS+K +Q AF + + LG N + E + + +
Sbjct: 138 SLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 196
Score = 54.1 bits (130), Expect = 1e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETG 209
E+ RA++ E +D M A+K++
Sbjct: 3 ERLLQKYRAQVFEWGGCFDKMFEALKSLIYLS 34
>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 236
Score = 86.8 bits (215), Expect = 1e-21
Identities = 35/56 (62%), Positives = 44/56 (78%)
Query: 13 VVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVC 68
+ + AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQ
Sbjct: 146 AAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 201
Score = 84.1 bits (208), Expect = 1e-20
Identities = 37/54 (68%), Positives = 44/54 (81%)
Query: 94 VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 147
E + AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC+LAKQ
Sbjct: 146 AAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQ 199
Score = 58.7 bits (142), Expect = 3e-11
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTET 208
+EE V AKLAEQAERY++M M+ V+ +
Sbjct: 3 AREENVYMAKLAEQAERYEEMVEFMEKVSNS 33
>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId:
9913]}
Length = 230
Score = 86.8 bits (215), Expect = 1e-21
Identities = 45/54 (83%), Positives = 50/54 (92%)
Query: 13 VVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ 66
+VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LAK
Sbjct: 141 IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKT 194
Score = 86.1 bits (213), Expect = 3e-21
Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 5/133 (3%)
Query: 19 KAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFL 78
+ +Q E ++ K Q R + ++L+ +K + A FY +
Sbjct: 63 SSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFL-IPNASQAESKVFYLKM 121
Query: 79 MNDPEF--SPLFPCS--LAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEI 134
D + + +V+ SQ+AYQEAF+I+K +MQPTHPIRLGLALNFSVFYYEI
Sbjct: 122 KGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEI 181
Query: 135 INSPARACHLAKQ 147
+NSP +AC LAK
Sbjct: 182 LNSPEKACSLAKT 194
Score = 62.6 bits (152), Expect = 1e-12
Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
+K ELVQ+AKLAEQAERYDDMAA MK+VTE G E
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAE 35
>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980
{Cryptosporidium parvum [TaxId: 5807]}
Length = 223
Score = 81.1 bits (200), Expect = 1e-19
Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 4 DGDEPQEGAVVDDSQKAYQQAFEISKSKMQ--PTHPIRLGLALNFSVFYYEILNSPDKAC 61
+E + + + + Y+ A + +S ++ P+ P+ L LN+++ Y++L +P+ A
Sbjct: 115 KDEEKNQ--CIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAM 172
Query: 62 QLAKQ 66
+ A +
Sbjct: 173 KFANR 177
Score = 81.1 bits (200), Expect = 2e-19
Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 94 VVEDSQKAYQEAFDIAKSKMQ--PTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 147
++ + + Y++A +S ++ P+ P+ L LN+++ Y+++ +P A A +
Sbjct: 122 CIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANR 177
>d1ux8a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Bacillus
subtilis [TaxId: 1423]}
Length = 119
Score = 25.3 bits (55), Expect = 4.3
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 74 FYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAF 106
FY + + P P+FP L QK + +
Sbjct: 19 FYERVASHPLLKPIFPSDLTETARKQKQFLTQY 51
>d1w32a_ c.1.8.3 (A:) Xylanase A, catalytic core {Pseudomonas
fluorescens [TaxId: 294]}
Length = 346
Score = 25.6 bits (55), Expect = 5.1
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGI 214
+ V A L Q RY ++ A V G GI
Sbjct: 266 RNDCAVSCAGLDRQKARYKEIVQAYLEVVPPGRRGGI 302
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 255
Score = 25.0 bits (54), Expect = 6.5
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 12/90 (13%)
Query: 1 MSGDGDEPQEGAVVDDSQKAYQQAFE--ISKSKMQPTHPIRLGLALNFSVFYYEILNSPD 58
+S D Q+ A+++ Q + I P + +++
Sbjct: 171 VSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYA----------KMIQKLA 220
Query: 59 KACQLAKQVCAHYFCFYFFLMNDPEFSPLF 88
L ++ Y C F + +PL
Sbjct: 221 DLRSLNEEHSKQYRCLSFQPECSMKLTPLV 250
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.133 0.394
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 789,054
Number of extensions: 34101
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 17
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)