BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy599
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 73/125 (58%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
G PL AA GHL +V+ L+E GA VN+K + TPL A +GH VVK L+E GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
+++G T L +A GH +VK LL AD+N K G T LH A G +E++KLL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 195 LSHGA 199
L GA
Sbjct: 121 LEAGA 125
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 75/133 (56%), Gaps = 9/133 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A RNGH E+V+ L+ E ADV + + G PL AA GHL +V+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-EAGADV--------NAKDKNGRTPLHLAARNGHLEVVK 52
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+E GA VN+K + TPL A +GH VVK L+E GAD +++G T L +A G
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112
Query: 154 HYRIVKYLLSLNA 166
H +VK LL A
Sbjct: 113 HLEVVKLLLEAGA 125
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
TPL A +GH VVK L+E GAD +++G T L +A GH +VK LL AD+N
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
K G T LH A G +E++KLLL GA ++ D G TPL AA GH +V+ L+
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 141 HGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGAR 200
+G T L +A GH +VK LL AD+N K G T LH A G +E++KLLL GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 201 MDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
++ D G TPL AA GH +V+ L+
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 1/145 (0%)
Query: 83 AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
AA G+ V+ L+E+GA VN+ TPL A +GH VVK L+ GAD + G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
T L +A GH +VK LLS AD N K S G T LH AE G E++KLLLS GA +
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 203 V-DSYGMTPLLAAAVVGHQHIVEYL 226
DS G TPL A G++ +V+ L
Sbjct: 131 TSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
LI A NG+K+ V+ L+ E ADV + + +G PL AA GH +V+ L+
Sbjct: 8 LIEAAENGNKDRVKDLL-ENGADVNASDS--------DGKTPLHLAAENGHKEVVKLLLS 58
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
GA N+K TPL A +GH VVK L+ GAD + G T L +A GH +
Sbjct: 59 QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEV 118
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
VK LLS AD N S G T L E G+ E++KLL G ++
Sbjct: 119 VKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG 175
A +G+ VK L+E+GAD S+ G T L +A GH +VK LLS AD N K S G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 176 NTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
T LH AE G E++KLLLS GA + DS G TPL AA GH+ +V+ L+
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL 123
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A NGHKE+V+ L+ + AD + + +G PL AA GH +V+
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQG-ADP--------NAKDSDGKTPLHLAAENGHKEVVK 87
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ GA N+K TPL A +GH VVK L+ GAD S+ G T L +A G
Sbjct: 88 LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHG 147
Query: 154 HYRIVKYL 161
+ +VK L
Sbjct: 148 NEEVVKLL 155
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
L+ A G+ VK LL AD+N S G T LH AE G E++KLLLS GA + D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
S G TPL AA GH+ +V+ L+
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLL 90
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A NGHKE+V+ L+ + AD + + +G PL AA GH +V+
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQG-ADP--------NAKDSDGKTPLHLAAENGHKEVVK 120
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFE 136
L+ GA N+ TPL A G+ VVK L + G E
Sbjct: 121 LLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA G+ V+ L+E+GA VN+ TPL A +GH VVK L+ GAD +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
G T L A GH +VK L+S AD+N K S G T LH AE G E++KLL+S GA
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
++ DS G TPL A G++ +V+ L
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 83/162 (51%), Gaps = 9/162 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
LI A NG+K+ V+ L+ E ADV + + +G PL AA GH +V+ L+
Sbjct: 8 LIEAAENGNKDRVKDLI-ENGADVNASDS--------DGRTPLHHAAENGHKEVVKLLIS 58
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
GA VN+K TPL A +GH VVK L+ GAD + G T L A GH +
Sbjct: 59 KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 118
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
VK L+S AD+N S G T L E G+ E++KLL G
Sbjct: 119 VKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG 175
A +G+ VK L+E+GAD S+ G T L A GH +VK L+S AD+N K S G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 176 NTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
T LH AE G E++KLL+S GA ++ DS G TPL AA GH+ +V+ LI
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL A NGHKE+V+ L+ + ADV + +G PL AA GH +V+
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKG-ADVNAKDS--------DGRTPLHHAAENGHKEVVK 87
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ GA VN+K TPL A +GH VVK L+ GAD S+ G T L +A G
Sbjct: 88 LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHG 147
Query: 154 HYRIVKYL 161
+ +VK L
Sbjct: 148 NEEVVKLL 155
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
L+ A G+ VK L+ AD+N S G T LH AE G E++KLL+S GA ++ D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
S G TPL AA GH+ +V+ LI
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLI 90
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL A NGHKE+V+ L+ + ADV + +G PL AA GH +V+
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKG-ADVNAKDS--------DGRTPLHHAAENGHKEVVK 120
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFE 136
L+ GA VN+ TPL A G+ VVK L + G E
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 83 AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
AA AG V+ L+ +GA VN+ T +TPL A + GH +V+ L++HGAD + S+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
+T L +A Y GH IV+ LL AD+N S G T LH A+ G +EI+++LL HGA ++
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 203 V-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
D +G T + G++ + E L LN
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A +GH EIVE L+K ADV D V G PL AA GHL IV+
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHG-ADV--------DASDVFGYTPLHLAAYWGHLEIVE 97
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+++GA VN+ TPL A G+ +V+ L++HGAD ++ G T I+ G
Sbjct: 98 VLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157
Query: 154 HYRIVKYLLSLN 165
+ + + L LN
Sbjct: 158 NEDLAEILQKLN 169
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV G PL AA +GHL IV+ L++
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNAADNT--------GTTPLHLAAYSGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
HGA V++ TPL A + GH +V+ L+++GAD + G T L +A G+ I
Sbjct: 69 HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
L+ A G V+ L++ AD+N + G T LH A +G +EI+++LL HGA +D D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
+G TPL AA GH IVE L+
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLL 100
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN+K + TPL A +GH +V+ L++ GAD +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+ G+T L +A +GH IV+ LL AD+N K G T LH A G +EI+++LL GA
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
++ D +G TP A GH+ I E L
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 9/128 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A R GH EIVE L+K ADV + + +G PL AA GHL IV+
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLK-AGADV--------NAKDKDGYTPLHLAAREGHLEIVE 85
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L++ GA VN+K + TPL A +GH +V+ L++ GAD ++ G T +A +G
Sbjct: 86 VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREG 145
Query: 154 HYRIVKYL 161
H I + L
Sbjct: 146 HEDIAEVL 153
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV + + +G PL AA GHL IV+ L++
Sbjct: 6 LLEAARAGQDDEVRILMANG-ADV--------NAKDKDGYTPLHLAAREGHLEIVEVLLK 56
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
GA VN+K + TPL A +GH +V+ L++ GAD ++ G+T L +A +GH I
Sbjct: 57 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI 116
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G T G +I ++L
Sbjct: 117 VEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 120 GHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTAL 179
G V+ L+ +GAD ++ G+T L +A +GH IV+ LL AD+N K G T L
Sbjct: 13 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 72
Query: 180 HDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
H A G +EI+++LL GA ++ D G TPL AA GH IVE L+
Sbjct: 73 HLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
L+ A G V+ L++ AD+N K G T LH A G +EI+++LL GA ++ D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
G TPL AA GH IVE L+
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLL 88
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 86/165 (52%), Gaps = 9/165 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
LI A NG+K+ V+ L+ E ADV + + +G PL AA GH IV+ L+
Sbjct: 8 LIEAAENGNKDRVKDLI-ENGADVNASDS--------DGRTPLHYAAKEGHKEIVKLLIS 58
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
GA VN+K TPL A +GH +VK L+ GAD + G T L A +GH I
Sbjct: 59 KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEI 118
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
VK L+S AD+N S G T L E G+ EI+KLL G ++
Sbjct: 119 VKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG 175
A +G+ VK L+E+GAD S+ G T L A +GH IVK L+S AD+N K S G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 176 NTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
T LH A+ G EI+KLL+S GA ++ DS G TPL AA GH+ IV+ LI
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 123
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL A + GHKEIV+ L+ + ADV + + +G PL AA GH IV+
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLISKG-ADV--------NAKDSDGRTPLHYAAKEGHKEIVK 87
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ GA VN+K TPL A +GH +VK L+ GAD S+ G T L +A G
Sbjct: 88 LLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHG 147
Query: 154 HYRIVKYL 161
+ IVK L
Sbjct: 148 NEEIVKLL 155
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
L+ A G+ VK L+ AD+N S G T LH A+ G EI+KLL+S GA ++ D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
S G TPL AA GH+ IV+ LI
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLI 90
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL A + GHKEIV+ L+ + ADV + + +G PL AA GH IV+
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKG-ADV--------NAKDSDGRTPLHYAAKEGHKEIVK 120
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFE 136
L+ GA VN+ TPL A G+ +VK L + G E
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 79/145 (54%), Gaps = 1/145 (0%)
Query: 83 AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
AA G+ V+ L+E+GA N+ TPL A +GH +VK L+ GAD + G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
T L A GH IVK LLS AD N K S G T LH AE G EI+KLLLS GA +
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 203 V-DSYGMTPLLAAAVVGHQHIVEYL 226
DS G TPL A G++ IV+ L
Sbjct: 131 TSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 80/162 (49%), Gaps = 9/162 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
LI A NG+K+ V+ L+ E AD + + +G PL AA GH IV+ L+
Sbjct: 8 LIEAAENGNKDRVKDLL-ENGADPNASDS--------DGRTPLHYAAENGHKEIVKLLLS 58
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
GA N+K TPL A +GH +VK L+ GAD + G T L A GH I
Sbjct: 59 KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEI 118
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
VK LLS AD N S G T L E G+ EI+KLL G
Sbjct: 119 VKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG 175
A +G+ VK L+E+GAD S+ G T L A GH IVK LLS AD N K S G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 176 NTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
T LH AE G EI+KLLLS GA + DS G TPL AA GH+ IV+ L+
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 123
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL A NGHKEIV+ L+ + + + +G PL AA GH IV+
Sbjct: 37 GRTPLHYAAENGHKEIVKLLL---------SKGADPNAKDSDGRTPLHYAAENGHKEIVK 87
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ GA N+K TPL A +GH +VK L+ GAD S+ G T L +A G
Sbjct: 88 LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHG 147
Query: 154 HYRIVKYL 161
+ IVK L
Sbjct: 148 NEEIVKLL 155
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
L+ A G+ VK LL AD N S G T LH AE G EI+KLLLS GA + D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
S G TPL AA GH+ IV+ L+
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLL 90
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL A NGHKEIV+ L+ + + + +G PL AA GH IV+
Sbjct: 70 GRTPLHYAAENGHKEIVKLLL---------SKGADPNAKDSDGRTPLHYAAENGHKEIVK 120
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFE 136
L+ GA N+ TPL A G+ +VK L + G E
Sbjct: 121 LLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 10/196 (5%)
Query: 32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPI 91
+ G TPL +A + E+ L++ + + E+V+G PL AA GH +
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGGS---------ANAESVQGVTPLHLAAQEGHAEM 260
Query: 92 VQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACY 151
V L+ A N ++ TPL +GH V L++HG + + R G+T L +A +
Sbjct: 261 VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASH 320
Query: 152 KGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTP 210
G+ ++VK+LL AD+N K+ G + LH A+ G +I+ LLL +GA + V S G TP
Sbjct: 321 YGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP 380
Query: 211 LLAAAVVGHQHIVEYL 226
L A +G+ + + L
Sbjct: 381 LAIAKRLGYISVTDVL 396
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 98/193 (50%), Gaps = 10/193 (5%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
TPL +A GH IV+ L++ + + V+ PL AA AGH + ++L
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASP---------NVSNVKVETPLHMAARAGHTEVAKYL 66
Query: 96 VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
+++ AKVN+K + + TPL A GH +VK L+E+ A+ ++ GHT L IA +GH
Sbjct: 67 LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 126
Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLLAA 214
V LL A + KG T LH A+ G + + +LLL A + G+TPL A
Sbjct: 127 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA 186
Query: 215 AVVGHQHIVEYLI 227
+ IV+ L+
Sbjct: 187 VHHNNLDIVKLLL 199
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 88/181 (48%), Gaps = 10/181 (5%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
TPL MA R GH E+ +YL++ KA V A D +T PL CAA GH +V+ L
Sbjct: 49 TPLHMAARAGHTEVAKYLLQN-KAKVN---AKAKDDQT-----PLHCAARIGHTNMVKLL 99
Query: 96 VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
+E+ A N T TPL A +GH V L+E A + G T L +A G
Sbjct: 100 LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV 159
Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSY-GMTPLLAA 214
R+ + LL +A N G T LH +++I+KLLL G ++ G TPL A
Sbjct: 160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219
Query: 215 A 215
A
Sbjct: 220 A 220
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 94/195 (48%), Gaps = 10/195 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A R GH E V L+++ E + A M T +G PL AA G + + +
Sbjct: 113 GHTPLHIAAREGHVETVLALLEK-----EASQACM----TKKGFTPLHVAAKYGKVRVAE 163
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+E A N+ + TPL A + +VK L+ G +G+T L IA +
Sbjct: 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 223
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
+ + LL N +S +G T LH A+ G E++ LLLS A ++ + G+TPL
Sbjct: 224 QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH 283
Query: 213 AAAVVGHQHIVEYLI 227
A GH + + LI
Sbjct: 284 LVAQEGHVPVADVLI 298
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 10/195 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A + G + E L+ E A G G PL A +L IV+
Sbjct: 146 GFTPLHVAAKYGKVRVAELLL-ERDAHPNAAGK--------NGLTPLHVAVHHNNLDIVK 196
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ G +S TPL A V + L+++G + G T L +A +G
Sbjct: 197 LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG 256
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS-YGMTPLL 212
H +V LLS A+ N + G T LH A+ G + + +L+ HG +D + G TPL
Sbjct: 257 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH 316
Query: 213 AAAVVGHQHIVEYLI 227
A+ G+ +V++L+
Sbjct: 317 VASHYGNIKLVKFLL 331
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 10/195 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A + + +IV+ L+ + G PL AA + + +
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSP---------HSPAWNGYTPLHIAAKQNQVEVAR 229
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+++G N+++ TPL A +GH +V L+ A+ + N+ G T L + +G
Sbjct: 230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG 289
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS-YGMTPLL 212
H + L+ ++ + G T LH + G+I+++K LL H A ++ + G +PL
Sbjct: 290 HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH 349
Query: 213 AAAVVGHQHIVEYLI 227
AA GH IV L+
Sbjct: 350 QAAQQGHTDIVTLLL 364
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 144 TCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
T L +A + GH IVK LL A N + K T LH A AG E+ K LL + A+++
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 204 DSYG-MTPLLAAAVVGHQHIVEYLIGLN 230
+ TPL AA +GH ++V+ L+ N
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENN 103
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN+K + TPL A +GH +V+ L++ GAD +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+ G+T L +A +GH IV+ LL AD+N K G T LH A G +EI+++LL GA
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
++ D +G TP A G++ I E L
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV + + +G PL AA GHL IV+ L++
Sbjct: 6 LLEAARAGQDDEVRILMANG-ADV--------NAKDKDGYTPLHLAAREGHLEIVEVLLK 56
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
GA VN+K + TPL A +GH +V+ L++ GAD ++ G+T L +A +GH I
Sbjct: 57 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI 116
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G T + G+ +I ++L
Sbjct: 117 VEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 70/128 (54%), Gaps = 9/128 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A R GH EIVE L+K ADV + + +G PL AA GHL IV+
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLK-AGADV--------NAKDKDGYTPLHLAAREGHLEIVE 85
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L++ GA VN+K + TPL A +GH +V+ L++ GAD ++ G T +A G
Sbjct: 86 VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNG 145
Query: 154 HYRIVKYL 161
+ I + L
Sbjct: 146 NEDIAEVL 153
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 120 GHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTAL 179
G V+ L+ +GAD ++ G+T L +A +GH IV+ LL AD+N K G T L
Sbjct: 13 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 72
Query: 180 HDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
H A G +EI+++LL GA ++ D G TPL AA GH IVE L+
Sbjct: 73 HLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
L+ A G V+ L++ AD+N K G T LH A G +EI+++LL GA ++ D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
G TPL AA GH IVE L+
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLL 88
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN++ + TPL A GH +V+ L++HGAD ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+ G T L +A GH IV+ LL AD+N + G T LH A+AG +EI+++LL +GA
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
++ D +G T + G++ + E L LN
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV + E G PL AA GHL IV+ L++
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADV--------NAEDDSGKTPLHLAAIKGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
HGA VN+ + TPL A GH +V+ L+++GAD ++ +G T L +A GH I
Sbjct: 69 HGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 68/132 (51%), Gaps = 9/132 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A GH EIVE L+K ADV + G PL AA GHL IV+
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHG-ADVNAADKM--------GDTPLHLAALYGHLEIVE 97
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+++GA VN+ TPL A GH +V+ L+++GAD ++ G T I+ G
Sbjct: 98 VLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
Query: 154 HYRIVKYLLSLN 165
+ + + L LN
Sbjct: 158 NEDLAEILQKLN 169
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN+K + TPL A +GH +V+ L++ GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+ G+T L +A +GH IV+ LL AD+N K G T LH A G +EI+++LL GA
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
++ D +G T + G++ + E L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV + + +G PL AA GHL IV+ L++
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADV--------NAKDKDGYTPLHLAAREGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
GA VN+K + TPL A +GH +V+ L++ GAD ++ G+T L +A +GH I
Sbjct: 69 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 129 VEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 9/128 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A R GH EIVE L+K ADV + + +G PL AA GHL IV+
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLK-AGADV--------NAKDKDGYTPLHLAAREGHLEIVE 97
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L++ GA VN+K + TPL A +GH +V+ L++ GAD ++ G T I+ G
Sbjct: 98 VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNG 157
Query: 154 HYRIVKYL 161
+ + + L
Sbjct: 158 NEDLAEIL 165
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 120 GHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTAL 179
G V+ L+ +GAD ++ G+T L +A +GH IV+ LL AD+N K G T L
Sbjct: 25 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 84
Query: 180 HDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
H A G +EI+++LL GA ++ D G TPL AA GH IVE L+
Sbjct: 85 HLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
L+ A G V+ L++ AD+N K G T LH A G +EI+++LL GA ++ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
G TPL AA GH IVE L+
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLL 100
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 1/149 (0%)
Query: 83 AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
AA AG V+ L+ +GA VN+ STPL A + GH +V+ L++HGAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
T L +A GH IV+ LL AD+N + + G T LH A+ G +EI+++LL HGA ++
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 203 V-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
D +G T + G++ + E L LN
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ GA + H+ +G+ PL AA GH IV+ L++
Sbjct: 18 LLEAARAGQDDEVRILMA--------NGADVNAHDD-QGSTPLHLAAWIGHPEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
HGA VN++ TPL A +GH +V+ L+++GAD + +G T L +A +GH I
Sbjct: 69 HGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G+TPL +A GH EIVE L+K ADV +G PL AA GHL IV+
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHG-ADVNA--------RDTDGWTPLHLAADNGHLEIVE 97
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+++GA VN++ TPL A GH +V+ L++HGAD ++ G T I+ G
Sbjct: 98 VLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157
Query: 154 HYRIVKYLLSLN 165
+ + + L LN
Sbjct: 158 NEDLAEILQKLN 169
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
L+ A G V+ L++ AD+N +G+T LH A G EI+++LL HGA ++ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
+ G TPL AA GH IVE L+
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLL 100
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 1/149 (0%)
Query: 83 AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
AA AG V+ L+ +GA VN+ TPL +GH +++ L+++ AD S++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
T L +A Y+GH IV+ LL AD+N +G T LH AE G +EI+++LL +GA ++
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 203 V-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
D +G T + G++ + E L LN
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 71/139 (51%), Gaps = 9/139 (6%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA 86
V + G TPL + NGH EI+E L+K ADV + G PL AA
Sbjct: 40 VNANDWFGITPLHLVVNNGHLEIIEVLLKYA-ADVNASDK--------SGWTPLHLAAYR 90
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
GHL IV+ L+++GA VN+ TPL A DGH +V+ L+++GAD ++ G T
Sbjct: 91 GHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 147 MIACYKGHYRIVKYLLSLN 165
I+ G+ + + L LN
Sbjct: 151 DISIDNGNEDLAEILQKLN 169
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV G PL GHL I++ L++
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNANDWF--------GITPLHLVVNNGHLEIIEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
+ A VN+ ++ TPL A + GH +V+ L+++GAD + G+T L +A GH I
Sbjct: 69 YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
L+ A G V+ L++ AD+N G T LH G +EI+++LL + A ++ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
G TPL AA GH IVE L+
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLL 100
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 82/148 (55%), Gaps = 1/148 (0%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AAAAG V+ L+ +GA VN+ TPL A +G +V+ L+++GAD S+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
G T L +A Y GH IV+ LL AD+N G T LH A +G +EI+++LL HGA
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
++ D+ G+T + G + + E L
Sbjct: 130 DVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 66/119 (55%)
Query: 76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
G PL AAA G L IV+ L+++GA VN+ TPL A +DGH +V+ L++HGAD
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV 98
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
+R G T L +A G IV+ LL AD+N + + G TA G ++ ++L
Sbjct: 99 NAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A NG EIVE L+K ADV + + G PL AA GHL IV+
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKNG-ADVNASDSA--------GITPLHLAAYDGHLEIVE 89
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L++HGA VN+ R TPL A G +V+ L++HGAD + G T I+ +G
Sbjct: 90 VLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQG 149
Query: 154 HYRIVKYL 161
+ + L
Sbjct: 150 QEDLAEIL 157
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS 172
L A G V+ L+ +GAD ++ +G T L +A G IV+ LL AD+N
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 173 SKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
S G T LH A G +EI+++LL HGA ++ D G TPL AA+ G IVE L+
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLL 125
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 1/131 (0%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN+ T TPL A GH +V+ L++HGAD + ++
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+G T L +A GH IV+ LL AD+N G+T LH A+ G +EI+++LL +GA
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 200 RMDV-DSYGMT 209
++ D +G T
Sbjct: 138 DVNAQDKFGKT 148
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A +GH EIVE L+K ADV D V G PL AA GHL IV+
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHG-ADV--------DAADVYGFTPLHLAAMTGHLEIVE 97
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+++GA VN+ T STPL A +GH +V+ L+++GAD ++ G T I+ G
Sbjct: 98 VLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
Query: 154 HYRIVK 159
+ + K
Sbjct: 158 NEDLAK 163
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV G PL AA +GHL IV+ L++
Sbjct: 18 LLEAARAGQDDEVRILIANG-ADVNAVDNT--------GLTPLHLAAVSGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
HGA V++ TPL A GH +V+ L+++GAD + G T L +A +GH I
Sbjct: 69 HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
V+ LL AD+N + G TA + G+ ++ K
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
V+ L+ +GAD + G T L +A GH IV+ LL AD++ G T LH A
Sbjct: 30 VRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAM 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
G +EI+++LL +GA ++ D G TPL AA GH IVE L+
Sbjct: 90 TGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VD 204
L+ A G V+ L++ AD+N + G T LH A +G +EI+++LL HGA +D D
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
YG TPL AA+ GH IVE L+
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLL 100
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADV---EETGAVMFD 70
V F G+TPL +A GH EIVE L+K ADV ++ G FD
Sbjct: 106 VNAFDMTGSTPLHLAADEGHLEIVEVLLK-YGADVNAQDKFGKTAFD 151
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 86/152 (56%), Gaps = 1/152 (0%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN++ + TPL A F+GH +V+ L+++GAD +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
G T L +A GH IV+ LL AD+N +G+T LH A G +EI+++LL +GA
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
++ D +G T + G++ + E L LN
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV + E G PL AA GHL IV+ L++
Sbjct: 18 LLEAARAGRDDEVRILMANG-ADV--------NAEDASGWTPLHLAAFNGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
+GA VN+ TPLR A GH +V+ L+++GAD ++ GHT L +A GH I
Sbjct: 69 NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 129 VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A NGH EIVE L+K ADV DH G PL AA GHL IV+
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNG-ADVNAV-----DHA---GMTPLRLAALFGHLEIVE 97
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+++GA VN+ TPL A GH +V+ L+++GAD ++ G T I+ G
Sbjct: 98 VLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157
Query: 154 HYRIVKYLLSLN 165
+ + + L LN
Sbjct: 158 NEDLAEILQKLN 169
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV T + G PL AA GHL IV+ L++
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNATDWL--------GHTPLHLAAKTGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
+GA VN+ +TPL A +GH +V+ L++HGAD + G T L +A Y GH I
Sbjct: 69 YGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA 86
V + G TPL +A + GH EIVE L+K ADV +D+ GA PL AA
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLK-YGADVN-----AWDNY---GATPLHLAADN 90
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
GHL IV+ L++HGA VN+K TPL A +DGH +V+ L+++GAD ++ G T
Sbjct: 91 GHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 147 MIACYKGHYRIVKYLLSLN 165
I+ G+ + + L LN
Sbjct: 151 DISIDNGNEDLAEILQKLN 169
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 83 AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
AA AG V+ L+ +GA VN+ TPL A GH +V+ L+++GAD + +G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
T L +A GH IV+ LL AD+N K +G T LH A G +EI+++LL +GA ++
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 203 V-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
D +G T + G++ + E L LN
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
L+ A G V+ L++ AD+N G+T LH A+ G +EI+++LL +GA ++ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
+YG TPL AA GH IVE L+
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLL 100
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV T +G PL AA+ GHL IV+ L++
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNAT--------DNDGYTPLHLAASNGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
+GA VN+ T TPL A GH +V+ L++HGAD + GHT L +A GH I
Sbjct: 69 NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN+ TPL A +GH +V+ L+++GAD S+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
G T L +A GH IV+ LL AD+N + G+T LH A+ G +EI+++LL HGA
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
++ D +G T + G++ + E L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 69/128 (53%), Gaps = 9/128 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A NGH EIVE L+K ADV + + G PL AAA GHL IV+
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNG-ADVNAS--------DLTGITPLHLAAATGHLEIVE 97
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L++HGA VN+ TPL A GH +V+ L++HGAD ++ G T I+ G
Sbjct: 98 VLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157
Query: 154 HYRIVKYL 161
+ + + L
Sbjct: 158 NEDLAEIL 165
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
V+ L+ +GAD ++ G+T L +A GH IV+ LL AD+N G T LH A
Sbjct: 30 VRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAA 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
G +EI+++LL HGA ++ D+ G TPL AA GH IVE L+
Sbjct: 90 TGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
L+ A G V+ L++ AD+N + G T LH A G +EI+++LL +GA ++ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
G+TPL AA GH IVE L+
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLL 100
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADV---EETGAVMFD 70
V + G TPL +A + GH EIVE L+K ADV ++ G FD
Sbjct: 106 VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG-ADVNAQDKFGKTAFD 151
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 73/129 (56%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
+G+ PL AA G ++ L++HGA ++ + PL AC GHF VVK L++ A
Sbjct: 85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK 144
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
+ G+T L+ AC GH+ +V LL A +N ++KGNTALH+ + +++LL
Sbjct: 145 PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELL 204
Query: 195 LSHGARMDV 203
L HGA + V
Sbjct: 205 LLHGASVQV 213
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 101/213 (47%), Gaps = 19/213 (8%)
Query: 25 QMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWC-- 82
Q TK + L+ A +G E+V YL++ + D+E+ +TV A P +C
Sbjct: 2 QEETKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDA------EDTVSAADPEFCHP 55
Query: 83 -------AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
A A L V G VN ++ S+PL A G ++ L++HGA+
Sbjct: 56 LCQCPKCAPAQKRLAKVPA---SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA 112
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
N L +AC +GH+++VK LL NA N+K GNT L G E++ LLL
Sbjct: 113 GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL 172
Query: 196 SHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
HGA ++ ++ G T L A + H +VE L+
Sbjct: 173 QHGASINASNNKGNTALHEAVIEKHVFVVELLL 205
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 12/171 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G++PL +A +G +++ L+K GA D A PL A GH +V+
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGA----NAGARNADQ-----AVPLHLACQQGHFQVVK 136
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L++ AK N K + +TPL AC GH +V L++HGA SN G+T L A +
Sbjct: 137 CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEK 196
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS--IEILKLLLSHGARMD 202
H +V+ LL A + + + TA+ DCAE S +E+L+++ S A +D
Sbjct: 197 HVFVVELLLLHGASVQVLNKRQRTAV-DCAEQNSKIMELLQVVPSCVASLD 246
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN++ T TPL A GH +V+ L+++GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
G T L +A +GH IV+ LL AD+N S G T LH A+ G +EI+++LL +GA
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
++ D +G T + G++ + E L LN
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV + G PL AA GHL IV+ L++
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADV--------NARDFTGWTPLHLAAHFGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
+GA VN+K TPL A GH +V+ L+++GAD S+ HG T L +A +GH I
Sbjct: 69 NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 129 VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 9/139 (6%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA 86
V F G TPL +A GH EIVE L+K ADV ++ G PL AA
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNG-ADVNAKDSL--------GVTPLHLAARR 90
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
GHL IV+ L+++GA VN+ TPL A GH +V+ L+++GAD ++ G T
Sbjct: 91 GHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Query: 147 MIACYKGHYRIVKYLLSLN 165
I+ G+ + + L LN
Sbjct: 151 DISIDNGNEDLAEILQKLN 169
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 80/157 (50%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV T A G PL AA GHL IV+ L++
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNATDA--------SGLTPLHLAATYGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
HGA VN+ STPL A GH +V+ L++HGAD + G T L +A GH I
Sbjct: 69 HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 1/152 (0%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN+ + TPL A GH +V+ L++HGAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
G T L +A GH IV+ LL AD+N + G+T LH A G +EI+++LL HGA
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
++ D +G T + G++ + E L LN
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A GH EIVE L+K ADV + G+ PL AA GHL IV+
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHG-ADVNAI--------DIXGSTPLHLAALIGHLEIVE 97
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L++HGA VN+ TPL A GH +V+ L++HGAD ++ G T I+ G
Sbjct: 98 VLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157
Query: 154 HYRIVKYLLSLN 165
+ + + L LN
Sbjct: 158 NEDLAEILQKLN 169
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA 86
V G+TPL +A GH EIVE L+K ADV G PL AA
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVLLKHG-ADVNAV--------DTWGDTPLHLAAIM 123
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYL 128
GHL IV+ L++HGA VN++ + T + +G+ + + L
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 80/157 (50%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV T A G PL AA GHL IV+ L++
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNATDA--------SGLTPLHLAATYGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
HGA VN+ STPL A GH +V+ L++HGAD + G T L +A GH I
Sbjct: 69 HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 1/152 (0%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN+ + TPL A GH +V+ L++HGAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
G T L +A GH IV+ LL AD+N + G+T LH A G +EI+++LL HGA
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
++ D +G T + G++ + E L LN
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A GH EIVE L+K ADV + G+ PL AA GHL IV+
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHG-ADVNAI--------DIMGSTPLHLAALIGHLEIVE 97
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L++HGA VN+ TPL A GH +V+ L++HGAD ++ G T I+ G
Sbjct: 98 VLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157
Query: 154 HYRIVKYLLSLN 165
+ + + L LN
Sbjct: 158 NEDLAEILQKLN 169
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 1/152 (0%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN+ TPL A + GH +V+ L+++GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
G T L +A +GH +V+ LL AD+N G T LH A G +EI+++LL HGA
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
++ D +G T + G++ + E L LN
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV + V G PL AA GHL IV+ L++
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNASDHV--------GWTPLHLAAYFGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
+GA VN+ TPL A GH VV+ L+++GAD ++ +G T L +A GH I
Sbjct: 69 NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A GH EIVE L+K ADV ++ G PL AA GHL +V+
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNG-ADVNADDSL--------GVTPLHLAADRGHLEVVE 97
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+++GA VN+ TPL A GH +V+ L++HGAD ++ G T I+ G
Sbjct: 98 VLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157
Query: 154 HYRIVKYLLSLN 165
+ + + L LN
Sbjct: 158 NEDLAEILQKLN 169
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 2/162 (1%)
Query: 69 FDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYL 128
F E PL AA AGH+ I LV+ GA +++ + TPL A + H VKYL
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 129 VEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL-NADMNRKSSKGNTALHDCAEAGS 187
++ GA + + G TCL +A KGHY +V+YLLS D+N + G T + E
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 188 IEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIG 228
++++KLLLS G+ +++ D+ L AA G I E L+
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA 165
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 11/183 (6%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
TPL+ A N H E V+YL+K + D + EG+ L AA GH +VQ+L
Sbjct: 46 TPLMEAAENNHLEAVKYLIK---------AGALVDPKDAEGSTCLHLAAKKGHYEVVQYL 96
Query: 96 VEHGA-KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH 154
+ +G VN + TP+ A H +VK L+ G+D + + + CL A + G
Sbjct: 97 LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC 156
Query: 155 YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLA 213
I + LL+ D++ + G++ LH A + + L LS + + + + G TPL
Sbjct: 157 VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQC 216
Query: 214 AAV 216
A++
Sbjct: 217 ASL 219
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 107 RTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNA 166
+ +PL AA GH + LV+ GA+ + + T LM A H VKYL+ A
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 167 DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMTPLLAAAVVGHQHIV 223
++ K ++G+T LH A+ G E+++ LLS+G +MDV D G TP++ A H +V
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG-QMDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 224 EYLIG----LNIVSRKEKI 238
+ L+ +NI +E I
Sbjct: 128 KLLLSKGSDINIRDNEENI 146
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 13/156 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADV--EETGAVMFDHETVEGAPPLWCAAAAGHLPI 91
G+T L +A + GH E+V+YL+ + DV ++ G G P+ A H+ +
Sbjct: 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG----------GWTPMIWATEYKHVDL 126
Query: 92 VQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACY 151
V+ L+ G+ +N + + L A F G + + L+ D N HG + L IA
Sbjct: 127 VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR 186
Query: 152 KGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS 187
+ Y V LS ++D+ K+ +G T L CA S
Sbjct: 187 ENRYDCVVLFLSRDSDVTLKNKEGETPLQ-CASLNS 221
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN++ TPL A GH +V+ L+++GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
G T L +A +GH IV+ LL AD+N + G+T LH A+ G +EI+++LL +GA
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
++ D +G T + G++ + E L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV + E G PL AA GHL IV+ L++
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADV--------NAEDTYGDTPLHLAARVGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
+GA VN+ + STPL A GH +V+ L+++GAD + G T L +A GH I
Sbjct: 69 NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 9/128 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A R GH EIVE L+K ADV A+ F G+ PL AA GHL IV+
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNG-ADVN---ALDF-----SGSTPLHLAAKRGHLEIVE 97
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+++GA VN+ STPL A GH +V+ L+++GAD ++ G T I+ G
Sbjct: 98 VLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
Query: 154 HYRIVKYL 161
+ + + L
Sbjct: 158 NEDLAEIL 165
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
V+ L+ +GAD + +G T L +A GH IV+ LL AD+N G+T LH A+
Sbjct: 30 VRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAK 89
Query: 185 AGSIEILKLLLSHGARMDVD-SYGMTPLLAAAVVGHQHIVEYLI 227
G +EI+++LL +GA ++ D + G TPL AA GH IVE L+
Sbjct: 90 RGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLL 133
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA 86
V F G+TPL +A + GH EIVE L+K ADV + G+ PL AA
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLK-YGADVNADDTI--------GSTPLHLAADT 123
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYL 128
GHL IV+ L+++GA VN++ + T + +G+ + + L
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VD 204
L+ A G V+ L++ AD+N + + G+T LH A G +EI+++LL +GA ++ +D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
G TPL AA GH IVE L+
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLL 100
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 83 AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
AA AG V+ L+ +GA VN+ TPL A + GH +V+ L+++GAD + G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
T L +A + GH IV+ LL AD+N K G T LH A G +EI+++LL +GA ++
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 203 V-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
D +G T + G++ + E L LN
Sbjct: 141 AQDKFGKTAFDISINNGNEDLAEILQKLN 169
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 80/157 (50%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV V G PL AA GHL IV+ L++
Sbjct: 18 LLEAARAGRDDEVRILMANG-ADVNAADVV--------GWTPLHLAAYWGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
+GA VN+ STPL A GH +V+ L+++GAD + +G T L +A +GH I
Sbjct: 69 NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G TA G+ ++ ++L
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A GH EIVE L+K GA + ++T+ G+ PL AA GHL IV+
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLK--------NGADVNAYDTL-GSTPLHLAAHFGHLEIVE 97
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+++GA VN+K TPL A GH +V+ L+++GAD ++ G T I+ G
Sbjct: 98 VLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNG 157
Query: 154 HYRIVKYLLSLN 165
+ + + L LN
Sbjct: 158 NEDLAEILQKLN 169
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
L+ A G V+ L++ AD+N G T LH A G +EI+++LL +GA ++ D
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
+ G TPL AA GH IVE L+
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLL 100
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ AD A +DH G PL AAA GHL IV+ L+
Sbjct: 6 LLEAARAGQDDEVRILMANG-AD-----ANAYDHY---GRTPLHMAAAVGHLEIVEVLLR 56
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
+GA VN+ +TPL A GH +V+ L+++GAD + G T L +A Y GH I
Sbjct: 57 NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEI 116
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
V+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 117 VEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 1/148 (0%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA N+ TPL A GH +V+ L+ +GAD +
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+G T L +A GH IV+ LL AD+N K + G T L+ A G +EI+++LL HGA
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
++ D +G T + +G++ + E L
Sbjct: 126 DVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 69/128 (53%), Gaps = 9/128 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL MA GH EIVE L++ ADV G PL AA+ GHL IV+
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNG-ADVNAV--------DTNGTTPLHLAASLGHLEIVE 85
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+++GA VN+K T TPL A + GH +V+ L++HGAD ++ G T I+ G
Sbjct: 86 VLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIG 145
Query: 154 HYRIVKYL 161
+ + + L
Sbjct: 146 NEDLAEIL 153
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
V+ L+ +GAD + +G T L +A GH IV+ LL AD+N + G T LH A
Sbjct: 18 VRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAAS 77
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
G +EI+++LL +GA ++ D+ G+TPL AA GH IVE L+
Sbjct: 78 LGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VD 204
L+ A G V+ L++ AD N G T LH A G +EI+++LL +GA ++ VD
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
+ G TPL AA +GH IVE L+
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLL 88
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 10/190 (5%)
Query: 26 MVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAA 85
+ T+ T L AC GH EIVE+L+ + G + D + G PL AA+
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLL--------QLGVPVNDKDDA-GWSPLHIAAS 82
Query: 86 AGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTC 145
AG IV+ L+ GA+VN+ + TPL A + L+E GA+ + + + T
Sbjct: 83 AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATA 142
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS 205
+ A KG+ +++ LL A N + ++GNT LH + +E KLL+S GA + +++
Sbjct: 143 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 202
Query: 206 Y-GMTPLLAA 214
TPL A
Sbjct: 203 KEEKTPLQVA 212
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
+++ T L AC GH IV++LL L +N K G + LH A AG EI+K LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 198 GARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
GA+++ V+ G TPL AA I L+
Sbjct: 96 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 170 RKSSKGNTALHDCAEAGSIEILKLLLSHGARM-DVDSYGMTPLLAAAVVGHQHIVEYLIG 228
R TALH AG EI++ LL G + D D G +PL AA G IV+ L+G
Sbjct: 35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG 94
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 10/190 (5%)
Query: 26 MVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAA 85
+ T+ T L AC GH EIVE+L+ + G + D + G PL AA+
Sbjct: 33 LATRTDQDSRTALHWACSAGHTEIVEFLL--------QLGVPVNDKDDA-GWSPLHIAAS 83
Query: 86 AGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTC 145
AG IV+ L+ GA+VN+ + TPL A + L+E GA+ + + + T
Sbjct: 84 AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATA 143
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS 205
+ A KG+ +++ LL A N + ++GNT LH + +E KLL+S GA + +++
Sbjct: 144 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 203
Query: 206 Y-GMTPLLAA 214
TPL A
Sbjct: 204 KEEKTPLQVA 213
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
+++ T L AC GH IV++LL L +N K G + LH A AG EI+K LL
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 198 GARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
GA+++ V+ G TPL AA I L+
Sbjct: 97 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 127
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 170 RKSSKGNTALHDCAEAGSIEILKLLLSHGARM-DVDSYGMTPLLAAAVVGHQHIVEYLIG 228
R TALH AG EI++ LL G + D D G +PL AA G IV+ L+G
Sbjct: 36 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG 95
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 53/92 (57%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
G PL AA GHL +V+ L+E GA VN+K + TPL A +GH VVK L+E GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNA 166
+++G T L +A GH +VK LL A
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 52/89 (58%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
TPL A +GH VVK L+E GAD +++G T L +A GH +VK LL AD+N
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGA 199
K G T LH A G +E++KLLL GA
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 58/100 (58%), Gaps = 9/100 (9%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A RNGH E+V+ L+ E ADV + + G PL AA GHL +V+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-EAGADV--------NAKDKNGRTPLHLAARNGHLEVVK 52
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
L+E GA VN+K + TPL A +GH VVK L+E GA
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 141 HGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGAR 200
+G T L +A GH +VK LL AD+N K G T LH A G +E++KLLL GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 201 MDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
++ D G TPL AA GH +V+ L+
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 10/200 (5%)
Query: 16 LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE 75
L+ R + + T+ T L AC GH EIVE+L+ + G + D +
Sbjct: 22 LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL--------QLGVPVNDKDDA- 72
Query: 76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
G PL AA+AG IV+ L+ GA VN+ + TPL A + L+E GA+
Sbjct: 73 GWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
+ + + T + A KG+ ++V LL A N + ++GNT LH + +E K L+
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Query: 196 SHGARMDVDSY-GMTPLLAA 214
+ GA + +++ TPL A
Sbjct: 193 TQGASIYIENKEEKTPLQVA 212
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
+++ T L AC GH IV++LL L +N K G + LH A AG EI+K LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 198 GARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
GA ++ V+ G TPL AA I L+
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 10/200 (5%)
Query: 16 LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE 75
L+ R + + T+ T L AC GH EIVE+L+ + G + D +
Sbjct: 22 LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL--------QLGVPVNDKDDA- 72
Query: 76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
G PL AA+AG IV+ L+ GA VN+ + TPL A + L+E GA+
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
+ + + T + A KG+ ++V LL A N + ++GNT LH + +E K L+
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Query: 196 SHGARMDVDSY-GMTPLLAA 214
+ GA + +++ TPL A
Sbjct: 193 TQGASIYIENKEEKTPLQVA 212
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
+++ T L AC GH IV++LL L +N K G + LH A AG EI+K LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 198 GARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
GA ++ V+ G TPL AA I L+
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 3/131 (2%)
Query: 74 VEG--APPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH 131
+EG + PL AA + +V++L++HGA V++K + PL AC GH+ V + LV+H
Sbjct: 42 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 101
Query: 132 GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
GA V++ T L A KG Y I K LL AD +K+ GNT L D + G +I
Sbjct: 102 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL-DLVKDGDTDIQ 160
Query: 192 KLLLSHGARMD 202
LL A +D
Sbjct: 161 DLLRGDAALLD 171
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
GG PL AC GH E+ E LVK GAV+ + + PL AAA G I
Sbjct: 78 GGLVPLHNACSYGHYEVAELLVKH--------GAVV-NVADLWKFTPLHEAAAKGKYEIC 128
Query: 93 QFLVEHGAKVNSKTRTNSTPL 113
+ L++HGA K R +TPL
Sbjct: 129 KLLLQHGADPTKKNRDGNTPL 149
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 144 TCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
T L A +V+YLL AD++ K G LH+ G E+ +LL+ HGA ++V
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 204 -DSYGMTPLLAAAVVGHQHIVEYLI 227
D + TPL AA G I + L+
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLL 132
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG--NTALHDCAEAGSIEILK 192
+ N L+ A G VK L ++ + +N + +G +T LH A + +++
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 63
Query: 193 LLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
LL HGA + D G+ PL A GH + E L+
Sbjct: 64 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV 99
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 74 VEG--APPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH 131
+EG + PL AA + +V++L++HGA V++K + PL AC GH+ V + LV+H
Sbjct: 40 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 99
Query: 132 GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
GA V++ T L A KG Y I K LL AD +K+ GNT L D + G +I
Sbjct: 100 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL-DLVKDGDTDIQ 158
Query: 192 KLLLSHGA 199
LL A
Sbjct: 159 DLLRGDAA 166
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
GG PL AC GH E+ E LVK GAV+ + + PL AAA G I
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVKH--------GAVV-NVADLWKFTPLHEAAAKGKYEIC 126
Query: 93 QFLVEHGAKVNSKTRTNSTPL 113
+ L++HGA K R +TPL
Sbjct: 127 KLLLQHGADPTKKNRDGNTPL 147
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 144 TCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
T L A +V+YLL AD++ K G LH+ G E+ +LL+ HGA ++V
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 204 -DSYGMTPLLAAAVVGHQHIVEYLI 227
D + TPL AA G I + L+
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLL 130
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKG--NTALHDCAEAGSIEILKLLLSHGARMDV 203
L+ A G VK L ++ + +N + +G +T LH A + +++ LL HGA +
Sbjct: 14 LLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 204 -DSYGMTPLLAAAVVGHQHIVEYLI 227
D G+ PL A GH + E L+
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELLV 97
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 74 VEG--APPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH 131
+EG + PL AA + +V++L++HGA V++K + PL AC GH+ V + LV+H
Sbjct: 38 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 97
Query: 132 GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
GA V++ T L A KG Y I K LL AD +K+ GNT L D + G +I
Sbjct: 98 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL-DLVKDGDTDIQ 156
Query: 192 KLLLSHGA 199
LL A
Sbjct: 157 DLLRGDAA 164
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
GG PL AC GH E+ E LVK GAV+ + + PL AAA G I
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKH--------GAVV-NVADLWKFTPLHEAAAKGKYEIC 124
Query: 93 QFLVEHGAKVNSKTRTNSTPL 113
+ L++HGA K R +TPL
Sbjct: 125 KLLLQHGADPTKKNRDGNTPL 145
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 144 TCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
T L A +V+YLL AD++ K G LH+ G E+ +LL+ HGA ++V
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 204 -DSYGMTPLLAAAVVGHQHIVEYLI 227
D + TPL AA G I + L+
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLL 128
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 137 VSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG--NTALHDCAEAGSIEILKLL 194
+ N L+ A G VK L ++ + +N + +G +T LH A + +++ L
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61
Query: 195 LSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
L HGA + D G+ PL A GH + E L+
Sbjct: 62 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV 95
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 60/104 (57%)
Query: 106 TRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLN 165
++ +TPL A +GH VK L+ GAD ++ G+T L +A GH IVK LL+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 166 ADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMT 209
AD+N +S GNT H + G EI+KLL + GA ++ S+G +
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSS 109
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
+ +G PL AA GH V+ L+ GA VN++++ +TPL A +GH +VK L+ G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS 172
AD ++ G+T +A GH+ IVK L + AD+N +S
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL A +NGH E V+ L+ + ADV + +G PL AA GH IV+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKG-ADVNA--------RSKDGNTPLHLAAKNGHAEIVK 59
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEV 137
L+ GA VN++++ +TP A +GH +VK L GAD
Sbjct: 60 LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 172 SSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSY-GMTPLLAAAVVGHQHIVEYLI--G 228
S GNT LH+ A+ G E +K LLS GA ++ S G TPL AA GH IV+ L+ G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 229 LNIVSRKEKIDALELL 244
++ +R + + E L
Sbjct: 66 ADVNARSKDGNTPEHL 81
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A +NGH EIV+ L+ + ADV + +G P A GH IV+
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAKG-ADVNA--------RSKDGNTPEHLAKKNGHHEIVK 92
Query: 94 FLVEHGAKVNSKTRTNS 110
L GA VN+++ +S
Sbjct: 93 LLDAKGADVNARSWGSS 109
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 9/159 (5%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
TPL++AC G + ++ LV+ + + +EG+ L A L I + L
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDK---------LEDKDIEGSTALIWAVKNNRLGIAEKL 87
Query: 96 VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
+ G+ VN+K + TPL + G+ + +L+EHGA+ N G T L++A G
Sbjct: 88 LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147
Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
IVK LL L AD++ + G TA G E++K+
Sbjct: 148 EIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 5/183 (2%)
Query: 43 RNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKV 102
+NG EIVE + E + + + ++ PL A G + LVE+ K+
Sbjct: 6 KNG--EIVEKIKDE--KSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL 61
Query: 103 NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLL 162
K ST L A + G+ + L+ G++ + G T LM + G+ + +LL
Sbjct: 62 EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL 121
Query: 163 SLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQH 221
A++N ++ +G T L ++ G EI+K LL GA + D G+T +A + G Q
Sbjct: 122 EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE 181
Query: 222 IVE 224
+++
Sbjct: 182 VIK 184
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Query: 103 NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLL 162
N + N TPL AC G + LVE+ E + G T L+ A I + LL
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 163 SLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM-DVDSYGMTPLLAAAVVGHQH 221
S +++N K G T L G E+ LL HGA + D + G TPL+ A+ G
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 222 IVEYL--IGLNIVSR 234
IV+ L +G +I +R
Sbjct: 149 IVKKLLELGADISAR 163
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 20/201 (9%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
LI A +N ++V+ L+ E GA + E G PL A IV+ L+
Sbjct: 9 LIKAVQNEDVDLVQQLL--------EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
HGA + + +TP A G ++K + GAD + +G T M A G +
Sbjct: 61 HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120
Query: 158 VKYLLSLNADMN-RKSSK---------GNTALHDCAEAGSIEILKLLLSH-GARMDV-DS 205
+K+L A++N R+ +K G TAL D AE G +E+LK+LL GA ++ D+
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180
Query: 206 YGMTPLLAAAVVGHQHIVEYL 226
G L+ A + VE +
Sbjct: 181 MGRNALIHALLSSDDSDVEAI 201
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 104/240 (43%), Gaps = 36/240 (15%)
Query: 15 FLEARTHEEIQMVTKFKFGGA-----------TPLIMACRNGHKEIVEYLVKECKADVEE 63
++A +E++ +V + GGA TPL A + ++IVE L++ V
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-- 66
Query: 64 TGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFG 123
GA P AA AG + +++ + GA VN T A G
Sbjct: 67 -------LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119
Query: 124 VVKYLVEHGA----------DFEVSNRHGHTCLMIACYKGHYRIVKYLLS-LNADMNRKS 172
+K+L + GA D E + G T LM A KGH ++K LL + AD+N
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179
Query: 173 SKGNTALHDC---AEAGSIE-ILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
+ G AL ++ +E I LLL HGA ++V G TPL+ A H +V+ L+
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 81/184 (44%), Gaps = 9/184 (4%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE--GAPPLWCAA 84
V + F G T + A G + +++L K A+V D E + GA L AA
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATALMDAA 156
Query: 85 AAGHLPIVQFLV-EHGAKVNSKTRTNSTPLRAACFDGHFGVVK----YLVEHGADFEVSN 139
GH+ +++ L+ E GA VN+ L A V+ L++HGAD V
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 216
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLN-ADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
G T L++A K H +V+ LL ++N S G TAL E +I +LL G
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276
Query: 199 ARMD 202
A D
Sbjct: 277 ASTD 280
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 16 LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADV---EETGAVMFDHE 72
L +T E+ + + K GGAT L+ A GH E+++ L+ E ADV + G H
Sbjct: 133 LRRKTKEDQERLRK---GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH- 188
Query: 73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
L + + I L++HGA VN + TPL A H G+V+ L+E
Sbjct: 189 ------ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242
Query: 133 -ADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
+ ++ G T L++A +I + L
Sbjct: 243 HIEINDTDSDGKTALLLAVELKLKKIAELL 272
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 93/204 (45%), Gaps = 20/204 (9%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
LI A +N ++V+ L+ E GA + E G PL A IV+ L+
Sbjct: 29 LIKAVQNEDVDLVQQLL--------EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 80
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
HGA + + +TP A G ++K + GAD + +G T M A G +
Sbjct: 81 HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 140
Query: 158 VKYLLSLNADMN-RKSSK---------GNTALHDCAEAGSIEILKLLLSH-GARMDV-DS 205
+K+L A++N R+ +K G TAL D AE G +E+LK+LL GA ++ D+
Sbjct: 141 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 200
Query: 206 YGMTPLLAAAVVGHQHIVEYLIGL 229
G L+ A + VE + L
Sbjct: 201 MGRNALIHALLSSDDSDVEAITHL 224
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 104/240 (43%), Gaps = 36/240 (15%)
Query: 15 FLEARTHEEIQMVTKFKFGGA-----------TPLIMACRNGHKEIVEYLVKECKADVEE 63
++A +E++ +V + GGA TPL A + ++IVE L++ V
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-- 86
Query: 64 TGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFG 123
GA P AA AG + +++ + GA VN T A G
Sbjct: 87 -------LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 139
Query: 124 VVKYLVEHGA----------DFEVSNRHGHTCLMIACYKGHYRIVKYLLS-LNADMNRKS 172
+K+L + GA D E + G T LM A KGH ++K LL + AD+N
Sbjct: 140 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 199
Query: 173 SKGNTALHDC---AEAGSIE-ILKLLLSHGARMDVD-SYGMTPLLAAAVVGHQHIVEYLI 227
+ G AL ++ +E I LLL HGA ++V G TPL+ A H +V+ L+
Sbjct: 200 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 19/191 (9%)
Query: 16 LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADV---EETGAVMFDHE 72
L +T E+ + + K GGAT L+ A GH E+++ L+ E ADV + G H
Sbjct: 153 LRRKTKEDQERLRK---GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH- 208
Query: 73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
L + + I L++HGA VN + TPL A H G+V+ L+E
Sbjct: 209 ------ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 262
Query: 133 -ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
+ ++ G T L++A +I + L A S+ + ++
Sbjct: 263 HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA-----STDCGDLVMTARRNYDHSLV 317
Query: 192 KLLLSHGARMD 202
K+LLSHGA+ D
Sbjct: 318 KVLLSHGAKED 328
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV +G PL AA HL IV+ L++
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNAN--------DRKGNTPLHLAADYDHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
HGA VN+ STPL A GH +V+ L++HGAD ++ G T I+ G+ +
Sbjct: 69 HGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 158 VKYLLSLN 165
+ L LN
Sbjct: 129 AEILQKLN 136
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN+ R +TPL A H +V+ L++HGAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
G T L +A GH IV+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
V+ L+ +GAD ++R G+T L +A H IV+ LL AD+N + G+T LH A
Sbjct: 30 VRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAAL 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
G +EI+++LL HGA ++ D +G T + G++ + E L LN
Sbjct: 90 FGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A H EIVE L+K GA + H+ +G+ PL AA GHL IV+
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKH--------GADVNAHDN-DGSTPLHLAALFGHLEIVE 97
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYL 128
L++HGA VN++ + T + +G+ + + L
Sbjct: 98 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 102/237 (43%), Gaps = 45/237 (18%)
Query: 32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPI 91
F + AC +G E V L+ E GA + ++ V+G L A ++ +
Sbjct: 38 FDDGAVFLAACSSGDTEEVLRLL--------ERGADI-NYANVDGLTALHQACIDDNVDM 88
Query: 92 VQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMI--- 148
V+FLVE+GA +N PL AA G+ + +YL+ GA N G T L I
Sbjct: 89 VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE 148
Query: 149 -------------------ACYKGHYRIV-----KYLLSLNADMNRKSSKGNTALHDCAE 184
A K RI+ ++L S + + R + G TALH A
Sbjct: 149 EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA 208
Query: 185 AGSIEILKLLLSHGARMDV---DSYGMTPLLAAAVVGHQH----IVEYLIGLNIVSR 234
G E+LKLL+ AR DV D G TPL AAA G + +VE L + V++
Sbjct: 209 KGYTEVLKLLIQ--ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK 263
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 41/221 (18%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G T L AC + + ++V++LV E GA + EG PL AA+ G+L I +
Sbjct: 73 GLTALHQACIDDNVDMVKFLV--------ENGA-NINQPDNEGWIPLHAAASCGYLDIAE 123
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV-EHGADFEVSN------------- 139
+L+ GA V + TPL A + +++ V G D E +
Sbjct: 124 YLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ 183
Query: 140 ----------RH---GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG 186
RH G T L +A KG+ ++K L+ D+N K G T LH A G
Sbjct: 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG 243
Query: 187 SIEILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYL 226
E ++L+ + M+ V+ G T A V + I+ YL
Sbjct: 244 KEEACRILVENLCDMEAVNKVGQT----AFDVADEDILGYL 280
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
G L AAA G+ +++ L++ VN K TPL AA G + LVE+ D
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMN 169
E N+ G T +A I+ YL L N
Sbjct: 259 EAVNKVGQTAFDVA----DEDILGYLEELQKKQN 288
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV M D G PL AA GHL IV+ L++
Sbjct: 18 LLEATRAGQDDEVRILMANG-ADVN----AMDD----AGVTPLHLAAKRGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
HGA VN+ TPL A GH +V+ L+E+GAD ++ G T I+ G+ +
Sbjct: 69 HGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 158 VKYLLSLN 165
+ L LN
Sbjct: 129 AEILQKLN 136
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 60/115 (52%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L A AG V+ L+ +GA VN+ TPL A GH +V+ L++HGAD S+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
G T L +A GH IV+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
V+ L+ +GAD + G T L +A +GH IV+ LL AD+N S G T LH A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
G +EI+++LL +GA ++ D +G T + G++ + E L LN
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA 86
V G TPL +A + GH EIVE L+K ADV + + G PL AA
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDSW--------GRTPLHLAATV 90
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYL 128
GHL IV+ L+E+GA VN++ + T + +G+ + + L
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV M D G PL AA GHL IV+ L++
Sbjct: 18 LLEATRAGQDDEVRILMANG-ADVN----AMDD----AGVTPLHLAAKRGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
HGA VN++ TPL A GH +V+ L+E+GAD ++ G T I+ G+ +
Sbjct: 69 HGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 158 VKYLLSLN 165
+ L LN
Sbjct: 129 AEILQKLN 136
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 59/115 (51%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L A AG V+ L+ +GA VN+ TPL A GH +V+ L++HGAD +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
G T L +A GH IV+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
V+ L+ +GAD + G T L +A +GH IV+ LL AD+N + G T LH A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAAT 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
G +EI+++LL +GA ++ D +G T + G++ + E L LN
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA 86
V G TPL +A + GH EIVE L+K ADV + + G PL AA
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADV--------NARDIWGRTPLHLAATV 90
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYL 128
GHL IV+ L+E+GA VN++ + T + +G+ + + L
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
+G PL AA GHL IV+ L+++GA VN++ TPL A GH +V+ L++HGAD
Sbjct: 46 DGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD 105
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLN 165
++ G T I+ G+ + + L LN
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN+ TPL A GH +V+ L+++GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
G T L +A +GH IV+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
V+ L+ +GAD + G T L +A GH IV+ LL AD+N + + G T LH A
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAI 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
G +EI+++LL HGA ++ D +G T + G++ + E L LN
Sbjct: 90 RGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA 86
V G TPL +A + GH EIVE L+K ADV + E G PL AA
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLK-YGADV--------NAEDNFGITPLHLAAIR 90
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYL 128
GHL IV+ L++HGA VN++ + T + +G+ + + L
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
T L A G V+YL+++G+D V + G T L AC GH ++V+ LL A +N
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGA-RMDVDSYGMTPL 211
+ ++ LHD A+ G ++I+KLLLS+GA R V+ +G+ P+
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L A+ G +P V++L+++G+ N K TPL AC GH VV+ L++H A +
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMN 169
+ L A GH IVK LLS A N
Sbjct: 74 YQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
+N G T L IA KG V+YLL +D N K G T LH+ G +++++LLL H
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 198 GARMDVDSY-GMTPLLAAAVVGHQHIVEYLI 227
A ++ Y +PL AA GH IV+ L+
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G T L +A G VEYL++ + + DH G PL A GHL +V+
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNG------SDPNVKDHA---GWTPLHEACNHGHLKVVE 60
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
L++H A VN+ N +PL A +GH +VK L+ +GA N G
Sbjct: 61 LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV M D G PL AA GHL IV+ L++
Sbjct: 18 LLEATRAGQDDEVRILMANG-ADVN----AMDD----AGVTPLHLAAKRGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
HGA VN+ TPL A GH +V+ L+E+GAD ++ G T I+ G+ +
Sbjct: 69 HGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 158 VKYLLSLN 165
+ L LN
Sbjct: 129 AEILQKLN 136
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 60/115 (52%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L A AG V+ L+ +GA VN+ TPL A GH +V+ L++HGAD S+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
G T L +A GH IV+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
V+ L+ +GAD + G T L +A +GH IV+ LL AD+N G T LH A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAAT 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
G +EI+++LL +GA ++ D +G T + G++ + E L LN
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA 86
V G TPL +A + GH EIVE L+K ADV + + G PL AA
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNAS--------DIWGRTPLHLAATV 90
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYL 128
GHL IV+ L+E+GA VN++ + T + +G+ + + L
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%)
Query: 76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
G PL+ A A GHL IV+ L+++GA VN+ TPL A F GH + + L++HGAD
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLN 165
++ G T I+ G+ + + L LN
Sbjct: 107 NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN+K TPL A GH +V+ L+++GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
G T L +A + GH I + LL AD+N + G TA G+ ++ ++L
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
V+ L+ +GAD + +G T L +A GH IV+ LL AD+N + G T LH A
Sbjct: 30 VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
G +EI ++LL HGA ++ D +G T + G++ + E L LN
Sbjct: 90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A +GH EIVE L+K ADV A+ F PL AA GHL I +
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDAIGF--------TPLHLAAFIGHLEIAE 97
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGH 121
L++HGA VN++ + T + +G+
Sbjct: 98 VLLKHGADVNAQDKFGKTAFDISIGNGN 125
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%)
Query: 83 AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
AA AG V+ L +GA VN+ TPL A GH +V+ L+++GAD + G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
T L +A + H IV+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L ADV G PL AA GHL IV+ L++
Sbjct: 18 LLEAARAGQDDEVRILTANG-ADVNAN--------DYWGHTPLHLAAMLGHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
+GA VN+ T TPL A + H +V+ L++HGAD ++ G T I+ G+ +
Sbjct: 69 NGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 158 VKYLLSL 164
+ L L
Sbjct: 129 AEILQKL 135
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
V+ L +GAD ++ GHT L +A GH IV+ LL AD+N + G T LH A
Sbjct: 30 VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAW 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
A +EI+++LL HGA ++ D +G T + G++ + E L
Sbjct: 90 ADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA 86
V + G TPL +A GH EIVE L+K ADV TG G PL AA A
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNG-ADVNATGNT--------GRTPLHLAAWA 90
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYL 128
HL IV+ L++HGA VN++ + T + +G+ + + L
Sbjct: 91 DHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VD 204
L+ A G V+ L + AD+N G+T LH A G +EI+++LL +GA ++
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
+ G TPL AA H IVE L+
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLL 100
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN++ + TPL A + H +V+ L+++GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
G T L + GH IV+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV V G PL AA HL IV+ L++
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNAEDKV--------GLTPLHLAAMNDHLEIVEVLLK 68
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
+GA VN+ TPL GH +V+ L++HGAD ++ G T I+ G+ +
Sbjct: 69 NGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 158 VKYLLSLN 165
+ L LN
Sbjct: 129 AEILQKLN 136
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS 172
L A G V+ L+ +GAD ++ G T L +A H IV+ LL AD+N
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 173 SKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
+ G T LH A G +EI+++LL HGA ++ D +G T + G++ + E L LN
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A N H EIVE L+K ADV A+ G PL A GHL IV+
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNG-ADVNAIDAI--------GETPLHLVAMYGHLEIVE 97
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYL 128
L++HGA VN++ + T + +G+ + + L
Sbjct: 98 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
P+ AA GH ++ L+ G VN T + +PL AC GH VK L++HGA
Sbjct: 6 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 65
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
HT L AC G + V LL A + +S + +H+ A G +E + L+++G
Sbjct: 66 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYG 124
Query: 199 ARMDVD-SYGMTPLLAA 214
+D S+ TPL A
Sbjct: 125 GNIDHKISHLGTPLYLA 141
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 10/180 (5%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
+P+ A +GH+ + L+ + A + DH + PL A GHL V+ L
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWA----VNIITADHVS-----PLHEACLGGHLSCVKIL 55
Query: 96 VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
++HGA+VN T TPL AC G + V L++HGA + + + + A +GH
Sbjct: 56 LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHV 114
Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAA 215
V L++ +++ K S T L+ E +K LL GA ++ +PL A A
Sbjct: 115 ECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVA 174
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 11/164 (6%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
+PL AC GH V+ L+K + V D T PL+ A +G V L
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGA----QVNGVTADWHT-----PLFNACVSGSWDCVNLL 88
Query: 96 VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
++HGA V ++ ++P+ A GH V L+ +G + + H T L +AC
Sbjct: 89 LQHGASVQPESDL-ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR 147
Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
VK LL AD+N+ + ++ LH A S E+ LL+ GA
Sbjct: 148 ACVKKLLESGADVNQGKGQ-DSPLHAVARTASEELACLLMDFGA 190
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%)
Query: 108 TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNAD 167
++ +P+ A GH ++ L+ G + + L AC GH VK LL A
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 168 MNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
+N ++ +T L + +GS + + LLL HGA + +S +P+ AA GH V LI
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLI 121
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 35 ATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQF 94
A+P+ A R GH E V L+ DH+ PL+ A V+
Sbjct: 102 ASPIHEAARRGHVECVNSLIAY---------GGNIDHKISHLGTPLYLACENQQRACVKK 152
Query: 95 LVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
L+E GA VN + + +PL A + L++ GAD + N G
Sbjct: 153 LLESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEG 199
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%)
Query: 68 MFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKY 127
+ +H EG PL AAA G + +V+FL+++GA + + L AC G+ +VK
Sbjct: 44 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 103
Query: 128 LVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS 187
L++ G D + +G T L+ A + H + VK LL AD ++ G ++ G
Sbjct: 104 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 163
Query: 188 IEILKLLLSH 197
+ +++ SH
Sbjct: 164 RSVQQVIESH 173
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 3/145 (2%)
Query: 84 AAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGH 143
AA G + + +E +N TPL A G VV++L+++GAD ++ +
Sbjct: 27 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE 86
Query: 144 TCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA--RM 201
+ L +AC KG+ IVK LL D+N G T L ++ +K+LL GA +
Sbjct: 87 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 146
Query: 202 DVDSYGMTPLLAAAVVGHQHIVEYL 226
+ DS G + A +G++ + + +
Sbjct: 147 ETDS-GYNSMDLAVALGYRSVQQVI 170
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 15 FLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETV 74
+L R +E ++ G TPL+ A +G +VE+L++ AD + G +
Sbjct: 34 YLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLG------KGR 85
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
E A L C + G+ IV+ L++ G VN TPL A H VK L+E GAD
Sbjct: 86 ESALSLAC--SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLL 162
+ G+ + +A G YR V+ ++
Sbjct: 144 PTIETDSGYNSMDLAVALG-YRSVQQVI 170
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%)
Query: 68 MFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKY 127
+ +H EG PL AAA G + +V+FL+++GA + + L AC G+ +VK
Sbjct: 28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 87
Query: 128 LVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS 187
L++ G D + +G T L+ A + H + VK LL AD ++ G ++ G
Sbjct: 88 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 147
Query: 188 IEILKLLLSH 197
+ +++ SH
Sbjct: 148 RSVQQVIESH 157
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Query: 84 AAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGH 143
AA G + + +E +N TPL A G VV++L+++GAD ++ +
Sbjct: 11 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE 70
Query: 144 TCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
+ L +AC KG+ IVK LL D+N G T L ++ +K+LL GA +
Sbjct: 71 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130
Query: 204 DS-YGMTPLLAAAVVGHQHIVEYL 226
++ G + A +G++ + + +
Sbjct: 131 ETDSGYNSMDLAVALGYRSVQQVI 154
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 15 FLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETV 74
+L R +E ++ G TPL+ A +G +VE+L++ AD + G +
Sbjct: 18 YLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLG------KGR 69
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
E A L C + G+ IV+ L++ G VN TPL A H VK L+E GAD
Sbjct: 70 ESALSLAC--SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLL 162
+ G+ + +A G YR V+ ++
Sbjct: 128 PTIETDSGYNSMDLAVALG-YRSVQQVI 154
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
P+ AA GH ++ L+ G VN T + +PL AC GH VK L++HGA
Sbjct: 62 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
HT L AC G + V LL A + +S + +H+ A G +E + L+++G
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYG 180
Query: 199 ARMD 202
+D
Sbjct: 181 GNID 184
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 11/164 (6%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
+PL AC GH V+ L+K + V D T PL+ A +G V L
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGA----QVNGVTADWHT-----PLFNACVSGSWDCVNLL 144
Query: 96 VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
++HGA V ++ ++P+ A GH V L+ +G + + H T L +AC
Sbjct: 145 LQHGASVQPESDL-ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR 203
Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
VK LL AD+N+ + ++ LH S E+ LL+ GA
Sbjct: 204 ACVKKLLESGADVNQGKGQ-DSPLHAVVRTASEELACLLMDFGA 246
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 108 TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNAD 167
++ +P+ A GH ++ L+ G + + L AC GH VK LL A
Sbjct: 58 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 168 MNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
+N ++ +T L + +GS + + LLL HGA + +S +P+ AA GH V LI
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLI 177
Query: 228 --GLNI 231
G NI
Sbjct: 178 AYGGNI 183
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 13/141 (9%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
TPL AC +G + V L++ + E+ HE AA GH+ V L
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHE----------AARRGHVECVNSL 176
Query: 96 VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK-GH 154
+ +G ++ K TPL AC + VK L+E GAD V+ G + A +
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD--VNQGKGQDSPLHAVVRTAS 234
Query: 155 YRIVKYLLSLNADMNRKSSKG 175
+ L+ AD K+++G
Sbjct: 235 EELACLLMDFGADTQAKNAEG 255
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 35 ATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQF 94
A+P+ A R GH E V L+ DH+ PL+ A V+
Sbjct: 158 ASPIHEAARRGHVECVNSLIAY---------GGNIDHKISHLGTPLYLACENQQRACVKK 208
Query: 95 LVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
L+E GA VN + + +PL A + L++ GAD + N G
Sbjct: 209 LLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEG 255
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%)
Query: 68 MFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKY 127
+ +H EG PL AAA G + +V+FL+++GA + + L AC G+ +VK
Sbjct: 26 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 85
Query: 128 LVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS 187
L++ G D + +G T L+ A + H + VK LL AD ++ G ++ G
Sbjct: 86 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 145
Query: 188 IEILKLLLSH 197
+ +++ SH
Sbjct: 146 RSVQQVIESH 155
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Query: 84 AAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGH 143
AA G + + +E +N TPL A G VV++L+++GAD ++ +
Sbjct: 9 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE 68
Query: 144 TCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
+ L +AC KG+ IVK LL D+N G T L ++ +K+LL GA +
Sbjct: 69 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 128
Query: 204 DS-YGMTPLLAAAVVGHQHIVEYL 226
++ G + A +G++ + + +
Sbjct: 129 ETDSGYNSMDLAVALGYRSVQQVI 152
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 15 FLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETV 74
+L R +E ++ G TPL+ A +G +VE+L++ AD + G +
Sbjct: 16 YLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLG------KGR 67
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
E A L C + G+ IV+ L++ G VN TPL A H VK L+E GAD
Sbjct: 68 ESALSLAC--SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLL 162
+ G+ + +A G YR V+ ++
Sbjct: 126 PTIETDSGYNSMDLAVALG-YRSVQQVI 152
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%)
Query: 76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
G PL AA GH + L+ G +++T+ + TPL A +GH +V+ L++HGAD
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
+ T L A H +V+ L+ AD++ +S TA + G+ ++ ++L
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G +PL +A + GH E L++ V D T PL AA+ GH IV+
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLR---------AGVSRDARTKVDRTPLHMAASEGHANIVE 84
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L++HGA VN+K T L A H VV+ L+++GAD ++ T I+ G
Sbjct: 85 VLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNG 144
Query: 154 HYRIVKYL 161
+ + + L
Sbjct: 145 NEDLAEIL 152
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 83 AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
AA AG V+ L+ +GA + ++PL A GHF + L+ G + +
Sbjct: 9 AARAGQDDEVRILMANGAPFTTDW-LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
T L +A +GH IV+ LL AD+N K TALH E E+++LL+ +GA +
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127
Query: 203 VDS 205
S
Sbjct: 128 TQS 130
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 179 LHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSR--KE 236
L + A AG + +++L+++GA D G +PL AA GH E L+ VSR +
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG-VSRDART 64
Query: 237 KIDALEL 243
K+D L
Sbjct: 65 KVDRTPL 71
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 175 GNTALHDCAEAGSIEILKLLLSHG----ARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
G + LH A+ G ++LL G AR VD TPL AA GH +IVE L+
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR---TPLHMAASEGHANIVEVLL 87
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
+ CR G+ V + + D+ + DH G PL A G +V+ L+
Sbjct: 4 IFTQCREGNAVAVRLWLDNTENDLNQGD----DH----GFSPLHWACREGRSAVVEMLIM 55
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
GA++N R + TPL A GH +V+ L+++ AD N HG+ L AC+ G ++
Sbjct: 56 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 115
Query: 158 VKYLLS 163
+ L++
Sbjct: 116 AEDLVA 121
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
+PL AC +G VV+ L+ GA V NR T L +A GH IV+ LL AD+N
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAA 214
+ GN LH G ++ + L+++GA + + + YG P+ A
Sbjct: 96 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 140
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query: 34 GATPLIMACRNGHKEIVEYLV-KECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
G +PL ACR G +VE L+ + + +V G PL AA+ GH IV
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRG----------DDTPLHLAASHGHRDIV 83
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
Q L+++ A +N+ + PL ACF G V + LV +GA + N++G
Sbjct: 84 QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 117 CFDGHFGVVK-YLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG 175
C +G+ V+ +L D + HG + L AC +G +V+ L+ A +N +
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 67
Query: 176 NTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
+T LH A G +I++ LL + A ++ V+ +G PL A G + E L+
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
+ CR G+ V + + D+ + DH G PL A G +V+ L+
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGD----DH----GFSPLHWACREGRSAVVEMLIM 60
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
GA++N R + TPL A GH +V+ L+++ AD N HG+ L AC+ G ++
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 120
Query: 158 VKYLLS 163
+ L++
Sbjct: 121 AEDLVA 126
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
+PL AC +G VV+ L+ GA V NR T L +A GH IV+ LL AD+N
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAA 214
+ GN LH G ++ + L+++GA + + + YG P+ A
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query: 34 GATPLIMACRNGHKEIVEYLV-KECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
G +PL ACR G +VE L+ + + +V G PL AA+ GH IV
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRG----------DDTPLHLAASHGHRDIV 88
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
Q L+++ A +N+ + PL ACF G V + LV +GA + N++G
Sbjct: 89 QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 117 CFDGHFGVVK-YLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG 175
C +G+ V+ +L D + HG + L AC +G +V+ L+ A +N +
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 176 NTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
+T LH A G +I++ LL + A ++ V+ +G PL A G + E L+
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A N EI + L+ + GA + ++ +P L+ A A G I+
Sbjct: 39 GNTPLNIAVHNNDIEIAKALI--------DRGADINLQNSISDSPYLY-AGAQGRTEILA 89
Query: 94 FLVEHGA-KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG-ADFEVSNRHGHTCLM--IA 149
++++H +N R L A GH VK L+E G D + N G+T L+ +
Sbjct: 90 YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149
Query: 150 CYKG---HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
+G + IVK L+ AD + K + G TA+ + G EI K+L +
Sbjct: 150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 5/147 (3%)
Query: 72 ETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH 131
+T E L A + + L + +V+ +TPL A + + K L++
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 132 GADFEVSNRHGHTCLMIACYKGHYRIVKYLLS-LNADMNRKSSKGNTALHDCAEAGSIEI 190
GAD + N + + A +G I+ Y+L D+N+ + G AL AE G I+
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDN 121
Query: 191 LKLLLSHGARMDVD---SYGMTPLLAA 214
+KLLL G R D+D +G T L+ A
Sbjct: 122 VKLLLEDG-REDIDFQNDFGYTALIEA 147
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
+P + A G EI+ Y++K D+ + G L AA GH+ V+ L
Sbjct: 74 SPYLYAGAQGRTEILAYMLKHATPDLNKHNRY--------GGNALIPAAEKGHIDNVKLL 125
Query: 96 VEHGAK-VNSKTRTNSTPLRAAC--FDG---HFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
+E G + ++ + T L A +G + +VK L+E+GAD + + G T + A
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185
Query: 150 CYKGHYRIVKYLLSLN 165
KG+ I K L N
Sbjct: 186 NQKGYTEISKILAQYN 201
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 172 SSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
++GNT L+ IEI K L+ GA +++ +S +P L A G I+ Y++
Sbjct: 36 DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML 92
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 95 LVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSNRHGHTCLMIACYKG 153
L++ GA NS+ T TPL AA GV + L+ + A + G T L++A
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
+V+ L++ +AD+N + G TALH A + E + +LL H A D D TPL
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 213 AAAVVGHQHIVEYLIGLNIVSRK 235
AA G + L+ N +R+
Sbjct: 190 LAAREGSYEASKALLD-NFANRE 211
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 2/153 (1%)
Query: 76 GAPPLWCAAAAGHLPIVQFLVEHGA-KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
G PL A AA + + Q L+ + A +N++ +TPL A G+V+ L+ AD
Sbjct: 84 GRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD 143
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
++ G T L A + V LL +A+ + + K T L A GS E K L
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKAL 203
Query: 195 LSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
L + A ++ D P A+ H IV L
Sbjct: 204 LDNFANREITDHMDRLPRDVASERLHHDIVRLL 236
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 119 DGHFGVVKYLVEHGADFEVS-NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNT 177
D V+ L+ GA+ + ++ G T L +A K LL AD N + + G T
Sbjct: 27 DSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRT 86
Query: 178 ALHDCAEAGSIEILKLLLSH-----GARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
LH A ++ + ++LL + ARM G TPL+ AA + + +VE LI
Sbjct: 87 PLHAAVAADAMGVFQILLRNRATNLNARM---HDGTTPLILAARLAIEGMVEDLI 138
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEY--LVKECKADVEETGAVMFDHETVEGAPPLWCAA 84
+ + G T L + N ++ V L+ E A V+ GA D E +G L AA
Sbjct: 228 IEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA 287
Query: 85 AAGHLPIVQFLV-EHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGH 143
+ PIV++LV E G+ + + TP+ A +G VV YL++ GA E + H
Sbjct: 288 QVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDH 347
Query: 144 TCLMIACYKGHYRIV 158
T +A H+ IV
Sbjct: 348 TARQLAQANNHHNIV 362
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 21/197 (10%)
Query: 47 KEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKT 106
++++ + KEC A + A D T PL A A +V +L + GA
Sbjct: 142 EDLIVHEAKECIAAGADVNAXDCDENT-----PLXLAVLARRRRLVAYLXKAGADPTIYN 196
Query: 107 RTNSTPLRAACFDGHFGVVKYLVEH---GADFEVSNRHGHTCLMIACY-KGHYRIV--KY 160
++ + L A + FG Y + D E +R+G T L I + +G ++ K
Sbjct: 197 KSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKL 256
Query: 161 LLSLNADMN-----RKSS---KGNTALHDCAEAGSIEILKLLLSH-GARMD-VDSYGMTP 210
L+ A ++ RK S KG TALH A+ + I+K L+ G+ D D G TP
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTP 316
Query: 211 LLAAAVVGHQHIVEYLI 227
+ AA G +V YLI
Sbjct: 317 IXLAAQEGRIEVVXYLI 333
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 66/156 (42%), Gaps = 16/156 (10%)
Query: 99 GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV 158
GA VN+ +TPL A +V YL + GAD + N+ + L A +
Sbjct: 156 GADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXX 215
Query: 159 KYLLS---LNADMNRKSSKGNTALHDCAE---AGSIEILKLLLSHGARMDVDS------- 205
Y L+ L D+ G TAL A + KLL+ GA++D D
Sbjct: 216 VYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 275
Query: 206 --YGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKID 239
G T L AA V + IV+YL+G S K+K D
Sbjct: 276 KYKGRTALHYAAQVSNXPIVKYLVGEK-GSNKDKQD 310
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 125 VKYLVEHGA--DFEVSNRH------GHTCLMIACYKGHYRIVKYLL-SLNADMNRKSSKG 175
K LVE GA D++ + R G T L A + IVKYL+ ++ +++ G
Sbjct: 254 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDG 313
Query: 176 NTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVE 224
T + A+ G IE++ L+ GA ++ VD+ T A H +IV+
Sbjct: 314 KTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVD 363
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 101/253 (39%), Gaps = 71/253 (28%)
Query: 35 ATPLIMACRNGHKEIVEYLVKECKADV--EETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
+TPL +A IV+ L++ ADV ++ G ++ PL A + GH +
Sbjct: 59 STPLHLAAGYNRVRIVQLLLQH-GADVHAKDKGGLV----------PLHNACSYGHYEVT 107
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC-- 150
+ L++HGA VN+ TPL A V L+ HGAD + N HG + + +A
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP 167
Query: 151 ---------YKGHY---------------------------------------------- 155
+KGH
Sbjct: 168 ELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRK 227
Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLLAA 214
++ + LL A++N K+ T LH AE +++++L HGA+M+ +DS G T L A
Sbjct: 228 QVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA 287
Query: 215 AVVGHQHIVEYLI 227
A+ GH L+
Sbjct: 288 ALAGHLQTCRLLL 300
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 71 HETVEGAPPLWCAAAAGHLP---IVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKY 127
HET L CA A+ H + + L+ GA VN K + TPL A H V++
Sbjct: 211 HETA-----LHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEV 265
Query: 128 LVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS 187
L +HGA + G T L A GH + + LLS +D + S +G TA A+ G+
Sbjct: 266 LHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA----AQMGN 321
Query: 188 IEILKLLLSHGARM---DVD 204
E ++ +LS M DVD
Sbjct: 322 -EAVQQILSESTPMRTSDVD 340
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAA 214
+++ L LN + + + +T LH A + I++LLL HGA + D G+ PL A
Sbjct: 39 KLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNA 98
Query: 215 AVVGHQHIVEYLI 227
GH + E L+
Sbjct: 99 CSYGHYEVTELLL 111
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
G I L++ GA N + + ++P+ A G +K LVEHGAD V + G +
Sbjct: 52 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 111
Query: 147 MIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
+A +GH +V + L+ +D++R+ ++G T L + G+ +++ +L H
Sbjct: 112 HLAVQEGHTAVVSF-LAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 161
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
NR G T L + + G I LL A N + + G + +HD A G ++ LK+L+ HG
Sbjct: 39 NRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 97
Query: 199 ARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKE 236
A ++V D G P+ A GH +V +L + + R++
Sbjct: 98 ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRD 136
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 72 ETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH 131
+ G P+ AA G L ++ LVEHGA VN T + P+ A +GH VV +L
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 129
Query: 132 GADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
+D + G T L +A +G +V L
Sbjct: 130 -SDLHRRDARGLTPLELALQRGAQDLVDIL 158
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 6/169 (3%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNS-KTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
E L AA + +V++ + GA V+ NSTPL A GH +V L+++GA
Sbjct: 41 ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100
Query: 134 DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCA-EAGSIEILK 192
D + + G +C+ +A GH IV YL++ D++ G T L A S++ +
Sbjct: 101 DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160
Query: 193 LLLSHGARMDV-DSY-GMTPLLAAAVVGHQHIVEYLI--GLNIVSRKEK 237
LLL+ +++ D Y T L A + G+ ++ L+ G N+ ++ K
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIK 209
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Query: 95 LVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF-EVSNRHGHTCLMIACYKG 153
LVE G V + N T L A + +VKY + GA ++ T L A +G
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLL 212
H +V L+ AD + +G + +H A+ G I+ L++ G +D +D GMTPL+
Sbjct: 88 HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLM 147
Query: 213 AAAVVGH 219
AA H
Sbjct: 148 WAAYRTH 154
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 31 KFGG---ATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAG 87
+ GG +TPL A R GH +V L+K G EG + AA G
Sbjct: 70 QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG---------EGCSCIHLAAQFG 120
Query: 88 HLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGH-FGVVKYLVEHGADFEVSNR-HGHTC 145
H IV +L+ G V+ + TPL A + H + L+ + ++ H +T
Sbjct: 121 HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTA 180
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTAL 179
L A G+ ++ LL A+++ ++ KG +AL
Sbjct: 181 LHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 26 MVTKFKFGGATPLI---------MACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEG 76
+V K+G LI +A + GH IV YL+ + + DV+ M D +
Sbjct: 92 VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ-DVD-----MMDQNGM-- 143
Query: 77 APPLWCAAAAGHLPIVQFLVEHGAKVNSKTRT-NSTPLRAACFDGHFGVVKYLVEHGADF 135
P +W A + + L+ VN + +T L A G+ V+ L+E GA+
Sbjct: 144 TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV 203
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYL 161
+ N G + L +A + + ++ +L
Sbjct: 204 DAQNIKGESALDLAKQRKNVWMINHL 229
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
G I L++ GA N + + ++P+ A G +K LVEHGAD V + G +
Sbjct: 46 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 105
Query: 147 MIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
+A +GH +V + L+ +D++R+ ++G T L + G+ +++ +L H
Sbjct: 106 HLAVQEGHTAVVSF-LAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
NR G T L + + G I LL A N + + G + +HD A G ++ LK+L+ HG
Sbjct: 33 NRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 91
Query: 199 ARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKE 236
A ++V D G P+ A GH +V +L + + R++
Sbjct: 92 ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRD 130
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 72 ETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH 131
+ G P+ AA G L ++ LVEHGA VN T + P+ A +GH VV +L
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123
Query: 132 GADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
+D + G T L +A +G +V L
Sbjct: 124 -SDLHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD---- 134
PL A I + L+ G + +TPL AC G V L +
Sbjct: 48 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107
Query: 135 --FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMN-RKSSKGNTALHDCAEAGSIEIL 191
+ +N +GHTCL +A G+ IV+ L+SL AD+N ++ G TALH + + +++
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 167
Query: 192 KLLLSHGARMDVDSY-GMTP 210
LLL GA ++ +Y G +P
Sbjct: 168 SLLLKCGADVNRVTYQGYSP 187
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 4/131 (3%)
Query: 32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPI 91
F G TPL +AC G V L + C + + G L A+ G+L I
Sbjct: 76 FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS---ILKATNYNGHTCLHLASIHGYLGI 132
Query: 92 VQFLVEHGAKVNSKTRTNS-TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC 150
V+ LV GA VN++ N T L A + +V L++ GAD G++ +
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 192
Query: 151 YKGHYRIVKYL 161
+ RI + L
Sbjct: 193 GRPSTRIQQQL 203
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD---- 134
PL A I + L+ G + +TPL AC G V L +
Sbjct: 45 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 104
Query: 135 --FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMN-RKSSKGNTALHDCAEAGSIEIL 191
+ +N +GHTCL +A G+ IV+ L+SL AD+N ++ G TALH + + +++
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 164
Query: 192 KLLLSHGARMDVDSY-GMTP 210
LLL GA ++ +Y G +P
Sbjct: 165 SLLLKCGADVNRVTYQGYSP 184
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 4/131 (3%)
Query: 32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPI 91
F G TPL +AC G V L + C + + G L A+ G+L I
Sbjct: 73 FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS---ILKATNYNGHTCLHLASIHGYLGI 129
Query: 92 VQFLVEHGAKVNSKTRTNS-TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC 150
V+ LV GA VN++ N T L A + +V L++ GAD G++ +
Sbjct: 130 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 189
Query: 151 YKGHYRIVKYL 161
+ RI + L
Sbjct: 190 GRPSTRIQQQL 200
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA V +K + STPL A +GH VVK L+E GAD +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 140 RHGHTCLMIACYKGHYRIVKYL 161
+ G T I+ G+ + + L
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 120 GHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTAL 179
G V+ L+ +GAD +++G T L +A GH +VK LL AD+N + G TA
Sbjct: 17 GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAF 76
Query: 180 HDCAEAGSIEILKLL 194
+ G+ ++ ++L
Sbjct: 77 DISIDNGNEDLAEIL 91
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
L+ A G V+ L++ AD+ K G+T LH A G +E++KLLL GA ++ D
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 205 SYGMTPLLAAAVVGHQHIVEYL 226
+G T + G++ + E L
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV + G+ PL AA GHL +V+ L+E
Sbjct: 10 LLEAARAGQDDEVRILMANG-ADVAA--------KDKNGSTPLHLAARNGHLEVVKLLLE 60
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYL 128
GA VN++ + T + +G+ + + L
Sbjct: 61 AGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADV---EETGAVMFD 70
G+TPL +A RNGH E+V+ L+ E ADV ++ G FD
Sbjct: 39 GSTPLHLAARNGHLEVVKLLL-EAGADVNAQDKFGKTAFD 77
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 179 LHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
L + A AG + +++L+++GA + D G TPL AA GH +V+ L+
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 59
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA V +K + STPL A +GH VVK L+E GAD +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 140 RHGHTCLMIACYKGHYRIVKYL 161
+ G T I+ G+ + + L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
V+ L+ +GAD +++G T L +A GH +VK LL AD+ + G TA +
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Query: 185 AGSIEILKLL 194
G+ ++ ++L
Sbjct: 100 NGNEDLAEIL 109
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
L+ A G V+ L++ AD+ K G+T LH A G +E++KLLL GA + D
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 205 SYGMTPLLAAAVVGHQHIVEYL 226
+G T + G++ + E L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADV---EETGAVMFD 70
G+TPL +A RNGH E+V+ L+ E ADV ++ G FD
Sbjct: 57 GSTPLHLAARNGHLEVVKLLL-EAGADVXAQDKFGKTAFD 95
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 179 LHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
L + A AG + +++L+++GA + D G TPL AA GH +V+ L+
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 77
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 56 ECKADVE---ETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTP 112
EC+ V+ E GA + + G PL A L +VQ L++HGA VN++ + S+
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA 186
Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
L +A G +V+ LV GAD + N H T LM+A + R++ L
Sbjct: 187 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR---RVIDIL 232
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLV----EHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVE 130
+G PL A G+LP V LV + G +++ TPL A VV+ LV
Sbjct: 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67
Query: 131 HGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNA----DMNRKSSKGNTALHDCAEAG 186
GA +RHG T +AC ++ LL A D+ ++ G TALH
Sbjct: 68 AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127
Query: 187 SIEILKLLLSHGARMD-VD-SYGMTPLLAAAVVGHQHIVEYLI--GLNI 231
E ++LLL GA +D VD G +PL+ A +V+ L+ G N+
Sbjct: 128 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 86/208 (41%), Gaps = 11/208 (5%)
Query: 26 MVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAA 85
M T+ G TPL +A G+ V LV ++ + G D PL A
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLV-----NLFQQGGRELDIYNNLRQTPLHLAVI 55
Query: 86 AGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA----DFEVSNRH 141
+V+ LV GA + R T AC ++ L++ A D E N
Sbjct: 56 TTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD 115
Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKLLLSHGAR 200
G T L +A V+ LL AD++ K G + L E S+ +++LLL HGA
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 201 MDVDSY-GMTPLLAAAVVGHQHIVEYLI 227
++ Y G + L +A+ G +V L+
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLV 203
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 92 VQFLVEHGAKVNS-KTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC 150
VQ L+E GA +++ ++ +PL A + +V+ L++HGA+ G + L A
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191
Query: 151 YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
+G +V+ L+ AD + K+ +T L I+IL+
Sbjct: 192 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
+W A G L V+ V G VN PL A G ++++L+ GAD +
Sbjct: 7 MW-ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLS 196
+H T L+ A Y+GH VK LLS AD K G TAL EA + +K LL
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL----EATDNQAIKALLQ 118
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 71 HETVEGA-PPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV 129
+ T+EG PL AA G L I++FL+ GA +N+ + + TPL +A ++GH VK L+
Sbjct: 29 NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL 88
Query: 130 EHGADFEVSNRHGHTCL 146
GAD V G T L
Sbjct: 89 SKGADKTVKGPDGLTAL 105
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
M A G VK ++ D+NR G LH A+ G +EIL+ LL GA ++ D
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
+ +TPLL+A GH V+ L+
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLL 88
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Query: 116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG 175
A +G VK V G D + G L A G I+++LL AD+N
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 176 NTALHDCAEAGSIEILKLLLSHGARMDVDSY-GMTPLLA 213
T L G + +KLLLS GA V G+T L A
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEA 107
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 75 EGAPPL-WCAAAAGHLPIVQFLVEHGAKVNSKTRTNS---TPLRAACFDGHFGVVKYLVE 130
+G PL W + H I FL+ VN + TP AC G+ VVK L +
Sbjct: 35 DGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Query: 131 H--GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI 188
D G TCL +A K + + ++L+ A + K LH A GS+
Sbjct: 94 RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 153
Query: 189 EILKLL--LSHGARMDVDSYGMTPLLAAAVVGH 219
++++LL L A D G TPL A GH
Sbjct: 154 KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 33 GGATPLIMACRNGHKEIVEYLV-KECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPI 91
G TP +AC G+ E+V+ L + K D+ + T +G L A +
Sbjct: 71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI--------TNQGVTCLHLAVGKKWFEV 122
Query: 92 VQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG-ADFEVSNRHGHTCLMIAC 150
QFL+E+GA V K + N PL A G +++ L G + ++ G T L A
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 151 YKGH 154
+GH
Sbjct: 183 AEGH 186
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 19/233 (8%)
Query: 7 DEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGA 66
+E+ Q L H + ++ + G PL + EI +L+ + +
Sbjct: 13 NEFFKVQELL----HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME------NV 62
Query: 67 VMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAK--VNSKTRTNSTPLRAACFDGHFGV 124
+ D+ G P A + G+L +V+ L + K +N T T L A F V
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL-NADMNRKSSKGNTAL-HDC 182
++L+E+GA + ++ L A G ++++ L L + +N + +G T L H
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 183 AEAGSIEILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSR 234
AE + L+ +GA D VD+ G A V ++ + ++ + N+V +
Sbjct: 183 AEGHGDAAVLLVEKYGAEYDLVDNKGAK---AEDVALNEQVKKFFLN-NVVDK 231
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 149 ACYKGHYRIVKYLL-SLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSY- 206
AC + + V+ LL S + + +K G LH + EI LLS +++D Y
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 207 ---GMTPLLAAAVVGHQHIVEYL 226
G TP A VG+ +V+ L
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSL 91
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 75 EGAPPL-WCAAAAGHLPIVQFLVEHGAKVNSKTRTNS---TPLRAACFDGHFGVVKYLVE 130
+G PL W + H I FL+ VN + TP AC G+ VVK L +
Sbjct: 35 DGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Query: 131 H--GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI 188
D G TCL +A K + + ++L+ A + K LH A GS+
Sbjct: 94 RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 153
Query: 189 EILKLL--LSHGARMDVDSYGMTPLLAAAVVGH 219
++++LL L A D G TPL A GH
Sbjct: 154 KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLV-KECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
G TP +AC G+ E+V+ L + K D+ + T +G L A +
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI--------TNQGVTCLHLAVGKKWFEVS 123
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD-FEVSNRHGHTCLMIACY 151
QFL+E+GA V K + N PL A G +++ L G ++ G T L A
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 152 KGH 154
+GH
Sbjct: 184 EGH 186
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 15/206 (7%)
Query: 7 DEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGA 66
+E+ Q L H + ++ + G PL + EI +L+ + +
Sbjct: 13 NEFFKVQELL----HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME------NV 62
Query: 67 VMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAK--VNSKTRTNSTPLRAACFDGHFGV 124
+ D+ G P A + G+L +V+ L + K +N T T L A F V
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL-NADMNRKSSKGNTAL-HDC 182
++L+E+GA + ++ L A G ++++ L L + +N + +G T L H
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 183 AEAGSIEILKLLLSHGARMD-VDSYG 207
AE + L+ +GA D VD+ G
Sbjct: 183 AEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 149 ACYKGHYRIVKYLL-SLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSY- 206
AC + + V+ LL S + + +K G LH + EI LLS +++D Y
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 207 ---GMTPLLAAAVVGHQHIVEYL 226
G TP A VG+ +V+ L
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSL 91
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 75 EGAPPL-WCAAAAGHLPIVQFLVEHGAKVNSKTRTNS---TPLRAACFDGHFGVVKYLVE 130
+G PL W + H I FL+ VN + TP AC G+ VVK L +
Sbjct: 35 DGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Query: 131 H--GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI 188
D G TCL +A K + + ++L+ A + K LH A GS+
Sbjct: 94 RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 153
Query: 189 EILKLL--LSHGARMDVDSYGMTPLLAAAVVGH 219
++++LL L A D G TPL A GH
Sbjct: 154 KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLV-KECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
G TP +AC G+ E+V+ L + K D+ + T +G L A +
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI--------TNQGVTCLHLAVGKKWFEVS 123
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD-FEVSNRHGHTCLMIACY 151
QFL+E+GA V K + N PL A G +++ L G ++ G T L A
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 152 KGH 154
+GH
Sbjct: 184 EGH 186
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 15/206 (7%)
Query: 7 DEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGA 66
+E+ Q L H + ++ + G PL + EI +L+ + +
Sbjct: 13 NEFFKVQELL----HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME------NV 62
Query: 67 VMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAK--VNSKTRTNSTPLRAACFDGHFGV 124
+ D+ G P A + G+L +V+ L + K +N T T L A F V
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL-NADMNRKSSKGNTAL-HDC 182
++L+E+GA + ++ L A G ++++ L L + +N + +G T L H
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 183 AEAGSIEILKLLLSHGARMD-VDSYG 207
AE + L+ +GA D VD+ G
Sbjct: 183 AEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 149 ACYKGHYRIVKYLL-SLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSY- 206
AC + + V+ LL S + + +K G LH + EI LLS +++D Y
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 207 ---GMTPLLAAAVVGHQHIVEYL 226
G TP A VG+ +V+ L
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSL 91
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 110 STPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL-NADM 168
PL A G+ ++ +++ ++ G T L AC+ GH IV+ L + N ++
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 169 NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
N+++ G+TALH A G +I++LLL+ GAR D+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYL-VEHGADFEV 137
PL AA G+L ++ +++ VN + ST L AC GH +V+ L + +
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
N+ G T L A +KG+ IV+ LL+ A + ++ + A A +LK
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLK 190
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA 86
V G+T L AC GHK+IVE L + ++ + + G L AA
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKL--------GDTALHAAAWK 150
Query: 87 GHLPIVQFLVEHGAKVN 103
G+ IVQ L+ GA+ +
Sbjct: 151 GYADIVQLLLAKGARTD 167
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
+W A G L V+ V G VN PL A G ++++L+ GAD +
Sbjct: 12 MW-ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLS 196
+H T L+ A Y+GH VK LLS AD K G TA EA + +K LL
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF----EATDNQAIKALLQ 123
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 71 HETVEGA-PPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV 129
+ T+EG PL AA G L I++FL+ GA +N+ + + TPL +A ++GH VK L+
Sbjct: 34 NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL 93
Query: 130 EHGADFEVSNRHGHT 144
GAD V G T
Sbjct: 94 SKGADKTVKGPDGLT 108
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
M A G VK ++ D+NR G LH A+ G +EIL+ LL GA ++ D
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
+ +TPLL+A GH V+ L+
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLL 93
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 36/88 (40%)
Query: 116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG 175
A +G VK V G D + G L A G I+++LL AD+N
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 176 NTALHDCAEAGSIEILKLLLSHGARMDV 203
T L G + +KLLLS GA V
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGADKTV 101
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA AG V+ L+ +GA VN+K + TPL A +GH +V+ L++ GAD +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 140 RHGHTCLMIACYKGHYRIVKYL 161
+ G T I+ G+ + + L
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 120 GHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTAL 179
G V+ L+ +GAD ++ G+T L +A +GH IV+ LL AD+N + G TA
Sbjct: 13 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAF 72
Query: 180 HDCAEAGSIEILKLL 194
+ G+ ++ ++L
Sbjct: 73 DISIDNGNEDLAEIL 87
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
L+ A G V+ L++ AD+N K G T LH A G +EI+++LL GA ++ D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 205 SYGMTPLLAAAVVGHQHIVEYL 226
+G T + G++ + E L
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
L+ A R G + V L+ ADV + + +G PL AA GHL IV+ L++
Sbjct: 6 LLEAARAGQDDEVRILMANG-ADV--------NAKDKDGYTPLHLAAREGHLEIVEVLLK 56
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYL 128
GA VN++ + T + +G+ + + L
Sbjct: 57 AGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 179 LHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
L + A AG + +++L+++GA ++ D G TPL AA GH IVE L+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 55
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADV---EETGAVMFD 70
G TPL +A R GH EIVE L+K ADV ++ G FD
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFD 73
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 85/199 (42%), Gaps = 11/199 (5%)
Query: 38 LIMACR-NGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLV 96
L +ACR + H E+V + +A + + G L + + + P+VQ L+
Sbjct: 72 LRLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLL 131
Query: 97 EHGA-KVNSKTRTNSTPLRAACF-----DGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC 150
+ G KV+ + R +P+ V L G +++ G T LM+A
Sbjct: 132 DSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAV 191
Query: 151 YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYG 207
G +VK LL+ AD+N + G+TAL E G EI LLL+ + D+ D G
Sbjct: 192 SHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS-CDISLTDRDG 250
Query: 208 MTPLLAAAVVGHQHIVEYL 226
T L+ A G I L
Sbjct: 251 STALMVALDAGQSEIASML 269
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 63 ETGAVMFDHETVEGAPPLWCAAAA-----GHLPIVQFLVEHGAKVNSK-TRTNSTPLRAA 116
++G D + G P+ A A + V L G +N+K ++ T L A
Sbjct: 132 DSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLG-NINAKASQAGQTALMLA 190
Query: 117 CFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL-NADMNRKSSKG 175
G VVK L+ AD V + G T LM AC GH I LL++ + D++ G
Sbjct: 191 VSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDG 250
Query: 176 NTALHDCAEAGSIEILKLLLSHGARMDV 203
+TAL +AG EI +L S RM++
Sbjct: 251 STALMVALDAGQSEIASMLYS---RMNI 275
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G+T L+ AC +GHKEI L+ D+ T +G+ L A AG I
Sbjct: 216 GSTALMCACEHGHKEIAGLLLAVPSCDISLTDR--------DGSTALMVALDAGQSEIAS 267
Query: 94 FL 95
L
Sbjct: 268 ML 269
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 102 VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
VN TPL A G V++L+E GAD + + + L +A G+ IV L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 162 LSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS-YGMTPLLAAAVVGHQ 220
L + D+N G T L ++ ++ LL+ GA + ++ G TP+ A +G++
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 221 HIVEYL 226
+ + +
Sbjct: 149 KVQQVI 154
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 9/137 (6%)
Query: 25 QMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAA 84
+V K G TPLI A G E V +L+ E AD E L A+
Sbjct: 27 NLVNKPDERGFTPLIWASAFGEIETVRFLL-EWGADPHILAK--------ERESALSLAS 77
Query: 85 AAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHT 144
G+ IV L+E +N TPL A H V+ L+ GAD G+T
Sbjct: 78 TGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYT 137
Query: 145 CLMIACYKGHYRIVKYL 161
+ +A G+ ++ + +
Sbjct: 138 PMDLAVALGYRKVQQVI 154
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 178 ALHDCAEAGSIEILKLLLSHGARM--DVDSYGMTPLLAAAVVGHQHIVEYLI 227
++H A G ++ LK L G + D G TPL+ A+ G V +L+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL 56
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 95 LVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH 154
L++ GA N + + ++P+ A G +K LVEHGAD + G + +A +GH
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 155 YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
+V + L+ +D++ + + G T L + G+ ++ +L H
Sbjct: 122 SSVVSF-LAPESDLHHRDASGLTPLELARQRGAQNLMDILQGH 163
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
NR G T L + + G + LL A N + + G + +HD A G ++ LK+L+ HG
Sbjct: 41 NRFGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHG 99
Query: 199 ARMD-VDSYGMTPLLAAAVVGHQHIVEYL 226
A ++ +DS G P+ A GH +V +L
Sbjct: 100 ADVNALDSTGSLPIHLAIREGHSSVVSFL 128
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 72 ETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH 131
+ G P+ AA G L ++ LVEHGA VN+ T S P+ A +GH VV +L
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE 131
Query: 132 GADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
+D + G T L +A +G ++ L
Sbjct: 132 -SDLHHRDASGLTPLELARQRGAQNLMDIL 160
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 96 VEHGAKVNSKTRTNSTPLR---AACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
+ HG +V + N PL + +G F +V+ ++ D + N G T L A
Sbjct: 25 IAHGMRV----KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
GH IVK+L+ ++N S G T LH A ++++ K L+ GA
Sbjct: 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 31/59 (52%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
EG L A AGH IV+FLV+ G VN+ TPL A + V K+LVE GA
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G T L A GH EIV++LV+ V + +G PL CAA+ ++ + +
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQ---------FGVNVNAADSDGWTPLHCAASCNNVQVCK 120
Query: 94 FLVEHGAKVNSKTRTN 109
FLVE GA V + T ++
Sbjct: 121 FLVESGAAVFAMTYSD 136
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 95 LVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH 154
L++ GA N + + ++P+ A G +K LVEHGAD + G + +A +GH
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 155 YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
+V + L+ +D++ + + G T L + G+ ++ +L H
Sbjct: 120 SSVVSF-LAPESDLHHRDASGLTPLELARQRGAQNLMDILQGH 161
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
NR G T L + + G + LL A N + + G + +HD A G ++ LK+L+ HG
Sbjct: 39 NRFGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHG 97
Query: 199 ARMD-VDSYGMTPLLAAAVVGHQHIVEYL 226
A ++ +DS G P+ A GH +V +L
Sbjct: 98 ADVNALDSTGSLPIHLAIREGHSSVVSFL 126
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 72 ETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH 131
+ G P+ AA G L ++ LVEHGA VN+ T S P+ A +GH VV +L
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE 129
Query: 132 GADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
+D + G T L +A +G ++ L
Sbjct: 130 -SDLHHRDASGLTPLELARQRGAQNLMDIL 158
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 102 VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
VN TPL A G V++L+E GAD + + + L +A G+ IV L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 162 LSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS-YGMTPLLAAAVVGHQ 220
L + D+N G T L ++ ++ LL+ GA + ++ G TP+ A +G++
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 221 HIVEYL 226
+ + +
Sbjct: 149 KVQQVI 154
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 9/137 (6%)
Query: 25 QMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAA 84
+V K G TPLI A G E V +L+ E AD E L A+
Sbjct: 27 NLVNKPDERGFTPLIWASAFGEIETVRFLL-EWGADPHILAK--------ERESALSLAS 77
Query: 85 AAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHT 144
G+ IV L+E +N TPL A H V+ L+ GAD G+T
Sbjct: 78 TGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYT 137
Query: 145 CLMIACYKGHYRIVKYL 161
+ +A G+ ++ + +
Sbjct: 138 PMDLAVALGYRKVQQVI 154
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 178 ALHDCAEAGSIEILKLLLSHGARM--DVDSYGMTPLLAAAVVGHQHIVEYLI 227
++H A G ++ LK L G + D G TPL+ A+ G V +L+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL 56
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 7/201 (3%)
Query: 34 GATPLIMA-CRNGHKEIVEYLVKE----CKADVEETGAVMFDHETVEGAPPLWCAAAAGH 88
G TPL++A C G E +E +D GA + + GA L AAA
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSR 69
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSNRHGHTCLM 147
+ L+E A N + TPL AA GV + L+ + A D + G T L+
Sbjct: 70 SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129
Query: 148 IACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSY 206
+A +++ L++ +AD+N G +ALH A +++ +LL +GA D+ ++
Sbjct: 130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189
Query: 207 GMTPLLAAAVVGHQHIVEYLI 227
TPL AA G + L+
Sbjct: 190 EETPLFLAAREGSYETAKVLL 210
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 16 LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE 75
L+AR H+ G TPLI+A R + ++E L+ ADV +
Sbjct: 117 LDARMHD-----------GTTPLILAARLAVEGMLEDLIN-SHADVNAVDDL-------- 156
Query: 76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
G L AAA ++ L+++GA + + TPL A +G + K L++H A+
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 216
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYL 161
++++ IA + H+ IV+ L
Sbjct: 217 DITDHMDRLPRDIAQERMHHDIVRLL 242
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMN-RK 171
L A G V+ L+E GA+ N +G + + G R+ + LL A+ N
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
Query: 172 SSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL---I 227
+ +HD A G ++ L +L GAR+DV D++G P+ A +GH+ + YL
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA 134
Query: 228 GLNIVSRKEKIDALE 242
G S +IDA E
Sbjct: 135 GGTRGSNHARIDAAE 149
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 91 IVQFLVEHGAKVN-SKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
+ + L+ HGA+ N + T + P+ A +G + L GA +V + G + +A
Sbjct: 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118
Query: 150 CYKGHYRIVKYL 161
GH + +YL
Sbjct: 119 EELGHRDVARYL 130
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS 172
L + +G F +V+ ++ D + N G T L A GH IVK+L+ ++N
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 173 SKGNTALHDCAEAGSIEILKLLLSHGA 199
S G T LH A ++++ K L+ GA
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 31/59 (52%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
EG L A AGH IV+FLV+ G VN+ TPL A + V K+LVE GA
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G T L A GH EIV++LV+ V + +G PL CAA+ ++ + +
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQ---------FGVNVNAADSDGWTPLHCAASCNNVQVCK 120
Query: 94 FLVEHGAKVNSKTRTN 109
FLVE GA V + T ++
Sbjct: 121 FLVESGAAVFAMTYSD 136
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 37/84 (44%)
Query: 83 AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
++ G +VQ ++ + T L A GH +VK+LV+ G + ++ G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 143 HTCLMIACYKGHYRIVKYLLSLNA 166
T L A + ++ K+L+ A
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGA 127
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM 201
G T L + G+ I + LL A+ + K GN +HD A AG ++ L+ LL A +
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 202 DV-DSYGMTPLLAAAVVGHQHIVEYLI 227
++ D+ G PL AA GH +VE+L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
G+ I + L+ GA + K RT + + A G ++ L+E AD + + G+ L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 147 MIACYKGHYRIVKYLLSLNA-DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+A +GH R+V++L+ A ++ ++ KG+TA G E++ L+ ++GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 41 ACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGA 100
A R G + ++ L+ E +ADV + E EG PL AA GHL +V+FLV+H A
Sbjct: 77 AARAGFLDTLQTLL-EFQADV--------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 101 -KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
V + T A G VV + +GA
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADV 61
G PL +A + GH +VE+LVK ++V
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS 172
L A G V+ L+E GAD NR G + + G ++ + LL A+ N
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVAELLLLHGAEPNCAD 74
Query: 173 SKGNT-ALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
T +HD A G ++ L +L GAR+DV D++G P+ A GH+ I YL
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 87 GHLPIVQFLVEHGAKVN-SKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTC 145
G + + L+ HGA+ N + T + P+ A +G + L GA +V + G
Sbjct: 55 GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP 114
Query: 146 LMIACYKGHYRIVKYLLSLNAD 167
+ +A +GH I +YL + D
Sbjct: 115 VDLAEEQGHRDIARYLHAATGD 136
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
G+ I + L+ GA + K RT + A G ++ L+E AD + + G+ L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 147 MIACYKGHYRIVKYLLSLNA-DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+A +GH R+V++L+ A ++ ++ KG+TA G E++ L+ ++GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM 201
G T L + G+ I + LL A+ + K G +HD A AG ++ L+ LL A +
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 202 DV-DSYGMTPLLAAAVVGHQHIVEYLI 227
++ D+ G PL AA GH +VE+L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 41 ACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGA 100
A R G + ++ L+ E +ADV + E EG PL AA GHL +V+FLV+H A
Sbjct: 77 AARAGQLDTLQTLL-EFQADV--------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 101 -KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
V + T A G VV + +GA
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADV 61
G PL +A + GH +VE+LVK ++V
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
G+ I + L+ GA + K RT + A G ++ L+E+ AD + + G+ L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 147 MIACYKGHYRIVKYLLSLNA-DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+A +GH R+V++L+ A ++ ++ KG+TA G E++ L+ ++GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM 201
G T L + G+ I + LL A+ + K G +HD A AG ++ L+ LL + A +
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 202 DV-DSYGMTPLLAAAVVGHQHIVEYLI 227
++ D+ G PL AA GH +VE+L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 83 AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSNRH 141
AA AG L +Q L+E+ A VN + + PL A +GH VV++LV+H A + N
Sbjct: 77 AARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 142 GHTCLMIACYKGHYRIVKYL 161
G T +A G +V +
Sbjct: 137 GDTACDLARLYGRNEVVSLM 156
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 41 ACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGA 100
A R G + ++ L+ E +ADV + E EG PL AA GHL +V+FLV+H A
Sbjct: 77 AARAGFLDTLQTLL-ENQADV--------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 101 -KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
V + T A G VV + +GA
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADV 61
G PL +A + GH +VE+LVK ++V
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMN-RK 171
L A G V+ L+E GA N +G + + G R+ + LL A+ N
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
Query: 172 SSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL---I 227
+ +HD A G ++ L +L GAR+DV D++G P+ A +GH+ + YL
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA 134
Query: 228 GLNIVSRKEKIDALE 242
G S +IDA E
Sbjct: 135 GGTRGSNHARIDAAE 149
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 91 IVQFLVEHGAKVN-SKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
+ + L+ HGA+ N + T + P+ A +G + L GA +V + G + +A
Sbjct: 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118
Query: 150 CYKGHYRIVKYL 161
GH + +YL
Sbjct: 119 EELGHRDVARYL 130
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
G+ I + L+ GA + K RT + A G ++ L+E AD + + G+ L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 147 MIACYKGHYRIVKYLLSLNA-DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+A +GH R+V++L+ A ++ ++ KG+TA G E++ L+ ++GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM 201
G T L + G+ I + LL A+ + K G +HD A AG ++ L+ LL A +
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 202 DV-DSYGMTPLLAAAVVGHQHIVEYLI 227
++ D+ G PL AA GH +VE+L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 41 ACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGA 100
A R G + ++ L+ E +ADV + E EG PL AA GHL +V+FLV+H A
Sbjct: 77 AARAGFLDTLQTLL-EFQADV--------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 101 -KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
V + T A G VV + +GA
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADV 61
G PL +A + GH +VE+LVK ++V
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
G+ I + L+ GA + K RT + A G ++ L+E AD + + G+ L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 147 MIACYKGHYRIVKYLLSLNA-DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+A +GH R+V++L+ A ++ ++ KG+TA G E++ L+ ++GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM 201
G T L + G+ I + LL A+ + K G +HD A AG ++ L+ LL A +
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 202 DV-DSYGMTPLLAAAVVGHQHIVEYLI 227
++ D+ G PL AA GH +VE+L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 41 ACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGA 100
A R G + ++ L+ E +ADV + E EG PL AA GHL +V+FLV+H A
Sbjct: 77 AARAGFLDTLQTLL-EFQADV--------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 101 -KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
V + T A G VV + +GA
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADV 61
G PL +A + GH +VE+LVK ++V
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 7/201 (3%)
Query: 34 GATPLIMA-CRNGHKEIVEYLVKE----CKADVEETGAVMFDHETVEGAPPLWCAAAAGH 88
G TPL++A C G E +E +D GA + + G L AA
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 69
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSNRHGHTCLM 147
+ L+E A N + TPL AA GV + L+ + A D + G T L+
Sbjct: 70 SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129
Query: 148 IACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSY 206
+A +++ L++ +AD+N G +ALH A +++ +LL +GA D+ ++
Sbjct: 130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189
Query: 207 GMTPLLAAAVVGHQHIVEYLI 227
TPL AA G + L+
Sbjct: 190 EETPLFLAAREGSYETAKVLL 210
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 16 LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE 75
L+AR H+ G TPLI+A R + ++E L+ ADV +
Sbjct: 117 LDARMHD-----------GTTPLILAARLAVEGMLEDLIN-SHADVNAVDDL-------- 156
Query: 76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
G L AAA ++ L+++GA + + TPL A +G + K L++H A+
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 216
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYL 161
++++ IA + H+ IV+ L
Sbjct: 217 DITDHMDRLPRDIAQERMHHDIVRLL 242
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 7/201 (3%)
Query: 34 GATPLIMA-CRNGHKEIVEYLVKE----CKADVEETGAVMFDHETVEGAPPLWCAAAAGH 88
G TPL++A C G E +E +D GA + + G L AA
Sbjct: 11 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 70
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSNRHGHTCLM 147
+ L+E A N + TPL AA GV + L+ + A D + G T L+
Sbjct: 71 SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 130
Query: 148 IACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSY 206
+A +++ L++ +AD+N G +ALH A +++ +LL +GA D+ ++
Sbjct: 131 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 190
Query: 207 GMTPLLAAAVVGHQHIVEYLI 227
TPL AA G + L+
Sbjct: 191 EETPLFLAAREGSYETAKVLL 211
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 20/150 (13%)
Query: 16 LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE 75
L+AR H+ G TPLI+A R + ++E L+ ADV +
Sbjct: 118 LDARMHD-----------GTTPLILAARLAVEGMLEDLIN-SHADVNAVDDL-------- 157
Query: 76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
G L AAA ++ L+++GA + + TPL A +G + K L++H A+
Sbjct: 158 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 217
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLN 165
++++ IA + H+ IV+ L N
Sbjct: 218 DITDHMDRLPRDIAQERMHHDIVRLLDEYN 247
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 157 IVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAA 215
IV +L+ + ++++++ KG+TALH C + E LKLLL A +++ + G TPL A
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Query: 216 VVGHQHIVEYL 226
+ H+H E L
Sbjct: 247 RLKHEHCEELL 257
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
+ A PL A AA L +FL+++GA VN PL A GH G+ ++ GAD
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYL 161
+ G L IA + IV L
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLL 320
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 85 AAGHLPIVQFLVE---HGAKVN--SKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
A+GH P + + + HGA VN + + N+TPL A ++L+++GA+ ++
Sbjct: 206 ASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD 265
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
G L A GH + L AD+ + S+G L E + +I+ LL
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 3/117 (2%)
Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSN--RHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
RA+ + + HGAD N + T L+ A ++LL A++N+
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
S G LH G + L L GA + DS G PL A + IV L
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
+ A PL A AA L +FL+++GA VN PL A GH G+ ++ GAD
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYL 161
+ G L IA + IV L
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLL 320
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 85 AAGHLPIVQFLVE---HGAKVN--SKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
A+GH P + + + HGA VN + + N+TPL A ++L+++GA+ ++
Sbjct: 206 ASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD 265
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
G L A GH + L AD+ + S+G L E + +I+ LL
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 3/117 (2%)
Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSN--RHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
RA+ + + HGAD N + T L+ A ++LL A++N+
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
S G LH G + L L GA + DS G PL A + IV L
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
+ A PL A AA L +FL+++GA VN PL A GH G+ ++ GAD
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYL 161
+ G L IA + IV L
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLL 320
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 85 AAGHLPIVQFLVE---HGAKVN--SKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
A+GH P + + + HGA VN + + N+TPL A ++L+++GA+ ++
Sbjct: 206 ASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD 265
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
G L A GH + L AD+ + S+G L E + +I+ LL
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 3/117 (2%)
Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSN--RHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
RA+ + + HGAD N + T L+ A ++LL A++N+
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
S G LH G + L L GA + DS G PL A + IV L
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKL 193
E N GHT L +A +V+ L AD+N+ G T LH EA + +L+L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 194 LLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
LL GA YG L +A++ I+ L+
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 17 EARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEG 76
E R + + + G TPL +A + E+V L + GA + E G
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL--------RDAGADLNKPEPTCG 192
Query: 77 APPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
PL A A +++ L++ GA ++ TPL +A + + + L HGA
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 46/119 (38%), Gaps = 4/119 (3%)
Query: 68 MFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAK---VNSKTRTNSTPLRAACFDGHFGV 124
+F + T +G L A H P + FL+ A ++ + T L A G
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGN-TALHDC 182
V+ L GA V+ R GHT L +AC + LL R +S T DC
Sbjct: 61 VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRH-GHTCLMIACYKGHYRIVKYLLSLNADMN 169
TPL A +V+ L + GAD G T L +A +++ LL AD
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219
Query: 170 RKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+ G T L + + +LL +HGA
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGA 249
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKL 193
E N GHT L +A +V+ L AD+N+ G T LH EA + +L+L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 194 LLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
LL GA YG L +A++ I+ L+
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 17 EARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEG 76
E R + + + G TPL +A + E+V L + GA + E G
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL--------RDAGADLNKPEPTCG 192
Query: 77 APPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
PL A A +++ L++ GA ++ TPL +A + + + L HGA
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 46/119 (38%), Gaps = 4/119 (3%)
Query: 68 MFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAK---VNSKTRTNSTPLRAACFDGHFGV 124
+F + T +G L A H P + FL+ A ++ + T L A G
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGN-TALHDC 182
V+ L GA V+ R GHT L +AC + LL R +S T DC
Sbjct: 61 VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRH-GHTCLMIACYKGHYRIVKYLLSLNADMN 169
TPL A +V+ L + GAD G T L +A +++ LL AD
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219
Query: 170 RKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+ G T L + + +LL +HGA
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGA 249
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 2/165 (1%)
Query: 65 GAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGV 124
GA + + G L AA + L+E A N + TPL AA GV
Sbjct: 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 73
Query: 125 VKYLVEHGA-DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCA 183
+ L+ + A D + G T L++A +++ L++ +AD+N G +ALH A
Sbjct: 74 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 133
Query: 184 EAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
+++ +LL +GA D+ ++ TPL AA G + L+
Sbjct: 134 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 178
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 20/150 (13%)
Query: 16 LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE 75
L+AR H+ G TPLI+A R + ++E L+ ADV +
Sbjct: 85 LDARMHD-----------GTTPLILAARLAVEGMLEDLIN-SHADVNAVDDL-------- 124
Query: 76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
G L AAA ++ L+++GA + + TPL A +G + K L++H A+
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 184
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLN 165
++++ IA + H+ IV+ L N
Sbjct: 185 DITDHMDRLPRDIAQERMHHDIVRLLDEYN 214
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%)
Query: 116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG 175
A G VV+ V+ D N G T L A +Y IV +L++ A++N S G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 176 NTALHDCAEAGSIEILKLLLSHGA 199
T LH A I L+ HGA
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGA 111
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 53/152 (34%), Gaps = 15/152 (9%)
Query: 36 TPLIM---ACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
PL++ A G E+V+ VKE EG L A + IV
Sbjct: 20 NPLVLLLDAALTGELEVVQQAVKEMNDP---------SQPNEEGITALHNAICGANYSIV 70
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC-- 150
FL+ GA VNS TPL A + LV+HGA + C
Sbjct: 71 DFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDP 130
Query: 151 -YKGHYRIVKYLLSLNADMNRKSSKGNTALHD 181
+G+ YL + M +S AL D
Sbjct: 131 YREGYADCATYLADVEQSMGLMNSGAVYALWD 162
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 16 LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE 75
L+AR H+ G TPLI+A R + ++E L+ ADV +
Sbjct: 8 LDARMHD-----------GTTPLILAARLALEGMLEDLIN-SHADVNAVDDL-------- 47
Query: 76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
G L AAA ++ L+++GA + + TPL A +G + K L++H A+
Sbjct: 48 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANR 107
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYL 161
++++ IA + H+ IV+ L
Sbjct: 108 DITDHMDRLPRDIAQERMHHDIVRLL 133
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%)
Query: 66 AVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVV 125
A D +G PL AA +++ L+ A VN+ + L A +
Sbjct: 5 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 64
Query: 126 KYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLS 163
L+++GA+ ++ N T L +A +G Y K LL
Sbjct: 65 VVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLD 102
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 128 LVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS 187
L D + G T L++A +++ L++ +AD+N G +ALH A +
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 188 IEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
++ +LL +GA D+ ++ TPL AA G + L+
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLL 101
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 16 LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE 75
L+AR H+ G TPLI+A R + ++E L+ ADV +
Sbjct: 82 LDARMHD-----------GTTPLILAARLALEGMLEDLIN-SHADVNAVDDL-------- 121
Query: 76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
G L AAA ++ L+++GA + + TPL A +G + K L++H A+
Sbjct: 122 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANR 181
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYL 161
++++ IA + H+ IV+ L
Sbjct: 182 DITDHMDRLPRDIAQERMHHDIVRLL 207
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 2/165 (1%)
Query: 65 GAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGV 124
GA + + G L AA + L+E A + TPL AA GV
Sbjct: 11 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGV 70
Query: 125 VKYLVEHGA-DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCA 183
+ L+ + A D + G T L++A +++ L++ +AD+N G +ALH A
Sbjct: 71 FQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAA 130
Query: 184 EAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
+++ +LL +GA D+ ++ TPL AA G + L+
Sbjct: 131 AVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLL 175
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 54/137 (39%), Gaps = 34/137 (24%)
Query: 125 VKYLVEHGADFEVSNR--------------HGHTCLMIACYKGHYRIVKYLLS---LNAD 167
V+ LV GAD R G L +A IV YL AD
Sbjct: 107 VELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVNYLTENPHKKAD 166
Query: 168 MNRKSSKGNTALH------DCAEAGSIEILK---LLLSHGARMDVDSY--------GMTP 210
M R+ S+GNT LH D + + K LLL AR+ DS G++P
Sbjct: 167 MRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSP 226
Query: 211 LLAAAVVGHQHIVEYLI 227
L+ AA G I +++I
Sbjct: 227 LMMAAKTGKIGIFQHII 243
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 15/68 (22%)
Query: 174 KGNTALHDCAEAGSIEILKLLLSHGARMDVDS---------------YGMTPLLAAAVVG 218
+G TALH E ++LL++ GA + + +G PL AA
Sbjct: 90 RGQTALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 149
Query: 219 HQHIVEYL 226
HIV YL
Sbjct: 150 QPHIVNYL 157
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 72/195 (36%), Gaps = 45/195 (23%)
Query: 78 PPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGV-----------VK 126
P +AG + L++ K + ++P R + G + V+
Sbjct: 51 PKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVE 110
Query: 127 YLVEHGADFEVSNR--------------HGHTCLMIACYKGHYRIVKYLLS---LNADMN 169
LVE GAD R G L +A IV YL AD+
Sbjct: 111 LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLR 170
Query: 170 RKSSKGNTALH------DCAEAGSIEILK---LLLSHGARMDVDSY--------GMTPLL 212
R+ S+GNT LH D + + K LLL A++ D+ G++PL+
Sbjct: 171 RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLM 230
Query: 213 AAAVVGHQHIVEYLI 227
AA G I +++I
Sbjct: 231 MAAKTGKIGIFQHII 245
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
TP A + L+E D + + +G T L+ G + V+ L AD++
Sbjct: 47 TPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 171 KSSKGN-TALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
+ +G TALH A E+++ L+ GA ++V D G+T L
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKAD-VEETG--AVMFDHETVEGAPPLWCAAAAGHLPIV 92
TP A R ++ + L+++ D V+E G A++F A G V
Sbjct: 47 TPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLF-------------VAGLGSDKCV 93
Query: 93 QFLVEHGAKVNSKT-RTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
+ L E GA ++ + R T L A VV+ LVE GAD EV + G T L +A
Sbjct: 94 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
TP A + L+E D + + +G T L+ G + V+ L AD++
Sbjct: 46 TPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 171 KSSKGN-TALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
+ +G TALH A E+++ L+ GA ++V D G+T L
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKAD-VEETG--AVMFDHETVEGAPPLWCAAAAGHLPIV 92
TP A R ++ + L+++ D V+E G A++F A G V
Sbjct: 46 TPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLF-------------VAGLGSDKCV 92
Query: 93 QFLVEHGAKVNSKT-RTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
+ L E GA ++ + R T L A VV+ LVE GAD EV + G T L +A
Sbjct: 93 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 45/224 (20%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
+PL++A + + + L+K +V + GA+ G L AA +L L
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAM--------GETALHIAALYDNLEAAMVL 56
Query: 96 VEHGAKV-----NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNR---------- 140
+E ++ S+ T L A + + +V+ L+ GA VS R
Sbjct: 57 MEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGAS--VSARATGSVFHYRP 114
Query: 141 -----HGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH----DCAEAGSIEIL 191
+G L A G IV+ L+ AD+ + S GNT LH + + ++
Sbjct: 115 HNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMY 174
Query: 192 KLLLSHGA-------RMDVDSYGMTPLLAAAVVGH----QHIVE 224
LLLS+ + ++ G+TP A V G+ QH+++
Sbjct: 175 NLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 15 FLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLV-KECKADVEETGAVMF--DH 71
+EA + +T + G T L +A N + +V L+ + TG+V H
Sbjct: 56 LMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPH 115
Query: 72 ETVE-GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPL 113
+ G PL AA G IV+ L+EHGA + ++ +T L
Sbjct: 116 NLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 28/157 (17%)
Query: 32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAP-------PLWCAA 84
+ G T L +A + +V LV E ADV+ F +T +G P PL AA
Sbjct: 99 YKGQTALHIAIERRNXTLVTLLV-ENGADVQAAANGDFFKKT-KGRPGFYFGELPLSLAA 156
Query: 85 AAGHLPIVQFLVEHG---AKVNSKTRTNSTPLRA--ACFDGHFGVVKYLVEH-------G 132
L IV+FL+++ A ++++ +T L A D K++ G
Sbjct: 157 CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSXYNEILILG 216
Query: 133 ADF-------EVSNRHGHTCLMIACYKGHYRIVKYLL 162
A E++NR G T L +A G ++ Y+L
Sbjct: 217 AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 34/142 (23%)
Query: 124 VVKYLVEHGADFEVSNR--------------HGHTCLMIACYKGHYRIVKYLLSLN---A 166
+V LVE+GAD + + G L +A IVK+LL + A
Sbjct: 116 LVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA 175
Query: 167 DMNRKSSKGNTALHDCAEAG--SIEILKLLLSH-------GARMD--------VDSYGMT 209
D++ + S GNT LH E +++ K + S GA++ + G+T
Sbjct: 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLT 235
Query: 210 PLLAAAVVGHQHIVEYLIGLNI 231
PL AA G ++ Y++ I
Sbjct: 236 PLALAASSGKIGVLAYILQREI 257
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 29/115 (25%)
Query: 142 GHTCLMIA---CYKGHYRIVKYLLSL-----------NADMNRKSSKGNTALHDCAEAGS 187
G TCL+ A + G + LL + NA KG TALH E +
Sbjct: 54 GKTCLLKAXLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN 113
Query: 188 IEILKLLLSHGARMDVDS---------------YGMTPLLAAAVVGHQHIVEYLI 227
++ LL+ +GA + + +G PL AA IV++L+
Sbjct: 114 XTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 109 NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL 164
N + A G V+ L+E G + NR G T L +AC G KYL S+
Sbjct: 20 NXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV 75
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 58/157 (36%), Gaps = 28/157 (17%)
Query: 83 AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEV-SNRH 141
AA G V+ L+E G + R T L AC G KYL G EV S H
Sbjct: 27 AARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG---EVHSLWH 83
Query: 142 GHTCLMIACYKGHYRIVKYLLS------------LNADMNR---------KSSKGNTALH 180
G + +A +V L+ LN R K KG TALH
Sbjct: 84 GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALH 143
Query: 181 DCAEAGS--IEILKLLLSHGARMDV-DSYGMTPLLAA 214
C G +E +K+L+ GA D TPL A
Sbjct: 144 WCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRA 180
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYG----MTPL 211
+IVK LL D ++ KGNTAL+ ++G+ + +KL + R+ YG T
Sbjct: 76 KIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXF--YGKTGWKTSF 133
Query: 212 LAAAVVGHQHIVEYLIG 228
A + IV Y +
Sbjct: 134 YHAVXLNDVSIVSYFLS 150
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 84 AAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGH 143
A LP+V F++++G +++K +T L A +K L++ A N G
Sbjct: 182 ANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE 241
Query: 144 TCLMIACYKGH 154
T L IA K H
Sbjct: 242 TALDIARKKHH 252
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 157 IVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM-DVDSYGMTPLLAAA 215
+V +++ ++ K++ GNTALH A + LKLLL A + V+ G T L A
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
Query: 216 VVGHQHIVEYL 226
H+ E L
Sbjct: 249 KKHHKECEELL 259
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 84 AAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGH 143
A LP+V F++++G +++K +T L A +K L++ A N G
Sbjct: 201 ANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE 260
Query: 144 TCLMIACYKGHYRIVKYLL 162
T L IA K H++ + LL
Sbjct: 261 TALDIA-RKKHHKECEELL 278
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 157 IVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM-DVDSYGMTPLLAAA 215
+V +++ ++ K++ GNTALH A + LKLLL A + V+ G T L A
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 267
Query: 216 VVGHQHIVEYL 226
H+ E L
Sbjct: 268 KKHHKECEELL 278
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
Query: 164 LNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS--------------YGMT 209
+NA + +G++ALH E S++ +KLL+ +GA + + + +G
Sbjct: 92 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL 151
Query: 210 PLLAAAVVGHQHIVEYLI 227
PL AA +V YL+
Sbjct: 152 PLSLAACTKQWDVVTYLL 169
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Query: 164 LNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS--------------YGMT 209
+NA +G++ALH E S++ +KLL+ +GA + + +G
Sbjct: 84 VNAQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGEL 143
Query: 210 PLLAAAVVGHQHIVEYLI 227
PL AA +V YL+
Sbjct: 144 PLSLAACTKQWDVVSYLL 161
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
Query: 164 LNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS--------------YGMT 209
+NA + +G++ALH E S++ +KLL+ +GA + + + +G
Sbjct: 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL 138
Query: 210 PLLAAAVVGHQHIVEYLI 227
PL AA +V YL+
Sbjct: 139 PLSLAACTKQWDVVTYLL 156
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
+G PP LP++ +++ G K SK+ TN + + F +FG+ +V HG
Sbjct: 8 KGRPP-----GPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHG 60
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 97 EHGAKVNSKTRTNSTP-LRA-------ACFDGHFGVVKYLVEHGADFEVSNR 140
EHGA + + T P +RA C D G + Y +EHG D+ + R
Sbjct: 231 EHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGR 282
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 97 EHGAKVNSKTRTNSTP-LRA-------ACFDGHFGVVKYLVEHGADFEVSNR 140
EHGA + + T P +RA C D G + Y +EHG D+ + R
Sbjct: 223 EHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGR 274
>pdb|3GWC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Synthase X Bound To Fdump And Fad
pdb|3GWC|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Synthase X Bound To Fdump And Fad
pdb|3GWC|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Synthase X Bound To Fdump And Fad
pdb|3GWC|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Synthase X Bound To Fdump And Fad
pdb|3GWC|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Synthase X Bound To Fdump And Fad
pdb|3GWC|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Synthase X Bound To Fdump And Fad
pdb|3GWC|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Synthase X Bound To Fdump And Fad
pdb|3GWC|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Synthase X Bound To Fdump And Fad
pdb|3HZG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Synthase X Bound With Fad
pdb|3HZG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Synthase X Bound With Fad
pdb|3HZG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Synthase X Bound With Fad
pdb|3HZG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Synthase X Bound With Fad
Length = 258
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 77 APP--LWCAAAAGHLPIVQFL----VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKY 127
APP W A G +V+F + +K N KT TN+ LR GHF V+++
Sbjct: 19 APPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIIDVGHFSVLEH 75
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 168 MNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+N + S G+T L+ A G+I I+ LL +GA
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGA 307
>pdb|2AF6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Flavin
Dependent Thymidylate Synthase (Mtb Thyx) In The
Presence Of Co-Factor Fad And Substrate Analog
5-Bromo-2'-Deoxyuridine-5'-Monophosphate (Brdump)
pdb|2AF6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Flavin
Dependent Thymidylate Synthase (Mtb Thyx) In The
Presence Of Co-Factor Fad And Substrate Analog
5-Bromo-2'-Deoxyuridine-5'-Monophosphate (Brdump)
pdb|2AF6|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Flavin
Dependent Thymidylate Synthase (Mtb Thyx) In The
Presence Of Co-Factor Fad And Substrate Analog
5-Bromo-2'-Deoxyuridine-5'-Monophosphate (Brdump)
pdb|2AF6|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Flavin
Dependent Thymidylate Synthase (Mtb Thyx) In The
Presence Of Co-Factor Fad And Substrate Analog
5-Bromo-2'-Deoxyuridine-5'-Monophosphate (Brdump)
pdb|2AF6|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Flavin
Dependent Thymidylate Synthase (Mtb Thyx) In The
Presence Of Co-Factor Fad And Substrate Analog
5-Bromo-2'-Deoxyuridine-5'-Monophosphate (Brdump)
pdb|2AF6|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Flavin
Dependent Thymidylate Synthase (Mtb Thyx) In The
Presence Of Co-Factor Fad And Substrate Analog
5-Bromo-2'-Deoxyuridine-5'-Monophosphate (Brdump)
pdb|2AF6|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Flavin
Dependent Thymidylate Synthase (Mtb Thyx) In The
Presence Of Co-Factor Fad And Substrate Analog
5-Bromo-2'-Deoxyuridine-5'-Monophosphate (Brdump)
pdb|2AF6|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Flavin
Dependent Thymidylate Synthase (Mtb Thyx) In The
Presence Of Co-Factor Fad And Substrate Analog
5-Bromo-2'-Deoxyuridine-5'-Monophosphate (Brdump)
pdb|2GQ2|A Chain A, Mycobacterium Tuberculosis Thyx-Nadp Complex
pdb|2GQ2|B Chain B, Mycobacterium Tuberculosis Thyx-Nadp Complex
pdb|2GQ2|C Chain C, Mycobacterium Tuberculosis Thyx-Nadp Complex
pdb|2GQ2|D Chain D, Mycobacterium Tuberculosis Thyx-Nadp Complex
Length = 258
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 77 APP--LWCAAAAGHLPIVQFL----VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKY 127
APP W A G +V+F + +K N KT TN+ LR GHF V+++
Sbjct: 19 APPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIXDVGHFSVLEH 75
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
LP++ +++ G K SK+ TN + + F +FG+ +V HG
Sbjct: 19 LPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHG 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,371,532
Number of Sequences: 62578
Number of extensions: 285890
Number of successful extensions: 1627
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 500
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)