RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy599
(247 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 124 bits (313), Expect = 3e-36
Identities = 52/126 (41%), Positives = 75/126 (59%)
Query: 70 DHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV 129
+ +G PL AA+ GHL +V+ L+E+GA VN+K TPL A +GH +VK L+
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 130 EHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE 189
E GAD ++ G+T L +A G+ +VK LL AD+N + G T LH A+ G +E
Sbjct: 61 EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120
Query: 190 ILKLLL 195
++KLLL
Sbjct: 121 VVKLLL 126
Score = 123 bits (311), Expect = 7e-36
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 103 NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLL 162
N++ TPL A +GH VVK L+E+GAD + G T L +A GH IVK LL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 163 SLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQH 221
AD+N + GNT LH A G+++++KLLL HGA ++ D G TPL AA GH
Sbjct: 61 EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120
Query: 222 IVEYLI 227
+V+ L+
Sbjct: 121 VVKLLL 126
Score = 112 bits (283), Expect = 9e-32
Identities = 53/129 (41%), Positives = 73/129 (56%), Gaps = 9/129 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A NGH E+V+ L++ ADV +G PL AA GHL IV+
Sbjct: 7 GRTPLHLAASNGHLEVVKLLLENG-ADVNAK--------DNDGRTPLHLAAKNGHLEIVK 57
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+E GA VN++ + +TPL A +G+ VVK L++HGAD ++ G T L +A G
Sbjct: 58 LLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNG 117
Query: 154 HYRIVKYLL 162
H +VK LL
Sbjct: 118 HLEVVKLLL 126
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 96.6 bits (241), Expect = 6e-26
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L AA G+L +V+ L+E GA VN T L A +G+ +VK L+EHGAD +
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRK 171
+ G+T L +A G+ IVK LL AD+N K
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90
Score = 93.5 bits (233), Expect = 1e-24
Identities = 40/87 (45%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS 172
L A +G+ +VK L+E GAD + + T L +A G+ IVK LL AD+N K
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 173 SKGNTALHDCAEAGSIEILKLLLSHGA 199
GNTALH A G++EI+KLLL HGA
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLLEHGA 85
Score = 83.8 bits (208), Expect = 5e-21
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VD 204
L +A G+ +VK LL AD+N + +TALH A G++EI+KLLL HGA ++ D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
G T L AA G+ IV+ L+
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLL 81
Score = 82.7 bits (205), Expect = 2e-20
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 13/103 (12%)
Query: 38 LIMACRNGHKEIVEYLV-KECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLV 96
L +A +NG+ E+V+ L+ K ++ +T L AA G+L IV+ L+
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD------------TALHLAARNGNLEIVKLLL 48
Query: 97 EHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
EHGA VN+K + +T L A +G+ +VK L+EHGAD + +
Sbjct: 49 EHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 56.5 bits (137), Expect = 9e-11
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
T L +A RNG+ EIV+ L+ E ADV + + +G L AA G+L IV+ L
Sbjct: 30 TALHLAARNGNLEIVKLLL-EHGADV--------NAKDKDGNTALHLAARNGNLEIVKLL 80
Query: 96 VEHGAKVNSK 105
+EHGA +N K
Sbjct: 81 LEHGADINLK 90
Score = 35.7 bits (83), Expect = 0.003
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADV 61
G T L +A RNG+ EIV+ L+ E AD+
Sbjct: 61 GNTALHLAARNGNLEIVKLLL-EHGADI 87
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 90.9 bits (226), Expect = 4e-21
Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 30/177 (16%)
Query: 91 IVQFLVEHGAKVNSKTRTNSTPLRAACFDGH-----FGVVKYLVEHGADFEVSNRHGHTC 145
+V+ L+++GA +NS T+ NSTPL + +VK L+E+GA+ + +G T
Sbjct: 50 VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITP 109
Query: 146 LMIACYK--GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI--EILKLLLSHGARM 201
L+ A K Y IV+YLL A++N K+S G LH E+ I +ILKLL+ G +
Sbjct: 110 LLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI 169
Query: 202 DV-----------------DSYGMTPLLAAAVVGHQHIVEYLIGL----NIVSRKEK 237
+ D YG TPL A + V+YL+ L N+V++
Sbjct: 170 NAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGD 226
Score = 78.9 bits (195), Expect = 6e-17
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 32/171 (18%)
Query: 34 GATPL---IMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH-- 88
G TPL I N IVEYL + GA + +G L +
Sbjct: 106 GITPLLYAISKKSN-SYSIVEYL--------LDNGANVNIK-NSDGENLLHLYLESNKID 155
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMI 148
L I++ L++ G +N+K R V YL+ +G + + +G T L
Sbjct: 156 LKILKLLIDKGVDINAKNR-----------------VNYLLSYGVPINIKDVYGFTPLHY 198
Query: 149 ACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
A Y + VKYLL L A+ N + G+T LH + EI KLLL++G
Sbjct: 199 AVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249
Score = 35.8 bits (83), Expect = 0.016
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEV- 137
PL A + V++L++ GA N + TPL A + + + K L+ +G +
Sbjct: 195 PLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTI 254
Query: 138 -------SNRHGHTCLMIACYKGHYRIVKYLLSLNADM--NRK 171
++ +T I K + + Y+ L+ NRK
Sbjct: 255 IETLLYFKDKDLNTITKIKMLK---KSIMYMFLLDPGFYKNRK 294
Score = 27.3 bits (61), Expect = 7.8
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 43/117 (36%)
Query: 157 IVKYLLSLNADMNRKSSKGNTA-LHDCAEAGSIEILKLLLSHGARMDV------------ 203
+KY++ + D+N S K L+ EA +I+++K+LL +GA ++
Sbjct: 17 NIKYIIMED-DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYL 75
Query: 204 ---------------------------DSYGMTPLLAAAV--VGHQHIVEYLIGLNI 231
D+ G+TPLL A IVEYL+
Sbjct: 76 SNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGA 132
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 82.2 bits (202), Expect = 8e-19
Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH-----YRIVKYLLSLN 165
PL +A G +VK L+ GAD + G T L +A G+ + K LL
Sbjct: 75 LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG 134
Query: 166 ADM---NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQH 221
AD+ N + GNT LH A G +I++LLL GA + +SYG+T L AA G
Sbjct: 135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIE 194
Query: 222 IVEYLI 227
+V+ L+
Sbjct: 195 LVKLLL 200
Score = 79.9 bits (196), Expect = 5e-18
Identities = 53/149 (35%), Positives = 75/149 (50%), Gaps = 8/149 (5%)
Query: 82 CAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFG-----VVKYLVEHGADFE 136
AA+ G IV+ L+ GA VN+K TPL A +G+ V K L+E GAD +
Sbjct: 79 SAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD 138
Query: 137 VSNRH---GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL 193
V+N G+T L A G IV+ LL AD N ++S G TAL A+ G IE++KL
Sbjct: 139 VNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKL 198
Query: 194 LLSHGARMDVDSYGMTPLLAAAVVGHQHI 222
LL G + + + + + A V +
Sbjct: 199 LLDKGLHLSLLKFNLEGVANANVSKRNIL 227
Score = 75.2 bits (184), Expect = 3e-16
Identities = 42/96 (43%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 141 HGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS-----IEILKLLL 195
G L A KG +IVK LL+ AD+N K + G+T LH A G+ IE+ KLLL
Sbjct: 72 DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLL 131
Query: 196 SHGARMDV----DSYGMTPLLAAAVVGHQHIVEYLI 227
GA +DV D G TPL AA+ G IVE L+
Sbjct: 132 EAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLL 167
Score = 71.4 bits (174), Expect = 6e-15
Identities = 49/168 (29%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP--- 90
G PL A G +IV+ L+ ADV +G PL AA G+ P
Sbjct: 73 GRLPLHSAASKGDDKIVKLLL-ASGADVNAK--------DADGDTPLHLAALNGNPPEGN 123
Query: 91 --IVQFLVEHGAKVNSKTRTNS---TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTC 145
+ + L+E GA ++ + TPL A +G +V+ L+E GAD N +G T
Sbjct: 124 IEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTA 183
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL 193
L A G +VK LL ++ K N A IL L
Sbjct: 184 LDPAAKNGRIELVKLLLDKGLHLS--LLKFNLEGVANANVSKRNILNL 229
Score = 37.1 bits (85), Expect = 0.005
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 169 NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQH-----I 222
+ G LH A G +I+KLLL+ GA ++ D+ G TPL AA+ G+ +
Sbjct: 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126
Query: 223 VEYLIGLNIVSR 234
+ L+
Sbjct: 127 AKLLLEAGADLD 138
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 80.4 bits (198), Expect = 2e-17
Identities = 63/216 (29%), Positives = 92/216 (42%), Gaps = 34/216 (15%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
TPLI A R+G +IVE +K AD+ +H + PL A G I++ L
Sbjct: 37 TPLIDAIRSGDAKIVELFIKH-GADI--------NHINTKIPHPLLTAIKIGAHDIIKLL 87
Query: 96 V-----------------------EHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
+ + G VN K T L A G +K L E+G
Sbjct: 88 IDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG 147
Query: 133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
AD + + +G + IA + I+K LL A N K + G + LH+ AE G +K
Sbjct: 148 ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIK 207
Query: 193 LLLSHGARMDVD-SYGMTPLLAAAVVGHQHIVEYLI 227
LL+ HG + G TP L A++ ++ +E LI
Sbjct: 208 LLIDHGNHIMNKCKNGFTP-LHNAIIHNRSAIELLI 242
Score = 73.5 bits (180), Expect = 5e-15
Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 24/177 (13%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
E PL A +G IV+ ++HGA +N PL A G ++K L+++G D
Sbjct: 34 ETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVD 93
Query: 135 FEV-----------------------SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRK 171
+ + T L A KG +K L AD+N +
Sbjct: 94 TSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE 153
Query: 172 SSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
G +H + +I+KLLL GA +V D+ G +PL AA G ++ LI
Sbjct: 154 DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLI 210
Score = 62.7 bits (152), Expect = 2e-11
Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 15/204 (7%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
T L A + G E ++ L + ADV + E G P+ A I++ L
Sbjct: 126 TFLHYAIKKGDLESIKMLFEY-GADV--------NIEDDNGCYPIHIAIKHNFFDIIKLL 176
Query: 96 VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
+E GA N K +PL A G + +K L++HG ++G T L A H
Sbjct: 177 LEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAII--HN 234
Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAE-AGSIEILKLLLSHGARMDV-DSYGMTPL-L 212
R LL NA +N + G+T LH I+I+ +LL H A + + D+ G P+
Sbjct: 235 RSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDT 294
Query: 213 AAAVVGHQHIVEYLIGLNIVSRKE 236
A + +++ +I N V KE
Sbjct: 295 AFKYINKDPVIKDIIA-NAVLIKE 317
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 73.1 bits (180), Expect = 7e-15
Identities = 60/217 (27%), Positives = 92/217 (42%), Gaps = 29/217 (13%)
Query: 34 GATPLIMACRNGHKE-IVEYLVKECKADVEETGAVMFDHETVEGAPPL--WCAAAAGHLP 90
G TPL + N +++ L+K ADV V G PL + + +
Sbjct: 83 GFTPLHLYLYNATTLDVIKLLIK-AGADVNAKDKV--------GRTPLHVYLSGFNINPK 133
Query: 91 IVQFLVEHGAKVNSKTRTNSTPLRAACF----DGHFGVVKYLVEHGAD-FEVSNRHGHTC 145
+++ L+ GA VN+ TPL A + + +++ L++ GAD + V +R +
Sbjct: 134 VIRLLLRKGADVNALDLYGMTPL--AVLLKSRNANVELLRLLIDAGADVYAVDDR-FRSL 190
Query: 146 LMIAC--YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL--LLSHGARM 201
L +K RIV+ L+ D GNT LH A S + + LL G +
Sbjct: 191 LHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISI 250
Query: 202 DV-DSYGMTPLLAAAVVGHQHIVEYLIGL----NIVS 233
+ + YG TPL AAV + LI L N VS
Sbjct: 251 NARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVS 287
Score = 43.5 bits (103), Expect = 5e-05
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 91 IVQFLVEHGAKVNSKTRTNSTPLR--AACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMI 148
IV+ L+ G + +TPL A +V L+ G NR+G T L
Sbjct: 204 IVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHY 263
Query: 149 ACYKGHYRIVKYLLSLNADMNRKSSKGNTAL 179
A + R + L++L AD+N SS GNT L
Sbjct: 264 AAVFNNPRACRRLIALGADINAVSSDGNTPL 294
Score = 42.7 bits (101), Expect = 1e-04
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 90 PIVQFLVEHGAKVNSKTRTNSTPL-RAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMI 148
+V L+ G +N++ R TPL AA F+ + L+ GAD + G+T L +
Sbjct: 238 SLVLPLLIAGISINARNRYGQTPLHYAAVFNNP-RACRRLIALGADINAVSSDGNTPLSL 296
Query: 149 ACYKGHYRIVKYLLSLN 165
+ R V+ L+ N
Sbjct: 297 MVRNNNGRAVRAALAKN 313
Score = 36.9 bits (86), Expect = 0.007
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 157 IVKYLLSLNADMNRKSSKGNTALH---DCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
V+ LL+ AD+N + G T LH + +I++LLL GA ++ + G TPL
Sbjct: 29 EVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPL 87
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 71.1 bits (174), Expect = 3e-14
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 91 IVQFLVEHGAKVNSKTR-TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
I + L+ +GA +N K R +T L A + + + L+ +GA+ + ++ ++ L A
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHA 208
Query: 150 CYKGHYRIVKYLLSLNADMNRKSSKGNTALH-DCAEAGSIEILKLLLSHGARMDVDSY-- 206
+ IV LL A + + GNT LH +ILKLLL HG ++ SY
Sbjct: 209 VKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYIL 268
Query: 207 GMTPL 211
G+T L
Sbjct: 269 GLTAL 273
Score = 71.1 bits (174), Expect = 4e-14
Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
Query: 76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
G L A + + L+ +GA VN +TN++PL A + +V L+E+GA
Sbjct: 168 GNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST 227
Query: 136 EVSNRHGHTCLMIAC-YKGHYRIVKYLLSLNADMNRKSS-KGNTALHDCAEAGSIEILKL 193
+ ++ G+T L I+ Y Y I+K LL D+N KS G TALH + S LKL
Sbjct: 228 DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIK--SERKLKL 285
Query: 194 LLSHGARMD-VDSYGMTPLLAA 214
LL +GA ++ ++SY +TPL +A
Sbjct: 286 LLEYGADINSLNSYKLTPLSSA 307
Score = 47.6 bits (113), Expect = 3e-06
Identities = 48/182 (26%), Positives = 71/182 (39%), Gaps = 33/182 (18%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
PL A A +L +V+ L+ G VN + TPL C + + +K ++ V
Sbjct: 40 PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVF 99
Query: 139 NRHGH-------------TCLMIACYKGHY------------------RIVKYLLSLNAD 167
++ YK I K LLS AD
Sbjct: 100 YTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD 159
Query: 168 MNRKS-SKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEY 225
+N K KGNTALH E + +LLLS+GA +++ D +PL A ++ IV
Sbjct: 160 INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHI 219
Query: 226 LI 227
L+
Sbjct: 220 LL 221
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 55.3 bits (134), Expect = 1e-10
Identities = 28/54 (51%), Positives = 33/54 (61%)
Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
G T L A G +VKYLL D+NR GNTALH AE G++E+LKLLL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 54.9 bits (133), Expect = 1e-10
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 109 NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLL 162
T L A G +VKYL+E G D ++ G+T L IA G+ ++K LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 49.9 bits (120), Expect = 1e-08
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 175 GNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
G TALH A +G +E++K LL G ++ D G T L AA G+ +++ L+
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 48.4 bits (116), Expect = 4e-08
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV 129
L AA +G L +V++L+E G +N +T L A +G+ V+K L+
Sbjct: 4 ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 38.0 bits (89), Expect = 2e-04
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
T L A +G E+V+YL+++ D+ T +G L AA G+L +++ L
Sbjct: 3 TALHKAAISGRLELVKYLLEK-GVDINRTDE--------DGNTALHIAAENGNLEVLKLL 53
Query: 96 V 96
+
Sbjct: 54 L 54
Score = 31.4 bits (72), Expect = 0.043
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 34 GATPLIMACRNGHKEIVEYLV 54
G T L +A NG+ E+++ L+
Sbjct: 34 GNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 59.7 bits (144), Expect = 2e-10
Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 14/198 (7%)
Query: 34 GATPLIMACRNGH-KEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
G TPL + +NG+ E + L+ ADV + + P + + IV
Sbjct: 307 GETPLYLMAKNGYDTENIRTLIML-GADVNAA-------DRLYITPLHQASTLDRNKDIV 358
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
L+E GA VN++ + TP+ A + ++ L+++GAD E ++ T L A
Sbjct: 359 ITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCG 418
Query: 153 GH-YRIVKYLLSLNADMNRKSSKGNTALH-DCAEAGSIEILKLLLSHGARMD-VDSYGMT 209
+ Y VK L+ A++N K+ +T LH C + ++++++LL +GA ++ ++
Sbjct: 419 TNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQY 478
Query: 210 PLLAAAVVGHQHIVEYLI 227
PLL A + + IV L+
Sbjct: 479 PLLIA--LEYHGIVNILL 494
Score = 40.8 bits (95), Expect = 4e-04
Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 35/191 (18%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFE-- 136
P+ AA G+ +V L+ +GA VN + + L A + +K ++++ ++
Sbjct: 181 PIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKN 240
Query: 137 -------VSNRHGHTCLM----------IACYKG---HY--------RIVKYLLSLNADM 168
+ N T L+ I K H+ R+V LL AD+
Sbjct: 241 DLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV 300
Query: 169 NRKSSKGNTALHDCAEAG-SIEILKLLLSHGARMD-VDSYGMTPLLAAAVVG-HQHIVEY 225
N K+ KG T L+ A+ G E ++ L+ GA ++ D +TPL A+ + ++ IV
Sbjct: 301 NAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVIT 360
Query: 226 L--IGLNIVSR 234
L +G N+ +R
Sbjct: 361 LLELGANVNAR 371
Score = 38.9 bits (90), Expect = 0.002
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMI 148
L I + L+E GA VN+K TP+ A G+ +V L+ +GAD + + L
Sbjct: 158 LLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLEC 217
Query: 149 ACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYG 207
A + +K ++ +++N K + +L +E LL G ++ +D
Sbjct: 218 AVDSKNIDTIKAIIDNRSNIN----KNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCK 273
Query: 208 MTPL 211
TPL
Sbjct: 274 NTPL 277
Score = 35.8 bits (82), Expect = 0.016
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAA 215
I + LL AD+N K T +H AE G+ +++ LLLS+GA +++ + +L A
Sbjct: 159 LIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECA 218
Query: 216 V 216
V
Sbjct: 219 V 219
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 58.1 bits (140), Expect = 7e-10
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 11/169 (6%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
+G PL A L I++ L+ GA + +PL A G ++ L++H A
Sbjct: 101 DGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC 160
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGN-TALHDCAEAGSIEILKL 193
++ + G T L+IA KG I K LL A+++ G AL E I+I++L
Sbjct: 161 LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRL 220
Query: 194 LLSHGARMDVDSYGMTPLLAAAVVGHQH-IVEYLIGLNIVSRKEKIDAL 241
+ GA D M + G + I++ + + E IDAL
Sbjct: 221 FIKRGA----DCNIMF-----MIEGEECTILDMICNMCTNLESEAIDAL 260
Score = 57.3 bits (138), Expect = 1e-09
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 8/177 (4%)
Query: 72 ETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH 131
E +G P+ A ++ L++HGA + K + L A +G V+ L++
Sbjct: 31 EIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90
Query: 132 G--ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE 189
G AD +V + G T L +A I+K L++ AD + ++ + LH G I+
Sbjct: 91 GKFAD-DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149
Query: 190 ILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI--GLNI--VSRKEKIDAL 241
++LL+ H A +D+ D G TPL+ A G I + L+ G NI + + AL
Sbjct: 150 GIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAAL 206
Score = 35.4 bits (81), Expect = 0.023
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 120 GHFGVVKYLVEHG--ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNT 177
G + + L++ G +FE+ + G + + +A +K L+ A + K +
Sbjct: 13 GELDIARRLLDIGINPNFEIYD--GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES 70
Query: 178 ALHDCAEAGSIEILKLLLSHGARMDVDSY--GMTPLLAAAVVGHQHIVEYLI 227
LHD E G ++ ++ LL G D Y GMTPL A ++ I++ LI
Sbjct: 71 ELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLI 122
Score = 30.7 bits (69), Expect = 0.68
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGM-TPL 211
G I + LL + + N + G + + + E +KLL+ HGA DV + + L
Sbjct: 13 GELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESEL 72
Query: 212 LAAAVVGHQHIVEYLIGLN 230
A G VE L+ L
Sbjct: 73 HDAVEEGDVKAVEELLDLG 91
Score = 29.2 bits (65), Expect = 2.0
Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 30/146 (20%)
Query: 34 GATPLIMACRNGHKEIVEYLVK-ECKADVEETG-------AVM----------FDH---- 71
G TPL +A +I++ L+ D+ T AVM DH
Sbjct: 102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL 161
Query: 72 --ETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS-TPLRAACFDGHFGVVKYL 128
E G PL A A G + I + L++ GA ++ + L A + +V+
Sbjct: 162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF 221
Query: 129 VEHGAD----FEVSNRHGHTCLMIAC 150
++ GAD F + T L + C
Sbjct: 222 IKRGADCNIMFMIEGEE-CTILDMIC 246
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 56.8 bits (137), Expect = 2e-09
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 17/124 (13%)
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAAC--------FDGHFGVVKYLVEHGADFEVSNR 140
IV+ + GA VN STPL C + +VK L+E+GAD N
Sbjct: 51 TDIVKLFINLGANVNGLDNEYSTPL---CTILSNIKDYKHMLDIVKILIENGADINKKNS 107
Query: 141 HGHT---CLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG---SIEILKLL 194
G T CL+ Y + I+ +++ AD G T L ++ IEI+KLL
Sbjct: 108 DGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLL 167
Query: 195 LSHG 198
L G
Sbjct: 168 LEKG 171
Score = 55.6 bits (134), Expect = 6e-09
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 17/124 (13%)
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFG---VVKYLVEHGADFEVSNRHGHTC 145
L IV+ L+E+GA +N K TPL +G+ ++ +++E+GAD + ++ G T
Sbjct: 89 LDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTM 148
Query: 146 LMIACYKGHY---RIVKYLLSLNADMNRKSSK-GNTALH-------DCAEAGSIEILKLL 194
L + H+ I+K LL D+N ++K LH D +A +ILKL
Sbjct: 149 LQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDA---DILKLF 205
Query: 195 LSHG 198
+ +G
Sbjct: 206 VDNG 209
Score = 29.0 bits (65), Expect = 2.6
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM 201
G L + + +I +YLL L D+N + GNT L E S I +L+
Sbjct: 258 GFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNK 317
Query: 202 DVDSY 206
+ SY
Sbjct: 318 NTISY 322
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 56.0 bits (135), Expect = 4e-09
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 34 GATPLIMACRNGHKEIVEYLVKE-CKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
G TPL +A G+++ V L+K C + + G LW A +A H I
Sbjct: 558 GRTPLHIAASKGYEDCVLVLLKHACNVHIRD----------ANGNTALWNAISAKHHKIF 607
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
+ L H A + S L A +K L++ G + + + G T L +A +
Sbjct: 608 RILY-HFASI-SDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAE 665
Query: 153 GHYRIVKYLLSLNADMNRKS 172
H +V+ L+ AD+++ +
Sbjct: 666 DHVDMVRLLIMNGADVDKAN 685
Score = 51.8 bits (124), Expect = 1e-07
Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 13/185 (7%)
Query: 46 HKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSK 105
HKE+ + V + D +H+ A L A+ G+ +++ L++ +
Sbjct: 501 HKELHDLNVGDLLGDNGG------EHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIG 554
Query: 106 TRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLN 165
TPL A G+ V L++H + + + +G+T L A H++I + L
Sbjct: 555 DSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFA 614
Query: 166 ADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS---YGMTPLLAAAVVGHQHI 222
+ + + L A+ + +K LL G ++VDS G T L A H +
Sbjct: 615 SISDPHA--AGDLLCTAAKRNDLTAMKELLKQG--LNVDSEDHQGATALQVAMAEDHVDM 670
Query: 223 VEYLI 227
V LI
Sbjct: 671 VRLLI 675
Score = 47.2 bits (112), Expect = 4e-06
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
+G PL AA+ G+ V L++H V+ + +T L A H + + L +
Sbjct: 557 KGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFAS- 615
Query: 135 FEVSNRH-GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL 193
+S+ H L A + +K LL +++ + +G TAL +++++L
Sbjct: 616 --ISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRL 673
Query: 194 LLSHGARMD 202
L+ +GA +D
Sbjct: 674 LIMNGADVD 682
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 53.4 bits (128), Expect = 3e-08
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 84 AAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGH 143
AA+G + L+ GA N + TPL AC +GH VV+ L+E GAD + ++ G
Sbjct: 90 AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGK 149
Query: 144 TCLMIACYKGHYRIVKYLLS 163
T L +A G +V+ L
Sbjct: 150 TPLELAEENGFREVVQLLSR 169
Score = 51.4 bits (123), Expect = 1e-07
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
+ L+ GAD + G T L IAC GH ++V+ LL AD G T L E
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157
Query: 185 AGSIEILKLLLSH-------GARMDVDSYGMTP 210
G E+++LL H GA DS+ P
Sbjct: 158 NGFREVVQLLSRHSQCHFELGANAKPDSFTGKP 190
Score = 37.6 bits (87), Expect = 0.004
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH 131
+G PL A A GH+ +V+ L+E GA + TPL A +G VV+ L H
Sbjct: 114 DGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170
Score = 30.6 bits (69), Expect = 0.82
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPI 91
+ G TPL +AC NGH ++V L+ E AD +G PL A G +
Sbjct: 113 YDGRTPLHIACANGHVQVVRVLL-EFGADPTLLDK--------DGKTPLELAEENGFREV 163
Query: 92 VQFLVEH 98
VQ L H
Sbjct: 164 VQLLSRH 170
Score = 27.6 bits (61), Expect = 7.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVE 62
G TPL +A NG +E+V+ L + + E
Sbjct: 148 GKTPLELAEENGFREVVQLLSRHSQCHFE 176
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 48.1 bits (115), Expect = 5e-08
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 128 LVEHG-ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH 180
L+EHG D ++ +G+T L +A G +V++LL D+N + S G TAL
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54
Score = 45.8 bits (109), Expect = 3e-07
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 95 LVEHG-AKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
L+EHG +N+ +TPL A G +V++L++ G D + + G T L +A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 36.6 bits (85), Expect = 8e-04
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 165 NADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAA 214
D+N GNT LH A+ G++E+++ LL G +++ DS G+T L A
Sbjct: 6 PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 31.6 bits (72), Expect = 0.037
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 33 GGATPLIMACRNGHKEIVEYLVK 55
G TPL +A + G E+V++L+K
Sbjct: 15 NGNTPLHLAAKYGALELVQWLLK 37
Score = 31.6 bits (72), Expect = 0.040
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 194 LLSHGAR--MDVDSYGMTPLLAAAVVGHQHIVEYLIGLNI 231
LL HG D G TPL AA G +V++L+ +
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGV 40
Score = 31.2 bits (71), Expect = 0.065
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 63 ETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAA 116
E G + + G PL AA G L +VQ+L++ G +N + T L A
Sbjct: 3 EHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 42.5 bits (101), Expect = 3e-06
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 141 HGHTCLMIACYKGHYRIVKYLLSLNADMNRK 171
G+T L +A GH +VK LL AD+N +
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNAR 31
Score = 39.5 bits (93), Expect = 4e-05
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTR 107
+G PL AA GHL +V+ L+E GA VN++ +
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 38.7 bits (91), Expect = 8e-05
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 174 KGNTALHDCAEAGSIEILKLLLSHGARMDV 203
GNT LH A G +E++KLLL GA ++
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNA 30
Score = 36.4 bits (85), Expect = 5e-04
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADV 61
G TPL +A RNGH E+V+ L+ E ADV
Sbjct: 2 GNTPLHLAARNGHLEVVKLLL-EAGADV 28
Score = 34.8 bits (81), Expect = 0.002
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNR 140
TPL A +GH VVK L+E GAD ++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 28.3 bits (64), Expect = 0.31
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 206 YGMTPLLAAAVVGHQHIVEYLI 227
G TPL AA GH +V+ L+
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLL 22
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 45.1 bits (107), Expect = 2e-05
Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 15/135 (11%)
Query: 91 IVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFG------VVKYLVEHGADFEVSNRHGHT 144
IV+ L+++GA VN K TPL A + +VK L++ GAD + +G +
Sbjct: 52 IVKLLIDNGADVNYKGYIE-TPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVS 110
Query: 145 CLMIACYKGHYR---IVKYLLSLNADMNR-KSSKGNTALHDCAEAGSI--EILKLLLSHG 198
++ Y + ++++LLS ++N K+S+G LH E+ S+ +++K+LLS G
Sbjct: 111 PIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFG 170
Query: 199 ARM--DVDSYGMTPL 211
+ YG+TP+
Sbjct: 171 VNLFEKTSLYGLTPM 185
Score = 39.3 bits (92), Expect = 0.001
Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 40/229 (17%)
Query: 36 TPLIMACRNGH------KEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH- 88
TPL RN K+IV+ L+K AD+ + +T G P+ C +
Sbjct: 71 TPLCAVLRNREITSNKIKKIVKLLLKF-GADI--------NLKTFNGVSPIVCFIYNSNI 121
Query: 89 --LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDG---HFGVVKYLVEHGAD-FEVSNRHG 142
+++FL+ G VN + L + V+K L+ G + FE ++ +G
Sbjct: 122 NNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYG 181
Query: 143 HTCLMIACYKGHY------RIVKYLLSLNADMNRKSSKGNTAL------HDCAEAGSIEI 190
T + I Y + +++KYL+ ++ ++ + L + ++
Sbjct: 182 LTPMNI--YLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKV 239
Query: 191 LKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGL----NIVSRK 235
L +L + D G PLL +A V + YL+ L VS+
Sbjct: 240 LNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKD 288
Score = 38.2 bits (89), Expect = 0.003
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 27/128 (21%)
Query: 92 VQFLVEHGAKVNSKTRTNSTPLR-AACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC 150
++FL+ G VN + R NS L D +VK L+++GAD N G+ +
Sbjct: 19 LEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADV---NYKGYIETPLCA 75
Query: 151 YKGHY--------RIVKYLLSLNADMNRKSSKG---------NTALHDCAEAGSIEILKL 193
+ +IVK LL AD+N K+ G N+ +++C ++L+
Sbjct: 76 VLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNC------DMLRF 129
Query: 194 LLSHGARM 201
LLS G +
Sbjct: 130 LLSKGINV 137
Score = 33.6 bits (77), Expect = 0.10
Identities = 23/114 (20%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGH-------FGVVKYLVEHGADFEVSNRH 141
+ ++++L++ G + + + + L + D + F V+ +++++ ++
Sbjct: 198 IKVIKYLIKKGVNIETNNNGSESVLESF-LDNNKILSKKEFKVLNFILKY-IKINKKDKK 255
Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
G L+I+ +Y YLL L D+ S G+T L + G+I++L +L
Sbjct: 256 GFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRIL 309
Score = 30.5 bits (69), Expect = 0.82
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMI 148
++ F++++ K+N K + PL + ++ YL++ G D ++ G T L
Sbjct: 237 FKVLNFILKY-IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTY 295
Query: 149 ACYKGHYRIVKYLLSL 164
A G+ ++ +L L
Sbjct: 296 AIKHGNIDMLNRILQL 311
Score = 30.1 bits (68), Expect = 1.1
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 158 VKYLLSLNADMNRKSSKGNTAL------HDCAEAGSIEILKLLLSHGARMDVDSYGMTPL 211
+++LL D+N + +GN+ L D I+I+KLL+ +GA ++ Y TPL
Sbjct: 19 LEFLLRTGFDVN-EEYRGNSILLLYLKRKDV----KIKIVKLLIDNGADVNYKGYIETPL 73
Query: 212 LA 213
A
Sbjct: 74 CA 75
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 38.7 bits (91), Expect = 6e-05
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 141 HGHTCLMIACYKGHYRIVKYLLSLNADMN 169
G T L +A G+ +VK LL AD+N
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29
Score = 36.0 bits (84), Expect = 6e-04
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 174 KGNTALHDCAEAGSIEILKLLLSHGARMDV 203
G T LH AE G++E++KLLL GA ++
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 32.2 bits (74), Expect = 0.013
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 34 GATPLIMACRNGHKEIVEYLVKE 56
G TPL +A NG+ E+V+ L+ +
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDK 24
Score = 31.8 bits (73), Expect = 0.017
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVN 103
+G PL AA G+L +V+ L++ GA +N
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29
Score = 29.9 bits (68), Expect = 0.096
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEV 137
TPL A +G+ VVK L++ GAD
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 26.8 bits (60), Expect = 1.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 206 YGMTPLLAAAVVGHQHIVEYLI 227
G TPL AA G+ +V+ L+
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLL 22
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 42.4 bits (100), Expect = 1e-04
Identities = 37/136 (27%), Positives = 51/136 (37%), Gaps = 34/136 (25%)
Query: 121 HFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS-------- 172
+ + + L+ V G T L + V+ +L RKS
Sbjct: 65 NLELTELLLNLSCRGAV----GDTLLHAIS-LEYVDAVEAILLHLLAAFRKSGPLELAND 119
Query: 173 ------SKGNTALHDCAEAGSIEILKLLLSHGARM-------------DVDS--YGMTPL 211
+ G TALH A + EI+KLLL GA + VDS +G +PL
Sbjct: 120 QYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPL 179
Query: 212 LAAAVVGHQHIVEYLI 227
AAA +G IV L
Sbjct: 180 NAAACLGSPSIVALLS 195
Score = 35.4 bits (82), Expect = 0.021
Identities = 52/221 (23%), Positives = 77/221 (34%), Gaps = 43/221 (19%)
Query: 38 LIMACRNGHKEIVEYLVKECKADVEETG------AVMFDHETVEGAPPLWCAAAAGHLPI 91
L+ A + + VE ++ A ++G T G L AA + I
Sbjct: 85 LLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTP-GITALHLAAHRQNYEI 143
Query: 92 VQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACY 151
V+ L+E GA V P RA ++ G D S HG + L A
Sbjct: 144 VKLLLERGASV---------PARACG-------DFFVKSQGVD---SFYHGESPLNAAAC 184
Query: 152 KGHYRIVKYLLSLNADMNRKSSKGNTALHDCA---------EAGSIEILKLLLSHGARMD 202
G IV L AD+ S GNT LH E S ++ LS ++
Sbjct: 185 LGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLR 244
Query: 203 --------VDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRK 235
++ G+TPL AA G + + + +K
Sbjct: 245 DSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKK 285
Score = 30.0 bits (68), Expect = 1.3
Identities = 39/183 (21%), Positives = 55/183 (30%), Gaps = 54/183 (29%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE------GAPPLWCAAAAG 87
G T L +A + EIV+ L+ E A V F ++ G PL AA G
Sbjct: 128 GITALHLAAHRQNYEIVKLLL-ERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLG 186
Query: 88 HLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLM 147
IV L E A + + N H +M
Sbjct: 187 SPSIVALLSEDPADIL-----------------------------TADSLGNTLLHLLVM 217
Query: 148 IACYKGHYR---------IVKYL------LSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
+K Y + L L +N +G T L A+ G I + +
Sbjct: 218 ENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNH---QGLTPLKLAAKEGRIVLFR 274
Query: 193 LLL 195
L L
Sbjct: 275 LKL 277
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 35.7 bits (83), Expect = 8e-04
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 141 HGHTCLMIACYKGHYRIVKYLLSLNADMN 169
G+T L +A G+ +VK LL AD+N
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADIN 29
Score = 33.4 bits (77), Expect = 0.006
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 174 KGNTALHDCAEAGSIEILKLLLSHGA 199
GNT LH A G++E++KLLL HGA
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGA 26
Score = 31.8 bits (73), Expect = 0.021
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVN 103
+G PL AA G+L +V+ L+EHGA +N
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADIN 29
Score = 31.5 bits (72), Expect = 0.028
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEV 137
TPL A +G+ +VK L+EHGAD
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADINA 30
Score = 31.1 bits (71), Expect = 0.033
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADV 61
G TPL +A RNG+ E+V+ L+ E AD+
Sbjct: 2 GNTPLHLAARNGNLELVKLLL-EHGADI 28
Score = 24.5 bits (54), Expect = 7.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 206 YGMTPLLAAAVVGHQHIVEYLI 227
G TPL AA G+ +V+ L+
Sbjct: 1 DGNTPLHLAARNGNLELVKLLL 22
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 39.0 bits (91), Expect = 0.001
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 20/136 (14%)
Query: 89 LPIVQFLVEHGAKVNSKTR-TNSTPLRAACFDGHF---------GVVKYLVEHGADFEVS 138
+ I++FL+E+GA VN KTR N + L H+ ++K L++ G+
Sbjct: 66 VEILKFLIENGADVNFKTRDNNLSAL------HHYLSFNKNVEPEILKILIDSGSSITEE 119
Query: 139 NRHGHTCLMIACYKGHYRI--VKYLLSLNADMNRKSSKGNTALHDCAEAGS-IEILKLLL 195
+ G L + + RI +K L+ K N L+ S +I L
Sbjct: 120 DEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLT 179
Query: 196 SHGARM-DVDSYGMTP 210
S G + + + G
Sbjct: 180 SLGIDINETNKSGYNC 195
Score = 28.6 bits (64), Expect = 2.2
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 91 IVQFLVEHGAKVNSKTRTNSTPLRA-ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
+++ L++ G +K N+ L + F + +L G D +N+ G+ C +
Sbjct: 140 VIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLI 199
Query: 150 CYKG 153
++
Sbjct: 200 KFRN 203
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 37.7 bits (87), Expect = 0.004
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 11/172 (6%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLR--AACFDGHFGVVKYLVEHG 132
+G PL A+ + IV L+ HGA N+ + + TPL + D + LV++G
Sbjct: 71 DGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYG 130
Query: 133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH-----DCAEAGS 187
A S ++AC R+ K ++S+ + G +H D +A +
Sbjct: 131 AKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKAST 190
Query: 188 IEILKLLLSHGARMDVDSYGMTPL--LAAAVVGHQHIVEYLIGLNIVSRKEK 237
I + L ++ D D G TPL + + V + I+ L+ V+++ K
Sbjct: 191 ISWMMKLGISPSKPDHD--GNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNK 240
Score = 33.9 bits (77), Expect = 0.067
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH--DC 182
V+ L+ G ++ G+ L IA + RIV LL+ AD N + T L+
Sbjct: 55 VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSG 114
Query: 183 AEAGSIEILKLLLSHGARMD--VDSYGMTPLLA 213
+ IE + LL+ +GA+++ VD G PLLA
Sbjct: 115 TDDEVIERINLLVQYGAKINNSVDEEGCGPLLA 147
Score = 31.2 bits (70), Expect = 0.55
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
R V+ LL N GN LH ++ + I+ +LL+HGA + D TPL
Sbjct: 53 RFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPL 109
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 34.5 bits (79), Expect = 0.054
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 19/106 (17%)
Query: 124 VVKYLVEHGADFEVSNRHGHTCLMIACYKGHY---RIVKYLLSLNADMNRKSSKGNTALH 180
VV ++ G + G TCL + H I+K L D+N + GNT LH
Sbjct: 299 VVYSFLQPGVKLHYKDSAGRTCLHQYILR-HNISTDIIKLLHEYGNDLNEPDNIGNTVLH 357
Query: 181 DCAEAGSI--------------EILKLLLSHGARMD-VDSYGMTPL 211
S+ ++++ L+S GA + V+ G TPL
Sbjct: 358 TYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPL 403
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 33.8 bits (77), Expect = 0.084
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 134 DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH-DCAEAGSIEILK 192
D + ++ G T L A +V LL +D+N +S+ G T + E+ +IE+LK
Sbjct: 444 DINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLK 503
Query: 193 LLLSHGARMD--VDS 205
+LL H +D +DS
Sbjct: 504 MLLCHKPTLDCVIDS 518
Score = 28.0 bits (62), Expect = 4.9
Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 32/154 (20%)
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYL--------VEHGADFEVSNR 140
+P+V+ ++E+GA VN + R D + +KYL V H D E+
Sbjct: 346 IPLVECMLEYGAVVNKEAIHGY--FRNINIDSY--TMKYLLKKEGGDAVNHLDDGEIPI- 400
Query: 141 HGHTC--------LMIACYKGHYRIVKY----LLSLN------ADMNRKSSKGNTALHDC 182
GH C YK + Y L ++N D+N +G T LH
Sbjct: 401 -GHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKA 459
Query: 183 AEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAV 216
++ LLL G+ +++ S +A A+
Sbjct: 460 VRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAI 493
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 33.0 bits (75), Expect = 0.14
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMI 148
L I + + + +N T L A + G+ +V +L+E+GA+ +G+TCL +
Sbjct: 201 LEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDV 260
Query: 149 ACYKG--------HYRIVKYLL 162
A +G H +I++ LL
Sbjct: 261 AVDRGSVIARRETHLKILEILL 282
Score = 30.7 bits (69), Expect = 0.71
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 124 VVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCA 183
+ K + + D + G T L A Y G+ +V +LL A++N S G T L
Sbjct: 203 IYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAV 262
Query: 184 EAGSI--------EILKLLLSHGARMD 202
+ GS+ +IL++LL +D
Sbjct: 263 DRGSVIARRETHLKILEILLREPLSID 289
Score = 30.7 bits (69), Expect = 0.78
Identities = 40/190 (21%), Positives = 77/190 (40%), Gaps = 39/190 (20%)
Query: 40 MACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHG 99
+ +N ++I ++K C + V++ + VE + IV F+V+HG
Sbjct: 96 LVSKNYMEDIFSIIIKNCNS-VQDLLLYYLSNAYVE-------------IDIVDFMVDHG 141
Query: 100 AKVNSKTRTNSTPLRAACFDGHFG--------VVKYLV------EHGADFEVSNRHGHTC 145
A + + C + +F VV++++ E+ ++ +T
Sbjct: 142 AVI----------YKIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTR 191
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VD 204
+ I K + D+N+ + G T L+ AG I+++ LL +GA ++ V
Sbjct: 192 GFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVM 251
Query: 205 SYGMTPLLAA 214
S G T L A
Sbjct: 252 SNGYTCLDVA 261
>gnl|CDD|165098 PHA02730, PHA02730, ankyrin-like protein; Provisional.
Length = 672
Score = 32.7 bits (74), Expect = 0.18
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 21/136 (15%)
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGH----FGVVKYLVE---HGADFEVSNRH 141
+PI++ ++++GA ++ KT N+ PL + + VV+++VE H A VSN +
Sbjct: 359 IPILRCMLDNGATMD-KTTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSN-N 416
Query: 142 GHTCLM-----------IACYKGHYRIVKYLLS-LNADMNRKSSKGNTALHDCAEAGSIE 189
G C+ CY+ V +LS D++ ++ T L+ + +I+
Sbjct: 417 GRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQ 476
Query: 190 ILKLLLSHGARMDVDS 205
+ LL +GA ++ S
Sbjct: 477 FARRLLEYGASVNTTS 492
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 31.9 bits (72), Expect = 0.27
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM 201
+IVK LL D ++ KGNTAL+ ++G+++ +KL + R+
Sbjct: 75 KIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 120
Score = 26.9 bits (59), Expect = 9.2
Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 3/124 (2%)
Query: 74 VEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
V G L+ A A ++ +V L+ GA N N PL A +VK L+ G
Sbjct: 28 VHGHSALYYAIADNNVRLVCTLLNAGALKN--LLENEFPLHQAATLEDTKIVKILLFSGM 85
Query: 134 DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG-NTALHDCAEAGSIEILK 192
D + G+T L A G+ + VK + N + G T+ + + I+
Sbjct: 86 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS 145
Query: 193 LLLS 196
LS
Sbjct: 146 YFLS 149
>gnl|CDD|226065 COG3535, COG3535, Uncharacterized conserved protein [Function
unknown].
Length = 357
Score = 31.5 bits (72), Expect = 0.31
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 19 RTHEEIQMVTKFKFGG--ATPLIMACRNGHKEIVE 51
R E+QM T F G ATPL++ G++ I+E
Sbjct: 131 RAFPELQMTT-FYLHGLPATPLVICDERGNRVIIE 164
>gnl|CDD|239032 cd02114, bact_SorA_Moco, sulfite:cytochrome c oxidoreductase
subunit A (SorA), molybdopterin binding domain. SorA is
involved in oxidation of sulfur compounds during
chemolithothrophic growth. Together with SorB, a small
c-type heme containing subunit, it forms a hetrodimer.
It is a member of the sulfite oxidase (SO) family of
molybdopterin binding domains. This molybdopterin
cofactor (Moco) binding domain is found in a variety of
oxidoreductases, main members of this family are nitrate
reductase (NR) and sulfite oxidase (SO). Common features
of all known members of this family are that they
contain one single pterin cofactor and part of the
coordination of the metal (Mo) is a cysteine ligand of
the protein and that they catalyze the transfer of an
oxygen to or from a lone pair of electrons on the
substrate.
Length = 367
Score = 31.7 bits (72), Expect = 0.36
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 12/59 (20%)
Query: 83 AAAAGHLPIVQFLV-------EHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
A PI +F V E+GA V LR FDG G+ + V+ AD
Sbjct: 245 TAPDRTAPINRFKVRSFITSLENGAIVAPAGEL---ALRGIAFDGGSGIRR--VDVSAD 298
>gnl|CDD|217691 pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose dehydrogenase
family, UDP binding domain. The UDP-glucose/GDP-mannose
dehydrogenaseses are a small group of enzymes which
possesses the ability to catalyze the NAD-dependent
2-fold oxidation of an alcohol to an acid without the
release of an aldehyde intermediate.
Length = 103
Score = 29.5 bits (67), Expect = 0.50
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 174 KGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIV 232
K NT D E+ +++I++ LL GA + V D P + + + ++
Sbjct: 8 KPNTD--DLRESPALDIIEELLEEGAEVVVYD-----PYVPEEAIEALGEDGVTLVDDLE 60
Query: 233 SRKEKIDAL 241
+ DA+
Sbjct: 61 EALKGADAI 69
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 29.9 bits (67), Expect = 1.2
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 167 DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVE 224
D+N+ G + L+ C E+ S+ +++ L+ +GA ++ YG T + ++ H I E
Sbjct: 402 DINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPE 460
Score = 29.9 bits (67), Expect = 1.5
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 117 CFDGH-FGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH 154
C + H +V++L+++GAD ++ ++G TC+ I H
Sbjct: 417 CIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAH 455
>gnl|CDD|214954 smart00984, UDPG_MGDP_dh_C, UDP binding domain. The
UDP-glucose/GDP-mannose dehydrogenases are a small group
of enzymes which possesses the ability to catalyse the
NAD-dependent 2-fold oxidation of an alcohol to an acid
without the release of an aldehyde intermediate.
Length = 99
Score = 28.2 bits (64), Expect = 1.4
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 174 KGNTALHDCAEAGSIEILKLLLSHGARMDV 203
K NT D E+ +++I++ LL GA + V
Sbjct: 8 KPNT--DDLRESPALDIIEELLEAGAEVVV 35
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 28.7 bits (64), Expect = 1.7
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 126 KYLVEHGADFEVSNR-HGHTCLMIACYKGHYRIVKYLLSL-NADMNRKSSKGNTALHDCA 183
K L+E GAD R G+T L IA Y +Y + +L + +M + T +
Sbjct: 75 KLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVAC 134
Query: 184 EAGSIEILKLLLSHGARMDV 203
E +++ +L + GA+ V
Sbjct: 135 ERHDAKMMNILRAKGAQCKV 154
>gnl|CDD|147995 pfam06128, Shigella_OspC, Shigella flexneri OspC protein. This
family consists of the Shigella flexneri specific
protein OspC. The function of this family is unknown but
it is thought that Osp proteins may be involved in post
invasion events related to virulence. Since bacterial
pathogens adapt to multiple environments during the
course of infecting a host, it has been proposed that
Shigella evolved a mechanism to take advantage of a
unique intracellular cue, which is mediated through
MxiE, to express proteins when the organism reaches the
eukaryotic cytosol.
Length = 284
Score = 29.1 bits (65), Expect = 2.0
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 155 YRIVKYLLSLN-ADMNRKSSK---GNTALHDCAEAGSIEILKLLLSHGARMD 202
++++Y ++ D+N K K G+T L + + G+ E++ LL HGA +D
Sbjct: 230 VKVLEYFINRGLVDVNAKFEKVNSGDTMLDNAVKYGNREMIAALLKHGAILD 281
>gnl|CDD|185346 PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.
Length = 95
Score = 27.6 bits (61), Expect = 2.6
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADV---EETGAVMFDH 71
V KF P I+ + K+ +E LVK C A + ++ G+V FD+
Sbjct: 13 VNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDY 60
>gnl|CDD|179688 PRK03971, PRK03971, putative deoxyhypusine synthase; Provisional.
Length = 334
Score = 27.8 bits (62), Expect = 5.0
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 17 EARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGA 66
E R EE + F G T I++ +G +EI+ YLVKE K DV T A
Sbjct: 60 EKRKKEEATV-----FLGYTSNIVS--SGLREIIAYLVKEKKVDVIVTTA 102
>gnl|CDD|132589 TIGR03550, F420_cofG, 7,8-didemethyl-8-hydroxy-5-deazariboflavin
synthase, CofG subunit. This model represents either a
subunit or a domain, depending on whether or not the
genes are fused, of a bifunctional protein that
completes the synthesis of
7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO
is the chromophore of coenzyme F(420), involved in
methanogenesis in methanogenic archaea but found in
certain other lineages as well. The chromophore also
occurs as a cofactor in DNA photolyases in
Cyanobacteria [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 322
Score = 27.6 bits (62), Expect = 5.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 45 GHKEIVEYLVKECKADVEETG 65
G+ +EYL + C+ +EETG
Sbjct: 78 GYDSTLEYLRELCELALEETG 98
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 27.8 bits (62), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 47 KEIVEYLVKECKADVEETGAVMFDHETVEGAPP 79
+E VE LV +CK VE G V+ E V + P
Sbjct: 229 RETVEDLVDKCKEIVEAEGEVIEGEEYVNDSDP 261
>gnl|CDD|218314 pfam04891, NifQ, NifQ. NifQ is involved in early stages of the
biosynthesis of the iron-molybdenum cofactor (FeMo-co),
which is an integral part of the active site of
dinitrogenase. The conserved C-terminal cysteine
residues may be involved in metal binding.
Length = 167
Score = 26.9 bits (60), Expect = 6.7
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 189 EILKLLLSHGARMDVDSYGMTPLLAAAVVGHQH 221
++ LLL+H + ++ + ++A +G H
Sbjct: 68 DLRDLLLAHRSGDGPEARWLAAIIARRCLGPDH 100
>gnl|CDD|225088 COG2177, FtsX, Cell division protein [Cell division and chromosome
partitioning].
Length = 297
Score = 27.2 bits (61), Expect = 7.5
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 11/47 (23%)
Query: 205 SYGMTPLLAAAVVGHQHIVEYLIG----LNIVSRKEKIDALELLGAS 247
G++ LLA A V LIG L I SR+ +I+ ++L+GA+
Sbjct: 170 GIGLSILLALAAV-------LLIGNTIRLAIFSRRREIEVMKLVGAT 209
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.405
Gapped
Lambda K H
0.267 0.0832 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,556,122
Number of extensions: 1174728
Number of successful extensions: 1270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1121
Number of HSP's successfully gapped: 137
Length of query: 247
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 153
Effective length of database: 6,768,326
Effective search space: 1035553878
Effective search space used: 1035553878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (25.9 bits)