RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy599
(247 letters)
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 202 bits (517), Expect = 1e-65
Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 11/197 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
T L A N ++V+Y + A V++ G + PL A GHL +V
Sbjct: 42 NVTLLHWAAINNRIDLVKYYI-SKGAIVDQLG-------GDLNSTPLHWATRQGHLSMVV 93
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+++GA + + + A GH +V YL+ G D ++ +++G T LM A Y+
Sbjct: 94 QLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRT 153
Query: 154 HYR-IVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTP 210
H + LL+ N +N NTALH AG+ ++ LLL GA +D + G +
Sbjct: 154 HSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESA 213
Query: 211 LLAAAVVGHQHIVEYLI 227
L A + ++ +L
Sbjct: 214 LDLAKQRKNVWMINHLQ 230
Score = 198 bits (507), Expect = 4e-64
Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 13/198 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
++ A + G E LV E DV + E L AA + +V+
Sbjct: 9 STWDIVKATQYGIYERCRELV-EAGYDVRQP--------DKENVTLLHWAAINNRIDLVK 59
Query: 94 FLVEHGAKVNSKTR-TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
+ + GA V+ NSTPL A GH +V L+++GAD + + G +C+ +A
Sbjct: 60 YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF 119
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG-SIEILKLLLSHGARMDV--DSYGMT 209
GH IV YL++ D++ G T L A S++ +LLL+ +++ + T
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNT 179
Query: 210 PLLAAAVVGHQHIVEYLI 227
L A + G+ ++ L+
Sbjct: 180 ALHWAVLAGNTTVISLLL 197
Score = 171 bits (435), Expect = 3e-53
Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 11/173 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
+TPL A R GH +V L+ + AD EG + AA GH IV
Sbjct: 76 NSTPLHWATRQGHLSMVVQLM-KYGADPSL--------IDGEGCSCIHLAAQFGHTSIVA 126
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGH-FGVVKYLVEHGADFEV-SNRHGHTCLMIACY 151
+L+ G V+ + TPL A + H + L+ + H +T L A
Sbjct: 127 YLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL 186
Query: 152 KGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVD 204
G+ ++ LL A+++ ++ KG +AL + ++ ++ L D
Sbjct: 187 AGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239
Score = 138 bits (350), Expect = 2e-40
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 2/128 (1%)
Query: 102 VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
+ ++ + A G + + LVE G D ++ T L A +VKY
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 162 LSLNADMNRKSSK-GNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGH 219
+S A +++ +T LH G + ++ L+ +GA + D G + + AA GH
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121
Query: 220 QHIVEYLI 227
IV YLI
Sbjct: 122 TSIVAYLI 129
Score = 100 bits (253), Expect = 4e-26
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 9/107 (8%)
Query: 34 GATPLIMACRNGH-KEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
G TPL+ A H + L+ V + L A AG+ ++
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLL-TFNVSVNLG-------DKYHKNTALHWAVLAGNTTVI 193
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
L+E GA V+++ + L A + ++ +L E N
Sbjct: 194 SLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 202 bits (516), Expect = 2e-65
Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 11/200 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
TPL+ A N H E V+YL+K A V+ EG+ L AA GH +VQ
Sbjct: 44 QRTPLMEAAENNHLEAVKYLIKA-GALVDPK--------DAEGSTCLHLAAKKGHYEVVQ 94
Query: 94 FLVEHGAK-VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
+L+ +G VN + TP+ A H +VK L+ G+D + + + CL A +
Sbjct: 95 YLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS 154
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
G I + LL+ D++ + G++ LH A + + L LS + + + + G TPL
Sbjct: 155 GCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
Query: 212 LAAAVVGHQHIVEYLIGLNI 231
A++ +
Sbjct: 215 QCASLNSQVWSALQMSKALQ 234
Score = 199 bits (509), Expect = 2e-64
Identities = 60/196 (30%), Positives = 95/196 (48%), Gaps = 11/196 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
+PL A GH +I LV + A+++ D T PL AA HL V+
Sbjct: 11 KRSPLHAAAEAGHVDICHMLV-QAGANIDTCSE---DQRT-----PLMEAAENNHLEAVK 61
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSNRHGHTCLMIACYK 152
+L++ GA V+ K ST L A GH+ VV+YL+ +G D + G T ++ A
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
H +VK LLS +D+N + ++ N LH A +G ++I ++LL+ + + +G +PL
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181
Query: 212 LAAAVVGHQHIVEYLI 227
AA V +
Sbjct: 182 HIAARENRYDCVVLFL 197
Score = 139 bits (354), Expect = 4e-41
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 102 VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
+ + +PL AA GH + LV+ GA+ + + T LM A H VKYL
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 162 LSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMTPLLAAAVVG 218
+ A ++ K ++G+T LH A+ G E+++ LLS+G MDV D G TP++ A
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ-MDVNCQDDGGWTPMIWATEYK 122
Query: 219 HQHIVEYLI--GLNI 231
H +V+ L+ G +I
Sbjct: 123 HVDLVKLLLSKGSDI 137
Score = 138 bits (351), Expect = 1e-40
Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TP+I A H ++V+ L+ + +D+ E L AA +G + I +
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSK-GSDINIR--------DNEENICLHWAAFSGCVDIAE 161
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ +++ +PL A + + V + +D + N+ G T L A
Sbjct: 162 ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNS 221
Query: 154 HYRIVKYLLSLNAD 167
+ D
Sbjct: 222 QVWSALQMSKALQD 235
Score = 104 bits (261), Expect = 2e-27
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
+F++ +++ + L A GH I L+ A+++ S T L + AE +E +K
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 193 LLLSHGARMDV---DSYGMTPLLAAAVVGHQHIVEYLI 227
L+ GA V D+ G T L AA GH +V+YL+
Sbjct: 62 YLIKAGA--LVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97
Score = 74.8 bits (185), Expect = 2e-16
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 165 NADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIV 223
+ + + + LH AEAG ++I +L+ GA +D TPL+ AA H V
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 224 EYLI--GLNI 231
+YLI G +
Sbjct: 61 KYLIKAGALV 70
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 208 bits (532), Expect = 2e-65
Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 10/195 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A GH IV+ L+ + A V+ PL AA AGH + +
Sbjct: 14 GLTPLHVASFMGHLPIVKNLL-QRGASPNV--------SNVKVETPLHMAARAGHTEVAK 64
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
+L+++ AKVN+K + + TPL A GH +VK L+E+ A+ ++ GHT L IA +G
Sbjct: 65 YLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG 124
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
H V LL A + KG T LH A+ G + + +LLL A + G+TPL
Sbjct: 125 HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLH 184
Query: 213 AAAVVGHQHIVEYLI 227
A + IV+ L+
Sbjct: 185 VAVHHNNLDIVKLLL 199
Score = 206 bits (526), Expect = 1e-64
Identities = 62/195 (31%), Positives = 91/195 (46%), Gaps = 10/195 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A R GH E V L+ E +A T +G PL AA G + + +
Sbjct: 113 GHTPLHIAAREGHVETVLALL-EKEASQACM--------TKKGFTPLHVAAKYGKVRVAE 163
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+E A N+ + TPL A + +VK L+ G +G+T L IA +
Sbjct: 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 223
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
+ + LL N +S +G T LH A+ G E++ LLLS A ++ + G+TPL
Sbjct: 224 QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH 283
Query: 213 AAAVVGHQHIVEYLI 227
A GH + + LI
Sbjct: 284 LVAQEGHVPVADVLI 298
Score = 205 bits (524), Expect = 2e-64
Identities = 62/201 (30%), Positives = 88/201 (43%), Gaps = 12/201 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
TPL A R GH +V+ L+ E A+ T G PL AA GH+ V
Sbjct: 80 DQTPLHCAARIGHTNMVKLLL-ENNANPNLA--------TTAGHTPLHIAAREGHVETVL 130
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+E A T+ TPL A G V + L+E A + ++G T L +A +
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 190
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLL 212
+ IVK LL + + G T LH A+ +E+ + LL +G + G+TPL
Sbjct: 191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 250
Query: 213 AAAVVGHQHIVEYLI--GLNI 231
AA GH +V L+ N
Sbjct: 251 LAAQEGHAEMVALLLSKQANG 271
Score = 205 bits (524), Expect = 3e-64
Identities = 62/197 (31%), Positives = 98/197 (49%), Gaps = 10/197 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A + E+ L+ + E+V+G PL AA GH +V
Sbjct: 212 GYTPLHIAAKQNQVEVARSLL-QYGGSANA--------ESVQGVTPLHLAAQEGHAEMVA 262
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ A N ++ TPL +GH V L++HG + + R G+T L +A + G
Sbjct: 263 LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG 322
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
+ ++VK+LL AD+N K+ G + LH A+ G +I+ LLL +GA + S G TPL
Sbjct: 323 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLA 382
Query: 213 AAAVVGHQHIVEYLIGL 229
A +G+ + + L +
Sbjct: 383 IAKRLGYISVTDVLKVV 399
Score = 203 bits (519), Expect = 1e-63
Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 10/195 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A + G + E L+ E A G G PL A +L IV+
Sbjct: 146 GFTPLHVAAKYGKVRVAELLL-ERDAHPNAAGK--------NGLTPLHVAVHHNNLDIVK 196
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ G +S TPL A V + L+++G + G T L +A +G
Sbjct: 197 LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG 256
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
H +V LLS A+ N + G T LH A+ G + + +L+ HG +D G TPL
Sbjct: 257 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH 316
Query: 213 AAAVVGHQHIVEYLI 227
A+ G+ +V++L+
Sbjct: 317 VASHYGNIKLVKFLL 331
Score = 203 bits (518), Expect = 2e-63
Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 10/195 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A + + +IV+ L+ G PL AA + + +
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPR-GGSPHSP--------AWNGYTPLHIAAKQNQVEVAR 229
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+++G N+++ TPL A +GH +V L+ A+ + N+ G T L + +G
Sbjct: 230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG 289
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
H + L+ ++ + G T LH + G+I+++K LL H A ++ G +PL
Sbjct: 290 HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH 349
Query: 213 AAAVVGHQHIVEYLI 227
AA GH IV L+
Sbjct: 350 QAAQQGHTDIVTLLL 364
Score = 179 bits (456), Expect = 3e-54
Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 22/198 (11%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A + GH E+V L+ + +A+ G PL A GH+P+
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSK-QANGNLGNK--------SGLTPLHLVAQEGHVPVAD 295
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L++HG V++ TR TPL A G+ +VK+L++H AD + G++ L A +G
Sbjct: 296 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG 355
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL---LSHGARMDV-DSYGMT 209
H IV LL A N SS G T L G I + +L + + V D + M+
Sbjct: 356 HTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 415
Query: 210 PLLAAAVVGHQHIVEYLI 227
V+ ++
Sbjct: 416 ---------FPETVDEIL 424
Score = 154 bits (392), Expect = 8e-45
Identities = 48/131 (36%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
G + TPL A F GH +VK L++ GA VSN T L +A GH +
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAV 216
KYLL A +N K+ T LH A G ++KLLL + A ++ + G TPL AA
Sbjct: 63 AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122
Query: 217 VGHQHIVEYLI 227
GH V L+
Sbjct: 123 EGHVETVLALL 133
Score = 154 bits (392), Expect = 9e-45
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 21/169 (12%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL + + GH + + L+ + V+ T T G PL A+ G++ +V+
Sbjct: 278 GLTPLHLVAQEGHVPVADVLI-KHGVMVDAT--------TRMGYTPLHVASHYGNIKLVK 328
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
FL++H A VN+KT+ +PL A GH +V L+++GA + G T L IA G
Sbjct: 329 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388
Query: 154 HYRIVKYLLSL---NADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+ + L + + + + + +L
Sbjct: 389 YISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILDVSE 428
Score = 112 bits (284), Expect = 3e-29
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 21/141 (14%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A G+ ++V++L+ + +ADV T G PL AA GH IV
Sbjct: 311 GYTPLHVASHYGNIKLVKFLL-QHQADVNAK--------TKLGYSPLHQAAQQGHTDIVT 361
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYL---VEHGADFEVSNRHGHTCLMIAC 150
L+++GA N + +TPL A G+ V L + + VS++H +
Sbjct: 362 LLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP---- 417
Query: 151 YKGHYRIVKYLLSLNADMNRK 171
V +L ++ D +
Sbjct: 418 -----ETVDEILDVSEDEGEE 433
Score = 43.6 bits (104), Expect = 3e-05
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 19/75 (25%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECK--ADVEETGAVMFDHETVEGAPPLWCAAAAGHLPI 91
G TPL +A R G+ + + L + V + +
Sbjct: 377 GTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK---HRMS--------------FPET 419
Query: 92 VQFLVEHGAKVNSKT 106
V +++ +
Sbjct: 420 VDEILDVSEDEGEEL 434
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 201 bits (513), Expect = 2e-64
Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 10/194 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
+P+ A +GH+ + L+ + V T + PL A GHL V+
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQ-GWAVNII--------TADHVSPLHEACLGGHLSCVK 109
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L++HGA+VN T TPL AC G + V L++HGA + + + + A +G
Sbjct: 110 ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRG 168
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLA 213
H V L++ +++ K S T L+ E +K LL GA ++ +PL A
Sbjct: 169 HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHA 228
Query: 214 AAVVGHQHIVEYLI 227
+ + L+
Sbjct: 229 VVRTASEELACLLM 242
Score = 185 bits (472), Expect = 3e-58
Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 18/195 (9%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G+ P G + + L+ + +D + P+ AA GH ++
Sbjct: 33 GSKPAGPRDFPGIRLLSNPLMGDAVSD--WS--------------PMHEAAIHGHQLSLR 76
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ G VN T + +PL AC GH VK L++HGA HT L AC G
Sbjct: 77 NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 136
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
+ V LL A + + S + +H+ A G +E + L+++G +D S+ TPL
Sbjct: 137 SWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLY 195
Query: 213 AAAVVGHQHIVEYLI 227
A + V+ L+
Sbjct: 196 LACENQQRACVKKLL 210
Score = 185 bits (472), Expect = 3e-58
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 13/195 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
+PL AC GH V+ L+ + A V T + PL+ A +G V
Sbjct: 92 HVSPLHEACLGGHLSCVKILL-KHGAQVNGV--------TADWHTPLFNACVSGSWDCVN 142
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L++HGA V ++ ++P+ A GH V L+ +G + + H T L +AC
Sbjct: 143 LLLQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ 201
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLL 212
VK LL AD+N + ++ LH S E+ LL+ GA ++ G P+
Sbjct: 202 QRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVE 260
Query: 213 AAAVVGHQHIVEYLI 227
+L
Sbjct: 261 LVPPESP-LAQLFLE 274
Score = 171 bits (437), Expect = 5e-53
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 11/188 (5%)
Query: 40 MACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHG 99
M + H LV + + ++G+ P G L+ +
Sbjct: 1 MGSSHHHHHHSSGLV-PRGSHMASMDG---KQGGMDGSKPAGPRDFPGIR-----LLSNP 51
Query: 100 AKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVK 159
++ + + +P+ A GH ++ L+ G + + L AC GH VK
Sbjct: 52 LMGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVK 109
Query: 160 YLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGH 219
LL A +N ++ +T L + +GS + + LLL HGA + +S +P+ AA GH
Sbjct: 110 ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGH 169
Query: 220 QHIVEYLI 227
V LI
Sbjct: 170 VECVNSLI 177
Score = 161 bits (409), Expect = 9e-49
Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 12/169 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
TPL AC +G + V L++ A V+ + A P+ AA GH+ V
Sbjct: 125 WHTPLFNACVSGSWDCVNLLLQH-GASVQPES---------DLASPIHEAARRGHVECVN 174
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ +G ++ K TPL AC + VK L+E GAD + + L
Sbjct: 175 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTA 233
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
+ L+ AD K+++G + + L L GA +
Sbjct: 234 SEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLP 281
Score = 129 bits (327), Expect = 1e-36
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 11/137 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
A+P+ A R GH E V L+ ++ DH+ PL+ A V+
Sbjct: 157 LASPIHEAARRGHVECVNSLI-AYGGNI--------DHKISHLGTPLYLACENQQRACVK 207
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+E GA VN + + +PL A + L++ GAD + N G + + +
Sbjct: 208 KLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPES 266
Query: 154 HYRIVKYLLSLNADMNR 170
+L A + +
Sbjct: 267 P-LAQLFLEREGASLPK 282
Score = 36.3 bits (85), Expect = 0.005
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 14/76 (18%)
Query: 183 AEAGSIEILKLLLSHGARMD-VDSY-----GMTPLLAAAVVGHQHIVEYLIG-------- 228
+ L+ G+ M +D G P G + + L+G
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSP 62
Query: 229 LNIVSRKEKIDALELL 244
++ + +L L
Sbjct: 63 MHEAAIHGHQLSLRNL 78
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 198 bits (507), Expect = 9e-64
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 10/194 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
+P+ A +GH+ + L+ V T + PL A GHL V+
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLI-SQGWAVNII--------TADHVSPLHEACLGGHLSCVK 53
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L++HGA+VN T TPL AC G + V L++HGA + + + + A +G
Sbjct: 54 ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRG 112
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLA 213
H V L++ +++ K S T L+ E +K LL GA ++ +PL A
Sbjct: 113 HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHA 172
Query: 214 AAVVGHQHIVEYLI 227
A + + L+
Sbjct: 173 VARTASEELACLLM 186
Score = 185 bits (472), Expect = 2e-58
Identities = 42/195 (21%), Positives = 72/195 (36%), Gaps = 14/195 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
TPL AC +G + V L+ + A V+ + A P+ AA GH+ V
Sbjct: 69 WHTPLFNACVSGSWDCVNLLL-QHGASVQPES---------DLASPIHEAARRGHVECVN 118
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ +G ++ K TPL AC + VK L+E GAD + + L
Sbjct: 119 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTA 177
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
+ L+ AD K+++G + + +L L + +
Sbjct: 178 SEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRK 235
Query: 213 AAAVVGHQHIVEYLI 227
+ H I + ++
Sbjct: 236 CFGIQQHHKITKLVL 250
Score = 164 bits (419), Expect = 2e-50
Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 12/166 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
A+P+ A R GH E V L+ ++ DH+ PL+ A V+
Sbjct: 101 LASPIHEAARRGHVECVNSLI-AYGGNI--------DHKISHLGTPLYLACENQQRACVK 151
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+E GA VN + + +PL A + L++ GAD + N G + + +
Sbjct: 152 KLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES 210
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+ + L + +I KL+L
Sbjct: 211 P--LAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 94.0 bits (235), Expect = 2e-23
Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 11/101 (10%)
Query: 33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
G +PL R +E+ L+ + AD + EG P+ +
Sbjct: 165 GQDSPLHAVARTASEELACLLM-DFGADTQAK--------NAEGKRPVELVPPESP--LA 213
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
Q +E + + H + K ++
Sbjct: 214 QLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 54.0 bits (131), Expect = 6e-09
Identities = 7/68 (10%), Positives = 17/68 (25%), Gaps = 11/68 (16%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G P+ + + + + E + + C H I +
Sbjct: 199 GKRPVELVPPESP--LAQLFL-EREGPPSLM--------QLCRLRIRKCFGIQQHHKITK 247
Query: 94 FLVEHGAK 101
++ K
Sbjct: 248 LVLPEDLK 255
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 193 bits (493), Expect = 6e-63
Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 9/179 (5%)
Query: 33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
G + + G + ++ + G + + G PL A+A G + V
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHL--------RKGDNLVNKPDERGFTPLIWASAFGEIETV 52
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
+FL+E GA + + + L A G+ +V L+E D + + +G T L+ A
Sbjct: 53 RFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG 112
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTP 210
H + V+ LL+ AD+ ++ G T + G ++ +++ +H ++ + P
Sbjct: 113 NHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 172 bits (439), Expect = 1e-54
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 2/151 (1%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGA-KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEV 137
+ AA G L ++ + G VN TPL A G V++L+E GAD +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
+ + L +A G+ IV LL + D+N G T L ++ ++ LL+
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR 124
Query: 198 GARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
GA + G TP+ A +G++ + + +
Sbjct: 125 GADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
Score = 136 bits (345), Expect = 1e-40
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 109 NSTPLRAACFDGHFGVVKYLVEHGADFE-VSNRHGHTCLMIACYKGHYRIVKYLLSLNAD 167
+S + G +K + G + + G T L+ A G V++LL AD
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 168 MNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
+ + + +AL + G +I+ LLL +++ D G TPLL A H VE L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 227 I 227
+
Sbjct: 122 L 122
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 187 bits (478), Expect = 1e-59
Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 17/203 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVK---ECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP 90
G TPL +A G+ V LV + +++ PL A
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY--------NNLRQTPLHLAVITTLPS 60
Query: 91 IVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA----DFEVSNRHGHTCL 146
+V+ LV GA + R T AC ++ L++ A D E N G T L
Sbjct: 61 VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Query: 147 MIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
+A V+ LL AD++ K G + L E S+ +++LLL HGA ++
Sbjct: 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM 180
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
G + L +A+ G +V L+
Sbjct: 181 YSGSSALHSASGRGLLPLVRTLV 203
Score = 184 bits (471), Expect = 1e-58
Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 15/200 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
TPL +A +V LV A G A ++
Sbjct: 46 RQTPLHLAVITTLPSVVRLLV-TAGASPMAL--------DRHGQTAAHLACEHRSPTCLR 96
Query: 94 FLVEHGAK----VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRH-GHTCLMI 148
L++ A + ++ T L A V+ L+E GAD + + G + L+
Sbjct: 97 ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH 156
Query: 149 ACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYG 207
A +V+ LL A++N + G++ALH + G + +++ L+ GA + + +
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 216
Query: 208 MTPLLAAAVVGHQHIVEYLI 227
TPL+ A I+
Sbjct: 217 DTPLMVARSRRVIDILRGKA 236
Score = 166 bits (422), Expect = 2e-51
Identities = 39/170 (22%), Positives = 68/170 (40%), Gaps = 12/170 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVK---ECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP 90
G T +AC + + L+ D+E +G L A
Sbjct: 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR--------NYDGLTALHVAVNTECQE 130
Query: 91 IVQFLVEHGAKVNSKTRTN-STPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
VQ L+E GA +++ + +PL A + +V+ L++HGA+ G + L A
Sbjct: 131 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190
Query: 150 CYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+G +V+ L+ AD + K+ +T L I+IL+ + A
Sbjct: 191 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 128 bits (325), Expect = 1e-36
Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 11/141 (7%)
Query: 102 VNSKTRTNSTPLRAACFDGHFGVVKYLVE----HGADFEVSNRHGHTCLMIACYKGHYRI 157
TPL A G+ V LV G + ++ N T L +A +
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-----DSYGMTPLL 212
V+ L++ A G TA H E S L+ LL A + + G+T L
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 213 AAAVVGHQHIVEYLI--GLNI 231
A Q V+ L+ G +I
Sbjct: 122 VAVNTECQETVQLLLERGADI 142
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 185 bits (472), Expect = 2e-59
Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 21/205 (10%)
Query: 33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
L A + K++ E L + V+E EG PL A + I
Sbjct: 5 EVGALLEAANQRDTKKVKEILQ-DTTYQVDEVDT--------EGNTPLNIAVHNNDIEIA 55
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSNRHGHTCLMIACY 151
+ L++ GA +N + + +P A G ++ Y+++H D NR+G L+ A
Sbjct: 56 KALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE 115
Query: 152 KGHYRIVKYLLSL-NADMNRKSSKGNTALH-----DCAEAGSIEILKLLLSHGARMDV-- 203
KGH VK LL D++ ++ G TAL +I+KLL+ +GA D
Sbjct: 116 KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA--DQSI 173
Query: 204 -DSYGMTPLLAAAVVGHQHIVEYLI 227
D+ G T + A G+ I + L
Sbjct: 174 KDNSGRTAMDYANQKGYTEISKILA 198
Score = 157 bits (399), Expect = 3e-48
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A N EI + L+ + AD+ + ++ P A A G I+
Sbjct: 39 GNTPLNIAVHNNDIEIAKALI-DRGADINLQNS---ISDS-----PYLYAGAQGRTEILA 89
Query: 94 FLVEHGAK-VNSKTRTNSTPLRAACFDGHFGVVKYLVEHG-ADFEVSNRHGHTCLMIAC- 150
++++H +N R L A GH VK L+E G D + N G+T L+ A
Sbjct: 90 YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149
Query: 151 ----YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
+ + IVK L+ AD + K + G TA+ + G EI K+L +
Sbjct: 150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 134 bits (340), Expect = 2e-39
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
Query: 105 KTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL 164
KT L AA V + L + + + G+T L IA + I K L+
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 165 NADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMTPLLAAAVVGHQH 221
AD+N ++S ++ G EIL +L H D+ + YG L+ AA GH
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLKHAT-PDLNKHNRYGGNALIPAAEKGHID 120
Query: 222 IVEYLI 227
V+ L+
Sbjct: 121 NVKLLL 126
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 186 bits (475), Expect = 4e-59
Identities = 50/203 (24%), Positives = 79/203 (38%), Gaps = 13/203 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G T L +A R + + L+ E AD G PL A +A + Q
Sbjct: 57 GETALHLAARYSRSDAAKRLL-EASADANIQ--------DNMGRTPLHAAVSADAQGVFQ 107
Query: 94 FLVEHGAK-VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
L+ + A ++++ +TPL A G+++ L+ AD + G + L A
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
+ LL A+ + ++++ T L A GS E K+LL H A D+ D P
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR 227
Query: 212 LAAAVVGHQHIVEYLI--GLNIV 232
A H IV L +
Sbjct: 228 DIAQERMHHDIVRLLDLEHHHHH 250
Score = 174 bits (444), Expect = 2e-54
Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 25/215 (11%)
Query: 34 GATPLIMACRNG-------------HKEIVEYLVKECKADVEETGAVMFDHETVEGAPPL 80
G TPL++A +G ++ + + GA + + G L
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ--------GASLHNQTDRTGETAL 61
Query: 81 WCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSN 139
AA + L+E A N + TPL AA GV + L+ + A D +
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
G T L++A +++ L++ +AD+N G +ALH A +++ +LL +GA
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYLI--GLNI 231
D+ ++ TPL AA G + L+ N
Sbjct: 182 NKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 216
Score = 132 bits (334), Expect = 5e-38
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPLI+A R + ++E L+ ADV G L AAA ++
Sbjct: 124 GTTPLILAARLAVEGMLEDLI-NSHADVNAV--------DDLGKSALHWAAAVNNVDAAV 174
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+++GA + + TPL A +G + K L++H A+ ++++ IA +
Sbjct: 175 VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 234
Query: 154 HYRIVKYLLSLNADMNRK 171
H+ IV+ L + +
Sbjct: 235 HHDIVRLLDLEHHHHHHH 252
Score = 117 bits (297), Expect = 2e-32
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 20/149 (13%)
Query: 102 VNSKTRTNSTPLRAACFDGHFG-------------VVKYLVEHGADFE-VSNRHGHTCLM 147
VN + TPL A G V+ + GA ++R G T L
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62
Query: 148 IACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---D 204
+A K LL +AD N + + G T LH A + + ++L+ + A D+
Sbjct: 63 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA-TDLDARM 121
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI--GLNI 231
G TPL+ AA + + ++E LI ++
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADV 150
Score = 86.4 bits (215), Expect = 1e-20
Identities = 31/109 (28%), Positives = 41/109 (37%), Gaps = 15/109 (13%)
Query: 134 DFEVSNRHGHTCLMIACYKGHYR-------------IVKYLLSLNAD-MNRKSSKGNTAL 179
D V G T LMIA G ++ + A N+ G TAL
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 180 HDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
H A + K LL A ++ D+ G TPL AA Q + + LI
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 182 bits (466), Expect = 8e-59
Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 9/171 (5%)
Query: 33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
+ + G + + E + + T EG PL AAA G + +V
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRI-EQENVINHT--------DEEGFTPLMWAAAHGQIAVV 52
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
+FL+++GA + + L AC G+ +VK L++ G D + +G T L+ A +
Sbjct: 53 EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG 112
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
H + VK LL AD ++ G ++ G + +++ SH ++
Sbjct: 113 NHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163
Score = 174 bits (444), Expect = 1e-55
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 1/150 (0%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
+ AA G + + +E +N TPL A G VV++L+++GAD ++
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
+ + L +AC KG+ IVK LL D+N G T L ++ +K+LL G
Sbjct: 66 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125
Query: 199 ARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
A + G + A +G++ + + +
Sbjct: 126 ADPTIETDSGYNSMDLAVALGYRSVQQVIE 155
Score = 149 bits (378), Expect = 1e-45
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL+ A +G +VE+L++ AD + L A + G+ IV+
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQN-GADPQLL--------GKGRESALSLACSKGYTDIVK 86
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L++ G VN TPL A H VK L+E GAD + G+ + +A G
Sbjct: 87 MLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146
Query: 154 HYRIVKYLLSLNADMNRK 171
+ + + + S + +
Sbjct: 147 YRSVQQVIESHLLKLLQN 164
Score = 139 bits (352), Expect = 1e-41
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 109 NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADM 168
NS + G + +E ++ G T LM A G +V++LL AD
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Query: 169 NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
+AL G +I+K+LL G ++ D G TPLL A H V+ L+
Sbjct: 63 QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122
Score = 110 bits (278), Expect = 1e-30
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
+ L +AC G+ +IV+ L+ +C DV E G PL A H+ V+
Sbjct: 69 RESALSLACSKGYTDIVKMLL-DCGVDVNEY--------DWNGGTPLLYAVHGNHVKCVK 119
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNR 140
L+E GA +T + + A G+ V + + H + +
Sbjct: 120 MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 186 bits (474), Expect = 2e-58
Identities = 61/218 (27%), Positives = 93/218 (42%), Gaps = 30/218 (13%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
LI A +N ++V+ L+ E A+V + E G PL A IV+
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLL-EGGANVNFQ-----EEEG--GWTPLHNAVQMSREDIVE 56
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ HGA + + +TP A G ++K + GAD + +G T M A G
Sbjct: 57 LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116
Query: 154 HYRIVKYLLSLNADMNRK----------SSKGNTALHDCAEAGSIEILKLLLSH-GARMD 202
+ +K+L A++N + G TAL D AE G +E+LK+LL GA D
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA--D 174
Query: 203 V---DSYGMTPLLAAAVVGHQ----HIVEYLI--GLNI 231
V D+ G L+ A + I L+ G ++
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212
Score = 184 bits (471), Expect = 5e-58
Identities = 64/213 (30%), Positives = 91/213 (42%), Gaps = 25/213 (11%)
Query: 31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP 90
+ GG TPL A + ++IVE L+ AD GA P AA AG +
Sbjct: 36 EEGGWTPLHNAVQMSREDIVELLL-RHGADPVLR--------KKNGATPFLLAAIAGSVK 86
Query: 91 IVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD----------FEVSNR 140
+++ + GA VN T A G +K+L + GA+ E +
Sbjct: 87 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK 146
Query: 141 HGHTCLMIACYKGHYRIVKYLLS-LNADMNRKSSKGNTALHDCAEAGSI----EILKLLL 195
G T LM A KGH ++K LL + AD+N + G AL + I LLL
Sbjct: 147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 206
Query: 196 SHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
HGA ++V G TPL+ A H +V+ L+
Sbjct: 207 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239
Score = 178 bits (454), Expect = 1e-55
Identities = 57/211 (27%), Positives = 86/211 (40%), Gaps = 26/211 (12%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
GATP ++A G ++++ + ADV E T AA G + ++
Sbjct: 72 GATPFLLAAIAGSVKLLKLFL-SKGADVNECDF---YGFT-----AFMEAAVYGKVKALK 122
Query: 94 FLVEHGAKVNSKTRTNS----------TPLRAACFDGHFGVVKYLVEH-GADFEVSNRHG 142
FL + GA VN + +T T L A GH V+K L++ GAD + G
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182
Query: 143 HTCLMIACYKGHYR----IVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH- 197
L+ A I LL AD+N + +G T L E + +++ LL
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242
Query: 198 GARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
++ DS G T LL A + + I E L
Sbjct: 243 HIEINDTDSDGKTALLLAVELKLKKIAELLC 273
Score = 165 bits (421), Expect = 1e-50
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 15/174 (8%)
Query: 73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS-TPLRAACFDGHFGVVKYLVEH 131
VE L A + +VQ L+E GA VN + TPL A +V+ L+ H
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 132 GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
GAD + ++G T ++A G +++K LS AD+N G TA + A G ++ L
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121
Query: 192 KLLLSHGA-----------RMDVDSYGMTPLLAAAVVGHQHIVEYLI---GLNI 231
K L GA + + G T L+ AA GH +++ L+ G ++
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 175
Score = 161 bits (411), Expect = 4e-49
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 9/174 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETG--AVMFDHETVEGAPPLWCAAAAGHLPI 91
G T + A G + +++L K A+V + GA L AA GH+ +
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163
Query: 92 VQFLVEH-GAKVNSKTRTNSTPLRAACFDGHFG----VVKYLVEHGADFEVSNRHGHTCL 146
++ L++ GA VN+ L A + L++HGAD V G T L
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223
Query: 147 MIACYKGHYRIVKYLLS-LNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
++A K H +V+ LL + ++N S G TAL E +I +LL GA
Sbjct: 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277
Score = 134 bits (340), Expect = 2e-38
Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 13/144 (9%)
Query: 33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH---- 88
GGAT L+ A GH E+++ L+ E ADV G L A +
Sbjct: 147 GGATALMDAAEKGHVEVLKILLDEMGADVNA--------CDNMGRNALIHALLSSDDSDV 198
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH-GADFEVSNRHGHTCLM 147
I L++HGA VN + TPL A H G+V+ L+E + ++ G T L+
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258
Query: 148 IACYKGHYRIVKYLLSLNADMNRK 171
+A +I + L A +
Sbjct: 259 LAVELKLKKIAELLCKRGASTDCG 282
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 183 bits (467), Expect = 4e-58
Identities = 34/218 (15%), Positives = 68/218 (31%), Gaps = 14/218 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G L R ++ + V+ L ++ G +VQ
Sbjct: 5 GQVSLPPGKRTNLRKTGSERI-AHGMRVKFN----PLPLA-----LLLDSSLEGEFDLVQ 54
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
++ + T L A GH +VK+LV+ G + ++ G T L A
Sbjct: 55 RIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN 114
Query: 154 HYRIVKYLLSLNADMNRKSSKGN---TALHDCAEAGSIEILKLLLSHGARMDV-DSYGMT 209
+ ++ K+L+ A + + + E G + + L +M + + +
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIY 174
Query: 210 PLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
L + + +E D +E A
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWAR 212
Score = 158 bits (403), Expect = 2e-48
Identities = 44/197 (22%), Positives = 67/197 (34%), Gaps = 18/197 (9%)
Query: 29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH 88
KF L+ + G ++V+ ++ E D EG L A AGH
Sbjct: 32 KFNPLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLP--------NDEGITALHNAVCAGH 82
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNR---HGHTC 145
IV+FLV+ G VN+ TPL A + V K+LVE GA
Sbjct: 83 TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAAD 142
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-- 203
+G+ + ++L + M + AL D E L + G M +
Sbjct: 143 KCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE---LPMKEGDCMTIIH 199
Query: 204 -DSYGMTPLLAAAVVGH 219
+ A +
Sbjct: 200 REDEDEIEWWWARLNDK 216
Score = 50.3 bits (121), Expect = 8e-08
Identities = 10/114 (8%), Positives = 25/114 (21%), Gaps = 24/114 (21%)
Query: 23 EIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWC 82
+ +T A G+ + ++L + + LW
Sbjct: 128 AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV-QEKMGIM--------NKGVIYALWD 178
Query: 83 AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFE 136
+ ++ G + R +++ D E
Sbjct: 179 YEPQNDDEL---PMKEGDCMTIIHR------------EDEDEIEWWWARLNDKE 217
Score = 33.4 bits (77), Expect = 0.040
Identities = 4/30 (13%), Positives = 8/30 (26%), Gaps = 2/30 (6%)
Query: 204 DSYGMTPLLAAAVVGHQHIVEYLI--GLNI 231
+ G L + I G+ +
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV 31
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 181 bits (463), Expect = 1e-57
Identities = 50/196 (25%), Positives = 78/196 (39%), Gaps = 11/196 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G T L +A R + + L+ E AD G PL A +A + Q
Sbjct: 25 GETALHLAARYSRSDAAKRLL-EASADANIQ--------DNMGRTPLHAAVSADAQGVFQ 75
Query: 94 FLVEHGAK-VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
L+ + A ++++ +TPL A G+++ L+ AD + G + L A
Sbjct: 76 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 135
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
+ LL A+ + ++++ T L A GS E K+LL H A D+ D P
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR 195
Query: 212 LAAAVVGHQHIVEYLI 227
A H IV L
Sbjct: 196 DIAQERMHHDIVRLLD 211
Score = 166 bits (422), Expect = 2e-51
Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 10/185 (5%)
Query: 45 GHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNS 104
++ + + GA + + G L AA + L+E A N
Sbjct: 2 DAPAVISDFIYQ--------GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI 53
Query: 105 KTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSNRHGHTCLMIACYKGHYRIVKYLLS 163
+ TPL AA GV + L+ + A D + G T L++A +++ L++
Sbjct: 54 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113
Query: 164 LNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHI 222
+AD+N G +ALH A +++ +LL +GA D+ ++ TPL AA G
Sbjct: 114 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYET 173
Query: 223 VEYLI 227
+ L+
Sbjct: 174 AKVLL 178
Score = 162 bits (412), Expect = 5e-50
Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 8/166 (4%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL A + + + L++ D++ +G PL AA +++
Sbjct: 58 GRTPLHAAVSADAQGVFQILIRNRATDLDAR--------MHDGTTPLILAARLAVEGMLE 109
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ A VN+ + L A + L+++GA+ ++ N T L +A +G
Sbjct: 110 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 169
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
Y K LL A+ + E +I++LL +
Sbjct: 170 SYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215
Score = 139 bits (353), Expect = 4e-41
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 5/151 (3%)
Query: 86 AGHLPIVQFLVEHGAKV-NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHT 144
++ + GA + N RT T L A K L+E AD + + G T
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 145 CLMIACYKGHYRIVKYLLSLNA-DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
L A + + L+ A D++ + G T L A +L+ L++ A ++
Sbjct: 61 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120
Query: 204 -DSYGMTPLLAAAVVGHQHIVEYLI--GLNI 231
D G + L AA V + L+ G N
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANK 151
Score = 131 bits (333), Expect = 4e-38
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 16/147 (10%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPLI+A R + ++E L+ ADV G L AAA ++
Sbjct: 92 GTTPLILAARLAVEGMLEDLI-NSHADVNAV--------DDLGKSALHWAAAVNNVDAAV 142
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+++GA + + TPL A +G + K L++H A+ ++++ IA +
Sbjct: 143 VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 202
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALH 180
H+ IV+ L N + LH
Sbjct: 203 HHDIVRLLDEYNLV-------RSPQLH 222
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 178 bits (454), Expect = 2e-55
Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 20/202 (9%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
PL A +IV+ L+ D + +G L+ A +G++ V+
Sbjct: 62 NEFPLHQAATLEDTKIVKILLFS-GLDDSQF--------DDKGNTALYYAVDSGNMQTVK 112
Query: 94 FLVEHGAKVNSKTRTN-STPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
V+ ++ +T T A +V Y + +C+ I
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA-ILLSCIHITIKN 171
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNT-ALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPL 211
GH ++ LL N +S + + IE+L+ L + ++ +
Sbjct: 172 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI--NIY----SAN 225
Query: 212 LAAAVVGHQHIVEYLI--GLNI 231
L ++ I + +I +
Sbjct: 226 LENVLLDDAEIAKMIIEKHVEY 247
Score = 171 bits (437), Expect = 6e-53
Identities = 36/195 (18%), Positives = 66/195 (33%), Gaps = 15/195 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G + + ++ + D + V G + A A ++ +V
Sbjct: 1 GMDLSRIN--TWKSKQLKSFLS--SKDTFKA--------DVHGHSASYYAIADNNVRLVC 48
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ GA N N PL A +VK L+ G D + G+T L A G
Sbjct: 49 TLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSG 106
Query: 154 HYRIVKYLLSLNADMNRKSSKG-NTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLL 212
+ + VK + N + G T+ + + I+ LS + ++ +
Sbjct: 107 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIH 166
Query: 213 AAAVVGHQHIVEYLI 227
GH ++ L+
Sbjct: 167 ITIKNGHVDMMILLL 181
Score = 156 bits (396), Expect = 8e-47
Identities = 25/202 (12%), Positives = 62/202 (30%), Gaps = 20/202 (9%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G T L A +G+ + V+ VK+ + G +T + A + IV
Sbjct: 95 GNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGK--TGWKT-----SFYHAVMLNDVSIVS 146
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHT-CLMIACYK 152
+ + + + +GH ++ L+++ +N + +A
Sbjct: 147 YFLSEIP-STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN 205
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
+++ L + + +A + EI K+++ +
Sbjct: 206 KDIEMLQALFKYDIN-------IYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258
Query: 212 LAAAVVGHQHIVEYLIGLNIVS 233
+ I+ L ++
Sbjct: 259 VKNN--KLDEIISKNKELRLMY 278
Score = 135 bits (342), Expect = 8e-39
Identities = 19/159 (11%), Positives = 48/159 (30%), Gaps = 18/159 (11%)
Query: 31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP 90
K G T A IV Y + E + + GH+
Sbjct: 126 KTGWKTSFYHAVMLNDVSIVSYFLSE--------IPS--TFDLAILLSCIHITIKNGHVD 175
Query: 91 IVQFLVEHGAKVNSKTRTNSTP-LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
++ L+++ N+ P ++ A + +++ L ++ + ++ +
Sbjct: 176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-------IYSANLEN 228
Query: 150 CYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI 188
I K ++ + + S + + + I
Sbjct: 229 VLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEI 267
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 174 bits (443), Expect = 3e-55
Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 13/186 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
+ CR G+ V + + D+ + G PL A G +V+
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQG--------DDHGFSPLHWACREGRSAVVE 56
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ GA++N R + TPL A GH +V+ L+++ AD N HG+ L AC+ G
Sbjct: 57 MLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG 116
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLA 213
++ + L++ A ++ + G + + + G +++ P
Sbjct: 117 QDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ--NLNR---IPYKD 171
Query: 214 AAVVGH 219
G
Sbjct: 172 TFWKGT 177
Score = 161 bits (411), Expect = 2e-50
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGA-KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
E ++ G+ V+ +++ +N +PL AC +G VV+ L+ GA
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63
Query: 134 DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL 193
V NR T L +A GH IV+ LL AD+N + GN LH G ++ +
Sbjct: 64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAED 123
Query: 194 LLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
L+++GA + + + YG P+ A + + E
Sbjct: 124 LVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158
Score = 108 bits (272), Expect = 1e-29
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 15/124 (12%)
Query: 33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
G TPL +A +GH++IV+ L++ KAD+ G PL A G +
Sbjct: 71 GDDTPLHLAASHGHRDIVQKLLQ-YKADINAV--------NEHGNVPLHYACFWGQDQVA 121
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
+ LV +GA V+ + P+ A + + + G + +K
Sbjct: 122 EDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL------NRIPYKDTFWK 175
Query: 153 GHYR 156
G R
Sbjct: 176 GTTR 179
Score = 61.3 bits (150), Expect = 6e-12
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 172 SSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMTPLLAAAVVGHQHIVEYLI 227
S + + G+ ++L L + D+ D +G +PL A G +VE LI
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTE-NDLNQGDDHGFSPLHWACREGRSAVVEMLI 59
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 175 bits (447), Expect = 4e-55
Identities = 51/203 (25%), Positives = 77/203 (37%), Gaps = 19/203 (9%)
Query: 34 GATPLIMACRNGHK-EIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
PL AC ++ E L + + + + +G PL + + I
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSK-PSLLLQK--------DQDGRIPLHWSVSFQAHEIT 52
Query: 93 QFLVEHGAKVNSKTRTN---STPLRAACFDGHFGVVKYLVEH--GADFEVSNRHGHTCLM 147
FL+ VN + TP AC G+ VVK L + D G TCL
Sbjct: 53 SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112
Query: 148 IACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---D 204
+A K + + ++L+ A + K LH A GS+++++LL G V D
Sbjct: 113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS-AVNWQD 171
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
G TPL A GH L+
Sbjct: 172 KQGWTPLFHALAEGHGDAAVLLV 194
Score = 175 bits (446), Expect = 5e-55
Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 14/199 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G PL + EI +L+ + +V D+ G P A + G+L +V+
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSK-MENVNLD-----DYPDDSGWTPFHIACSVGNLEVVK 89
Query: 94 FLVEH--GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACY 151
L + +N T T L A F V ++L+E+GA + ++ L A
Sbjct: 90 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149
Query: 152 KGHYRIVKYLLSL-NADMNRKSSKGNTALHDCAEAGSIEILKLLLS-HGARMDV-DSYGM 208
G ++++ L L + +N + +G T L G + LL+ +GA D+ D+ G
Sbjct: 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA 209
Query: 209 TPLLAAAVVGHQHIVEYLI 227
A ++ + ++ +
Sbjct: 210 KAEDVAL---NEQVKKFFL 225
Score = 156 bits (398), Expect = 9e-48
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLV-KECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
G TP +AC G+ E+V+ L + K D+ + T +G L A +
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI--------TNQGVTCLHLAVGKKWFEVS 123
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG-ADFEVSNRHGHTCLMIACY 151
QFL+E+GA V K + N PL A G +++ L G + ++ G T L A
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 152 KGHYRIVKYLLSLN-ADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
+GH L+ A+ + +KG A A + ++ K L++
Sbjct: 184 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV---ALNEQVKKFFLNN 227
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 174 bits (444), Expect = 8e-55
Identities = 43/201 (21%), Positives = 79/201 (39%), Gaps = 16/201 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G + A + L E + D+ T W + G ++
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIE-EGDIIY--------ITDMSDTNWWKGTSKGRTGLI- 61
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
V + + PL A G+ ++ +++ ++ G T L AC+ G
Sbjct: 62 ----PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG 117
Query: 154 HYRIVKYLLS-LNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
H IV+ L + N ++N+++ G+TALH A G +I++LLL+ GAR D+ +
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF 177
Query: 212 LAAAVVGHQHIVEYLIGLNIV 232
A +++ G + V
Sbjct: 178 DMATNAACASLLKKKQGTDAV 198
Score = 163 bits (415), Expect = 2e-50
Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 16/190 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
T G ++ +A+ + PL AA G+L ++
Sbjct: 45 SDTNWWKGTSKGRTGLIPSNYVAEQAESIDN--------------PLHEAAKRGNLSWLR 90
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH-GADFEVSNRHGHTCLMIACYK 152
+++ VN + ST L AC GH +V+ L + N+ G T L A +K
Sbjct: 91 ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPL 211
G+ IV+ LL+ A + ++ + A A +LK A ++
Sbjct: 151 GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210
Query: 212 LAAAVVGHQH 221
+ + H H
Sbjct: 211 EDSDLEHHHH 220
Score = 104 bits (262), Expect = 1e-27
Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 6/126 (4%)
Query: 103 NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLL 162
+ + A + L D T KG ++
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPS-- 63
Query: 163 SLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQH 221
+ ++ + LH+ A+ G++ L+ L + ++ D G T L A GH+
Sbjct: 64 ---NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD 120
Query: 222 IVEYLI 227
IVE L
Sbjct: 121 IVEMLF 126
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 172 bits (440), Expect = 1e-54
Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 16/195 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G + + +++L + + T PL A G +
Sbjct: 8 GEIVEKIKDEKSINQNLDFL-RNYRDSYNRT--------------PLMVACMLGMENAID 52
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
LVE+ K+ K ST L A + G+ + L+ G++ + G T LM + G
Sbjct: 53 KLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFG 112
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
+ + +LL A++N ++ +G T L ++ G EI+K LL GA + D G+T
Sbjct: 113 YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEA 172
Query: 213 AAAVVGHQHIVEYLI 227
+A + G Q +++
Sbjct: 173 SARIFGRQEVIKIFT 187
Score = 165 bits (420), Expect = 1e-51
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
TPL++AC G + ++ LV E +E+ +EG+ L A L I +
Sbjct: 35 NRTPLMVACMLGMENAIDKLV-ENFDKLEDK--------DIEGSTALIWAVKNNRLGIAE 85
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ G+ VN+K + TPL + G+ + +L+EHGA+ N G T L++A G
Sbjct: 86 KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG 145
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
IVK LL L AD++ + G TA G E++K+
Sbjct: 146 RSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 50.1 bits (121), Expect = 9e-08
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 169 NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI- 227
+ G E + L L ++ DSY TPL+ A ++G ++ ++ L+
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLRNYR-----DSYNRTPLMVACMLGMENAIDKLVE 56
Query: 228 -GLNI 231
+
Sbjct: 57 NFDKL 61
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 178 bits (454), Expect = 1e-54
Identities = 48/210 (22%), Positives = 78/210 (37%), Gaps = 25/210 (11%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
TPL++A + +V YL+K AD L AAA ++
Sbjct: 166 ENTPLMLAVLARRRRLVAYLMKA-GADPTI--------YNKSERSALHQAAANRDFGMMV 216
Query: 94 FLVEH---GAKVNSKTRTNSTPLRAACFDGHFG---VVKYLVEHGAD--------FEVSN 139
+++ + R T L + K LVE GA +
Sbjct: 217 YMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK 276
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLN-ADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
G T L A + IVKYL+ ++ +++ G T + A+ G IE++ L+ G
Sbjct: 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 336
Query: 199 ARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
A ++ VD+ T A H +IV+
Sbjct: 337 ASVEAVDATDHTARQLAQANNHHNIVDIFD 366
Score = 174 bits (443), Expect = 7e-53
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 17/210 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
T L N E E L+ + GA + + PL A A +V
Sbjct: 125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA-DVNAMDCDENTPLMLAVLARRRRLVA 183
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH---GADFEVSNRHGHTCLMIAC 150
+L++ GA ++ + L A + FG++ Y++ D E +R+G T LMI
Sbjct: 184 YLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 243
Query: 151 YKGHY---RIVKYLLSLNADMNR--------KSSKGNTALHDCAEAGSIEILKLLLSH-G 198
+ K L+ A ++ + KG TALH A+ ++ I+K L+ G
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303
Query: 199 ARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
+ D D G TP++ AA G +V YLI
Sbjct: 304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLI 333
Score = 167 bits (425), Expect = 3e-50
Identities = 50/217 (23%), Positives = 78/217 (35%), Gaps = 34/217 (15%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
L G I E + +E ++ + L A+ +
Sbjct: 94 SPIKLHTEA-AGSYAITEPITRE-SVNIIDPR---------HNRTVLHWIASNSSAEKSE 142
Query: 94 FLVEH--------GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTC 145
L+ H GA VN+ +TPL A +V YL++ GAD + N+ +
Sbjct: 143 DLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA 202
Query: 146 LMIACYKGHYRIVKYLLS---LNADMNRKSSKGNTALHDCAEAGS---IEILKLLLSHGA 199
L A + ++ Y+L+ L D+ G TAL A + KLL+ GA
Sbjct: 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA 262
Query: 200 ---------RMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
+ G T L AA V + IV+YL+
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV 299
Score = 166 bits (423), Expect = 6e-50
Identities = 41/216 (18%), Positives = 68/216 (31%), Gaps = 28/216 (12%)
Query: 33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
P NG+ + ++ E E L AA G I
Sbjct: 60 YSLYPNPQGYGNGNDFLGDFNHT-NLQIPTE--------PEPESPIKLHTEAA-GSYAIT 109
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVV--------KYLVEHGADFEVSNRHGHT 144
+ + + R N T L + K + GAD + +T
Sbjct: 110 EPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT 168
Query: 145 CLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH---GARM 201
LM+A R+V YL+ AD + +ALH A ++ +L+ +
Sbjct: 169 PLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 228
Query: 202 DV-DSYGMTPLLAAAVVGHQ---HIVEYLI--GLNI 231
+ D GMT L+ A + + L+ G +
Sbjct: 229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264
Score = 153 bits (389), Expect = 6e-45
Identities = 28/205 (13%), Positives = 56/205 (27%), Gaps = 33/205 (16%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
L+ A +G+ + ++ P G+ +
Sbjct: 37 SQHSLLEASYDGYIKRQRNELQH------------------YSLYPNPQGYGNGNDFLGD 78
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
F + + L G + + + + + + RH T L
Sbjct: 79 FNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVN-IIDPRHNRTVLHWIASNS 136
Query: 154 HYRIV--------KYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-- 203
K ++ AD+N NT L A ++ L+ GA D
Sbjct: 137 SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA--DPTI 194
Query: 204 -DSYGMTPLLAAAVVGHQHIVEYLI 227
+ + L AA ++ Y++
Sbjct: 195 YNKSERSALHQAAANRDFGMMVYML 219
Score = 152 bits (387), Expect = 1e-44
Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 24/185 (12%)
Query: 34 GATPLIMACRNGHKEIVEYLV--KECKADVEETGAVMFDHETVEGAPPLWCAAAAGH--- 88
+ L A N ++ Y++ + K D+EE G L A
Sbjct: 199 ERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL--------DRNGMTALMIVAHNEGRDQ 250
Query: 89 LPIVQFLVEHGAKVNSKTRTNS--------TPLRAACFDGHFGVVKYLVEH-GADFEVSN 139
+ + LVE GAKV+ T L A + +VKYLV G++ + +
Sbjct: 251 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD 310
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
G T +M+A +G +V YL+ A + + +TA I+ +
Sbjct: 311 EDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370
Query: 200 RMDVD 204
+ +
Sbjct: 371 --ERE 373
Score = 103 bits (260), Expect = 3e-26
Identities = 19/129 (14%), Positives = 37/129 (28%), Gaps = 10/129 (7%)
Query: 99 GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV 158
K + ++ L A +DG+ + ++H + G+ +
Sbjct: 27 NRKNHQSITSSQHSLLEASYDGYIKRQRNELQH---------YSLYPNPQGYGNGNDFLG 77
Query: 159 KYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVG 218
+ + + LH AGS I + + + + T L A
Sbjct: 78 DFNHTNLQIPTEPEPESPIKLH-TEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNS 136
Query: 219 HQHIVEYLI 227
E LI
Sbjct: 137 SAEKSEDLI 145
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 171 bits (437), Expect = 5e-53
Identities = 44/210 (20%), Positives = 62/210 (29%), Gaps = 25/210 (11%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G T L +A G VE L A V T L A
Sbjct: 45 GQTALHLAAILGEASTVEKLYAA-GAGVLVAE---RGGHT-----ALHLACRVRAHTCAC 95
Query: 94 FLVEHGAKVNSKTRTNSTP--------------LRAACFDGHFGVVKYLVEHGADFEVSN 139
L++ + + + E N
Sbjct: 96 VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKLLLSHG 198
GHT L +A +V+ L AD+N+ G T LH EA + +L+LLL G
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
Query: 199 ARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
A G TPL +A + + + L
Sbjct: 216 ADPTARMYGGRTPLGSALLRPNPILARLLR 245
Score = 167 bits (426), Expect = 2e-51
Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 9/201 (4%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMF-----DHETVEGAPPLWCAAAAGH 88
G T L +ACR L+ + + + + D P +
Sbjct: 78 GHTALHLACRVRAHTCACVLL-QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP 136
Query: 89 LP-IVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF-EVSNRHGHTCL 146
+ ++ ++ TPL A +V+ L + GAD + G T L
Sbjct: 137 ENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
Query: 147 MIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DS 205
+A +++ LL AD + G T L + + +LL +HGA
Sbjct: 197 HLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGG 256
Query: 206 YGMTPLLAAAVVGHQHIVEYL 226
++P ++ +
Sbjct: 257 DKLSPCSSSGSDSDSDNRDEG 277
Score = 165 bits (419), Expect = 3e-50
Identities = 43/218 (19%), Positives = 69/218 (31%), Gaps = 28/218 (12%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G T L +A + H+ +++L+ A E D + G L AA G V+
Sbjct: 9 GDTALHLAVIHQHEPFLDFLL-GFSAGHEYL-----DLQNDLGQTALHLAAILGEASTVE 62
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG----------- 142
L GA V R T L AC L++
Sbjct: 63 KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122
Query: 143 ---HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
+ + + ++ G+T LH E+++LL GA
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182
Query: 200 RMDVDS----YGMTPLLAAAVVGHQHIVEYLI--GLNI 231
D++ G TPL A ++E L+ G +
Sbjct: 183 --DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
Score = 146 bits (372), Expect = 3e-43
Identities = 40/177 (22%), Positives = 58/177 (32%), Gaps = 18/177 (10%)
Query: 69 FDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAK---VNSKTRTNSTPLRAACFDGHFGVV 125
F + T +G L A H P + FL+ A ++ + T L A G V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 126 KYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNT-------- 177
+ L GA V+ R GHT L +AC + LL R +S
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 178 ------ALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
A D E +++ + G TPL A + +V L
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR 178
Score = 136 bits (344), Expect = 4e-39
Identities = 29/169 (17%), Positives = 50/169 (29%), Gaps = 10/169 (5%)
Query: 31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP 90
A + + N E + +E +G PL A
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDW-RLQLEAE--------NYDGHTPLHVAVIHKDAE 172
Query: 91 IVQFLVEHGAKVNSKTRTN-STPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
+V+ L + GA +N T TPL A V++ L++ GAD G T L A
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232
Query: 150 CYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
+ + + + L + A + + +
Sbjct: 233 LLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 95.3 bits (238), Expect = 1e-23
Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 4/116 (3%)
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADM---NRKSSKGNTALHDCAEAGSIEIL 191
F G T L +A H + +LL +A + ++ G TALH A G +
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 192 KLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGA 246
+ L + GA + V + G T L A V L+ ++ D
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117
Score = 84.9 bits (211), Expect = 8e-20
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 9/104 (8%)
Query: 29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH 88
G TPL +A ++E L+ + AD G PL A +
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLL-KAGADPTAR--------MYGGRTPLGSALLRPN 237
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
+ + L HGA +P ++ D E+
Sbjct: 238 PILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 168 bits (429), Expect = 2e-52
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 21/206 (10%)
Query: 34 GATPLIMACRNGHK----EIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHL 89
G + L +A + K E++ + + A + +T PL A
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGD-LAFLNFQN---NLQQT-----PLHLAVITNQP 58
Query: 90 PIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF------EVSNRHGH 143
I + L+ G + +TPL AC G V L + + +N +GH
Sbjct: 59 EIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 118
Query: 144 TCLMIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKLLLSHGARMD 202
TCL +A G+ IV+ L+SL AD+N + G TALH + + +++ LLL GA ++
Sbjct: 119 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178
Query: 203 -VDSYGMTPLLAAAVVGHQHIVEYLI 227
V G +P I + L
Sbjct: 179 RVTYQGYSPYQLTWGRPSTRIQQQLG 204
Score = 147 bits (374), Expect = 4e-44
Identities = 45/199 (22%), Positives = 64/199 (32%), Gaps = 17/199 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
TPL +A EI E L+ D E G PL A G L V
Sbjct: 45 QQTPLHLAVITNQPEIAEALLG-AGCDPELR--------DFRGNTPLHLACEQGCLASVG 95
Query: 94 FLVEHGA------KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF-EVSNRHGHTCL 146
L + + + T L A G+ G+V+ LV GAD +G T L
Sbjct: 96 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 155
Query: 147 MIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA-RMDVDS 205
+A + +V LL AD+NR + +G + S I + L + +
Sbjct: 156 HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 215
Query: 206 YGMTPLLAAAVVGHQHIVE 224
E
Sbjct: 216 ESEDEESYDTESEFTEFTE 234
Score = 81.1 bits (201), Expect = 9e-19
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 139 NRHGHTCLMIACYKGH----YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
G + L +A +++ + A +N +++ T LH EI + L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 195 LSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
L G ++ D G TPL A G V L
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 98
Score = 67.6 bits (166), Expect = 9e-14
Identities = 13/126 (10%), Positives = 26/126 (20%), Gaps = 42/126 (33%)
Query: 29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH 88
+ G T L +A + ++V
Sbjct: 146 QEPCNGRTALHLAVDLQNPDLVS------------------------------------- 168
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMI 148
L++ GA VN T +P + + + L + +
Sbjct: 169 -----LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESY 223
Query: 149 ACYKGH 154
Sbjct: 224 DTESEF 229
Score = 56.8 bits (138), Expect = 6e-10
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 171 KSSKGNTALHDCAEAGS----IEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEY 225
+ G++ LH +E+++ + A ++ ++ TPL A + I E
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 226 LI 227
L+
Sbjct: 64 LL 65
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 172 bits (439), Expect = 2e-52
Identities = 39/210 (18%), Positives = 68/210 (32%), Gaps = 26/210 (12%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
+ +A R G + V L+ E G L A G + +
Sbjct: 20 NMEKIHVAARKGQTDEVRRLI-ETGVSPTIQ--------NRFGCTALHLACKFGCVDTAK 70
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
+L G + P+ A +V LVE + G +
Sbjct: 71 YLASVGEVHSLW--HGQKPIHLAVMANKTDLVVALVEGAKER------GQMPESLLNECD 122
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG--SIEILKLLLSHGARMDV-DSYGMTP 210
+ + + K KG TALH C G +E++K+L+ GA D TP
Sbjct: 123 EREVNE------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETP 176
Query: 211 LLAAAVVGHQHIVEYLIGLNIVSRKEKIDA 240
L+ A ++ ++ ++ ++D
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDY 206
Score = 171 bits (437), Expect = 4e-52
Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 30/215 (13%)
Query: 34 GATPLIMACRNG--HKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPI 91
G T L G + E+++ LV+ A PL A +
Sbjct: 138 GQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDK--------ADETPLMRAMEFRNREA 188
Query: 92 VQFLVE-----HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
+ +++ +++ + ++ L A V VE G D + + L
Sbjct: 189 LDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL 248
Query: 147 MIACYKGHYRIVKYLLSLNADMNRKSSK-------------GNTALHDCAEAGSIEILKL 193
++ + K LL ++ + A+ E+L+L
Sbjct: 249 YLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQL 308
Query: 194 LLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
L + + G + + +
Sbjct: 309 LQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKL 343
Score = 161 bits (409), Expect = 7e-48
Identities = 25/199 (12%), Positives = 59/199 (29%), Gaps = 26/199 (13%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECK----ADVEETGAVMFDHETVEGAPPLWCAAAAGHL 89
TPL+ A ++E ++ ++ ++ +G L A
Sbjct: 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA--------NKQGNSHLHWAILINWE 224
Query: 90 PIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGH------ 143
+ VE G VN + ++ PL + + K L++ F + H
Sbjct: 225 DVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL 284
Query: 144 -------TCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLS 196
+ A +++ L ++ R + G + + + ++ L+
Sbjct: 285 PDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA 344
Query: 197 HGARMDV-DSYGMTPLLAA 214
A + +
Sbjct: 345 PSAPVRTRSRSRARSSAVS 363
Score = 158 bits (401), Expect = 8e-47
Identities = 41/202 (20%), Positives = 65/202 (32%), Gaps = 31/202 (15%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G T L +AC+ G + +YL G H G P+ A A +V
Sbjct: 53 GCTALHLACKFGCVDTAKYLASV--------GE---VHSLWHGQKPIHLAVMANKTDLVV 101
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
LVE + P V + V + G T L G
Sbjct: 102 ALVEGAKER------GQMPESLLNECDEREVNEIGS------HVKHCKGQTALHWCVGLG 149
Query: 154 --HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL-----SHGARMDV-DS 205
+ ++K L+ L A K T L E + E L L++ R+D +
Sbjct: 150 PEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK 209
Query: 206 YGMTPLLAAAVVGHQHIVEYLI 227
G + L A ++ + + +
Sbjct: 210 QGNSHLHWAILINWEDVAMRFV 231
Score = 128 bits (324), Expect = 2e-35
Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 7/130 (5%)
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
N + A G V+ L+E G + NR G T L +AC G
Sbjct: 9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDT 68
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVV 217
KYL S+ + G +H A +++ L+ G P
Sbjct: 69 AKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKE-----RGQMPESLLNEC 121
Query: 218 GHQHIVEYLI 227
+ + E
Sbjct: 122 DEREVNEIGS 131
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 166 bits (423), Expect = 2e-52
Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 9/164 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
L+ A R G + V L+ ADV G PL AA GHL IV+
Sbjct: 14 LGKKLLEAARAGRDDEVRILM-ANGADVNAE--------DASGWTPLHLAAFNGHLEIVE 64
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+++GA VN+ TPLR A GH +V+ L+++GAD ++ GHT L +A G
Sbjct: 65 VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG 124
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
H IV+ LL AD+N + G TA + G+ ++ ++L
Sbjct: 125 HLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 164 bits (419), Expect = 9e-52
Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
L AA AG V+ L+ +GA VN++ + TPL A F+GH +V+ L+++GAD
Sbjct: 17 KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
+ G T L +A GH IV+ LL AD+N +G+T LH A G +EI+++LL +G
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 199 ARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
A ++ D +G T + G++ + E L LN
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 134 bits (341), Expect = 6e-40
Identities = 49/138 (35%), Positives = 66/138 (47%), Gaps = 12/138 (8%)
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
HG+ + L A G V+ L+ +GAD + G T L +A +
Sbjct: 5 HHHHHHGSDLG-------KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN 57
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMT 209
GH IV+ LL AD+N G T L A G +EI+++LL +GA DV D G T
Sbjct: 58 GHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA--DVNANDMEGHT 115
Query: 210 PLLAAAVVGHQHIVEYLI 227
PL AA+ GH IVE L+
Sbjct: 116 PLHLAAMFGHLEIVEVLL 133
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 170 bits (433), Expect = 3e-52
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 18/204 (8%)
Query: 31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP 90
KF + AC +G E V L++ AD+ V+G L A ++
Sbjct: 37 KFDDGAVFLAACSSGDTEEVLRLLER-GADINYA--------NVDGLTALHQACIDDNVD 87
Query: 91 IVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC 150
+V+FLVE+GA +N PL AA G+ + +YL+ GA N G T L IA
Sbjct: 88 MVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAE 147
Query: 151 YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMT 209
+ +++ +NR+ A + + + L S G T
Sbjct: 148 EEAMEELLQNE------VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT 201
Query: 210 PLLAAAVVGHQHIVEYLI--GLNI 231
L AA G+ +++ LI ++
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARYDV 225
Score = 166 bits (423), Expect = 1e-50
Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 17/203 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
+ G + +E V + + + +GA L A ++G V
Sbjct: 8 QKRNEQLKRWIGSETDLEPPVVK-RKKTKVK--------FDDGAVFLA-ACSSGDTEEVL 57
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+E GA +N T L AC D + +VK+LVE+GA+ + G L A G
Sbjct: 58 RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLA 213
+ I +YL+S A + +S+G+T L E E+L+ ++
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ-----GVDIEAARKE 172
Query: 214 AAVVGHQHIVEYLI--GLNIVSR 234
+ + ++L +N V
Sbjct: 173 EERIMLRDARQWLNSGHINDVRH 195
Score = 161 bits (409), Expect = 1e-48
Identities = 48/208 (23%), Positives = 76/208 (36%), Gaps = 20/208 (9%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G PL A G+ +I EYL+ + A V EG PL A ++Q
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQ-GAHVGA--------VNSEGDTPLDIAEEEAMEELLQ 156
Query: 94 FLV-EHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
V G + + ++L + + G T L +A K
Sbjct: 157 NEVNRQGVDIE-------AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK 209
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPL 211
G+ ++K L+ D+N K G T LH A G E ++L+ + M+ V+ G T
Sbjct: 210 GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269
Query: 212 LAAAVVGHQHIVEYLI--GLNIVSRKEK 237
A ++ E L ++EK
Sbjct: 270 DVADEDILGYLEELQKKQNLLHSEKREK 297
Score = 153 bits (389), Expect = 1e-45
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 2/159 (1%)
Query: 70 DHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV 129
+ G ++ V K K + AAC G V L+
Sbjct: 2 KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFD-DGAVFLAACSSGDTEEVLRLL 60
Query: 130 EHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE 189
E GAD +N G T L AC + +VK+L+ A++N+ ++G LH A G ++
Sbjct: 61 ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD 120
Query: 190 ILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
I + L+S GA + V+S G TPL A + +++ +
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159
Score = 62.1 bits (152), Expect = 1e-11
Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Query: 168 MNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
M +K GS L+ + + V LAA G V L+
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60
Query: 228 --GLNI 231
G +I
Sbjct: 61 ERGADI 66
Score = 52.9 bits (128), Expect = 2e-08
Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 9/77 (11%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL A G +E LV E D+E G A + +
Sbjct: 232 GWTPLHAAAHWGKEEACRILV-ENLCDMEAV--------NKVGQTAFDVADEDILGYLEE 282
Query: 94 FLVEHGAKVNSKTRTNS 110
+ + K S
Sbjct: 283 LQKKQNLLHSEKREKKS 299
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 171 bits (436), Expect = 5e-52
Identities = 49/232 (21%), Positives = 78/232 (33%), Gaps = 36/232 (15%)
Query: 27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA 86
V ++ L A ++++ L + + + PL AA
Sbjct: 18 VLTGEYKKDELLEAARSGNEEKLMALLTP-LNVNCHAS--------DGRKSTPLHLAAGY 68
Query: 87 GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
+ IVQ L++HGA V++K + PL AC GH+ V + L++HGA + T L
Sbjct: 69 NRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPL 128
Query: 147 MIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV--- 203
A K + LLS AD + G +A+ E L + +
Sbjct: 129 HEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAARE 188
Query: 204 -------------------DSYGMTPLLAAAVVGHQH---IVEYLI--GLNI 231
T L A H + E L+ G N+
Sbjct: 189 ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240
Score = 170 bits (433), Expect = 1e-51
Identities = 51/219 (23%), Positives = 80/219 (36%), Gaps = 34/219 (15%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G PL AC GH E+ E L+K A V + + PL AA+ + +
Sbjct: 91 GLVPLHNACSYGHYEVTELLLK-HGACV--------NAMDLWQFTPLHEAASKNRVEVCS 141
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVK---------------------YLVEHG 132
L+ HGA + + A + +
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALE 201
Query: 133 ADFEVSNRHGHTCLMIACYKGHYR---IVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE 189
+ T L A H + + + LL A++N K+ T LH AE +
Sbjct: 202 IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND 261
Query: 190 ILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
++++L HGA+M+ +DS G T L AA+ GH L+
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300
Score = 164 bits (417), Expect = 3e-49
Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 9/174 (5%)
Query: 78 PPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEV 137
L A + ++ L ++ STPL A +V+ L++HGAD
Sbjct: 27 ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86
Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
++ G L AC GHY + + LL A +N T LH+ A +E+ LLLSH
Sbjct: 87 KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146
Query: 198 GARMDV---DSYGMTPLLAAAVVGHQHIVEYLIG----LNIVSRKEKIDALELL 244
GA D + +G + + A + + Y L + + L
Sbjct: 147 GA--DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL 198
Score = 158 bits (401), Expect = 7e-47
Identities = 46/204 (22%), Positives = 75/204 (36%), Gaps = 32/204 (15%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G + + MA +E + Y K G L AA L V+
Sbjct: 157 GKSAVDMAPTPELRERLTYEFK--------------------GHSLLQ-AAREADLAKVK 195
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFG---VVKYLVEHGADFEVSNRHGHTCLMIAC 150
+ + +++ T L A H V + L+ GA+ N+ T L +A
Sbjct: 196 KTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAA 255
Query: 151 YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMT 209
+ H +++ L A MN S G TALH A AG ++ +LLLS+G+ + G T
Sbjct: 256 ERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT 315
Query: 210 PLLAAAVVGHQHIVEYLI--GLNI 231
V+ ++ +
Sbjct: 316 AAQMGN-----EAVQQILSESTPM 334
Score = 141 bits (357), Expect = 2e-40
Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 2/139 (1%)
Query: 91 IVQFLVEHGAKVNSKTRTNSTPL-RAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
L + AK L AA ++ L + S+ T L +A
Sbjct: 6 SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA 65
Query: 150 CYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGM 208
RIV+ LL AD++ K G LH+ G E+ +LLL HGA ++ D +
Sbjct: 66 AGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF 125
Query: 209 TPLLAAAVVGHQHIVEYLI 227
TPL AA + L+
Sbjct: 126 TPLHEAASKNRVEVCSLLL 144
Score = 70.2 bits (173), Expect = 3e-14
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 153 GHY-RIVKYLLSLNADMNRKSSKGNTALHDCAEAG-SIEILKLLLSHGARMDV---DSYG 207
G + + L +A L + A +G +++ LL + D
Sbjct: 1 GEFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV--NCHASDGRK 58
Query: 208 MTPLLAAAVVGHQHIVEYLI 227
TPL AA IV+ L+
Sbjct: 59 STPLHLAAGYNRVRIVQLLL 78
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 164 bits (419), Expect = 8e-52
Identities = 53/166 (31%), Positives = 76/166 (45%), Gaps = 9/166 (5%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
L+ A + G E V+ L + + T PL AA + +V+
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG---RQST-----PLHFAAGYNRVSVVE 59
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
+L++HGA V++K + PL AC GH+ V + LV+HGA V++ T L A KG
Sbjct: 60 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 119
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
Y I K LL AD +K+ GNT L + G +I LL A
Sbjct: 120 KYEICKLLLQHGADPTKKNRDGNTPLD-LVKDGDTDIQDLLRGDAA 164
Score = 149 bits (378), Expect = 1e-45
Identities = 51/151 (33%), Positives = 65/151 (43%), Gaps = 3/151 (1%)
Query: 79 PLWCAAAAGHLPIVQFLVE-HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEV 137
L AA AG + V+ L STPL A VV+YL++HGAD
Sbjct: 11 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
++ G L AC GHY + + L+ A +N T LH+ A G EI KLLL H
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130
Query: 198 GARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
GA + G TPL G I + L
Sbjct: 131 GADPTKKNRDGNTPLDLVKD-GDTDIQDLLR 160
Score = 120 bits (305), Expect = 1e-34
Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 5/131 (3%)
Query: 99 GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVE-HGADFEVSNRHGHTCLMIACYKGHYRI 157
GA NS+ L A G VK L + T L A +
Sbjct: 1 GAMGNSEADR---QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAV 216
V+YLL AD++ K G LH+ G E+ +LL+ HGA ++V D + TPL AA
Sbjct: 58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 117
Query: 217 VGHQHIVEYLI 227
G I + L+
Sbjct: 118 KGKYEICKLLL 128
Score = 90.5 bits (226), Expect = 6e-23
Identities = 35/101 (34%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
GG PL AC GH E+ E LVK A V + PL AAA G I
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKH-GAVVNVA--------DLWKFTPLHEAAAKGKYEIC 124
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
+ L++HGA K R +TPL DG + L A
Sbjct: 125 KLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164
Score = 60.5 bits (148), Expect = 9e-12
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 166 ADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGAR--MDVDSYGMTPLLAAAVVGHQHIV 223
A N S+ + L + A+AG +E +K L + + D++ TPL AA +V
Sbjct: 2 AMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV 58
Query: 224 EYLI--GLNI 231
EYL+ G ++
Sbjct: 59 EYLLQHGADV 68
Score = 37.8 bits (89), Expect = 0.001
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 198 GARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEK 237
GA +S LL AA G V+ L + V+ ++
Sbjct: 1 GA--MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI 38
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 166 bits (423), Expect = 1e-51
Identities = 52/212 (24%), Positives = 72/212 (33%), Gaps = 15/212 (7%)
Query: 23 EIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWC 82
+ + + L+ A G E+V+ VKE D + EG L
Sbjct: 10 SPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQ--------PNEEGITALHN 60
Query: 83 AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD-FEVSNRH 141
A + IV FL+ GA VNS TPL A + LV+HGA F +
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120
Query: 142 GHTCLMIA--CYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
G T +G+ YL + M +S AL D A + L
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWD-YSAEFGDELSFREGESV 179
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVE-YLIGL 229
+ D T AA+ G + V GL
Sbjct: 180 TVLRRDGPEETDWWWAALHGQEGYVPRNYFGL 211
Score = 152 bits (387), Expect = 3e-46
Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 11/186 (5%)
Query: 50 VEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTN 109
+ ++ + + L AA G L +VQ V+ +
Sbjct: 1 MRSVL-RKAGSPRKA-----RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEG 54
Query: 110 STPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMN 169
T L A ++ +V +L+ GA+ + HG T L A I L+ A +
Sbjct: 55 ITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF 114
Query: 170 RKSSK-GNTALHDCAEA--GSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEY 225
+ G TA C G + L M + +S + L + + +
Sbjct: 115 ATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS-AEFGDELSF 173
Query: 226 LIGLNI 231
G ++
Sbjct: 174 REGESV 179
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 166 bits (423), Expect = 2e-51
Identities = 47/219 (21%), Positives = 77/219 (35%), Gaps = 23/219 (10%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
GA ++ ++GH ADV ET P W AA +
Sbjct: 15 GAMEYLIEWKDGHSPSWVPSS-YIAADVVSEY------ET-----PWWTAARKADEQALS 62
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN-RHGHTCLMIACYK 152
L+ V++ T L G V+ L E GAD + + R G T L +A
Sbjct: 63 QLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLL 212
+V+ L+ L AD+ + +G TAL E + G R+ ++ + +L
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK--VINVL 179
Query: 213 AAAVVGHQHIVEYLIG-------LNIVSRKEKIDALELL 244
V + + E + +V K+ D +
Sbjct: 180 EGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVK 218
Score = 145 bits (369), Expect = 3e-43
Identities = 42/209 (20%), Positives = 61/209 (29%), Gaps = 34/209 (16%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
TP A R ++ + L++ DV+ G L A G V+
Sbjct: 45 YETPWWTAARKADEQALSQLLE--DRDVDAVDE--------NGRTALLFVAGLGSDKCVR 94
Query: 94 FLVEHGAKVNSK-TRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
L E GA ++ + R T L A VV+ LVE GAD EV + G T L +A
Sbjct: 95 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 154
Query: 153 GHYRIVKYLLSLNADMNRKSS----------------------KGNTALHDCAEAGSIEI 190
+ + + KG + +
Sbjct: 155 LKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDC 214
Query: 191 LKLLLSHGARMDVDSYGMTPLLAAAVVGH 219
+ H A DV L A
Sbjct: 215 EWVKGVHVAE-DVAKDYEDGLEYAVAESV 242
Score = 143 bits (363), Expect = 2e-42
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 6/155 (3%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
EGA GH P A V S+ TP A + L+ D
Sbjct: 14 EGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLL-EDRD 69
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKL 193
+ + +G T L+ G + V+ L AD++ + + G TALH A E+++
Sbjct: 70 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 194 LLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
L+ GA ++V D G+T L A + +
Sbjct: 130 LVELGADIEVEDERGLTALELAREILKTTPKGNPM 164
Score = 112 bits (283), Expect = 1e-30
Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 13/133 (9%)
Query: 99 GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV 158
G++ + DGH AD T A K + +
Sbjct: 8 GSRTAGEGAM---EYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQAL 61
Query: 159 KYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS----YGMTPLLAA 214
LL + D++ G TAL A GS + ++LL GA D+D G+T L A
Sbjct: 62 SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA--DLDHRDMRGGLTALHMA 118
Query: 215 AVVGHQHIVEYLI 227
A +VE L+
Sbjct: 119 AGYVRPEVVEALV 131
Score = 92.3 bits (230), Expect = 7e-23
Identities = 28/156 (17%), Positives = 43/156 (27%), Gaps = 22/156 (14%)
Query: 33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
GG T L MA E+VE LV E AD+E E G L A
Sbjct: 110 GGLTALHMAAGYVRPEVVEALV-ELGADIEV--------EDERGLTALELAREILKTTPK 160
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
++ G ++ + + + V + + + G G + +K
Sbjct: 161 GNPMQFGRRIGLE---KVINVLEGQVFEYAEVDEIVEKRG--------KGKDVEYLVRWK 209
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI 188
A+ K L I
Sbjct: 210 DGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESVI 243
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 160 bits (408), Expect = 3e-50
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 11/168 (6%)
Query: 33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
L A G E + L+ + +V G L G+ I
Sbjct: 4 PWGNELASAAARGDLEQLTSLL-QNNVNVNAQNG--------FGRTALQ-VMKLGNPEIA 53
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
+ L+ GA + K RT + A G ++ L+E AD + + G+ L +A +
Sbjct: 54 RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113
Query: 153 GHYRIVKYLLSLNA-DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
GH R+V++L+ A ++ ++ KG+TA G E++ L+ ++GA
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 160 bits (408), Expect = 4e-50
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
L AAA G L + L+++ VN++ T L+ G+ + + L+ GA+ ++
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK 66
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
+R G + A G ++ LL AD+N + ++GN LH A+ G + +++ L+ H
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 199 ARMDV---DSYGMTPLLAAAVVGHQHIVEYLI 227
A +V + G T A + G +V +
Sbjct: 127 AS-NVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 124 bits (313), Expect = 7e-36
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
L +A G + L+++ + N G T L + G+ I + LL A+ +
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
K G +HD A AG ++ L+ LL A +++ D+ G PL AA GH +VE+L+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Score = 94.4 bits (236), Expect = 2e-24
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM 201
L A +G + LL N ++N ++ G TAL + G+ EI + LL GA
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANP 63
Query: 202 DV-DSYGMTPLLAAAVVGHQHIVEYLI 227
D+ D G + AA G ++ L+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLL 90
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 160 bits (407), Expect = 4e-50
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 10/164 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
L A G + V L+ + G L G I
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR--------FGKTALQ-VMMFGSTAIAL 52
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L++ GA N + + ++P+ A G +K LVEHGAD V + G + +A +G
Sbjct: 53 ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 112
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
H +V +L + +D++R+ ++G T L + G+ +++ +L H
Sbjct: 113 HTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 148 bits (377), Expect = 1e-45
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 8/153 (5%)
Query: 79 PLWCAAAAGHLPIVQFLVE-HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEV 137
L AAA G + V+ L+ ++ R T L+ F G + L++ GA V
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNV 63
Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
+ G + + A G +K L+ AD+N G +H + G ++ L +
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123
Query: 198 GARMDV---DSYGMTPLLAAAVVGHQHIVEYLI 227
D+ D+ G+TPL A G Q +V+ L
Sbjct: 124 S---DLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 120 bits (303), Expect = 2e-34
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 109 NSTPLRAACFDGHFGVVKYLVE-HGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNAD 167
L A G V+ L+ + NR G T L + + G I LL A
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60
Query: 168 MNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
N + + G + +HD A G ++ LK+L+ HGA ++V D G P+ A GH +V +L
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
Query: 227 I 227
Sbjct: 121 A 121
Score = 54.7 bits (133), Expect = 1e-09
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 174 KGNTALHDCAEAGSIEILK-LLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
+ L A G ++ ++ LL D ++ +G T L G I L+
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELL 55
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 158 bits (401), Expect = 8e-49
Identities = 44/196 (22%), Positives = 67/196 (34%), Gaps = 30/196 (15%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
GA ++ ++GH ADV ET P W AA +
Sbjct: 14 GAMEYLIEWKDGHSPSWVPSS-YIAADVVSEY------ET-----PWWTAARKADEQALS 61
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN-RHGHTCLMIACYK 152
L+ V++ T L G V+ L E GAD + + R G T L +A
Sbjct: 62 QLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLL 212
+V+ L+ L AD+ + +G TAL E + G R
Sbjct: 121 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR------------ 168
Query: 213 AAAVVGHQHIVEYLIG 228
+G + ++ L G
Sbjct: 169 ----IGLEKVINVLEG 180
Score = 146 bits (370), Expect = 4e-44
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 6/155 (3%)
Query: 75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
EGA GH P A V S+ TP A + L+ D
Sbjct: 13 EGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLL-EDRD 68
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKL 193
+ + +G T L+ G + V+ L AD++ + + G TALH A E+++
Sbjct: 69 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 194 LLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
L+ GA ++V D G+T L A + +
Sbjct: 129 LVELGADIEVEDERGLTALELAREILKTTPKGNPM 163
Score = 118 bits (299), Expect = 2e-33
Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 13/133 (9%)
Query: 99 GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV 158
G++ + DGH AD T A K + +
Sbjct: 7 GSRTAGEGAM---EYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQAL 60
Query: 159 KYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS----YGMTPLLAA 214
LL + D++ G TAL A GS + ++LL GA D+D G+T L A
Sbjct: 61 SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA--DLDHRDMRGGLTALHMA 117
Query: 215 AVVGHQHIVEYLI 227
A +VE L+
Sbjct: 118 AGYVRPEVVEALV 130
Score = 64.1 bits (157), Expect = 6e-13
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
GG T L MA E+VE LV E AD+E E G L A
Sbjct: 109 GGLTALHMAAGYVRPEVVEALV-ELGADIEV--------EDERGLTALELAREILKTTPK 159
Query: 93 QFLVEHGAKVNSK 105
++ G ++ +
Sbjct: 160 GNPMQFGRRIGLE 172
Score = 61.4 bits (150), Expect = 6e-12
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 169 NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI- 227
+R + +G + G A DV S TP AA + + L+
Sbjct: 8 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DVVSEYETPWWTAARKADEQALSQLLE 65
Query: 228 GLNI 231
++
Sbjct: 66 DRDV 69
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 152 bits (387), Expect = 4e-47
Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 6/147 (4%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
L AAA G + V+ L+E GA N+ P++ G V + L+ HGA+ +
Sbjct: 15 WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCA 73
Query: 139 NRHGHTC-LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
+ T + A +G + L A ++ + + G + E G ++ + L +
Sbjct: 74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133
Query: 198 GARMDVDSYGMTPLLAAAVVGHQHIVE 224
G A G I +
Sbjct: 134 AG--GTR--GSNHARIDAAEGPSDIPD 156
Score = 143 bits (363), Expect = 2e-43
Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 16/158 (10%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
A L A G E V L+ E A+ G P+ G + +
Sbjct: 12 SADWLATAAARGRVEEVRALL-EAGANPNAP--------NSYGRRPIQVMMM-GSARVAE 61
Query: 94 FLVEHGAKVNSKTRTNST-PLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
L+ HGA+ N T P+ A +G + L GA +V + G + +A
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL 121
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI 190
GH + +YL + G+ A G +I
Sbjct: 122 GHRDVARYLRAAAGGTR-----GSNHARIDAAEGPSDI 154
Score = 136 bits (344), Expect = 1e-40
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 96 VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
+E A S ++ L A G V+ L+E GA+ N +G + + G
Sbjct: 1 MEPAA--GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57
Query: 156 RIVKYLLSLNADMNRKSSKGNT-ALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLA 213
R+ + LL A+ N T +HD A G ++ L +L GAR+DV D++G P+
Sbjct: 58 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117
Query: 214 AAVVGHQHIVEYLI 227
A +GH+ + YL
Sbjct: 118 AEELGHRDVARYLR 131
Score = 79.8 bits (198), Expect = 6e-19
Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 14/95 (14%)
Query: 31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP 90
P+ A R G + + L + A ++ G P+ A GH
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRA-GARLDVR--------DAWGRLPVDLAEELGHRD 125
Query: 91 IVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVV 125
+ ++L R +G +
Sbjct: 126 VARYLRAAAGGTRGS-----NHARIDAAEGPSDIP 155
Score = 27.8 bits (63), Expect = 2.3
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 34 GATPLIMACRNGHKEIVE 51
G+ + G +I +
Sbjct: 139 GSNHARIDAAEGPSDIPD 156
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 149 bits (380), Expect = 2e-46
Identities = 57/124 (45%), Positives = 73/124 (58%)
Query: 76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
G PL AA GHL +V+ L+E GA VN+K + TPL A +GH VVK L+E GAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
+++G T L +A GH +VK LL AD+N K G T LH A G +E++KLLL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 196 SHGA 199
GA
Sbjct: 122 EAGA 125
Score = 143 bits (363), Expect = 8e-44
Identities = 57/133 (42%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A RNGH E+V+ L+ E ADV G PL AA GHL +V+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-EAGADVNAK--------DKNGRTPLHLAARNGHLEVVK 52
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+E GA VN+K + TPL A +GH VVK L+E GAD +++G T L +A G
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112
Query: 154 HYRIVKYLLSLNA 166
H +VK LL A
Sbjct: 113 HLEVVKLLLEAGA 125
Score = 133 bits (337), Expect = 5e-40
Identities = 52/118 (44%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
TPL A +GH VVK L+E GAD +++G T L +A GH +VK LL AD+N
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
K G T LH A G +E++KLLL GA ++ D G TPL AA GH +V+ L+
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 100 bits (251), Expect = 4e-27
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 141 HGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGAR 200
+G T L +A GH +VK LL AD+N K G T LH A G +E++KLLL GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 201 MDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
++ D G TPL AA GH +V+ L+
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 150 bits (383), Expect = 2e-46
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 10/161 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
L+ A R G + V L+ A G PL AA GH +
Sbjct: 2 LGKKLLEAARAGQDDEVRILM-ANGAPFTTDW---------LGTSPLHLAAQYGHFSTTE 51
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ G +++T+ + TPL A +GH +V+ L++HGAD + T L A
Sbjct: 52 VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN 111
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
H +V+ L+ AD++ +S TA + G+ ++ ++L
Sbjct: 112 HQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 149 bits (379), Expect = 6e-46
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 2/149 (1%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
L AA AG V+ L+ +GA ++PL A GHF + L+ G +
Sbjct: 5 KLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
+ T L +A +GH IV+ LL AD+N K TALH E E+++LL+ +G
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123
Query: 199 ARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
A + + T + G++ + E L
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 119 bits (301), Expect = 3e-34
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
L A G V+ L+ +GA F + G + L +A GH+ + LL +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
++ T LH A G I+++LL HGA ++ D MT L A HQ +VE LI
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Score = 68.2 bits (168), Expect = 1e-14
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 175 GNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI--GLNI 231
L + A AG + +++L+++GA D G +PL AA GH E L+ G++
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 150 bits (379), Expect = 5e-45
Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 12/195 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
T L AC GH EIVE+L+ + V + G PL AA+AG IV+
Sbjct: 40 SRTALHWACSAGHTEIVEFLL-QLGVPVNDK--------DDAGWSPLHIAASAGXDEIVK 90
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+ GA VN+ + TPL A + L+E GA+ + + + T + A KG
Sbjct: 91 ALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG 150
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
+ ++V LL A N + ++GNT LH + +E K L++ GA + + + TPL
Sbjct: 151 NLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ 210
Query: 213 AAAVVGHQHIVEYLI 227
A G ++ +
Sbjct: 211 VAK--GGLGLILKRL 223
Score = 147 bits (373), Expect = 3e-44
Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 10/196 (5%)
Query: 33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
+A E+ E ++ K+ T + L A +AGH IV
Sbjct: 6 SNIMICNLAYSGKLDELKERIL-ADKSLATRT--------DQDSRTALHWACSAGHTEIV 56
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
+FL++ G VN K +PL A G +VK L+ GA N++G T L A K
Sbjct: 57 EFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK 116
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
+ I LL A+ + K TA+H A G+++++ +LL + A ++ D+ G TPL
Sbjct: 117 NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL 176
Query: 212 LAAAVVGHQHIVEYLI 227
A ++L+
Sbjct: 177 HLACDEERVEEAKFLV 192
Score = 123 bits (309), Expect = 1e-34
Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 11/170 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G +PL +A G EIV+ L+ + A V G PL AA+ I
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVK-GAHVNA--------VNQNGCTPLHYAASKNRHEIAV 123
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+E GA ++K ++T + A G+ +V L+ + A + + G+T L +AC +
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
K+L++ A + ++ + T L G + ++ L+ G +
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQ--VAKGGLGLILKRLAEGEEASM 231
Score = 59.1 bits (143), Expect = 9e-11
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMTPLLAAAVVGHQHIVEYLI 227
+ E+ + +L+ + D T L A GH IVE+L+
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLL 60
Query: 228 --GLNI 231
G+ +
Sbjct: 61 QLGVPV 66
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 149 bits (378), Expect = 9e-45
Identities = 50/229 (21%), Positives = 86/229 (37%), Gaps = 39/229 (17%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
+PL++A + + + L+K +V + GA G L AA +L
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGA--------MGETALHIAALYDNLEAAM 54
Query: 94 FLVEHGAKV-----NSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD-------------F 135
L+E ++ S+ T L A + + +V+ L+ GA
Sbjct: 55 VLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRP 114
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI----L 191
+G L A G IV+ L+ AD+ + S GNT LH +
Sbjct: 115 HNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMY 174
Query: 192 KLLLSHGA-------RMDVDSYGMTPLLAAAVVGHQHIVEYLI--GLNI 231
LLLS+ + ++ G+TP A V G+ + ++L+ +I
Sbjct: 175 NLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223
Score = 114 bits (287), Expect = 3e-31
Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 16/158 (10%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEE-----TGAVMFDHETVEGAPPLWCAAAAGH 88
G T L +A N + +V L+ A V + G PL AA G
Sbjct: 75 GQTALHIAVINQNVNLVRALL-ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVV----KYLVEHGAD------FEVS 138
IV+ L+EHGA + ++ +T L + L+ + V
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVP 193
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGN 176
N G T +A +G+ + ++L+ + +
Sbjct: 194 NNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 142 bits (361), Expect = 2e-43
Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 2/131 (1%)
Query: 70 DHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV 129
L AAA G + V+ L+E GA N+ R P++ G V + L+
Sbjct: 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLL 64
Query: 130 EHGADFEVSNRHGHTC-LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI 188
HGA+ ++ T + A +G + L A ++ + G + E G
Sbjct: 65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHR 124
Query: 189 EILKLLLSHGA 199
+I + L +
Sbjct: 125 DIARYLHAATG 135
Score = 139 bits (353), Expect = 3e-42
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 99 GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV 158
++ ++ L A G V+ L+E GAD NR G + + G ++
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60
Query: 159 KYLLSLNADMNRKSSKGNT-ALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAV 216
+ LL A+ N T +HD A G ++ L +L GAR+DV D++G P+ A
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120
Query: 217 VGHQHIVEYLI 227
GH+ I YL
Sbjct: 121 QGHRDIARYLH 131
Score = 138 bits (350), Expect = 1e-41
Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 11/135 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
L A G E V L+ E AD G P+ G + +
Sbjct: 12 SDAGLATAAARGQVETVRQLL-EAGADPNAL--------NRFGRRPIQVMMM-GSAQVAE 61
Query: 94 FLVEHGAKVNSKTRTNST-PLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
L+ HGA+ N T P+ A +G + L GA +V + G + +A +
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ 121
Query: 153 GHYRIVKYLLSLNAD 167
GH I +YL + D
Sbjct: 122 GHRDIARYLHAATGD 136
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 142 bits (360), Expect = 2e-43
Identities = 36/121 (29%), Positives = 55/121 (45%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
L A+ G +P V++L+++G+ N K TPL AC GH VV+ L++H A +
Sbjct: 13 LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
+ L A GH IVK LLS A N + G + + +L L +
Sbjct: 73 GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132
Query: 199 A 199
+
Sbjct: 133 S 133
Score = 136 bits (344), Expect = 6e-41
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 99 GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV 158
G T L A G V+YL+++G+D V + G T L AC GH ++V
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 159 KYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVV 217
+ LL A +N + ++ LHD A+ G ++I+KLLLS+GA + + +G+ P+
Sbjct: 60 ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119
Query: 218 GHQHIVEYLI 227
+ ++
Sbjct: 120 SMKSLLLLPE 129
Score = 100 bits (253), Expect = 3e-27
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL AC +GH ++VE L++ KA V TG + PL AA GH+ IV+
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQH-KALVNTTGY--------QNDSPLHDAAKNGHVDIVK 93
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
L+ +GA N+ P+ + ++ ++ +
Sbjct: 94 LLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 61.3 bits (150), Expect = 3e-12
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
+PL A +NGH +IV+ L+ A + G P+ ++
Sbjct: 76 NDSPLHDAAKNGHVDIVKLLL-SYGASRNA--------VNIFGLRPVDYTDDESMKSLLL 126
Query: 94 FLVEHGAKVNS 104
++ + S
Sbjct: 127 LPEKNESSSAS 137
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 135 bits (342), Expect = 1e-40
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
+ A +NG + V+ V DV T G PL AA G L I++
Sbjct: 7 CDKEFMWALKNGDLDEVKDYV-AKGEDVNRT--------LEGGRKPLHYAADCGQLEILE 57
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
FL+ GA +N+ + + TPL +A ++GH VK L+ GAD V G T +
Sbjct: 58 FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117
Query: 154 HYRIVK 159
+++
Sbjct: 118 IKALLQ 123
Score = 130 bits (330), Expect = 7e-39
Identities = 35/114 (30%), Positives = 47/114 (41%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
A G L V+ V G VN PL A G ++++L+ GAD
Sbjct: 10 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
++H T L+ A Y+GH VK LLS AD K G TA +L+
Sbjct: 70 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 127 bits (323), Expect = 8e-38
Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 1/116 (0%)
Query: 110 STPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMN 169
A +G VK V G D + G L A G I+++LL AD+N
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 170 RKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVE 224
T L G + +KLLLS GA V G+T A + +++
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 102 bits (257), Expect = 6e-28
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
M A G VK ++ D+NR G LH A+ G +EIL+ LL G
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 199 ARMDV---DSYGMTPLLAAAVVGHQHIVEYLI 227
A D+ D + +TPLL+A GH V+ L+
Sbjct: 64 A--DINAPDKHHITPLLSAVYEGHVSCVKLLL 93
Score = 64.7 bits (159), Expect = 1e-13
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 170 RKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMTPLLAAAVVGHQHIVEYL 226
S + + G ++ +K ++ G DV G PL AA G I+E+L
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGE--DVNRTLEGGRKPLHYAADCGQLEILEFL 59
Query: 227 I 227
+
Sbjct: 60 L 60
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 134 bits (338), Expect = 2e-39
Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 17/166 (10%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKV---NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
+ AA G L E G + K+ LR + + + +L+ GAD
Sbjct: 9 TVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI 68
Query: 136 EVSNRHGHTCLMIACYKGH------YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE 189
+ + G T G + K L AD+ + ++
Sbjct: 69 KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVD 128
Query: 190 ILK-------LLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
+ + G ++ + D +G+T L ++ +
Sbjct: 129 ENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME 174
Score = 132 bits (334), Expect = 8e-39
Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 19/181 (10%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
+ A G E L ++ + +E ++ L I FL
Sbjct: 8 RTVSAAAMLGTYEDFLELFEK-GYEDKE-----SVLKSNILYDVLRNNNDEARYKISMFL 61
Query: 96 VEHGAKVNSKTRTNSTPLRAACFDGHFGV------VKYLVEHGADFEVSNRHGHTCLMIA 149
+ GA + S+T+ +T G + K +E GAD + +
Sbjct: 62 INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121
Query: 150 CYKGHYRIVK-------YLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
+ + + K G TAL LK++ + + +
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181
Query: 203 V 203
+
Sbjct: 182 L 182
Score = 109 bits (275), Expect = 5e-30
Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 10/146 (6%)
Query: 104 SKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRH---GHTCLMIACYKGHYRIVKY 160
S + + AA G + L E G + + S + L + Y+I +
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60
Query: 161 LLSLNADMNRKSSKGNTALHDCAEAG------SIEILKLLLSHGARMD-VDSYGMTPLLA 213
L++ AD+ ++ +G T + G + E+ K+ L GA + + +
Sbjct: 61 LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120
Query: 214 AAVVGHQHIVEYLIGLNIVSRKEKID 239
E + ++ + +
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQ 146
Score = 107 bits (270), Expect = 3e-29
Identities = 20/149 (13%), Positives = 41/149 (27%), Gaps = 22/149 (14%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH------L 89
L +I +L+ AD++ T EG + G
Sbjct: 44 DVLRNNNDEARYKISMFLI-NKGADIKSR--------TKEGTTLFFPLFQGGGNDITGTT 94
Query: 90 PIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVK-------YLVEHGADFEVSNRHG 142
+ + +E GA + + + + F+ + + G + ++ G
Sbjct: 95 ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWG 154
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRK 171
T L +K + N K
Sbjct: 155 LTALEFVKRCQKPIALKMMEDYIKKYNLK 183
Score = 75.5 bits (186), Expect = 4e-17
Identities = 13/119 (10%), Positives = 33/119 (27%), Gaps = 22/119 (18%)
Query: 34 GATPLIMACRNGHK------EIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAG 87
G T + G E+ + + E AD+ ++
Sbjct: 75 GTTLFFPLFQGGGNDITGTTELCKIFL-EKGADITALYK--------PYKIVVFKNIFNY 125
Query: 88 HL------PIVQF-LVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
+ P+ + + G ++ K + T L +K + ++ + +
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 129 bits (328), Expect = 2e-38
Identities = 46/140 (32%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
HG+ + L A G V+ L+ +GAD + +G T L +A G
Sbjct: 6 HHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG 58
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMTP 210
H IV+ LL AD+N + G T LH A G +EI ++LL HGA DV D +G T
Sbjct: 59 HLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA--DVNAQDKFGKTA 116
Query: 211 LLAAAVVGHQHIVEYLIGLN 230
+ G++ + E L LN
Sbjct: 117 FDISIGNGNEDLAEILQKLN 136
Score = 129 bits (328), Expect = 2e-38
Identities = 40/119 (33%), Positives = 60/119 (50%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
L AA AG V+ L+ +GA VN+K TPL A GH +V+ L+++GAD
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
+ G T L +A + GH I + LL AD+N + G TA G+ ++ ++L
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 121 bits (307), Expect = 2e-35
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
L+ A R G + V L+ ADV G PL+ A A GHL IV+
Sbjct: 14 LGKKLLEAARAGQDDEVRILM-ANGADVNAK--------DEYGLTPLYLATAHGHLEIVE 64
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
L+++GA VN+ TPL A F GH + + L++HGAD ++ G T I+ G
Sbjct: 65 VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124
Query: 154 HYRIVKYLLSLN 165
+ + + L LN
Sbjct: 125 NEDLAEILQKLN 136
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 131 bits (330), Expect = 3e-37
Identities = 43/227 (18%), Positives = 70/227 (30%), Gaps = 46/227 (20%)
Query: 34 GATPLIMA---CRNGHKEIVEYLVKECKADVEETGA---VMFDHETVEGAPPLWCAAAAG 87
G T L+ A NG + + L+ + + + +G L A
Sbjct: 54 GKTCLLKAMLNLHNGQNDTIALLL-DVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR 112
Query: 88 HLPIVQFLVEHGAKVNSKTRTN--------------STPLRAACFDGHFGVVKYLVEHG- 132
++ +V LVE+GA V + + PL A +VK+L+++
Sbjct: 113 NMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW 172
Query: 133 --ADFEVSNRHGHTCLMIACYKGHYRI----------------VKYLLSLNADMNRKSSK 174
AD + G+T L + L + K
Sbjct: 173 QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK 232
Query: 175 GNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQH 221
G T L A +G I +L +L + AAA H H
Sbjct: 233 GLTPLALAASSGKIGVLAYILQREI------HEPECRHAAAHHHHHH 273
Score = 125 bits (315), Expect = 5e-35
Identities = 49/240 (20%), Positives = 80/240 (33%), Gaps = 49/240 (20%)
Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA---GHLPIV 92
+ A + + +E L+ + + F + G L A G +
Sbjct: 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFK-DPETGKTCLLKAMLNLHNGQNDTI 73
Query: 93 QFLVEHGAKVNSKTRTN-----------STPLRAACFDGHFGVVKYLVEHGAD------- 134
L++ K +S + T L A + +V LVE+GAD
Sbjct: 74 ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANG 133
Query: 135 -------FEVSNRHGHTCLMIACYKGHYRIVKYLLS---LNADMNRKSSKGNTALHDCAE 184
G L +A IVK+LL AD++ + S GNT LH E
Sbjct: 134 DFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVE 193
Query: 185 AG---------SIEILKLLLSHGARMD--------VDSYGMTPLLAAAVVGHQHIVEYLI 227
+ +L GA++ + G+TPL AA G ++ Y++
Sbjct: 194 VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253
Score = 107 bits (270), Expect = 2e-28
Identities = 37/193 (19%), Positives = 61/193 (31%), Gaps = 33/193 (17%)
Query: 82 CAAAAGHLPIVQFLVEHGAKVNSK-TRTNSTPLRAACF---DGHFGVVKYLVEHGADFEV 137
C LP +Q + K T T L A +G + L++ +
Sbjct: 26 CQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85
Query: 138 -----------SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK------------ 174
S G T L IA + + +V L+ AD+ ++
Sbjct: 86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGF 145
Query: 175 --GNTALHDCAEAGSIEILKLLLSHGARM-DV---DSYGMTPLLAAAVVGHQHIVEYLIG 228
G L A + I+K LL + + D+ DS G T L A V +
Sbjct: 146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205
Query: 229 LNIVSRKEKIDAL 241
++ + + A
Sbjct: 206 TSMYNEILILGAK 218
Score = 94.1 bits (234), Expect = 3e-23
Identities = 34/167 (20%), Positives = 55/167 (32%), Gaps = 37/167 (22%)
Query: 98 HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVE-------HGADFEVSNR-HGHTCLMIA 149
A + + A + ++ L+ D E + G TCL+ A
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 150 ---CYKGHYRIVKYLLS-----------LNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
+ G + LL +NA KG TALH E ++ ++ LL+
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121
Query: 196 SHGA---------------RMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
+GA +G PL AA IV++L+
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 122 bits (310), Expect = 5e-36
Identities = 38/102 (37%), Positives = 57/102 (55%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
PL AA GH V+ L+ GA VN++++ +TPL A +GH +VK L+ GAD
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH 180
++ G+T +A GH+ IVK L + AD+N +S + H
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 119 bits (302), Expect = 9e-35
Identities = 44/124 (35%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 99 GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV 158
G SK +TPL A +GH VK L+ GAD ++ G+T L +A GH IV
Sbjct: 1 GHMWGSKD--GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 159 KYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVV 217
K LL+ AD+N +S GNT H + G EI+KLL + GA ++
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH------ 112
Query: 218 GHQH 221
H H
Sbjct: 113 -HHH 115
Score = 103 bits (260), Expect = 2e-28
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 132 GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
G ++ G+T L A GH VK LLS AD+N +S GNT LH A+ G EI+
Sbjct: 1 GHM--WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 192 KLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
KLLL+ GA ++ G TP A GH IV+ L
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD 95
Score = 80.9 bits (201), Expect = 8e-20
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A +NGH EIV+ L+ + ADV + +G P A GH IV+
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAK-GADVNAR--------SKDGNTPEHLAKKNGHHEIVK 92
Query: 94 FLVEHGAKVNSKTRTNSTPL 113
L GA VN+++ +S
Sbjct: 93 LLDAKGADVNARSWGSSHHH 112
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 127 bits (320), Expect = 5e-36
Identities = 46/203 (22%), Positives = 71/203 (34%), Gaps = 37/203 (18%)
Query: 34 GATPLIMA---CRNGHKEIVEYLVKECKADVEETGAVM--FDHETVEGAPPLWCAAAAGH 88
G T L+ A ++G + L++ K V E +G L A
Sbjct: 43 GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 102
Query: 89 LPIVQFLVEHGAKVNSKTRTN-------------STPLRAACFDGHFGVVKYLVEHG--- 132
L V+ LVE+GA V+ + PL A + VV YL+E+
Sbjct: 103 LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP 162
Query: 133 ADFEVSNRHGHTCL----------------MIACYKGHYRIVKYLLSLNADMNRKSSKGN 176
A E ++ G+T L +I Y G ++ L + +G
Sbjct: 163 ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL 222
Query: 177 TALHDCAEAGSIEILKLLLSHGA 199
T L A+ G IEI + +L
Sbjct: 223 TPLKLAAKEGKIEIFRHILQREF 245
Score = 118 bits (298), Expect = 1e-32
Identities = 36/171 (21%), Positives = 56/171 (32%), Gaps = 32/171 (18%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMF-----DHETVEGAPPLWCAAAAGH 88
G + L +A + V+ LV E ADV F G PL AA
Sbjct: 90 GHSALHIAIEKRSLQCVKLLV-ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 89 LPIVQFLVEHG-------------------AKVNSKTRTNSTPLRAACFDGHFGVVKYLV 129
+V +L+E+ + + ++ L +DG + L
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 208
Query: 130 EHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH 180
E+SN G T L +A +G I +++L G A H
Sbjct: 209 PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF-------SGAAAHH 252
Score = 92.2 bits (229), Expect = 1e-22
Identities = 34/181 (18%), Positives = 59/181 (32%), Gaps = 39/181 (21%)
Query: 78 PPLWCAAAAGHLPIVQFLVEH--------GAKVNSKTRTNSTPLRAA---CFDGHFGVVK 126
L+ + G + L+E+ ++ T T L A DG +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 127 YLVEHG-----------ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK- 174
L++ A GH+ L IA K + VK L+ AD++ ++
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123
Query: 175 ------------GNTALHDCAEAGSIEILKLLLSHGARM-DV---DSYGMTPLLAAAVVG 218
G L A +++ LL + + + DS G T L A ++
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA 183
Query: 219 H 219
Sbjct: 184 D 184
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 128 bits (324), Expect = 2e-35
Identities = 35/219 (15%), Positives = 58/219 (26%), Gaps = 32/219 (14%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
+A NGH ++ L E E AA GHL ++
Sbjct: 128 NYQAFRLAAENGHLHVLNRLC-ELAPTEIMAMI------QAENYHAFRLAAENGHLHVLN 180
Query: 94 FLVEHGAKVNSKTRT---NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC 150
L E + AA GH V+ +L++ + H
Sbjct: 181 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV 240
Query: 151 YKGHYRIVKYLLSLNADMNRKSS-------------KGNTALHDCAEAGS---IEILKLL 194
R V L ++ + +G L + ++ ++ L
Sbjct: 241 NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFL 300
Query: 195 LS-----HGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
LS A L A +G+Q L+
Sbjct: 301 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339
Score = 114 bits (287), Expect = 3e-30
Identities = 30/207 (14%), Positives = 62/207 (29%), Gaps = 22/207 (10%)
Query: 43 RNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKV 102
+KE + + K ++E+ ++ C A + + L K
Sbjct: 43 TLSYKEAIHIFLPGTK-NMEQVRQLL-------------CLYYAHYNRNAKQLWSDAHKK 88
Query: 103 NSKTRT-NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
K+ C + L+ +V + +A GH ++ L
Sbjct: 89 GIKSEVICFVAAITGCSSAL-DTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL 147
Query: 162 LSLNADMNR--KSSKGNTALHDCAEAGSIEILKLLLSHGA---RMDVDSYGMTPLL-AAA 215
L ++ A AE G + +L L + + AA
Sbjct: 148 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 207
Query: 216 VVGHQHIVEYLIGLNIVSRKEKIDALE 242
GH +++ +L+ ++ +I E
Sbjct: 208 GRGHHNVINFLLDCPVMLAYAEIHEFE 234
Score = 113 bits (284), Expect = 9e-30
Identities = 29/222 (13%), Positives = 53/222 (23%), Gaps = 43/222 (19%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
+A NGH ++ L E + W A GH ++
Sbjct: 163 NYHAFRLAAENGHLHVLNRLC-ELAPTEATA-----MIQAENYYAFRWAAVGRGHHNVIN 216
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN-------------- 139
FL++ + G V ++ H + +
Sbjct: 217 FLLDCPVMLAYA-------EIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL 269
Query: 140 ------RHGHTCLMIACYKGHYRI---VKYLLSLN-----ADMNRKSSKGNTALHDCAEA 185
G L + + +++LLS+ A N L
Sbjct: 270 VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 329
Query: 186 GSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
G+ LLLS + + G + +
Sbjct: 330 GNQGACALLLSIPS--VLALTKANNYYINETGGRLDLRAVAL 369
Score = 87.3 bits (216), Expect = 4e-20
Identities = 23/200 (11%), Positives = 51/200 (25%), Gaps = 55/200 (27%)
Query: 33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
A GH ++ +L+ +C + G +
Sbjct: 198 NYYAFRWAAVGRGHHNVINFLL-DCPVMLAYA---------------EIHEFEYGEKYVN 241
Query: 93 QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVV--------------------------- 125
F+ H ++ + + DG F +V
Sbjct: 242 PFIARHVNRLKE----MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDI 297
Query: 126 KYL-----VEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH 180
++L ++ A + L +A G+ LLS+ + + +
Sbjct: 298 RFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK---ANNYY 354
Query: 181 DCAEAGSIEILKLLLSHGAR 200
G +++ + L H
Sbjct: 355 INETGGRLDLRAVALEHHHH 374
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 119 bits (301), Expect = 4e-33
Identities = 48/235 (20%), Positives = 78/235 (33%), Gaps = 53/235 (22%)
Query: 41 ACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAA---AAGHLPIVQFLVE 97
+G + ++ +L+ K + + G L A +AG + L++
Sbjct: 16 GSPDGLEGLLSFLLTH-KKRLTDEEFREPST----GKTCLPKALLNLSAGRNDTIPILLD 70
Query: 98 HGAK-----------VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD------------ 134
K T L A V+ LVE GAD
Sbjct: 71 IAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP 130
Query: 135 --FEVSNRHGHTCLMIACYKGHYRIVKYLLS---LNADMNRKSSKGNTALHDCAEAGS-- 187
G L +A IV YL AD+ R+ S+GNT LH
Sbjct: 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNT 190
Query: 188 -------IEILKLLLSHGARMD--------VDSYGMTPLLAAAVVGHQHIVEYLI 227
++ LLL A++ +++ G++PL+ AA G I +++I
Sbjct: 191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245
Score = 97.2 bits (242), Expect = 2e-24
Identities = 32/183 (17%), Positives = 54/183 (29%), Gaps = 40/183 (21%)
Query: 79 PLWCAAA----AGHLPIVQFLVEHGAKVNSKTRTNS----TPLRAACF---DGHFGVVKY 127
L+ + G ++ FL+ H ++ + T L A G +
Sbjct: 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67
Query: 128 LVEHGADFEVS-----------NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRK----- 171
L++ G T L IA + V+ L+ AD++ +
Sbjct: 68 LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF 127
Query: 172 ---------SSKGNTALHDCAEAGSIEILKLLLSHGA-RMDV---DSYGMTPLLAAAVVG 218
G L A I+ L +G + D+ DS G T L A +
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIA 187
Query: 219 HQH 221
Sbjct: 188 DNT 190
Score = 71.3 bits (175), Expect = 6e-15
Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 26/128 (20%)
Query: 34 GATPLIMACRNGHKEIVEYLVK--ECKADVEETGAVMFDHETVEGAPPLWCAAAAGH--- 88
G PL +A IV YL + +AD+ + G L A
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRR--------QDSRGNTVLHALVAIADNTR 191
Query: 89 ------LPIVQFLVEHGAKVNSKTRTNS-------TPLRAACFDGHFGVVKYLVEHGADF 135
+ L+ AK+ T + +PL A G G+ ++++
Sbjct: 192 ENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251
Query: 136 EVSNRHGH 143
++ H H
Sbjct: 252 AAAHHHHH 259
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 114 bits (289), Expect = 5e-33
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 83 AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
++ H LV G+ + S L A G V+ L+ +GAD +++G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
T L +A GH +VK LL AD+ + G TA + G+ ++ ++L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 113 bits (285), Expect = 2e-32
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 12/121 (9%)
Query: 41 ACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGA 100
+ H LV + + L AA AG V+ L+ +GA
Sbjct: 1 GSSHHHHHHSSGLVPR-GSHMGSDL------GK-----KLLEAARAGQDDEVRILMANGA 48
Query: 101 KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKY 160
V +K + STPL A +GH VVK L+E GAD ++ G T I+ G+ + +
Sbjct: 49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEI 108
Query: 161 L 161
L
Sbjct: 109 L 109
Score = 111 bits (279), Expect = 2e-31
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG 175
H LV G+ L+ A G V+ L++ AD+ K G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 176 NTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMTPLLAAAVVGHQHIVEYL 226
+T LH A G +E++KLLL GA DV D +G T + G++ + E L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGA--DVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 89.2 bits (222), Expect = 5e-23
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 149 ACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYG 207
H+ L+ + M S L + A AG + +++L+++GA + D G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 208 MTPLLAAAVVGHQHIVEYLI--GLNIVSRKE 236
TPL AA GH +V+ L+ G ++ ++ +
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDK 88
Score = 52.2 bits (126), Expect = 3e-09
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G+TPL +A RNGH E+V+ L++ ADV + G + G+ + +
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEA-GADVXA--------QDKFGKTAFDISIDNGNEDLAE 107
Query: 94 FL 95
L
Sbjct: 108 IL 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 109 bits (276), Expect = 4e-31
Identities = 40/88 (45%), Positives = 52/88 (59%)
Query: 79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
PL AA GHL +V+ L+E GA VN+K + TPL A +GH VVK L+E GAD
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNA 166
+++G T L +A GH +VK LL A
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 108 bits (273), Expect = 8e-31
Identities = 41/89 (46%), Positives = 52/89 (58%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
TPL A +GH VVK L+E GAD +++G T L +A GH +VK LL AD+N
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGA 199
K G T LH A G +E++KLLL GA
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 107 bits (269), Expect = 4e-30
Identities = 45/100 (45%), Positives = 56/100 (56%), Gaps = 9/100 (9%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G TPL +A RNGH E+V+ L+ E ADV G PL AA GHL +V+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-EAGADVNAK--------DKNGRTPLHLAARNGHLEVVK 52
Query: 94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
L+E GA VN+K + TPL A +GH VVK L+E GA
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 99.4 bits (249), Expect = 3e-27
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 141 HGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGAR 200
+G T L +A GH +VK LL AD+N K G T LH A G +E++KLLL GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 201 MDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
++ D G TPL AA GH +V+ L+
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 99.3 bits (247), Expect = 7e-25
Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 31/203 (15%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP--- 90
G TPL + E+V++LVK ++ G L A + +
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKH-GSNRLYG--------DNMGESCLVKAVKSVNNYDSG 181
Query: 91 -IVQFLVEHGAKVNSKTRTNSTPL----RAACFDGHFGVVKYLVEHGADFEVS------- 138
L + + N T L + G KY ++ + V
Sbjct: 182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ 241
Query: 139 -----NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL 193
+ + +N + S G+T L+ A G+I I+
Sbjct: 242 SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 301
Query: 194 LLSHGARMDV-DSYGMTPL-LAA 214
LL +GA + + G+ P+ A
Sbjct: 302 LLDYGADPFIANKSGLRPVDFGA 324
Score = 96.3 bits (239), Expect = 1e-23
Identities = 32/221 (14%), Positives = 72/221 (32%), Gaps = 29/221 (13%)
Query: 28 TKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAG 87
++ ++ + +E+ + + ++ D G PL +
Sbjct: 91 SEGGSSNQQQQHVSFDSLLQEVNDAFPNT-QLNLNIP----VDEH---GNTPLHWLTSIA 142
Query: 88 HLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGH---FGVVKYLVEH-GADFEVSNRHGH 143
+L +V+ LV+HG+ + L A + G + L+++ + +
Sbjct: 143 NLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNR 202
Query: 144 TCL----MIACYKGHYRIVKY--------LLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
T L + + G KY ++ + + + + + +
Sbjct: 203 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 262
Query: 192 KLLLSHGARMDV-----DSYGMTPLLAAAVVGHQHIVEYLI 227
L + DS G T L AA +G+ IV+ L+
Sbjct: 263 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL 303
Score = 90.1 bits (223), Expect = 2e-21
Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 11/167 (6%)
Query: 72 ETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFG-VVKYLVE 130
+ ++ L + L + NS+ +++ + FD V
Sbjct: 59 QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118
Query: 131 HGADF-EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG--- 186
+ + HG+T L + +VK+L+ ++ + G + L ++
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178
Query: 187 SIEILKLLLSHGARM--DVDSYGMTPL----LAAAVVGHQHIVEYLI 227
+ LL + DS T L + + + G +Y +
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYL 225
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 77.5 bits (190), Expect = 1e-16
Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 2/139 (1%)
Query: 67 VMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVK 126
V + + + A PL A AA L +FL+++GA VN PL A GH G+
Sbjct: 226 VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLAC 285
Query: 127 YLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG 186
++ GAD + G L IA + IV L A M + A +
Sbjct: 286 LFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL--AKMREAEAAQGQAGDETYLDI 343
Query: 187 SIEILKLLLSHGARMDVDS 205
+ + ++ S
Sbjct: 344 FRDFSLMASDDPEKLSRRS 362
Score = 77.1 bits (189), Expect = 1e-16
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
Query: 76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKT--RTNSTPLRAACFDGHFGVVKYLVEHGA 133
GA + LP + + HGA VN + N+TPL A ++L+++GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 134 DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL 193
+ ++ G L A GH + L AD+ + S+G L E + +I+ L
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Query: 194 LLSHGARMDVDSYGMTP 210
L R + G
Sbjct: 320 LRLAKMREAEAAQGQAG 336
Score = 73.3 bits (179), Expect = 2e-15
Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 3/121 (2%)
Query: 109 NSTPLRAACFDGHFGVVKYLVEHGADFE--VSNRHGHTCLMIACYKGHYRIVKYLLSLNA 166
+ RA+ + + HGAD + T L+ A ++LL A
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 167 DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEY 225
++N+ S G LH G + L L GA + DS G PL A + IV
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Query: 226 L 226
L
Sbjct: 320 L 320
Score = 44.8 bits (105), Expect = 1e-05
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 145 CLMIACYKGHYRIVKYLLSLNADMNRKSS--KGNTALHDCAEAGSIEILKLLLSHGARMD 202
+ + + L+ AD+N + T L A S+ + LL +GA ++
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262
Query: 203 -VDSYGMTPLLAAAVVGHQHIVEYLI 227
DS G PL A ++GH + +
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFL 288
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 72.7 bits (178), Expect = 3e-15
Identities = 26/135 (19%), Positives = 41/135 (30%), Gaps = 9/135 (6%)
Query: 69 FDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTN------STPLRAACFDGH- 121
F LW A L V +G L A +
Sbjct: 144 FARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQ 203
Query: 122 --FGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTAL 179
+V +++++G + G+T L A +K LL A + + G TAL
Sbjct: 204 ASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 263
Query: 180 HDCAEAGSIEILKLL 194
+ E +LL
Sbjct: 264 DIARKKHHKECEELL 278
Score = 71.9 bits (176), Expect = 5e-15
Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 10/134 (7%)
Query: 104 SKTRTNSTPLRAACFDGHFGVVKYLVEHGADF------EVSNRHGHTCLMIAC---YKGH 154
+ L A + V +G DF + L +A +
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205
Query: 155 YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLLA 213
+V +++ ++ K++ GNTALH A + LKLLL A + V+ G T L
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265
Query: 214 AAVVGHQHIVEYLI 227
A H+ E L
Sbjct: 266 ARKKHHKECEELLE 279
Score = 71.2 bits (174), Expect = 8e-15
Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 3/118 (2%)
Query: 57 CKADVEETGAVMFDHETVEGAPPLWCAAA-AGHLPIVQFLVEHGAKVNSKTRTNSTPLRA 115
D + E L A LP+V F++++G +++K +T L
Sbjct: 173 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 232
Query: 116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSS 173
A +K L++ A N G T L IA K H + L A +
Sbjct: 233 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL--EQAQAGTFAF 288
Score = 35.7 bits (82), Expect = 0.008
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 11/73 (15%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G T L A + ++ L+K +A V G L A H +
Sbjct: 226 GNTALHYAALYNQPDCLKLLLK-GRALVGTVNE--------AGETALDIARKKHHKECEE 276
Query: 94 FLVEHGAKVNSKT 106
L + A+ +
Sbjct: 277 LLEQ--AQAGTFA 287
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 72.3 bits (177), Expect = 3e-15
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 137 VSNRHGHTCLMIAC---YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL 193
+ T L +A + IV +L+ + ++++++ KG+TALH C + E LKL
Sbjct: 164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL 223
Query: 194 LLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
LL A ++ + G TPL A + H+H E L
Sbjct: 224 LLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 72.0 bits (176), Expect = 4e-15
Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 6/146 (4%)
Query: 35 ATPLIMACRNGHKEIVEYLVKECKADVEETGAVM-FDHETVEGAPPLWCAAAAG---HLP 90
+ + K + + + AD + + + L A + L
Sbjct: 127 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 186
Query: 91 IVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC 150
IV FLV++ ++ +T ST L C + +K L+ A E++N G T L IA
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Query: 151 YKGHYRIVKYLLSLNADMNRKSSKGN 176
H + L A R +S +
Sbjct: 247 RLKHEHCEELL--TQALSGRFNSHVH 270
Score = 68.5 bits (167), Expect = 8e-14
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 5/105 (4%)
Query: 96 VEHGAKVNSKTRT--NSTPLRAACFDG---HFGVVKYLVEHGADFEVSNRHGHTCLMIAC 150
V+ K+ + T L A +V +LV++ + + G T L C
Sbjct: 154 VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC 213
Query: 151 YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
+ +K LL A + + G T L +LL
Sbjct: 214 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 37.7 bits (87), Expect = 0.002
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
G+T L C + E ++ L++ KA +E G PL A H +
Sbjct: 205 GSTALHYCCLTDNAECLKLLLR-GKASIEIA--------NESGETPLDIAKRLKHEHCEE 255
Query: 94 FLVE 97
L +
Sbjct: 256 LLTQ 259
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 66.5 bits (162), Expect = 6e-13
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 131 HGADF------EVSNRHGHTCLMIAC---YKGHYRIVKYLLSLNADMNRKSSKGNTALHD 181
+G DF + L +A + +V +++ ++ K++ GNTALH
Sbjct: 154 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213
Query: 182 CAEAGSIEILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYL 226
A + LKLLL A + V+ G T L A H+ E L
Sbjct: 214 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 61.8 bits (150), Expect = 3e-11
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 1/104 (0%)
Query: 59 ADVEETGAVMFDHETVEGAPPLWCAAA-AGHLPIVQFLVEHGAKVNSKTRTNSTPLRAAC 117
D + E L A LP+V F++++G +++K +T L A
Sbjct: 156 QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAA 215
Query: 118 FDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
+K L++ A N G T L IA K H + L
Sbjct: 216 LYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 58.0 bits (140), Expect = 6e-10
Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 9/124 (7%)
Query: 80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS------TPLRAACFDGHFG---VVKYLVE 130
LW A L V +G L A + +V ++++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 131 HGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI 190
+G + G+T L A +K LL A + + G TAL + E
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255
Query: 191 LKLL 194
+LL
Sbjct: 256 EELL 259
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 7e-05
Identities = 54/339 (15%), Positives = 90/339 (26%), Gaps = 126/339 (37%)
Query: 4 LTLDEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVE-YLVKECKADVE 62
L L E+ +LE +I + K + KE+++ Y+
Sbjct: 86 LCLTEFE--NCYLE---GNDIHALA-AKLLQENDTTLVKT---KELIKNYI--------- 127
Query: 63 ETGAVMFDHETVEGAPP--LWCAAAAGHLPI-VQFLVEHGAKVNSKT-----R---TNST 111
A + + L+ A G+ + F G + N+ R
Sbjct: 128 --TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF----GGQGNTDDYFEELRDLYQTYH 181
Query: 112 PLRAACFDGHFGVVKYLVEHGADFEVSNRHGH-----------------------TCLMI 148
L + L+ D E G +C +I
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 149 ACYK-GHYRIVKYLLSLNADMNRKSSKGNTALHD-------CAEAGSIE--------ILK 192
+ HY + LL R KG T AE S E +
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 193 LLLSHGAR-------------MDVDSY-----GMTPLLA--------------------- 213
+L G R + DS +P+L+
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 214 ------AAVV-GHQHIV-----EYLIGLNIVSRKEKIDA 240
++V G +++V + L GLN+ RK K +
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Score = 34.6 bits (79), Expect = 0.033
Identities = 26/148 (17%), Positives = 42/148 (28%), Gaps = 75/148 (50%)
Query: 149 ACYKGHYRIVKYLLSLNADMNRKSSKG-NTALHDCAEAGSIEI---LKLL-----LSHGA 199
A + GH SL G AL + A + I ++++ A
Sbjct: 1757 ATFAGH--------SL----------GEYAAL--ASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 200 RMDVDSYGMTPLLAAAV--------------------VGHQH--IVE----------YLI 227
+ D G + A+ VG + +VE Y+
Sbjct: 1797 -VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA 1855
Query: 228 G------------LNIVSRKEKIDALEL 243
LN + + KID +EL
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQ-KIDIIEL 1882
Score = 27.7 bits (61), Expect = 4.2
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 18/84 (21%)
Query: 120 GHFG-VVKYLVEHGADFEVSNRHG---HTCLMIACYKGH--------YRIVKYLLSLNAD 167
G F V+ + FE G H + A ++K ++
Sbjct: 78 GQFDQVLNLCLTE---FENCYLEGNDIHA--LAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 168 MNRKSSK-GNTALHDCAEAGSIEI 190
R K N+AL G+ ++
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQL 156
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 1.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 174 KGNTALHDCAEAGSI--EILKLLLSHGAR 200
K L A GSI E+L+ LL GA+
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAK 503
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 27.1 bits (61), Expect = 3.4
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 124 VVKYLVEHGADFEVSNRH 141
+ Y V+ R+
Sbjct: 36 IAPYFSYPQYKVTVAGRN 53
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics,
PSI- 2, protein structure initiative; 2.60A {Vibrio
cholerae o1 biovar eltor str} SCOP: c.116.1.7
Length = 208
Score = 27.6 bits (61), Expect = 3.5
Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 6/44 (13%)
Query: 169 NRKSSKGNTALHDCAEAGSIEIL------KLLLSHGARMDVDSY 206
+ L + EIL L + R DV +
Sbjct: 16 RSAPTDSQRLLDEIGGKCHTEILAHCMMNSLFTAQSHREDVVIH 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.405
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,922,348
Number of extensions: 239644
Number of successful extensions: 1971
Number of sequences better than 10.0: 1
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 309
Length of query: 247
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,160,982
Effective search space: 649113192
Effective search space used: 649113192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.0 bits)