BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5990
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V3P6|PSMD1_DROME 26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila
melanogaster GN=Rpn2 PE=1 SV=1
Length = 1020
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 68/106 (64%), Positives = 88/106 (83%), Gaps = 2/106 (1%)
Query: 1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
+ + AG+ISLLD+PM +LK F+LKKL++IVD+FWPE+SE+I+KIE+LHED+ FP+ KLA
Sbjct: 3 LTSAAGIISLLDEPMPDLKVFALKKLDNIVDEFWPEISESIEKIEMLHEDRSFPENKLAG 62
Query: 61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
+VASKV++HLGSF D+L YALGAGDLFDV Y +TII K CI
Sbjct: 63 MVASKVFYHLGSFEDALTYALGAGDLFDVNARNEYTETIIAK--CI 106
>sp|O88761|PSMD1_RAT 26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus
GN=Psmd1 PE=2 SV=1
Length = 953
Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 86/106 (81%), Gaps = 2/106 (1%)
Query: 1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
+ + AG+ISLLD+ +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF + AA
Sbjct: 2 ITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61
Query: 61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K CI
Sbjct: 62 LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105
>sp|Q3TXS7|PSMD1_MOUSE 26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus
GN=Psmd1 PE=1 SV=1
Length = 953
Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 86/106 (81%), Gaps = 2/106 (1%)
Query: 1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
+ + AG+ISLLD+ +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF + AA
Sbjct: 2 ITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61
Query: 61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K CI
Sbjct: 62 LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105
>sp|Q5F418|PSMD1_CHICK 26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus
GN=PSMD1 PE=2 SV=1
Length = 955
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 86/106 (81%), Gaps = 2/106 (1%)
Query: 1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
+ + AG+ISLLD+ +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF + AA
Sbjct: 2 ITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61
Query: 61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K CI
Sbjct: 62 LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105
>sp|Q5R5S4|PSMD1_PONAB 26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii
GN=PSMD1 PE=2 SV=1
Length = 953
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 86/106 (81%), Gaps = 2/106 (1%)
Query: 1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
+ + AG+ISLLD+ +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF + AA
Sbjct: 2 ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61
Query: 61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K CI
Sbjct: 62 LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105
>sp|Q99460|PSMD1_HUMAN 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens
GN=PSMD1 PE=1 SV=2
Length = 953
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 86/106 (81%), Gaps = 2/106 (1%)
Query: 1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
+ + AG+ISLLD+ +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF + AA
Sbjct: 2 ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61
Query: 61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K CI
Sbjct: 62 LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105
>sp|Q54JM5|PSMD1_DICDI 26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium
discoideum GN=psmD1 PE=1 SV=1
Length = 975
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEV-SEAIQKIEILHEDKGFPQYKLA 59
+N+V+ +SLLD+ +ELK +SL+KL+ VD+FW E+ S +I KI+ L +K FP+++LA
Sbjct: 4 INSVSNYLSLLDEDQLELKSYSLEKLDSCVDEFWSEIASSSIDKIKSLSVNKQFPKHELA 63
Query: 60 ALVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKY 103
+LV SKVY++L F +S++YAL AG LF+V + + Y++T++ K+
Sbjct: 64 SLVLSKVYYNLSDFPNSMEYALSAGSLFNVLSKSEYIETLLYKF 107
>sp|Q6FIP2|RPN2_CANGA 26S proteasome regulatory subunit RPN2 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN2 PE=3 SV=1
Length = 941
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 4/122 (3%)
Query: 1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
+ T A +++LL + E+K ++L+ +N+ VD FW EVS + +IE L++D GF K+AA
Sbjct: 3 LTTAAPLLALLKEKDAEVKAYALQSINEGVDQFWSEVSNDLPEIEALYDDNGFQDRKMAA 62
Query: 61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICK----YFCISLSTYRYSNV 116
L+ASKVY++LG + +++YAL A + FD+ T YV+TI+ K Y ++ Y S
Sbjct: 63 LIASKVYYNLGEYESAVKYALAAEEKFDIDEKTQYVETIVSKSIEMYIKLATEIYNKSGE 122
Query: 117 QI 118
Q+
Sbjct: 123 QV 124
>sp|O74762|RPN2_SCHPO 26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn2 PE=1 SV=1
Length = 965
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 73/108 (67%), Gaps = 2/108 (1%)
Query: 1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
+ + G+++LLD+ EL+ +L K+ + +D WPE+S+ + KIE+++ED FP+ +LAA
Sbjct: 12 ITSAGGLMALLDEQERELQVHALLKIYEFIDQLWPEISDDVTKIEVMYEDHSFPERELAA 71
Query: 61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISL 108
LV SKVY++LG + ++L +AL +G F ++ Y +T+I K CI +
Sbjct: 72 LVVSKVYYYLGEYDEALLFALSSGPKFLHDKNSDYKETLIFK--CIDM 117
>sp|Q75CF3|RPN2_ASHGO 26S proteasome regulatory subunit RPN2 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPN2 PE=3 SV=1
Length = 930
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Query: 3 TVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALV 62
T A +++LL + +K ++L +N++VD W EVS I IE L+ED F KLAALV
Sbjct: 5 TAAPLLALLREDDHTVKSYALHSINEVVDQLWSEVSNDITDIEALYEDSKFEDRKLAALV 64
Query: 63 ASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKY--FCISLSTYRYS 114
SK+Y++LG + +++YAL A + FD+ + YV+TI+ + I L+T Y
Sbjct: 65 VSKIYYNLGEYESAVRYALAAEEYFDINEKSRYVETIVSQSIEMYIKLATENYG 118
>sp|P32565|RPN2_YEAST 26S proteasome regulatory subunit RPN2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN2 PE=1 SV=4
Length = 945
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 68/102 (66%)
Query: 1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
+ T A +++LL + +K ++L+ +N++VD W E+S + IE L++D F ++AA
Sbjct: 3 LTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTFSDREMAA 62
Query: 61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICK 102
L+ASKVY++LG + +++YAL A D FD+ + +V+TI+ K
Sbjct: 63 LIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSK 104
>sp|Q18115|PSMD1_CAEEL 26S proteasome non-ATPase regulatory subunit 1 OS=Caenorhabditis
elegans GN=rpn-2 PE=3 SV=4
Length = 965
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 14/111 (12%)
Query: 2 NTVAGVISLLDDP--MIELKEFSLKKLND--IVDDFWPEVSEAIQKIEILHEDKGFPQYK 57
+ A I +L+ P + K LK ND ++ + W EV++A+ +E L ++ FP++
Sbjct: 16 SNAAAFIRVLESPKSAVTDKVLVLKAFNDWDVLVNTWFEVADALPAVEQLLDNNTFPEHS 75
Query: 58 LAALVASKVYFHLGSFSDSLQYALGAGDLFDV--------RNDTVYVKTII 100
AAL+ SKVYF L + +L++AL GD F+V ND YV II
Sbjct: 76 SAALLVSKVYFCLEQYERALEFAL-RGD-FNVVPATRTGLGNDAEYVNKII 124
>sp|O60999|CUL1_DICDI Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 SV=1
Length = 770
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 30 VDDFWPEVSEAIQKIEILHEDKGFPQYKLAAL 61
+DD WPE+ E I KI I +KGFP+ K AL
Sbjct: 15 LDDIWPELEEGIYKI-ITDLNKGFPKQKWIAL 45
>sp|Q4L643|CATA_STAHJ Catalase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=katA
PE=3 SV=1
Length = 503
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 32 DFWPEVSEAIQKIEILHEDKGFPQ 55
DFW V EA+ ++ IL D+G P+
Sbjct: 165 DFWTGVPEALHQVTILMSDRGMPK 188
>sp|Q66V81|CATB_STAXY Catalase B OS=Staphylococcus xylosus GN=katB PE=3 SV=2
Length = 495
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 32 DFWPEVSEAIQKIEILHEDKGFPQ 55
DFW + EA+ ++ IL D+G P+
Sbjct: 164 DFWTSLPEALHQVTILMSDRGIPK 187
>sp|Q49XC1|CATA_STAS1 Catalase OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=katA PE=3 SV=1
Length = 495
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 32 DFWPEVSEAIQKIEILHEDKGFPQ 55
DFW + EA+ ++ IL D+G P+
Sbjct: 164 DFWTSLPEALHQVTILMTDRGIPK 187
>sp|Q8SSH5|RPN2_ENCCU 26S proteasome regulatory subunit RPN2 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN2 PE=1 SV=1
Length = 786
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 59 AALVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTII 100
+L SK+YF L + +++YAL AGDL V + + Y +I+
Sbjct: 51 TSLCLSKIYFVLEDYQQAIEYALRAGDLL-VDDGSFYYTSIV 91
>sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5
PE=3 SV=1
Length = 626
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 16 IELKEFSLKKLNDIVDDFWPEVS 38
I+L+ +LK++ D V DFWP+ +
Sbjct: 213 IQLRNDALKRIRDAVQDFWPDAN 235
>sp|Q65M64|SSUB_BACLD Aliphatic sulfonates import ATP-binding protein SsuB OS=Bacillus
licheniformis (strain DSM 13 / ATCC 14580) GN=ssuB PE=3
SV=1
Length = 255
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 8 ISLLDDPMIELKEFSLKKLNDIVDDFWPE 36
I LLD+P L F+ K L D++ D W E
Sbjct: 151 ILLLDEPFGALDAFTRKHLQDVLTDIWRE 179
>sp|P38308|CS111_YEAST F-box protein COS111 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=COS111 PE=1 SV=2
Length = 924
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 57 KLAALVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICK 102
KL VA V HL + D LG +LF+++++ +Y+K C+
Sbjct: 765 KLHEFVALMVMDHLSNLDD-----LGLEELFNIKSEKLYIKNYCCR 805
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,570,897
Number of Sequences: 539616
Number of extensions: 1542121
Number of successful extensions: 4288
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4268
Number of HSP's gapped (non-prelim): 23
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)