Query psy5990
Match_columns 119
No_of_seqs 102 out of 163
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 23:46:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ady_A RPN2, 26S proteasome re 100.0 9E-47 3.1E-51 344.4 10.9 112 1-114 14-125 (963)
2 1te4_A Conserved protein MTH18 84.4 3.2 0.00011 27.3 6.1 83 4-102 44-126 (131)
3 1y8m_A FIS1; mitochondria, unk 82.7 2.2 7.4E-05 31.6 5.1 44 36-80 57-100 (144)
4 3mkr_A Coatomer subunit epsilo 81.4 7.8 0.00027 28.8 7.9 61 21-82 66-126 (291)
5 3ltm_A Alpha-REP4; protein eng 81.1 3.9 0.00013 28.3 5.8 56 4-65 21-76 (211)
6 3ltj_A Alpharep-4; protein eng 81.1 3.6 0.00012 28.3 5.5 54 5-64 17-70 (201)
7 3ltm_A Alpha-REP4; protein eng 81.0 3.9 0.00013 28.3 5.7 56 5-66 84-139 (211)
8 1pc2_A Mitochondria fission pr 79.5 2.4 8.4E-05 31.0 4.4 44 36-80 50-94 (152)
9 3ltj_A Alpharep-4; protein eng 79.3 4.8 0.00017 27.6 5.7 56 4-65 78-133 (201)
10 1nzn_A CGI-135 protein, fissio 79.2 2.7 9.3E-05 30.0 4.5 43 36-80 53-97 (126)
11 2qk2_A LP04448P; mini spindles 78.5 4.8 0.00016 28.9 5.7 68 5-72 136-209 (242)
12 1oyz_A Hypothetical protein YI 78.2 4.7 0.00016 29.2 5.6 57 3-65 24-80 (280)
13 2xev_A YBGF; tetratricopeptide 78.1 5.9 0.0002 24.1 5.3 31 50-80 69-99 (129)
14 4ga2_A E3 SUMO-protein ligase 75.0 2.2 7.5E-05 28.4 2.8 17 63-79 71-87 (150)
15 1te4_A Conserved protein MTH18 74.1 4.8 0.00017 26.4 4.4 53 4-62 75-127 (131)
16 4hxt_A De novo protein OR329; 70.9 16 0.00055 25.1 6.7 68 5-72 173-245 (252)
17 3o48_A Mitochondria fission 1 70.6 5.3 0.00018 29.1 4.2 45 36-81 58-102 (134)
18 2xev_A YBGF; tetratricopeptide 70.4 11 0.00039 22.8 5.2 44 40-83 21-65 (129)
19 2vq2_A PILW, putative fimbrial 70.3 12 0.00039 24.5 5.5 44 40-83 96-139 (225)
20 4b8j_A Importin subunit alpha- 70.0 10 0.00034 30.1 6.0 65 4-69 416-496 (528)
21 3snx_A SUSD homolog, putative 69.1 9.4 0.00032 31.4 5.9 54 30-83 156-217 (460)
22 1b3u_A Protein (protein phosph 68.3 12 0.00042 29.2 6.1 66 5-71 444-512 (588)
23 3mv2_B Coatomer subunit epsilo 67.9 6.5 0.00022 31.5 4.6 42 38-81 83-124 (310)
24 3lew_A SUSD-like carbohydrate 66.1 11 0.00037 31.2 5.7 53 30-82 170-228 (495)
25 3myv_A SUSD superfamily protei 65.6 11 0.00038 30.6 5.6 52 30-81 160-214 (454)
26 3tpo_A Importin subunit alpha- 65.3 10 0.00036 30.7 5.3 67 4-71 422-499 (529)
27 1w63_A Adapter-related protein 65.0 11 0.00039 31.5 5.7 58 5-62 316-373 (618)
28 1b3u_A Protein (protein phosph 65.0 16 0.00054 28.5 6.2 55 6-60 523-579 (588)
29 2qk1_A Protein STU2; STU2P, XM 64.3 17 0.00058 27.1 6.1 67 6-72 150-224 (249)
30 3ma5_A Tetratricopeptide repea 64.0 15 0.00052 22.4 4.9 43 38-83 24-67 (100)
31 3ul1_B Importin subunit alpha- 63.7 15 0.00051 29.7 6.0 67 4-71 403-480 (510)
32 2ho1_A Type 4 fimbrial biogene 63.0 16 0.00056 24.7 5.3 31 52-82 136-166 (252)
33 3kez_A Putative sugar binding 62.9 13 0.00045 30.3 5.5 53 30-82 166-221 (461)
34 3mcx_A SUSD superfamily protei 61.2 13 0.00045 30.2 5.3 52 30-81 172-226 (477)
35 4db6_A Armadillo repeat protei 60.2 25 0.00087 23.8 5.9 62 5-66 15-81 (210)
36 4db8_A Armadillo-repeat protei 58.4 37 0.0013 23.6 6.6 62 5-66 57-123 (252)
37 3qky_A Outer membrane assembly 57.4 24 0.00081 24.6 5.5 47 39-85 33-80 (261)
38 2jdq_A Importin alpha-1 subuni 57.1 13 0.00045 28.0 4.3 63 5-67 364-442 (450)
39 1wa5_B Importin alpha subunit; 55.1 30 0.001 27.5 6.3 70 4-74 430-515 (530)
40 4db6_A Armadillo repeat protei 55.1 46 0.0016 22.5 6.5 61 4-64 140-205 (210)
41 1oyz_A Hypothetical protein YI 54.9 31 0.001 24.8 5.8 51 8-64 134-184 (280)
42 4g1t_A Interferon-induced prot 54.9 15 0.00053 27.5 4.3 18 63-80 100-117 (472)
43 3ro3_A PINS homolog, G-protein 54.4 25 0.00084 21.2 4.6 24 58-81 130-153 (164)
44 2kc7_A BFR218_protein; tetratr 53.4 14 0.00046 21.7 3.2 50 59-111 37-86 (99)
45 3hdx_A SUSD homolog, SUSD supe 52.4 26 0.00089 28.5 5.6 29 53-81 193-221 (478)
46 3jq1_A SUSD superfamily protei 52.4 26 0.00089 28.8 5.7 52 31-82 151-205 (481)
47 4db8_A Armadillo-repeat protei 50.7 37 0.0013 23.6 5.6 61 5-65 183-248 (252)
48 2l6j_A TPR repeat-containing p 50.1 14 0.00049 21.6 2.9 29 58-86 39-67 (111)
49 2yhc_A BAMD, UPF0169 lipoprote 49.8 34 0.0012 23.6 5.2 43 40-82 23-66 (225)
50 4hxt_A De novo protein OR329; 49.7 59 0.002 22.1 6.7 65 3-67 3-72 (252)
51 3tjz_B Coatomer subunit gamma; 48.4 3.6 0.00012 33.6 -0.1 53 7-59 292-344 (355)
52 3q15_A PSP28, response regulat 48.1 19 0.00066 26.7 3.9 51 46-96 250-300 (378)
53 2kat_A Uncharacterized protein 47.5 23 0.0008 21.4 3.7 25 59-83 55-79 (115)
54 3k9i_A BH0479 protein; putativ 46.1 18 0.0006 22.3 2.9 27 57-83 61-87 (117)
55 2yhc_A BAMD, UPF0169 lipoprote 46.0 35 0.0012 23.5 4.8 42 39-80 165-207 (225)
56 2v5f_A Prolyl 4-hydroxylase su 44.7 21 0.00073 22.4 3.2 29 55-83 44-72 (104)
57 1zl8_A LIN-7; heterodimer, alp 43.9 24 0.00082 22.3 3.2 27 35-61 7-33 (53)
58 1jdh_A Beta-catenin; beta-cate 43.6 55 0.0019 25.3 6.0 58 5-64 463-526 (529)
59 4gcn_A Protein STI-1; structur 43.6 19 0.00065 23.0 2.9 22 62-83 47-68 (127)
60 2kck_A TPR repeat; tetratricop 43.2 45 0.0015 18.9 4.8 16 64-79 47-62 (112)
61 1na3_A Designed protein CTPR2; 42.9 23 0.00077 19.9 2.9 27 57-83 43-69 (91)
62 3syy_A Exonuclease; digest dou 42.7 19 0.00066 26.8 3.2 22 23-44 177-198 (216)
63 3qnk_A Putative lipoprotein; a 42.7 45 0.0015 27.5 5.7 52 31-82 150-207 (517)
64 4ffb_C Protein STU2; tubulin f 42.7 23 0.00079 26.1 3.6 70 7-76 144-220 (278)
65 3rkv_A Putative peptidylprolyl 42.7 20 0.00068 23.2 2.9 28 56-83 96-123 (162)
66 2jdq_A Importin alpha-1 subuni 42.6 73 0.0025 23.9 6.4 63 4-66 236-303 (450)
67 3q15_A PSP28, response regulat 41.7 65 0.0022 23.8 6.0 31 51-81 330-360 (378)
68 3qky_A Outer membrane assembly 41.6 63 0.0022 22.3 5.6 23 61-83 152-174 (261)
69 1na0_A Designed protein CTPR3; 41.3 49 0.0017 19.0 4.3 21 61-81 81-101 (125)
70 2lni_A Stress-induced-phosphop 40.8 30 0.001 20.5 3.3 27 57-83 50-76 (133)
71 3rkv_A Putative peptidylprolyl 40.6 19 0.00067 23.2 2.6 26 58-83 64-89 (162)
72 2bpt_A Importin beta-1 subunit 39.6 45 0.0015 27.5 5.2 66 6-71 99-167 (861)
73 2qk2_A LP04448P; mini spindles 39.3 98 0.0033 21.9 6.4 61 5-67 101-161 (242)
74 3upv_A Heat shock protein STI1 39.0 26 0.00089 21.4 2.9 27 57-83 72-98 (126)
75 3l9t_A Putative uncharacterize 37.4 38 0.0013 26.7 4.3 98 8-112 77-208 (240)
76 3as5_A MAMA; tetratricopeptide 37.3 72 0.0025 19.6 5.1 27 57-83 110-136 (186)
77 3ulq_A Response regulator aspa 37.1 63 0.0021 23.8 5.2 39 46-84 252-291 (383)
78 2z6h_A Catenin beta-1, beta-ca 37.0 71 0.0024 26.3 6.0 62 4-67 459-526 (644)
79 2vgl_A Adaptor protein complex 36.8 86 0.003 26.5 6.6 55 5-59 332-389 (621)
80 3edt_B KLC 2, kinesin light ch 36.1 52 0.0018 21.9 4.3 36 51-86 121-156 (283)
81 1w63_A Adapter-related protein 35.9 77 0.0026 26.5 6.1 59 7-68 112-171 (618)
82 1elr_A TPR2A-domain of HOP; HO 35.8 63 0.0021 18.8 4.2 26 58-83 39-64 (131)
83 4fdd_A Transportin-1; heat rep 35.4 50 0.0017 28.0 4.9 65 6-73 94-162 (852)
84 4gco_A Protein STI-1; structur 35.4 30 0.001 22.1 2.9 26 58-83 48-73 (126)
85 1u6g_C TIP120 protein, CAND1; 35.4 2.1E+02 0.0072 25.3 9.1 66 6-71 90-166 (1230)
86 3edt_B KLC 2, kinesin light ch 34.9 56 0.0019 21.8 4.3 36 51-86 79-114 (283)
87 3u3w_A Transcriptional activat 34.9 19 0.00066 25.9 2.0 51 52-102 231-282 (293)
88 2vgl_B AP-2 complex subunit be 34.8 47 0.0016 27.4 4.6 61 4-65 15-75 (591)
89 3ulq_A Response regulator aspa 34.6 62 0.0021 23.8 4.8 32 52-83 334-365 (383)
90 3vtx_A MAMA; tetratricopeptide 34.4 35 0.0012 22.1 3.1 28 56-83 106-133 (184)
91 3nf1_A KLC 1, kinesin light ch 34.4 1.1E+02 0.0037 20.8 5.8 52 34-85 43-97 (311)
92 3i4g_A SUSD-like carbohydrate 33.6 67 0.0023 26.8 5.4 53 30-82 163-223 (528)
93 4fdd_A Transportin-1; heat rep 33.5 52 0.0018 27.9 4.7 58 6-63 178-239 (852)
94 2vxg_A LD41624, GE-1, CG6181-P 33.5 20 0.00068 25.9 1.9 16 70-85 13-28 (139)
95 2fo7_A Synthetic consensus TPR 33.4 42 0.0014 19.4 3.1 22 59-80 71-92 (136)
96 2fbn_A 70 kDa peptidylprolyl i 32.8 84 0.0029 20.8 4.9 46 54-102 119-164 (198)
97 2vgl_B AP-2 complex subunit be 32.0 80 0.0027 26.0 5.5 59 7-68 91-150 (591)
98 2fbn_A 70 kDa peptidylprolyl i 31.9 1E+02 0.0036 20.3 5.3 27 58-84 89-115 (198)
99 4g1t_A Interferon-induced prot 31.9 63 0.0022 24.1 4.5 22 62-83 56-77 (472)
100 3q49_B STIP1 homology and U bo 31.8 40 0.0014 20.5 2.9 29 54-82 74-102 (137)
101 1lrv_A LRV, leucine-rich repea 31.8 27 0.00093 26.7 2.5 42 7-61 175-216 (244)
102 2e2e_A Formate-dependent nitri 31.2 44 0.0015 21.6 3.2 31 55-85 113-143 (177)
103 3u4t_A TPR repeat-containing p 31.1 1E+02 0.0035 20.8 5.2 25 61-85 112-136 (272)
104 1a17_A Serine/threonine protei 30.6 96 0.0033 19.0 5.1 31 54-84 78-108 (166)
105 1xnf_A Lipoprotein NLPI; TPR, 30.5 75 0.0026 21.4 4.4 26 58-83 78-103 (275)
106 4b8j_A Importin subunit alpha- 30.5 1.4E+02 0.0046 23.5 6.4 64 4-67 288-357 (528)
107 1wa5_B Importin alpha subunit; 30.4 1.8E+02 0.0062 22.9 7.2 65 5-69 344-413 (530)
108 1xm9_A Plakophilin 1; armadill 30.3 1.7E+02 0.0058 23.2 7.1 66 4-69 46-117 (457)
109 1jdh_A Beta-catenin; beta-cate 29.9 1.6E+02 0.0054 22.7 6.6 56 4-59 103-163 (529)
110 1xqr_A HSPBP1 protein; armadil 29.9 1.7E+02 0.0057 22.5 6.8 64 5-68 127-196 (296)
111 2qfc_A PLCR protein; TPR, HTH, 29.6 26 0.00088 25.2 1.9 40 56-95 235-275 (293)
112 3nf1_A KLC 1, kinesin light ch 29.5 53 0.0018 22.4 3.5 36 50-85 20-55 (311)
113 3otn_A SUSD superfamily protei 29.3 46 0.0016 27.1 3.6 32 50-81 181-221 (482)
114 3qwp_A SET and MYND domain-con 28.8 82 0.0028 25.4 5.0 23 63-85 335-357 (429)
115 1elw_A TPR1-domain of HOP; HOP 28.7 84 0.0029 17.8 5.1 28 57-84 72-99 (118)
116 3ckc_A SUSD; TPR repeat, carbo 28.6 91 0.0031 25.1 5.2 52 30-81 165-227 (527)
117 3l22_A SUSD superfamily protei 28.4 46 0.0016 26.8 3.5 31 53-83 197-227 (441)
118 2q7f_A YRRB protein; TPR, prot 28.3 51 0.0017 21.8 3.1 27 57-83 91-117 (243)
119 2qfc_A PLCR protein; TPR, HTH, 28.2 1.1E+02 0.0037 21.8 5.1 25 59-83 198-222 (293)
120 2dba_A Smooth muscle cell asso 28.0 1E+02 0.0035 18.5 5.0 24 59-82 101-124 (148)
121 2xcb_A PCRH, regulatory protei 27.3 50 0.0017 20.9 2.9 25 59-83 54-78 (142)
122 3bee_A Putative YFRE protein; 27.2 52 0.0018 20.8 2.9 27 54-80 40-66 (93)
123 3uq3_A Heat shock protein STI1 27.2 80 0.0027 20.8 4.0 29 57-85 79-107 (258)
124 3efg_A Protein SLYX homolog; x 27.1 88 0.003 20.4 4.1 33 17-49 24-56 (78)
125 2vyi_A SGTA protein; chaperone 26.6 97 0.0033 17.8 6.6 20 61-80 84-103 (131)
126 4abn_A Tetratricopeptide repea 26.3 1.5E+02 0.0052 23.3 6.1 31 53-83 98-129 (474)
127 3u3w_A Transcriptional activat 26.2 1.8E+02 0.006 20.7 7.0 24 60-83 158-181 (293)
128 3ieg_A DNAJ homolog subfamily 26.0 86 0.0029 21.7 4.1 28 56-83 70-97 (359)
129 2z6g_A B-catenin; FULL-length, 25.5 1.7E+02 0.0059 25.2 6.7 64 5-68 596-663 (780)
130 3ieg_A DNAJ homolog subfamily 25.5 99 0.0034 21.4 4.3 28 56-83 305-332 (359)
131 2vgx_A Chaperone SYCD; alterna 25.3 52 0.0018 21.5 2.8 31 50-83 85-115 (148)
132 3hym_B Cell division cycle pro 24.4 1.4E+02 0.0049 20.4 5.0 42 58-102 271-312 (330)
133 1ibr_B P95, importin beta-1 su 23.8 78 0.0027 23.7 3.7 41 4-44 410-452 (462)
134 4gns_B Protein CSD3, chitin bi 23.7 37 0.0013 30.5 2.2 27 64-91 378-404 (754)
135 3sm4_A Exonuclease; homologous 23.6 41 0.0014 25.4 2.2 22 23-44 199-220 (229)
136 1qgr_A Protein (importin beta 22.2 2.2E+02 0.0074 23.5 6.4 64 2-66 1-64 (876)
137 3ihv_A SUSD homolog; NP_813570 22.1 1.2E+02 0.0042 24.8 4.9 52 30-81 159-228 (535)
138 3cv0_A Peroxisome targeting si 22.0 1.2E+02 0.0041 20.8 4.2 26 58-83 90-115 (327)
139 2bpt_A Importin beta-1 subunit 21.9 2.6E+02 0.0088 22.9 6.8 66 6-71 601-671 (861)
140 2kou_A Dicer-like protein 4; A 21.7 38 0.0013 22.9 1.5 23 55-77 66-88 (102)
141 3tt9_A Plakophilin-2; cell adh 21.6 2.1E+02 0.0071 21.5 5.8 57 4-60 54-116 (233)
142 2af7_A Gamma-carboxymuconolact 21.6 78 0.0027 21.1 3.1 55 30-84 26-84 (125)
143 3gyz_A Chaperone protein IPGC; 21.5 72 0.0025 21.5 2.9 25 59-83 72-96 (151)
144 4i17_A Hypothetical protein; T 21.4 83 0.0028 21.1 3.2 42 40-83 61-102 (228)
145 2fip_A Late genes activator; p 20.4 5.9 0.0002 28.4 -2.9 33 6-38 77-112 (115)
146 1hh8_A P67PHOX, NCF-2, neutrop 20.3 81 0.0028 20.6 2.9 32 55-86 69-100 (213)
147 3ro2_A PINS homolog, G-protein 20.3 1.7E+02 0.0059 19.7 4.7 28 57-84 263-290 (338)
No 1
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=100.00 E-value=9e-47 Score=344.38 Aligned_cols=112 Identities=36% Similarity=0.682 Sum_probs=109.8
Q ss_pred CCcHHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHH
Q psy5990 1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYA 80 (119)
Q Consensus 1 ~tSaag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yA 80 (119)
+|+|+|+|+||+|+|++||.|||++||++||+||+|||++|++||.||||++||+|+||||||||||||||+|++||+||
T Consensus 14 ~~~a~~~l~lL~e~~~~lk~~aL~~l~~~vd~~w~eia~~i~~ie~l~ed~~f~~r~laalvaSkvyy~Lg~~~~al~ya 93 (963)
T 4ady_A 14 LTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTFSDREMAALIASKVYYNLGEYESAVKYA 93 (963)
T ss_dssp -CCSHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHcCCCcchHHHHHHHHHHHheeccchHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCChhHHHhhhhhhhhHHHHHhhh
Q psy5990 81 LGAGDLFDVRNDTVYVKTIICKYFCISLSTYRYS 114 (119)
Q Consensus 81 L~AG~lFdv~~~seYvetiisk~~cID~Yi~~~~ 114 (119)
|+||++||++++||||+|||+| |||+||+.|.
T Consensus 94 L~aG~~fd~~~~seYv~tiis~--cid~y~~~~~ 125 (963)
T 4ady_A 94 LAAKDRFDIDEKSQFVETIVSK--SIEMYVQEAS 125 (963)
T ss_dssp HHHGGGSCTTSCSHHHHHHHHH--HHHHHHHHHH
T ss_pred HhCCCcCCCCCcchHHHHHHHH--HHHHHHHHHh
Confidence 9999999999999999999999 9999999885
No 2
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=84.37 E-value=3.2 Score=27.32 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=56.9
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
...++.+|+++++.+|..|+..|-.+-+ .+.++.+..+.+|++-.-|.-|+....++ |+ .+++..-+..
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~----~~-~~a~~~L~~~ 112 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSLEQI----GG-ERVRAAMEKL 112 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH----CS-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc-HHHHHHHHHH
Confidence 4568899999999999999999987765 35677787888888887888887776654 43 3333332222
Q ss_pred CCCCCCCCCChhHHHhhhh
Q psy5990 84 GDLFDVRNDTVYVKTIICK 102 (119)
Q Consensus 84 G~lFdv~~~seYvetiisk 102 (119)
= ..++..|......
T Consensus 113 l-----~d~~~~vr~~A~~ 126 (131)
T 1te4_A 113 A-----ETGTGFARKVAVN 126 (131)
T ss_dssp T-----TSCCTHHHHHHHH
T ss_pred H-----hCCCHHHHHHHHH
Confidence 1 1345566665555
No 3
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.68 E-value=2.2 Score=31.56 Aligned_cols=44 Identities=9% Similarity=0.161 Sum_probs=36.8
Q ss_pred HHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHH
Q psy5990 36 EVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYA 80 (119)
Q Consensus 36 EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yA 80 (119)
+|-..|..+|.|+.+..-..|+.--.+| --||.||+|++|++|.
T Consensus 57 di~~GI~LLe~l~~~~~~~~RdcLYyLA-vg~ykl~~Y~~Ar~y~ 100 (144)
T 1y8m_A 57 DERLGVKILTDIYKEAESRRRECLYYLT-IGCYKLGEYSMAKRYV 100 (144)
T ss_dssp HHHHHHHHHHHHHHHCCSTHHHHHHHHH-HHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccchhHHHHHHH-HHHHHhhhHHHHHHHH
Confidence 4667888999999987777888776665 4699999999999986
No 4
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=81.39 E-value=7.8 Score=28.76 Aligned_cols=61 Identities=8% Similarity=0.062 Sum_probs=41.1
Q ss_pred HHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHHHh
Q psy5990 21 FSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALG 82 (119)
Q Consensus 21 ~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~ 82 (119)
.|+..|-...... .+....+..++.+.++...|+...+-.....+|.+.|++++|++.--.
T Consensus 66 ~a~~~la~~~~~~-~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 66 QAVRMFAEYLASH-SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp HHHHHHHHHHHCS-TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC-CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC
Confidence 3444444333321 345667777888877766777777777778888888888888876554
No 5
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=81.09 E-value=3.9 Score=28.30 Aligned_cols=56 Identities=20% Similarity=0.098 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHH
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASK 65 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSK 65 (119)
...++.+|.++++.+|..|++.|-.+-+ .+.++.+..+..|+.-.-|..|+...++
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~aL~~ 76 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADALGQ 76 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 4456777777777777777777766544 2455555556666554455555544444
No 6
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=81.07 E-value=3.6 Score=28.30 Aligned_cols=54 Identities=19% Similarity=0.071 Sum_probs=29.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHH
Q psy5990 5 AGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVAS 64 (119)
Q Consensus 5 ag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaS 64 (119)
..++.+|+.+++.+|..|++.|-.+-+ .+.++.+..+.+|+.-.-|..|+....
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~~L~ 70 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADALG 70 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 446667777777777777666665443 134444445555554444555444433
No 7
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=81.03 E-value=3.9 Score=28.33 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=34.9
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHH
Q psy5990 5 AGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKV 66 (119)
Q Consensus 5 ag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKV 66 (119)
..++.+|.++++.++..|+..|-.+-+ .+.++.+..+.+|++..-|..|+....++
T Consensus 84 ~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 84 EPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 446666777777777777777665543 24556666666676666666666555543
No 8
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=79.47 E-value=2.4 Score=31.04 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=32.2
Q ss_pred HHHhhHHHHHHHhhCCCCC-chhHHHHHHHHHhhhccChHHHHHHH
Q psy5990 36 EVSEAIQKIEILHEDKGFP-QYKLAALVASKVYFHLGSFSDSLQYA 80 (119)
Q Consensus 36 EIsd~i~~IE~LyED~~F~-~R~lAALvaSKVyyhLgey~~aL~yA 80 (119)
++-..|..+|.++++. .| .|.=+=.-.+-.||.+|+|++|++|.
T Consensus 50 ~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 50 DIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4667888899999865 55 33333344556789999999999985
No 9
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=79.30 E-value=4.8 Score=27.60 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHH
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASK 65 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSK 65 (119)
...++.+|.++++.++..|++.|-.+-+. +.++.+..+.+|++-.-|.-|+....+
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~l~d~~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIGDE------RAVEPLIKALKDEDWFVRIAAAFALGE 133 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCG------GGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCcH------HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34566667777777777777776665432 345555555566655555555555444
No 10
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=79.20 E-value=2.7 Score=30.05 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=31.9
Q ss_pred HHHhhHHHHHHHhhCCCCC--chhHHHHHHHHHhhhccChHHHHHHH
Q psy5990 36 EVSEAIQKIEILHEDKGFP--QYKLAALVASKVYFHLGSFSDSLQYA 80 (119)
Q Consensus 36 EIsd~i~~IE~LyED~~F~--~R~lAALvaSKVyyhLgey~~aL~yA 80 (119)
+|-..|..+|.|+.+. .| .|+.- ...+--+|.||+|++|++|.
T Consensus 53 d~~~GI~lLe~l~~~~-~p~~~Rd~l-Y~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 53 DIRKGIVLLEELLPKG-SKEEQRDYV-FYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHTTTS-CHHHHHHHH-HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CcchHHHHH-HHHHHHHHHhhhHHHHHHHH
Confidence 4666889999999874 44 44443 34446799999999999885
No 11
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=78.47 E-value=4.8 Score=28.91 Aligned_cols=68 Identities=7% Similarity=-0.004 Sum_probs=55.9
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhhhhcchH------HHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccC
Q psy5990 5 AGVISLLDDPMIELKEFSLKKLNDIVDDFWP------EVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGS 72 (119)
Q Consensus 5 ag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~------EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLge 72 (119)
..++..|+.+++.+|..++.-|..++..+-| .+..-++.+-.+.+|+.-.-|.-|......++-++|+
T Consensus 136 ~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 136 ESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 4567788999999999999999998765433 3456677778888999888999999999999999984
No 12
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=78.16 E-value=4.7 Score=29.20 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=37.1
Q ss_pred cHHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHH
Q psy5990 3 TVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASK 65 (119)
Q Consensus 3 Saag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSK 65 (119)
+...++.+|..+++.++..|+..|-.+-+ .+.++.+-.+.+|+...-|..|+....+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 80 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG------QDAVRLAIEFCSDKNYIRRDIGAFILGQ 80 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC------chHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45677788888888888888777766543 2455566666666665566666554443
No 13
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=78.13 E-value=5.9 Score=24.15 Aligned_cols=31 Identities=10% Similarity=-0.072 Sum_probs=16.9
Q ss_pred CCCCCchhHHHHHHHHHhhhccChHHHHHHH
Q psy5990 50 DKGFPQYKLAALVASKVYFHLGSFSDSLQYA 80 (119)
Q Consensus 50 D~~F~~R~lAALvaSKVyyhLgey~~aL~yA 80 (119)
++..+...-+-.....+|+.+|++++|+++-
T Consensus 69 ~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 99 (129)
T 2xev_A 69 YPTHDKAAGGLLKLGLSQYGEGKNTEAQQTL 99 (129)
T ss_dssp CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3333333445555566666666666666554
No 14
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=75.00 E-value=2.2 Score=28.36 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=9.0
Q ss_pred HHHHhhhccChHHHHHH
Q psy5990 63 ASKVYFHLGSFSDSLQY 79 (119)
Q Consensus 63 aSKVyyhLgey~~aL~y 79 (119)
...+|+.+|++++|+.+
T Consensus 71 lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 71 LGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCchHHHHHH
Confidence 34555555555555544
No 15
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=74.11 E-value=4.8 Score=26.43 Aligned_cols=53 Identities=23% Similarity=0.129 Sum_probs=40.2
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHH
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALV 62 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALv 62 (119)
...++.+|+++++.++..|...|-.+-+ .+.++.+..+.+|+.-.-|.-|+.-
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~~------~~a~~~L~~~l~d~~~~vr~~A~~a 127 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIGG------ERVRAAMEKLAETGTGFARKVAVNY 127 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHCS------HHHHHHHHHHTTSCCTHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3567888999999999999999987654 3567777788888776666666543
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=70.93 E-value=16 Score=25.06 Aligned_cols=68 Identities=12% Similarity=0.041 Sum_probs=51.0
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhhhhcchH---HH--HhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccC
Q psy5990 5 AGVISLLDDPMIELKEFSLKKLNDIVDDFWP---EV--SEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGS 72 (119)
Q Consensus 5 ag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~---EI--sd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLge 72 (119)
..++.+|..+++.++..|+.-|-.+....-. .+ +..++.+-.+.++++..-|+.|+...+.+..+-+.
T Consensus 173 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 173 EVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 4578999999999999999999888753322 12 34577888888888777788888888877665443
No 17
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=70.62 E-value=5.3 Score=29.11 Aligned_cols=45 Identities=9% Similarity=0.128 Sum_probs=34.4
Q ss_pred HHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHHH
Q psy5990 36 EVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYAL 81 (119)
Q Consensus 36 EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yAL 81 (119)
++-..|..+|.|+.+..=..|+.--.+| --+|.||+|++|++|+=
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLA-vg~yklgdY~~Ar~y~d 102 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLT-IGCYKLGEYSMAKRYVD 102 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHH-HHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHH-HHHHHhhhHHHHHHHHH
Confidence 5667888899999876323566665554 56999999999999974
No 18
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=70.41 E-value=11 Score=22.79 Aligned_cols=44 Identities=14% Similarity=-0.097 Sum_probs=29.7
Q ss_pred hHHHHHHHhh-CCCCCchhHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 40 AIQKIEILHE-DKGFPQYKLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 40 ~i~~IE~LyE-D~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
++...+.+.+ ++..+...-+-.....+|+.+|+|++|+.+.-.+
T Consensus 21 A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~ 65 (129)
T 2xev_A 21 ASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL 65 (129)
T ss_dssp HHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3333333333 5555555567777889999999999998876444
No 19
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=70.31 E-value=12 Score=24.49 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=26.8
Q ss_pred hHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 40 AIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 40 ~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
++...+...+.+..|....+-.....+|+.+|++++|+.+.-.+
T Consensus 96 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 139 (225)
T 2vq2_A 96 SMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS 139 (225)
T ss_dssp HHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444454555666666666677777777777777665443
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=69.98 E-value=10 Score=30.13 Aligned_cols=65 Identities=23% Similarity=0.298 Sum_probs=48.1
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhhhcc--------------hHHHH--hhHHHHHHHhhCCCCCchhHHHHHHHHHh
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIVDDF--------------WPEVS--EAIQKIEILHEDKGFPQYKLAALVASKVY 67 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vVd~~--------------W~EIs--d~i~~IE~LyED~~F~~R~lAALvaSKVy 67 (119)
...++.+|+.++++++..|+.-|..++... ...|. +.+++|+.|..+++-.-++.|..+..+ |
T Consensus 416 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~-~ 494 (528)
T 4b8j_A 416 IKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA-Y 494 (528)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH-H
Confidence 456889999999999999999999887532 22233 347888999877766677888777766 4
Q ss_pred hh
Q psy5990 68 FH 69 (119)
Q Consensus 68 yh 69 (119)
|.
T Consensus 495 ~~ 496 (528)
T 4b8j_A 495 WM 496 (528)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 21
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=69.14 E-value=9.4 Score=31.37 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=37.3
Q ss_pred hhcchHHHHhhHHHHHHHhhC--------CCCCchhHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 30 VDDFWPEVSEAIQKIEILHED--------KGFPQYKLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 30 Vd~~W~EIsd~i~~IE~LyED--------~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
+.+.|..|-+.|..-+.+..+ ..-+.+.-|..+.+|||.+.|+|++|..+|-..
T Consensus 156 ~~evy~~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~v 217 (460)
T 3snx_A 156 VAQVYQQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAA 217 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 445555555555444444321 234677888889999999999999999998543
No 22
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=68.27 E-value=12 Score=29.17 Aligned_cols=66 Identities=17% Similarity=0.296 Sum_probs=50.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhhhhcc---hHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhcc
Q psy5990 5 AGVISLLDDPMIELKEFSLKKLNDIVDDF---WPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLG 71 (119)
Q Consensus 5 ag~laLL~E~d~~Lk~~AL~~L~~vVd~~---W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLg 71 (119)
..++.+|.++++.+|..|++.|-.++..+ |. ...-++.+..+.+|++..-|.-|....+++-=++|
T Consensus 444 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~ 512 (588)
T 1b3u_A 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA-HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512 (588)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHH-HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhH-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC
Confidence 34667889999999999999998876543 43 45667778888889888889888887777765555
No 23
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=67.90 E-value=6.5 Score=31.51 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=33.4
Q ss_pred HhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHHH
Q psy5990 38 SEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYAL 81 (119)
Q Consensus 38 sd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yAL 81 (119)
++.+..++.+.++. +....+.+++..+|++.|++++||+..-
T Consensus 83 ~~a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~ 124 (310)
T 3mv2_B 83 TKNIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCV 124 (310)
T ss_dssp TTCCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34788899888875 3335666888999999999999999843
No 24
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=66.09 E-value=11 Score=31.17 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=36.1
Q ss_pred hhcchHHHHhhHHHHHHHh-h-----CCCCCchhHHHHHHHHHhhhccChHHHHHHHHh
Q psy5990 30 VDDFWPEVSEAIQKIEILH-E-----DKGFPQYKLAALVASKVYFHLGSFSDSLQYALG 82 (119)
Q Consensus 30 Vd~~W~EIsd~i~~IE~Ly-E-----D~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~ 82 (119)
+++.|..|-+.|...+.+. + +..-+.+--|-.+.+|||.+.|+|++|..+|-.
T Consensus 170 ~~evy~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~ 228 (495)
T 3lew_A 170 VSEVYAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDK 228 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4455555555555444443 1 223457777778889999999999999999853
No 25
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=65.59 E-value=11 Score=30.58 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=36.7
Q ss_pred hhcchHHHHhhHHHHHHHhh---CCCCCchhHHHHHHHHHhhhccChHHHHHHHH
Q psy5990 30 VDDFWPEVSEAIQKIEILHE---DKGFPQYKLAALVASKVYFHLGSFSDSLQYAL 81 (119)
Q Consensus 30 Vd~~W~EIsd~i~~IE~LyE---D~~F~~R~lAALvaSKVyyhLgey~~aL~yAL 81 (119)
+++.|..|-..|.....+.. +..-+.+--|..+.+|||.+.|+|++|..+|-
T Consensus 160 ~~evy~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~ 214 (454)
T 3myv_A 160 VAQAYDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLAD 214 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34455555555554444432 33456788888899999999999999999885
No 26
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=65.25 E-value=10 Score=30.68 Aligned_cols=67 Identities=21% Similarity=0.355 Sum_probs=48.9
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhhh---------cc--hHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhcc
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIVD---------DF--WPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLG 71 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vVd---------~~--W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLg 71 (119)
..+++.||+.+|+++...+|..|..+.. .+ .-|=++.+++||.|-..++-.=++.|.-+..| ||--+
T Consensus 422 i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~-yf~~~ 499 (529)
T 3tpo_A 422 IEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK-YFSVE 499 (529)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHH-HC---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH-HCCCc
Confidence 3568899999999999999998887752 11 22334578999999888877778888777766 55443
No 27
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=65.05 E-value=11 Score=31.52 Aligned_cols=58 Identities=14% Similarity=-0.019 Sum_probs=42.0
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHH
Q psy5990 5 AGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALV 62 (119)
Q Consensus 5 ag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALv 62 (119)
..+..+|..+++.+|..||..|+.++...=.-+.++.+.|..+..|+.-.=|..|.-+
T Consensus 316 ~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alel 373 (618)
T 1w63_A 316 NILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMEL 373 (618)
T ss_dssp HHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHH
Confidence 3456678889999999999999998876433466778788777777665545555433
No 28
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=65.02 E-value=16 Score=28.54 Aligned_cols=55 Identities=22% Similarity=0.196 Sum_probs=28.3
Q ss_pred HHHHhcCCCchHHHHHHHHHHhhhhhcchHHH--HhhHHHHHHHhhCCCCCchhHHH
Q psy5990 6 GVISLLDDPMIELKEFSLKKLNDIVDDFWPEV--SEAIQKIEILHEDKGFPQYKLAA 60 (119)
Q Consensus 6 g~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EI--sd~i~~IE~LyED~~F~~R~lAA 60 (119)
.++.+|+++++++|..+++.|..++..+=++. ..-++.++.|.+|+.-.-|+.|+
T Consensus 523 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~ 579 (588)
T 1b3u_A 523 TVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQ 579 (588)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHH
Confidence 34555666666666666666665554332222 23444555555555544454443
No 29
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=64.34 E-value=17 Score=27.10 Aligned_cols=67 Identities=6% Similarity=0.014 Sum_probs=57.0
Q ss_pred HHHHhcCCCchHHHHHHHHHHhhhhhcc-------hHHH-HhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccC
Q psy5990 6 GVISLLDDPMIELKEFSLKKLNDIVDDF-------WPEV-SEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGS 72 (119)
Q Consensus 6 g~laLL~E~d~~Lk~~AL~~L~~vVd~~-------W~EI-sd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLge 72 (119)
-++..|+.+.+.+|.-++.-|..+++.. =+.+ ..-++.+..+.+|+.=+-|+-|.-...+++-++|+
T Consensus 150 ~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 150 DILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 4667788899999999999999999653 2456 77888888899999888899999999999999997
No 30
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=63.96 E-value=15 Score=22.36 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=27.9
Q ss_pred HhhHHHHHHHh-hCCCCCchhHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 38 SEAIQKIEILH-EDKGFPQYKLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 38 sd~i~~IE~Ly-ED~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
.+++...+... -|+.++. |-.....+|+.+|++++|+++.-.|
T Consensus 24 ~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 24 SRALALFEELVETDPDYVG---TYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHSTTCTH---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444433 3555554 5556679999999999998875443
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=63.71 E-value=15 Score=29.72 Aligned_cols=67 Identities=21% Similarity=0.351 Sum_probs=47.6
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhhhc---------c--hHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhcc
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIVDD---------F--WPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLG 71 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vVd~---------~--W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLg 71 (119)
..+++.||+.+|+++...+|+-|..+..- + .-|=++.+++||.|-..++-.=++.|.-+.-| ||--+
T Consensus 403 i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~-yf~~~ 480 (510)
T 3ul1_B 403 IEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK-YFSVE 480 (510)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH-HCC--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH-HCCCc
Confidence 35688999999999999999988876531 1 12234568899999887776677777766655 44433
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=62.98 E-value=16 Score=24.66 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=15.7
Q ss_pred CCCchhHHHHHHHHHhhhccChHHHHHHHHh
Q psy5990 52 GFPQYKLAALVASKVYFHLGSFSDSLQYALG 82 (119)
Q Consensus 52 ~F~~R~lAALvaSKVyyhLgey~~aL~yAL~ 82 (119)
..|....+-.....+|+.+|++++|+++...
T Consensus 136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (252)
T 2ho1_A 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEK 166 (252)
T ss_dssp TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444455555555555555554433
No 33
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=62.94 E-value=13 Score=30.26 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=38.0
Q ss_pred hhcchHHHHhhHHHHHHHhh---CCCCCchhHHHHHHHHHhhhccChHHHHHHHHh
Q psy5990 30 VDDFWPEVSEAIQKIEILHE---DKGFPQYKLAALVASKVYFHLGSFSDSLQYALG 82 (119)
Q Consensus 30 Vd~~W~EIsd~i~~IE~LyE---D~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~ 82 (119)
+.+.|..|-+.|...+.+.. +...+.+--|..+.+|||.+.|+|++|..+|-.
T Consensus 166 ~~evy~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~ 221 (461)
T 3kez_A 166 VAECYTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAEN 221 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44555665555555544443 334567888888999999999999999999854
No 34
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=61.18 E-value=13 Score=30.21 Aligned_cols=52 Identities=19% Similarity=0.350 Sum_probs=35.7
Q ss_pred hhcchHHHHhhHHHHHHHhh---CCCCCchhHHHHHHHHHhhhccChHHHHHHHH
Q psy5990 30 VDDFWPEVSEAIQKIEILHE---DKGFPQYKLAALVASKVYFHLGSFSDSLQYAL 81 (119)
Q Consensus 30 Vd~~W~EIsd~i~~IE~LyE---D~~F~~R~lAALvaSKVyyhLgey~~aL~yAL 81 (119)
+++.|..|-..|..-..+.. +..-..+--|..+.+|||.+.|+|++|..+|-
T Consensus 172 ~~evy~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~ 226 (477)
T 3mcx_A 172 VAQCYEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAAT 226 (477)
T ss_dssp HHHHHHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34445555544444433332 23456788888899999999999999999985
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=60.17 E-value=25 Score=23.80 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=44.3
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhhhh---cchHHHH--hhHHHHHHHhhCCCCCchhHHHHHHHHH
Q psy5990 5 AGVISLLDDPMIELKEFSLKKLNDIVD---DFWPEVS--EAIQKIEILHEDKGFPQYKLAALVASKV 66 (119)
Q Consensus 5 ag~laLL~E~d~~Lk~~AL~~L~~vVd---~~W~EIs--d~i~~IE~LyED~~F~~R~lAALvaSKV 66 (119)
..+..||..++++++..|+..|-.+.. +....|. ..++.+-.+..+++-.-|+-|+.....+
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 357889999999999999999988773 4444444 5678787777776544566665555444
No 36
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=58.36 E-value=37 Score=23.58 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=45.6
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhhhh---cchHHHHh--hHHHHHHHhhCCCCCchhHHHHHHHHH
Q psy5990 5 AGVISLLDDPMIELKEFSLKKLNDIVD---DFWPEVSE--AIQKIEILHEDKGFPQYKLAALVASKV 66 (119)
Q Consensus 5 ag~laLL~E~d~~Lk~~AL~~L~~vVd---~~W~EIsd--~i~~IE~LyED~~F~~R~lAALvaSKV 66 (119)
..++.+|..++++++..|+.-|..+.. +....+.+ .++.+-.+..+++-.-|+.|+...+.+
T Consensus 57 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 123 (252)
T 4db8_A 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 457889999999999999999988774 44555544 688888888887655566666555544
No 37
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=57.35 E-value=24 Score=24.58 Aligned_cols=47 Identities=9% Similarity=0.015 Sum_probs=32.3
Q ss_pred hhHHHHHHHhh-CCCCCchhHHHHHHHHHhhhccChHHHHHHHHhCCC
Q psy5990 39 EAIQKIEILHE-DKGFPQYKLAALVASKVYFHLGSFSDSLQYALGAGD 85 (119)
Q Consensus 39 d~i~~IE~LyE-D~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~AG~ 85 (119)
+++...+.+.+ ++..|...-|-.....+|+.+|+|++|+.+--.+=.
T Consensus 33 ~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 33 RAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp HHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 34444444443 455555577778888999999999999987655433
No 38
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=57.08 E-value=13 Score=28.04 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=42.2
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhhhhcc----------------hHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHh
Q psy5990 5 AGVISLLDDPMIELKEFSLKKLNDIVDDF----------------WPEVSEAIQKIEILHEDKGFPQYKLAALVASKVY 67 (119)
Q Consensus 5 ag~laLL~E~d~~Lk~~AL~~L~~vVd~~----------------W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVy 67 (119)
..++.+|+.++++++..|+..|..++..- .-+-.+.+++|+.|-++++..-|+.|.-+..+.|
T Consensus 364 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 364 KPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 45788999999999999999888776411 1111234577888877766555666655555444
No 39
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=55.14 E-value=30 Score=27.54 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=48.5
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhhhcc--h------------HHH--HhhHHHHHHHhhCCCCCchhHHHHHHHHHh
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIVDDF--W------------PEV--SEAIQKIEILHEDKGFPQYKLAALVASKVY 67 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vVd~~--W------------~EI--sd~i~~IE~LyED~~F~~R~lAALvaSKVy 67 (119)
...++.+|+.+++.++..|+.-|..++..- + ..| ++.+++|+.|.++++-.-++.|.-+..+ |
T Consensus 430 l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~-~ 508 (530)
T 1wa5_B 430 IKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET-Y 508 (530)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH-H
Confidence 356788999999999999999998876521 2 123 2348889999988876667777666655 4
Q ss_pred hhccChH
Q psy5990 68 FHLGSFS 74 (119)
Q Consensus 68 yhLgey~ 74 (119)
|.-++.+
T Consensus 509 ~~~~~~~ 515 (530)
T 1wa5_B 509 FGEEEDA 515 (530)
T ss_dssp SSSCC--
T ss_pred CCccccc
Confidence 4445543
No 40
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=55.11 E-value=46 Score=22.48 Aligned_cols=61 Identities=21% Similarity=0.222 Sum_probs=43.3
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhhhcc---hHHH--HhhHHHHHHHhhCCCCCchhHHHHHHH
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIVDDF---WPEV--SEAIQKIEILHEDKGFPQYKLAALVAS 64 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vVd~~---W~EI--sd~i~~IE~LyED~~F~~R~lAALvaS 64 (119)
...++.+|+.++++++..|+.-|..+.... =..+ ...++.+..+..+++-.-|+-|+....
T Consensus 140 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 205 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 356788999999999999999998887531 1111 246788888888877666666655443
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=54.94 E-value=31 Score=24.77 Aligned_cols=51 Identities=16% Similarity=0.030 Sum_probs=22.4
Q ss_pred HHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHH
Q psy5990 8 ISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVAS 64 (119)
Q Consensus 8 laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaS 64 (119)
+.+|..+++.++..|...|-.+-+ .+.++.+..+..|+.-.-|.-|+....
T Consensus 134 ~~~l~d~~~~vR~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~ 184 (280)
T 1oyz_A 134 QITAFDKSTNVRRATAFAISVIND------KATIPLLINLLKDPNGDVRNWAAFAIN 184 (280)
T ss_dssp HHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344555555555555555444332 123444444444444444444444333
No 42
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=54.85 E-value=15 Score=27.52 Aligned_cols=18 Identities=39% Similarity=0.726 Sum_probs=15.3
Q ss_pred HHHHhhhccChHHHHHHH
Q psy5990 63 ASKVYFHLGSFSDSLQYA 80 (119)
Q Consensus 63 aSKVyyhLgey~~aL~yA 80 (119)
...||+++|+|++|+.|-
T Consensus 100 la~~y~~~g~~~~A~~~~ 117 (472)
T 4g1t_A 100 YAWVYYHMGRLSDVQIYV 117 (472)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHH
Confidence 357999999999998874
No 43
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=54.35 E-value=25 Score=21.21 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhhccChHHHHHHHH
Q psy5990 58 LAALVASKVYFHLGSFSDSLQYAL 81 (119)
Q Consensus 58 lAALvaSKVyyhLgey~~aL~yAL 81 (119)
.+-...+.+|+.+|++++|+++.-
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Confidence 334444556666666666665543
No 44
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=53.41 E-value=14 Score=21.73 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhccChHHHHHHHHhCCCCCCCCCCChhHHHhhhhhhhhHHHHH
Q psy5990 59 AALVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISLSTY 111 (119)
Q Consensus 59 AALvaSKVyyhLgey~~aL~yAL~AG~lFdv~~~seYvetiisk~~cID~Yi~ 111 (119)
+-.....+|+.+|++++|+++--.+=.+ +++...-+....+.+ ++..|-+
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~--a~~~~~~ 86 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIEL-NPDSPALQARKMVMD--ILNFYNK 86 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSTHHHHHHHHHH--HHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHH--HHHHHHH
Confidence 5566679999999999999876554222 233333343455666 6666543
No 45
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=52.40 E-value=26 Score=28.55 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=24.5
Q ss_pred CCchhHHHHHHHHHhhhccChHHHHHHHH
Q psy5990 53 FPQYKLAALVASKVYFHLGSFSDSLQYAL 81 (119)
Q Consensus 53 F~~R~lAALvaSKVyyhLgey~~aL~yAL 81 (119)
-+.+--|..+-+|||-+.|+|++|..+|-
T Consensus 193 r~tk~aA~allarvyL~~~~~~~A~~~a~ 221 (478)
T 3hdx_A 193 LFNKLSAYSVLAHICAWQGNYAEAETYSA 221 (478)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34566777888999999999999999884
No 46
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=52.39 E-value=26 Score=28.76 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=35.7
Q ss_pred hcchHHHHhhHHHHHHHhh---CCCCCchhHHHHHHHHHhhhccChHHHHHHHHh
Q psy5990 31 DDFWPEVSEAIQKIEILHE---DKGFPQYKLAALVASKVYFHLGSFSDSLQYALG 82 (119)
Q Consensus 31 d~~W~EIsd~i~~IE~LyE---D~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~ 82 (119)
++.|..|-+.|.....+.. +..-+.+--|..+-+|||.+.|+|++|..+|-.
T Consensus 151 ~evy~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~ 205 (481)
T 3jq1_A 151 ADIWAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEP 205 (481)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445555444444443332 334457777888899999999999999999864
No 47
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=50.65 E-value=37 Score=23.60 Aligned_cols=61 Identities=23% Similarity=0.227 Sum_probs=44.7
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhhhhcchH---HH--HhhHHHHHHHhhCCCCCchhHHHHHHHH
Q psy5990 5 AGVISLLDDPMIELKEFSLKKLNDIVDDFWP---EV--SEAIQKIEILHEDKGFPQYKLAALVASK 65 (119)
Q Consensus 5 ag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~---EI--sd~i~~IE~LyED~~F~~R~lAALvaSK 65 (119)
..++.+|..+++.++..|+.-|-.+....-. .+ ...++.+..+..+++..-|+-|+...+.
T Consensus 183 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 183 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999999988743211 11 2357777788888877777777766554
No 48
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=50.13 E-value=14 Score=21.57 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhccChHHHHHHHHhCCCC
Q psy5990 58 LAALVASKVYFHLGSFSDSLQYALGAGDL 86 (119)
Q Consensus 58 lAALvaSKVyyhLgey~~aL~yAL~AG~l 86 (119)
.+-.-...+|+.+|+|++|+++.-.+=.+
T Consensus 39 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 39 VGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44455678999999999999887666443
No 49
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=49.76 E-value=34 Score=23.57 Aligned_cols=43 Identities=16% Similarity=0.050 Sum_probs=27.1
Q ss_pred hHHHHHHHhh-CCCCCchhHHHHHHHHHhhhccChHHHHHHHHh
Q psy5990 40 AIQKIEILHE-DKGFPQYKLAALVASKVYFHLGSFSDSLQYALG 82 (119)
Q Consensus 40 ~i~~IE~LyE-D~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~ 82 (119)
++...+.+.+ ++.-|....|-+-...+||.+|+|++|+...-.
T Consensus 23 A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 66 (225)
T 2yhc_A 23 AITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDR 66 (225)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3444444443 333344455666667899999999999876544
No 50
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=49.68 E-value=59 Score=22.15 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=46.1
Q ss_pred cHHHHHHhcCCCchHHHHHHHHHHhhhhhc---chHHHH--hhHHHHHHHhhCCCCCchhHHHHHHHHHh
Q psy5990 3 TVAGVISLLDDPMIELKEFSLKKLNDIVDD---FWPEVS--EAIQKIEILHEDKGFPQYKLAALVASKVY 67 (119)
Q Consensus 3 Saag~laLL~E~d~~Lk~~AL~~L~~vVd~---~W~EIs--d~i~~IE~LyED~~F~~R~lAALvaSKVy 67 (119)
....++.+|..++++++..|+..|..+... ....+. +.++.+-.+..+++-.-|..|+.....+-
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 72 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 72 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999999888754 344443 46777777777776444666655554443
No 51
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=48.42 E-value=3.6 Score=33.59 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=17.4
Q ss_pred HHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHH
Q psy5990 7 VISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLA 59 (119)
Q Consensus 7 ~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lA 59 (119)
+-.+|..+++++|-.||+.|+.++..+=.-++.+-..||.|..|++=.=+-+|
T Consensus 292 L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 292 LQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp HHHHHHSSSSSSHHHHHHCC---------------------------------
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHH
Confidence 34568899999999999999999887555578899999999998765444444
No 52
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=48.14 E-value=19 Score=26.74 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=33.9
Q ss_pred HHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHHHhCCCCCCCCCCChhH
Q psy5990 46 ILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYV 96 (119)
Q Consensus 46 ~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~AG~lFdv~~~seYv 96 (119)
.+++....|....+-.....+|+.+|++++|+.+.-.|=....-..+..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 250 KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 333433455556666777899999999999999876665555443344443
No 53
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=47.48 E-value=23 Score=21.42 Aligned_cols=25 Identities=16% Similarity=-0.132 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 59 AALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 59 AALvaSKVyyhLgey~~aL~yAL~A 83 (119)
+-.....+|..+|++++|+.+--.+
T Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 55 AWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444557777777777777664443
No 54
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=46.07 E-value=18 Score=22.34 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 57 KLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 57 ~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
.-+-.....+|+.+|++++|+.+...+
T Consensus 61 ~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 61 QALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555678999999999999875544
No 55
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=45.97 E-value=35 Score=23.50 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=26.8
Q ss_pred hhHHHHHHHhh-CCCCCchhHHHHHHHHHhhhccChHHHHHHH
Q psy5990 39 EAIQKIEILHE-DKGFPQYKLAALVASKVYFHLGSFSDSLQYA 80 (119)
Q Consensus 39 d~i~~IE~LyE-D~~F~~R~lAALvaSKVyyhLgey~~aL~yA 80 (119)
+++...+.+.+ ++..|...-|-.....+|+.+|++++|+++-
T Consensus 165 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 165 AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 33444444433 4555555566677778899999998887664
No 56
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=44.74 E-value=21 Score=22.38 Aligned_cols=29 Identities=10% Similarity=0.016 Sum_probs=21.9
Q ss_pred chhHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 55 QYKLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 55 ~R~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
.+.-.-.-.+++||.+|+++.|+.+--.|
T Consensus 44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34444455579999999999999986666
No 57
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=43.89 E-value=24 Score=22.31 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=24.5
Q ss_pred HHHHhhHHHHHHHhhCCCCCchhHHHH
Q psy5990 35 PEVSEAIQKIEILHEDKGFPQYKLAAL 61 (119)
Q Consensus 35 ~EIsd~i~~IE~LyED~~F~~R~lAAL 61 (119)
..|.-+|..+|.|-..-.+|..+|+||
T Consensus 7 RDv~RaiELle~lq~sgevp~~KL~aL 33 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNAKLASL 33 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 367889999999999999999999998
No 58
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=43.64 E-value=55 Score=25.27 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=43.3
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhhhhcchHHH------HhhHHHHHHHhhCCCCCchhHHHHHHH
Q psy5990 5 AGVISLLDDPMIELKEFSLKKLNDIVDDFWPEV------SEAIQKIEILHEDKGFPQYKLAALVAS 64 (119)
Q Consensus 5 ag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EI------sd~i~~IE~LyED~~F~~R~lAALvaS 64 (119)
..++.+|.+++++++..|...|..+... ++. ++.++.++.|.++++-+-|+.|+-...
T Consensus 463 ~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~ 526 (529)
T 1jdh_A 463 PLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526 (529)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred cHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHH
Confidence 5678899999999999999888876633 232 356788899988887666776665443
No 59
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=43.56 E-value=19 Score=23.00 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=17.8
Q ss_pred HHHHHhhhccChHHHHHHHHhC
Q psy5990 62 VASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 62 vaSKVyyhLgey~~aL~yAL~A 83 (119)
-...+|+.+|+|++|+++.-.|
T Consensus 47 nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 47 NKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhhHHHHHHHHHHH
Confidence 3568999999999999876544
No 60
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=43.19 E-value=45 Score=18.92 Aligned_cols=16 Identities=13% Similarity=0.507 Sum_probs=8.1
Q ss_pred HHHhhhccChHHHHHH
Q psy5990 64 SKVYFHLGSFSDSLQY 79 (119)
Q Consensus 64 SKVyyhLgey~~aL~y 79 (119)
..+|+.+|++++|+.+
T Consensus 47 a~~~~~~~~~~~A~~~ 62 (112)
T 2kck_A 47 GKALYNLERYEEAVDC 62 (112)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHccCHHHHHHH
Confidence 3455555555555444
No 61
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=42.93 E-value=23 Score=19.93 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 57 KLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 57 ~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
..+-.....+|+.+|++++|+++.-.+
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344555678999999999999876554
No 62
>3syy_A Exonuclease; digest double stranded DNA, strict 5-3 polarity, hydrolase; 1.90A {Laribacter hongkongensis} PDB: 3sz4_A* 3sz5_A
Probab=42.74 E-value=19 Score=26.80 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.8
Q ss_pred HHHHhhhhhcchHHHHhhHHHH
Q psy5990 23 LKKLNDIVDDFWPEVSEAIQKI 44 (119)
Q Consensus 23 L~~L~~vVd~~W~EIsd~i~~I 44 (119)
+++|...+.+||.++.+.+.+|
T Consensus 177 i~~l~~~~~~Fw~~v~~~~~~l 198 (216)
T 3syy_A 177 IAEIETEVSAFLAELEAEIEYL 198 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999988
No 63
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=42.72 E-value=45 Score=27.48 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=35.1
Q ss_pred hcchHHHHhhHHHHHHHhh------CCCCCchhHHHHHHHHHhhhccChHHHHHHHHh
Q psy5990 31 DDFWPEVSEAIQKIEILHE------DKGFPQYKLAALVASKVYFHLGSFSDSLQYALG 82 (119)
Q Consensus 31 d~~W~EIsd~i~~IE~LyE------D~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~ 82 (119)
++.|..|-+.|.....+.. +..-..+--|..+.+|||-+.|+|++|..+|-.
T Consensus 150 ~ev~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~ 207 (517)
T 3qnk_A 150 KECYDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAE 207 (517)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454444444333322 234467888888999999999999999998753
No 64
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=42.70 E-value=23 Score=26.10 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=50.8
Q ss_pred HHHhcCCCchHHHHHHHHHHhhhhhcchHHHHh-------hHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHH
Q psy5990 7 VISLLDDPMIELKEFSLKKLNDIVDDFWPEVSE-------AIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDS 76 (119)
Q Consensus 7 ~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd-------~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~a 76 (119)
++..|.-+.|.++.-++.-|..++.+|-+.+.+ -++.+-.+.+|.+=.-|+-|..+.-.+|-++|+--++
T Consensus 144 l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~ 220 (278)
T 4ffb_C 144 VIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDL 220 (278)
T ss_dssp HGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhh
Confidence 456678889999999999999999998765432 2334456678888778999999999999999964443
No 65
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=42.66 E-value=20 Score=23.18 Aligned_cols=28 Identities=7% Similarity=-0.122 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 56 YKLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 56 R~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
..-|-.-...+|+.+|+|++|+.+--.|
T Consensus 96 ~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 96 NEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 3446666779999999999999875444
No 66
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=42.61 E-value=73 Score=23.91 Aligned_cols=63 Identities=17% Similarity=0.085 Sum_probs=44.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhhhcchH---HHH--hhHHHHHHHhhCCCCCchhHHHHHHHHH
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIVDDFWP---EVS--EAIQKIEILHEDKGFPQYKLAALVASKV 66 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~---EIs--d~i~~IE~LyED~~F~~R~lAALvaSKV 66 (119)
...++.+|..++++++..|+..|..+....-. .+- ..++.+-.+..+++-.-|.-|+...+.+
T Consensus 236 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l 303 (450)
T 2jdq_A 236 CRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303 (450)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35678899999999999999999988765322 122 4677777888887655566666555544
No 67
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=41.74 E-value=65 Score=23.82 Aligned_cols=31 Identities=13% Similarity=0.062 Sum_probs=24.0
Q ss_pred CCCCchhHHHHHHHHHhhhccChHHHHHHHH
Q psy5990 51 KGFPQYKLAALVASKVYFHLGSFSDSLQYAL 81 (119)
Q Consensus 51 ~~F~~R~lAALvaSKVyyhLgey~~aL~yAL 81 (119)
...|...-+....+.+|+.+|++++|++|--
T Consensus 330 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 360 (378)
T 3q15_A 330 NLHAYIEACARSAAAVFESSCHFEQAAAFYR 360 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3445555666778899999999999998843
No 68
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=41.63 E-value=63 Score=22.33 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=18.7
Q ss_pred HHHHHHhhhccChHHHHHHHHhC
Q psy5990 61 LVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 61 LvaSKVyyhLgey~~aL~yAL~A 83 (119)
+-...+|+.+|+|++|+.+--.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHH
Confidence 56679999999999998875444
No 69
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=41.31 E-value=49 Score=19.00 Aligned_cols=21 Identities=14% Similarity=0.553 Sum_probs=12.2
Q ss_pred HHHHHHhhhccChHHHHHHHH
Q psy5990 61 LVASKVYFHLGSFSDSLQYAL 81 (119)
Q Consensus 61 LvaSKVyyhLgey~~aL~yAL 81 (119)
.....+|+.+|++++|+++.-
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~ 101 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQ 101 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHH
Confidence 344566666666666665543
No 70
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=40.76 E-value=30 Score=20.48 Aligned_cols=27 Identities=15% Similarity=0.006 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 57 KLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 57 ~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
..+-.....+|+.+|++++|+++.-.+
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a 76 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEEC 76 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344455567777888888877665443
No 71
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=40.63 E-value=19 Score=23.23 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 58 LAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 58 lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
.+-.-.+.+|+.+|+|++|+.++-.|
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44455678999999999999886554
No 72
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=39.65 E-value=45 Score=27.49 Aligned_cols=66 Identities=9% Similarity=-0.032 Sum_probs=44.3
Q ss_pred HHHHhcCCCchHHHHHHHHHHhhhhhcchH--HHHhhHHHHHHHhhCC-CCCchhHHHHHHHHHhhhcc
Q psy5990 6 GVISLLDDPMIELKEFSLKKLNDIVDDFWP--EVSEAIQKIEILHEDK-GFPQYKLAALVASKVYFHLG 71 (119)
Q Consensus 6 g~laLL~E~d~~Lk~~AL~~L~~vVd~~W~--EIsd~i~~IE~LyED~-~F~~R~lAALvaSKVyyhLg 71 (119)
.++..|.++++.++..+-+.|-.+....|| +..+-++.+..+..++ +-..|+.|..+...+.-.++
T Consensus 99 ~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~ 167 (861)
T 2bpt_A 99 NALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESAD 167 (861)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC
Confidence 467778888899988887777776654433 1234566676777776 54567777777766665443
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=39.26 E-value=98 Score=21.86 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=46.2
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHh
Q psy5990 5 AGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVY 67 (119)
Q Consensus 5 ag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVy 67 (119)
..++..|.++.+.++..|...|..++...- +..-++.|-...++++-.-|+-+......+.
T Consensus 101 p~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 101 PSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARAL 161 (242)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 468889999999999999999999988653 4566777777777776556776666666553
No 74
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=39.02 E-value=26 Score=21.41 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 57 KLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 57 ~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
.-+-.....+|+.+|++++|+.+--.+
T Consensus 72 ~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 72 VRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 445566678999999999998765443
No 75
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=37.42 E-value=38 Score=26.72 Aligned_cols=98 Identities=7% Similarity=0.101 Sum_probs=63.2
Q ss_pred HHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHH-HhhCCCCCchhHHHHHHHHHh--hhccChHHHHH------
Q psy5990 8 ISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEI-LHEDKGFPQYKLAALVASKVY--FHLGSFSDSLQ------ 78 (119)
Q Consensus 8 laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~-LyED~~F~~R~lAALvaSKVy--yhLgey~~aL~------ 78 (119)
..|.+.+..++|..|..-|-.. +..++.++.|.. +..|++|.-|+.+|....+.. .+....-..+.
T Consensus 77 ~~L~~~~~deVR~~Av~lLg~~-----~~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~ 151 (240)
T 3l9t_A 77 FLAYQSDVYQVRMYAVFLFGYL-----SKDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSS 151 (240)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT-----TTSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCS
T ss_pred HHHHhCcchHHHHHHHHHHHhc-----cCcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 4566777788898888854444 366888888887 888999988888887777665 23333111111
Q ss_pred ------HHHhC------CCCCC-------------CCCCChhHHHhhhhhhhhHHHHHh
Q psy5990 79 ------YALGA------GDLFD-------------VRNDTVYVKTIICKYFCISLSTYR 112 (119)
Q Consensus 79 ------yAL~A------G~lFd-------------v~~~seYvetiisk~~cID~Yi~~ 112 (119)
.|... .+.|. .+.+++||++=|+- .+-.|-+.
T Consensus 152 n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan--~LrD~SK~ 208 (240)
T 3l9t_A 152 NLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGN--ALRDISKK 208 (240)
T ss_dssp SHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHH--HHHHHHTT
T ss_pred CHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHH--HHHHHhhh
Confidence 12111 02232 25678888888888 77777654
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=37.27 E-value=72 Score=19.64 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 57 KLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 57 ~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
..+-.....+|+.+|++++|+++.-.+
T Consensus 110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 110 FNVRFRLGVALDNLGRFDEAIDSFKIA 136 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 344455567788888888887776554
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=37.11 E-value=63 Score=23.81 Aligned_cols=39 Identities=15% Similarity=0.356 Sum_probs=28.1
Q ss_pred HHhhCCCC-CchhHHHHHHHHHhhhccChHHHHHHHHhCC
Q psy5990 46 ILHEDKGF-PQYKLAALVASKVYFHLGSFSDSLQYALGAG 84 (119)
Q Consensus 46 ~LyED~~F-~~R~lAALvaSKVyyhLgey~~aL~yAL~AG 84 (119)
.+.+.... |....+-.....+|+.+|++++|+.+.-.|=
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444 6666677778899999999999988765553
No 78
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=37.05 E-value=71 Score=26.32 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=45.2
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHH------hhHHHHHHHhhCCCCCchhHHHHHHHHHh
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVS------EAIQKIEILHEDKGFPQYKLAALVASKVY 67 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIs------d~i~~IE~LyED~~F~~R~lAALvaSKVy 67 (119)
...++.+|.+++++++..|..-|..+... ++.. ..++.++.|..+++-.-|+.|+....++-
T Consensus 459 i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 459 IPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45688999999999999999988876643 3333 34677888888877666777766555443
No 79
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=36.84 E-value=86 Score=26.47 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=39.1
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhhhhcc--hHHHHhhHHHHHHHhh-CCCCCchhHH
Q psy5990 5 AGVISLLDDPMIELKEFSLKKLNDIVDDF--WPEVSEAIQKIEILHE-DKGFPQYKLA 59 (119)
Q Consensus 5 ag~laLL~E~d~~Lk~~AL~~L~~vVd~~--W~EIsd~i~~IE~LyE-D~~F~~R~lA 59 (119)
..+..+|..+++++|-.||+.|+.++... -.-+..+.+.|..+.. |+.-.=|..|
T Consensus 332 ~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~a 389 (621)
T 2vgl_A 332 NQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRA 389 (621)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHH
Confidence 34567788999999999999999998654 1346778888876555 6553334333
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=36.13 E-value=52 Score=21.94 Aligned_cols=36 Identities=14% Similarity=0.003 Sum_probs=26.5
Q ss_pred CCCCchhHHHHHHHHHhhhccChHHHHHHHHhCCCC
Q psy5990 51 KGFPQYKLAALVASKVYFHLGSFSDSLQYALGAGDL 86 (119)
Q Consensus 51 ~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~AG~l 86 (119)
+.-|..-.+-.....+|+.+|++++|+.+.-.+=..
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334555666667788999999999999987665433
No 81
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=35.91 E-value=77 Score=26.48 Aligned_cols=59 Identities=20% Similarity=0.126 Sum_probs=39.1
Q ss_pred HHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhh-HHHHHHHhhCCCCCchhHHHHHHHHHhh
Q psy5990 7 VISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEA-IQKIEILHEDKGFPQYKLAALVASKVYF 68 (119)
Q Consensus 7 ~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~-i~~IE~LyED~~F~~R~lAALvaSKVyy 68 (119)
+..-|..+++-.+..||+.|-.+.+ +++++. ++.|+.+..|++=.-|.-|++...|+|-
T Consensus 112 l~kDL~~~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~ 171 (618)
T 1w63_A 112 IKNDLNHSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR 171 (618)
T ss_dssp HHHHHSCSSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4445667777777888887777765 344433 6677777777665567777777777764
No 82
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=35.75 E-value=63 Score=18.77 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 58 LAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 58 lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
.+-.....+|+.+|++++|+.+.-.+
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44455678999999999999876554
No 83
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=35.44 E-value=50 Score=28.00 Aligned_cols=65 Identities=12% Similarity=0.178 Sum_probs=48.6
Q ss_pred HHHHhcCCCchHHHHHHHHHHhhhhh----cchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccCh
Q psy5990 6 GVISLLDDPMIELKEFSLKKLNDIVD----DFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSF 73 (119)
Q Consensus 6 g~laLL~E~d~~Lk~~AL~~L~~vVd----~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey 73 (119)
.++..|.++++.+|..+-+-+-.++. ..||++ ++.+-.+..+++...|+.|....+++.-..++.
T Consensus 94 ~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~l---l~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~ 162 (852)
T 4fdd_A 94 ECLNNIGDSSPLIRATVGILITTIASKGELQNWPDL---LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162 (852)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTH---HHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 46677889999999988888877764 467775 666667777777778888888888877665543
No 84
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=35.42 E-value=30 Score=22.12 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 58 LAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 58 lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
.+-.-...+|+.+|++++|+...-.|
T Consensus 48 ~~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 48 ILYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHhhccHHHHHHHHHHH
Confidence 34444568999999999998875544
No 85
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=35.40 E-value=2.1e+02 Score=25.34 Aligned_cols=66 Identities=9% Similarity=0.098 Sum_probs=44.7
Q ss_pred HHHHhcCCCchHHHHHHHHHHhhhhhcchHH----------HHhhHHHHHHHhhC-CCCCchhHHHHHHHHHhhhcc
Q psy5990 6 GVISLLDDPMIELKEFSLKKLNDIVDDFWPE----------VSEAIQKIEILHED-KGFPQYKLAALVASKVYFHLG 71 (119)
Q Consensus 6 g~laLL~E~d~~Lk~~AL~~L~~vVd~~W~E----------Isd~i~~IE~LyED-~~F~~R~lAALvaSKVyyhLg 71 (119)
.++..|.++++.+|.-|.+.|-.++...+++ ..+-++.+....+| +....|.-|....+++.-..|
T Consensus 90 ~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 90 TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH
Confidence 3566677888888888888888877666554 44567777777774 656667777667777664444
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=34.93 E-value=56 Score=21.79 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=26.5
Q ss_pred CCCCchhHHHHHHHHHhhhccChHHHHHHHHhCCCC
Q psy5990 51 KGFPQYKLAALVASKVYFHLGSFSDSLQYALGAGDL 86 (119)
Q Consensus 51 ~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~AG~l 86 (119)
+.-|..-.+-.....+|+.+|++++|+++-..|=+.
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 114 (283)
T 3edt_B 79 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 334555556666789999999999999987665443
No 87
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=34.92 E-value=19 Score=25.89 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=37.6
Q ss_pred CCCchhHHHHHHHHHhhhcc-ChHHHHHHHHhCCCCCCCCCCChhHHHhhhh
Q psy5990 52 GFPQYKLAALVASKVYFHLG-SFSDSLQYALGAGDLFDVRNDTVYVKTIICK 102 (119)
Q Consensus 52 ~F~~R~lAALvaSKVyyhLg-ey~~aL~yAL~AG~lFdv~~~seYvetiisk 102 (119)
..+....+-.....+|+.+| .+++|+++--.|=.+|+...+..+.+.+...
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~~~~~l~~~ 282 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNK 282 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTGGGGGGTTC
T ss_pred cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33444556666788999999 5799999988887788877777777665544
No 88
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=34.77 E-value=47 Score=27.39 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=44.4
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHH
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASK 65 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSK 65 (119)
.+-+-..|+.++++.|..|+++|-.+.-.-+ +++...+.+-.+..++.+..|+++.+-++.
T Consensus 15 ~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~-d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~ 75 (591)
T 2vgl_B 15 IFELKAELNNEKKEKRKEAVKKVIAAMTVGK-DVSSLFPDVVNCMQTDNLELKKLVYLYLMN 75 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHTTC-CCGGGHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3445677888888889999999886554333 566666666678888888888888776654
No 89
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=34.63 E-value=62 Score=23.85 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=24.4
Q ss_pred CCCchhHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 52 GFPQYKLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 52 ~F~~R~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
..|...-+....+.+|+.+|++++|+.|.-.|
T Consensus 334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455556677889999999999999886544
No 90
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=34.40 E-value=35 Score=22.09 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 56 YKLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 56 R~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
..-+-.....+|+.+|+|++|+++--.+
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 106 YADAYYKLGLVYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 3344555678999999999999875443
No 91
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=34.37 E-value=1.1e+02 Score=20.82 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=34.0
Q ss_pred hHHHHhhHHHHHHHhh---CCCCCchhHHHHHHHHHhhhccChHHHHHHHHhCCC
Q psy5990 34 WPEVSEAIQKIEILHE---DKGFPQYKLAALVASKVYFHLGSFSDSLQYALGAGD 85 (119)
Q Consensus 34 W~EIsd~i~~IE~LyE---D~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~AG~ 85 (119)
|.+--..+.+.-.+.+ ++..|....+-.....+|+.+|++++|+++.-.+=.
T Consensus 43 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 43 YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4443344444444433 224566667777788999999999999988766533
No 92
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=33.58 E-value=67 Score=26.75 Aligned_cols=53 Identities=6% Similarity=-0.065 Sum_probs=36.2
Q ss_pred hhcchHHHHhhHHHHHHHhh--------CCCCCchhHHHHHHHHHhhhccChHHHHHHHHh
Q psy5990 30 VDDFWPEVSEAIQKIEILHE--------DKGFPQYKLAALVASKVYFHLGSFSDSLQYALG 82 (119)
Q Consensus 30 Vd~~W~EIsd~i~~IE~LyE--------D~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~ 82 (119)
+++.|..|-+.|.....+.- +..-..+--|..+-+|||-+.|.+++|..+|-.
T Consensus 163 ~~ev~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~ 223 (528)
T 3i4g_A 163 QADILKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHD 223 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555555555554443322 234457778888999999999999999988753
No 93
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=33.54 E-value=52 Score=27.90 Aligned_cols=58 Identities=9% Similarity=0.115 Sum_probs=38.8
Q ss_pred HHHHhcCCCchHHHHHHHHHHhhhhhc----chHHHHhhHHHHHHHhhCCCCCchhHHHHHH
Q psy5990 6 GVISLLDDPMIELKEFSLKKLNDIVDD----FWPEVSEAIQKIEILHEDKGFPQYKLAALVA 63 (119)
Q Consensus 6 g~laLL~E~d~~Lk~~AL~~L~~vVd~----~W~EIsd~i~~IE~LyED~~F~~R~lAALva 63 (119)
.++.+|.++++++|..|++.|..++.. +.+-+.+-++.+-.+..|+...-|.-|.-..
T Consensus 178 ~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L 239 (852)
T 4fdd_A 178 KFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRAL 239 (852)
T ss_dssp HHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456778899999999999999987743 2222334455555566777766676554433
No 94
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=33.49 E-value=20 Score=25.88 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=14.6
Q ss_pred ccChHHHHHHHHhCCC
Q psy5990 70 LGSFSDSLQYALGAGD 85 (119)
Q Consensus 70 Lgey~~aL~yAL~AG~ 85 (119)
=|.|++|...||.+|+
T Consensus 13 ~g~~eeAf~~aL~ssd 28 (139)
T 2vxg_A 13 AGQINKAFHQALLAND 28 (139)
T ss_dssp HTCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhCc
Confidence 4999999999999985
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=33.42 E-value=42 Score=19.37 Aligned_cols=22 Identities=18% Similarity=0.534 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhccChHHHHHHH
Q psy5990 59 AALVASKVYFHLGSFSDSLQYA 80 (119)
Q Consensus 59 AALvaSKVyyhLgey~~aL~yA 80 (119)
+-.....+|+..|++++|+++.
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~ 92 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYY 92 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHH
Confidence 3344566777777777776543
No 96
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=32.80 E-value=84 Score=20.82 Aligned_cols=46 Identities=7% Similarity=0.022 Sum_probs=30.0
Q ss_pred CchhHHHHHHHHHhhhccChHHHHHHHHhCCCCCCCCCCChhHHHhhhh
Q psy5990 54 PQYKLAALVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICK 102 (119)
Q Consensus 54 ~~R~lAALvaSKVyyhLgey~~aL~yAL~AG~lFdv~~~seYvetiisk 102 (119)
|....+-.....+|+.+|+|++|+.+--.+=. .+.+...+...+.+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAAS---LNPNNLDIRNSYEL 164 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHH
Confidence 33445666778999999999999987655422 23334455555555
No 97
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=32.03 E-value=80 Score=26.02 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=39.1
Q ss_pred HHHhcCCCchHHHHHHHHHHhhhhh-cchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhh
Q psy5990 7 VISLLDDPMIELKEFSLKKLNDIVD-DFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYF 68 (119)
Q Consensus 7 ~laLL~E~d~~Lk~~AL~~L~~vVd-~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyy 68 (119)
+...|..+++.++..||+.|-.+.. +.|+.+ ++.+..+..|++-.-|+-|++...|+|-
T Consensus 91 l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l---~~~l~~~L~d~~~~VRk~A~~al~~i~~ 150 (591)
T 2vgl_B 91 FVKDCEDPNPLIRALAVRTMGCIRVDKITEYL---CEPLRKCLKDEDPYVRKTAAVCVAKLHD 150 (591)
T ss_dssp HGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHH---HHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCChHHHHHHH---HHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 4445777888888888887776543 345444 3445566677766677788877777765
No 98
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=31.87 E-value=1e+02 Score=20.34 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhhccChHHHHHHHHhCC
Q psy5990 58 LAALVASKVYFHLGSFSDSLQYALGAG 84 (119)
Q Consensus 58 lAALvaSKVyyhLgey~~aL~yAL~AG 84 (119)
.+-.-...+|+.+|+|++|+.+.-.+=
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344556789999999999998776553
No 99
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=31.86 E-value=63 Score=24.12 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=17.4
Q ss_pred HHHHHhhhccChHHHHHHHHhC
Q psy5990 62 VASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 62 vaSKVyyhLgey~~aL~yAL~A 83 (119)
....||+.+|+|++|+++--.|
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kA 77 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKA 77 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3458999999999999875443
No 100
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=31.81 E-value=40 Score=20.45 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=21.0
Q ss_pred CchhHHHHHHHHHhhhccChHHHHHHHHh
Q psy5990 54 PQYKLAALVASKVYFHLGSFSDSLQYALG 82 (119)
Q Consensus 54 ~~R~lAALvaSKVyyhLgey~~aL~yAL~ 82 (119)
|....+-.....+|+.+|++++|+.+--.
T Consensus 74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 74 GQSVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444566677899999999999876543
No 101
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=31.80 E-value=27 Score=26.69 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=22.5
Q ss_pred HHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHH
Q psy5990 7 VISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAAL 61 (119)
Q Consensus 7 ~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAAL 61 (119)
+..|+..++++++.-+..+| ..+.+..|.+|+...-|+-||.
T Consensus 175 l~~ll~D~d~~VR~aaa~~l-------------~~~~L~~Ll~D~d~~VR~~aa~ 216 (244)
T 1lrv_A 175 LGLMTQDPEPEVRRIVASRL-------------RGDDLLELLHDPDWTVRLAAVE 216 (244)
T ss_dssp GGGSTTCSSHHHHHHHHHHC-------------CGGGGGGGGGCSSHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHhC-------------CHHHHHHHHcCCCHHHHHHHHH
Confidence 34556666666666666553 1244555555555554444443
No 102
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=31.24 E-value=44 Score=21.56 Aligned_cols=31 Identities=10% Similarity=0.094 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHhhhccChHHHHHHHHhCCC
Q psy5990 55 QYKLAALVASKVYFHLGSFSDSLQYALGAGD 85 (119)
Q Consensus 55 ~R~lAALvaSKVyyhLgey~~aL~yAL~AG~ 85 (119)
....+-.....+|+.+|++++|+.+--.+-.
T Consensus 113 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 113 NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3344556667899999999999987665533
No 103
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=31.10 E-value=1e+02 Score=20.77 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=13.1
Q ss_pred HHHHHHhhhccChHHHHHHHHhCCC
Q psy5990 61 LVASKVYFHLGSFSDSLQYALGAGD 85 (119)
Q Consensus 61 LvaSKVyyhLgey~~aL~yAL~AG~ 85 (119)
.....+|+.+|++++|+++--.+=.
T Consensus 112 ~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 112 GQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhh
Confidence 3344555555555555555544433
No 104
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=30.59 E-value=96 Score=19.03 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=22.1
Q ss_pred CchhHHHHHHHHHhhhccChHHHHHHHHhCC
Q psy5990 54 PQYKLAALVASKVYFHLGSFSDSLQYALGAG 84 (119)
Q Consensus 54 ~~R~lAALvaSKVyyhLgey~~aL~yAL~AG 84 (119)
|....+-.....+|+++|++++|+++--.+-
T Consensus 78 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 78 KKYIKGYYRRAASNMALGKFRAALRDYETVV 108 (166)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334455566788999999999988765553
No 105
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=30.54 E-value=75 Score=21.36 Aligned_cols=26 Identities=8% Similarity=-0.072 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 58 LAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 58 lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
-+-.....+|+++|++++|+++.-.+
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~a 103 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSV 103 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34445567788888888887765444
No 106
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=30.50 E-value=1.4e+02 Score=23.52 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=46.1
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhhhcchH---HH--HhhHHHHHHHhhCC-CCCchhHHHHHHHHHh
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIVDDFWP---EV--SEAIQKIEILHEDK-GFPQYKLAALVASKVY 67 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~---EI--sd~i~~IE~LyED~-~F~~R~lAALvaSKVy 67 (119)
...++.+|..+++.++..|+.-|-.++...-. .+ ...++.+-.+..++ +-.-|.-|+...+.+-
T Consensus 288 v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~ 357 (528)
T 4b8j_A 288 CPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNIT 357 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 34678899999999999999999888763322 12 24578788888777 5566777776666554
No 107
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=30.43 E-value=1.8e+02 Score=22.91 Aligned_cols=65 Identities=18% Similarity=0.112 Sum_probs=46.9
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhhhhcc--hH-HH--HhhHHHHHHHhhCCCCCchhHHHHHHHHHhhh
Q psy5990 5 AGVISLLDDPMIELKEFSLKKLNDIVDDF--WP-EV--SEAIQKIEILHEDKGFPQYKLAALVASKVYFH 69 (119)
Q Consensus 5 ag~laLL~E~d~~Lk~~AL~~L~~vVd~~--W~-EI--sd~i~~IE~LyED~~F~~R~lAALvaSKVyyh 69 (119)
..++.+|..+++.++..|+..|-.+.... |. .+ +..++.+-.+..++.+.-|.-|+...+.+--+
T Consensus 344 ~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 344 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 34778999999999999999998877422 21 12 35677777777888777787777766665443
No 108
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=30.35 E-value=1.7e+02 Score=23.20 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=46.6
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhh---hcchHHHH--hhHHHHHHHhh-CCCCCchhHHHHHHHHHhhh
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIV---DDFWPEVS--EAIQKIEILHE-DKGFPQYKLAALVASKVYFH 69 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vV---d~~W~EIs--d~i~~IE~LyE-D~~F~~R~lAALvaSKVyyh 69 (119)
...++.+|..++++++..|...|..+. ++....|. ..|+.+-.|.. +.+-.-++.|+-....+-.+
T Consensus 46 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 46 ICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Confidence 356889999999999999999998876 56777774 45777777776 44444566665544444433
No 109
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=29.90 E-value=1.6e+02 Score=22.65 Aligned_cols=56 Identities=13% Similarity=0.260 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhhh---cchHHH--HhhHHHHHHHhhCCCCCchhHH
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIVD---DFWPEV--SEAIQKIEILHEDKGFPQYKLA 59 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vVd---~~W~EI--sd~i~~IE~LyED~~F~~R~lA 59 (119)
...++.+|..++++++..|+..|-.+.. .....+ ++.++.+-.+..+++-.-|..|
T Consensus 103 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 163 (529)
T 1jdh_A 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 163 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence 3467889999999999999999988753 344444 4678888888877654445554
No 110
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=29.86 E-value=1.7e+02 Score=22.48 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=46.0
Q ss_pred HHHHHhcC-CCchHHHHHHHHHHhhhhhcchHH---H--HhhHHHHHHHhhCCCCCchhHHHHHHHHHhh
Q psy5990 5 AGVISLLD-DPMIELKEFSLKKLNDIVDDFWPE---V--SEAIQKIEILHEDKGFPQYKLAALVASKVYF 68 (119)
Q Consensus 5 ag~laLL~-E~d~~Lk~~AL~~L~~vVd~~W~E---I--sd~i~~IE~LyED~~F~~R~lAALvaSKVyy 68 (119)
..++.||+ +++++++.-|+..|-.++..+=+- + ++.|+.+-.+..+..+.-+.-|+...|.+--
T Consensus 127 ~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~ 196 (296)
T 1xqr_A 127 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 196 (296)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 46788998 468999999999988887544321 2 3577777777778777777777776666543
No 111
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=29.57 E-value=26 Score=25.19 Aligned_cols=40 Identities=13% Similarity=-0.027 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhhhccChHHH-HHHHHhCCCCCCCCCCChh
Q psy5990 56 YKLAALVASKVYFHLGSFSDS-LQYALGAGDLFDVRNDTVY 95 (119)
Q Consensus 56 R~lAALvaSKVyyhLgey~~a-L~yAL~AG~lFdv~~~seY 95 (119)
...+-.-...+|+.+|++++| ..|--.|=.+|+...+..+
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~ 275 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence 344556677899999999999 5544444344544444433
No 112
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=29.55 E-value=53 Score=22.43 Aligned_cols=36 Identities=11% Similarity=0.024 Sum_probs=27.7
Q ss_pred CCCCCchhHHHHHHHHHhhhccChHHHHHHHHhCCC
Q psy5990 50 DKGFPQYKLAALVASKVYFHLGSFSDSLQYALGAGD 85 (119)
Q Consensus 50 D~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~AG~ 85 (119)
.+.-|.+-.+-.....+|+..|++++|+.+.-.+=.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 55 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALE 55 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566666777778999999999999988766644
No 113
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=29.32 E-value=46 Score=27.14 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=26.7
Q ss_pred CCCCCchhHHHHHHHHHhhhcc---------ChHHHHHHHH
Q psy5990 50 DKGFPQYKLAALVASKVYFHLG---------SFSDSLQYAL 81 (119)
Q Consensus 50 D~~F~~R~lAALvaSKVyyhLg---------ey~~aL~yAL 81 (119)
+..-..+--|..+-+|||-+.| +|++|..+|-
T Consensus 181 ~~gr~tk~aA~allarvyL~~~~~~~~~~~~~~~~A~~~a~ 221 (482)
T 3otn_A 181 HTGRVSMGAVKALLADVYLTYAGYPLQGGKSYYAESAKRSL 221 (482)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHH
T ss_pred cCCcCcHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHHH
Confidence 3445678888889999999999 8999998874
No 114
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=28.79 E-value=82 Score=25.39 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=18.7
Q ss_pred HHHHhhhccChHHHHHHHHhCCC
Q psy5990 63 ASKVYFHLGSFSDSLQYALGAGD 85 (119)
Q Consensus 63 aSKVyyhLgey~~aL~yAL~AG~ 85 (119)
+..+|.++|+|++|+.+...+=+
T Consensus 335 L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 335 AMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHH
Confidence 35789999999999999876533
No 115
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=28.66 E-value=84 Score=17.78 Aligned_cols=28 Identities=7% Similarity=-0.111 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhhhccChHHHHHHHHhCC
Q psy5990 57 KLAALVASKVYFHLGSFSDSLQYALGAG 84 (119)
Q Consensus 57 ~lAALvaSKVyyhLgey~~aL~yAL~AG 84 (119)
.-+-.....+|+.+|++++|+++...+-
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344555688999999999988776653
No 116
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron} SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Probab=28.62 E-value=91 Score=25.06 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=34.0
Q ss_pred hhcchHHHHhhHHHHHHHhh-----CCCCCchhHHHHHHHHHhhhc------cChHHHHHHHH
Q psy5990 30 VDDFWPEVSEAIQKIEILHE-----DKGFPQYKLAALVASKVYFHL------GSFSDSLQYAL 81 (119)
Q Consensus 30 Vd~~W~EIsd~i~~IE~LyE-----D~~F~~R~lAALvaSKVyyhL------gey~~aL~yAL 81 (119)
+++.|..|-+.|.....+.- +..-+.+--|..+.+|||-+. ++|++|..+|-
T Consensus 165 ~~evy~~I~~DL~~A~~~Lp~~~~~~~gr~tk~aA~allArvyL~~~~~~~~~~~~~A~~~a~ 227 (527)
T 3ckc_A 165 GTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYAS 227 (527)
T ss_dssp HHHHHHHHHHHHHHHGGGSCCTTCSCTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccCCCCCCCcHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHH
Confidence 34455555544444333221 223457788888999999986 89999999884
No 117
>3l22_A SUSD superfamily protein; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.05A {Bacteroides fragilis}
Probab=28.36 E-value=46 Score=26.79 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=26.5
Q ss_pred CCchhHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 53 FPQYKLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 53 F~~R~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
-+.+--|..+.+|||-+.|+|++|+.+|-..
T Consensus 197 r~tk~aA~allarvyL~~~~~~~A~~~a~~v 227 (441)
T 3l22_A 197 HATQAAANMLKMRVYMAMNEWDKAITAGELV 227 (441)
T ss_dssp SCBHHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3566778888999999999999999999765
No 118
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=28.35 E-value=51 Score=21.75 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=17.8
Q ss_pred hHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 57 KLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 57 ~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
..+-.....+|+.+|++++|+++.-.+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~ 117 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKA 117 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344455567777888888877765544
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=28.16 E-value=1.1e+02 Score=21.81 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=20.3
Q ss_pred HHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 59 AALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 59 AALvaSKVyyhLgey~~aL~yAL~A 83 (119)
+-.-...+|+.+|+|++|+.+.-.|
T Consensus 198 ~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 198 VRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 4455678999999999999987655
No 120
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.01 E-value=1e+02 Score=18.49 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=13.7
Q ss_pred HHHHHHHHhhhccChHHHHHHHHh
Q psy5990 59 AALVASKVYFHLGSFSDSLQYALG 82 (119)
Q Consensus 59 AALvaSKVyyhLgey~~aL~yAL~ 82 (119)
+-.-...+|+++|++++|+++--.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334445666666676666655433
No 121
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=27.34 E-value=50 Score=20.89 Aligned_cols=25 Identities=20% Similarity=0.045 Sum_probs=16.8
Q ss_pred HHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 59 AALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 59 AALvaSKVyyhLgey~~aL~yAL~A 83 (119)
+-.....+|+.+|+|++|+.+.-.|
T Consensus 54 ~~~~lg~~~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 54 YFLGLGACRQSLGLYEQALQSYSYG 78 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344467888888888887664433
No 122
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=27.22 E-value=52 Score=20.78 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=20.9
Q ss_pred CchhHHHHHHHHHhhhccChHHHHHHH
Q psy5990 54 PQYKLAALVASKVYFHLGSFSDSLQYA 80 (119)
Q Consensus 54 ~~R~lAALvaSKVyyhLgey~~aL~yA 80 (119)
|+..-|-.+.-..+|..|+|++|+.+=
T Consensus 40 p~~~rA~~~lg~~~~~~g~y~~Ai~~w 66 (93)
T 3bee_A 40 PYNEAALSLIANDHFISFRFQEAIDTW 66 (93)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344456666789999999999999864
No 123
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=27.20 E-value=80 Score=20.81 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhhhccChHHHHHHHHhCCC
Q psy5990 57 KLAALVASKVYFHLGSFSDSLQYALGAGD 85 (119)
Q Consensus 57 ~lAALvaSKVyyhLgey~~aL~yAL~AG~ 85 (119)
..+-.....+|..+|++++|+++--.+-.
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 45666778899999999999987655533
No 124
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.14 E-value=88 Score=20.37 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhh
Q psy5990 17 ELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHE 49 (119)
Q Consensus 17 ~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyE 49 (119)
..+.-.++.||.+|-.-|.+|..--..+..|.+
T Consensus 24 AfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 24 SFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778999999999999999988888877775
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=26.63 E-value=97 Score=17.81 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=10.6
Q ss_pred HHHHHHhhhccChHHHHHHH
Q psy5990 61 LVASKVYFHLGSFSDSLQYA 80 (119)
Q Consensus 61 LvaSKVyyhLgey~~aL~yA 80 (119)
.....+|+.+|++++|+++.
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~ 103 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYY 103 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 33445555555555555543
No 126
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=26.32 E-value=1.5e+02 Score=23.29 Aligned_cols=31 Identities=10% Similarity=-0.041 Sum_probs=21.5
Q ss_pred CCchhHHHHHHHHHhhhccCh-HHHHHHHHhC
Q psy5990 53 FPQYKLAALVASKVYFHLGSF-SDSLQYALGA 83 (119)
Q Consensus 53 F~~R~lAALvaSKVyyhLgey-~~aL~yAL~A 83 (119)
.|.+.-+-....++|+.+|+| ++|+++.-.|
T Consensus 98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~a 129 (474)
T 4abn_A 98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKA 129 (474)
T ss_dssp CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 345556666677888888888 8887765443
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=26.22 E-value=1.8e+02 Score=20.67 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=17.8
Q ss_pred HHHHHHHhhhccChHHHHHHHHhC
Q psy5990 60 ALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 60 ALvaSKVyyhLgey~~aL~yAL~A 83 (119)
-.-...+|+.+|+|++|+.|--.|
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344567888899999888876555
No 128
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=26.01 E-value=86 Score=21.73 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 56 YKLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 56 R~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
..-+-.....+|+.+|++++|+++--.+
T Consensus 70 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 70 FTAARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3345556667888888888887766555
No 129
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=25.49 E-value=1.7e+02 Score=25.17 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=45.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhhhhc-chHH-HH--hhHHHHHHHhhCCCCCchhHHHHHHHHHhh
Q psy5990 5 AGVISLLDDPMIELKEFSLKKLNDIVDD-FWPE-VS--EAIQKIEILHEDKGFPQYKLAALVASKVYF 68 (119)
Q Consensus 5 ag~laLL~E~d~~Lk~~AL~~L~~vVd~-~W~E-Is--d~i~~IE~LyED~~F~~R~lAALvaSKVyy 68 (119)
..++.||..+++.++..|...|..+... -..+ |. +.++.++.|.++++-.-|+.|+....++-.
T Consensus 596 ~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 596 PLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 4678899999999999999888776532 2222 22 257888999998887777777666555543
No 130
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=25.46 E-value=99 Score=21.40 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 56 YKLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 56 R~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
...+-.....+|+.+|++++|+++--.+
T Consensus 305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 305 NVNALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3345555567777777777777665444
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=25.32 E-value=52 Score=21.49 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=22.0
Q ss_pred CCCCCchhHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 50 DKGFPQYKLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 50 D~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
++..+ -+-.-...+|+.+|++++|+.+--.+
T Consensus 85 ~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 85 DIXEP---RFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp STTCT---HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55544 34445578999999999998876554
No 132
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=24.35 E-value=1.4e+02 Score=20.43 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhccChHHHHHHHHhCCCCCCCCCCChhHHHhhhh
Q psy5990 58 LAALVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICK 102 (119)
Q Consensus 58 lAALvaSKVyyhLgey~~aL~yAL~AG~lFdv~~~seYvetiisk 102 (119)
-+-.....+|+.+|++++|+++.-.+=. .+.++......++.
T Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 312 (330)
T 3hym_B 271 STYSAIGYIHSLMGNFENAVDYFHTALG---LRRDDTFSVTMLGH 312 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTTT---TCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHc---cCCCchHHHHHHHH
Confidence 3444456778888888888877766533 33444445555555
No 133
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=23.82 E-value=78 Score=23.69 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHH--HhhHHHH
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEV--SEAIQKI 44 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EI--sd~i~~I 44 (119)
...++.+|.++++.+|..|...|-.+...+.+++ ...++.+
T Consensus 410 ~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~l 452 (462)
T 1ibr_B 410 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452 (462)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
No 134
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=23.67 E-value=37 Score=30.51 Aligned_cols=27 Identities=7% Similarity=0.240 Sum_probs=20.4
Q ss_pred HHHhhhccChHHHHHHHHhCCCCCCCCC
Q psy5990 64 SKVYFHLGSFSDSLQYALGAGDLFDVRN 91 (119)
Q Consensus 64 SKVyyhLgey~~aL~yAL~AG~lFdv~~ 91 (119)
.|||-+||+|+.|| .+|.+=|+|...+
T Consensus 378 a~vYi~l~d~e~AL-LtLNScPm~t~~d 404 (754)
T 4gns_B 378 ARCHIKKEEYEKAL-FAINSMPRLRKND 404 (754)
T ss_dssp HHHHHHTTCHHHHH-HHHHHSCC-----
T ss_pred HHHHHHhccHHHHH-HHHhcCCCccccc
Confidence 47899999999999 7899999986553
No 135
>3sm4_A Exonuclease; homologous recombination, DNA repair, recombineering, single annealing; 1.88A {Enterobacteria phage lambda} PDB: 3slp_A 1avq_A
Probab=23.59 E-value=41 Score=25.37 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=19.2
Q ss_pred HHHHhhhhhcchHHHHhhHHHH
Q psy5990 23 LKKLNDIVDDFWPEVSEAIQKI 44 (119)
Q Consensus 23 L~~L~~vVd~~W~EIsd~i~~I 44 (119)
.++|...+.+||.++.+.+.+|
T Consensus 199 i~~l~~~~~~Fw~~v~~~~~~~ 220 (229)
T 3sm4_A 199 MASFDEIVPEFIEKMDEALAEI 220 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999876
No 136
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=22.22 E-value=2.2e+02 Score=23.46 Aligned_cols=64 Identities=11% Similarity=-0.003 Sum_probs=0.0
Q ss_pred CcHHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHH
Q psy5990 2 NTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKV 66 (119)
Q Consensus 2 tSaag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKV 66 (119)
.....+|.-+..+|++.|..|.+.|+++-.+..+++-..+-.+=. -++..-.-|++|+.+..+.
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~-~~~~~~~vR~~a~~~Lk~~ 64 (876)
T 1qgr_A 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLA-NPGNSQVARVAAGLQIKNS 64 (876)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHh-CCCCCHHHHHHHHHHHHHh
No 137
>3ihv_A SUSD homolog; NP_813570.1, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.06 E-value=1.2e+02 Score=24.76 Aligned_cols=52 Identities=10% Similarity=0.013 Sum_probs=33.8
Q ss_pred hhcchHHHHhhHHHHHHHhhC------CC----CCchhHHHHHHHHHhhhcc--------ChHHHHHHHH
Q psy5990 30 VDDFWPEVSEAIQKIEILHED------KG----FPQYKLAALVASKVYFHLG--------SFSDSLQYAL 81 (119)
Q Consensus 30 Vd~~W~EIsd~i~~IE~LyED------~~----F~~R~lAALvaSKVyyhLg--------ey~~aL~yAL 81 (119)
+++.|..|-+.|...+.+..+ .. -..+--|..+.+|||-+.| .|++|..+|-
T Consensus 159 ~~ev~~~I~~DL~~A~~~Lp~~~~~~~~g~~~~r~tk~aA~allarvyL~~a~~~~~~~~~~~~A~~~a~ 228 (535)
T 3ihv_A 159 PEKVYEYIEDDLLYACDILPYATDDQYRESNDYRFSKGAALGLLTKVYATWAGYPVKDESKWEAAAKTAR 228 (535)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTTCCSSSCCTTSCCHHHHHHHHHHHHHHHHSTTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccccccccccCccHHHHHHHHHHHHHHccCCcccCHHHHHHHHHHHH
Confidence 345555555555554444321 12 4567778788899999984 6899988875
No 138
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=22.02 E-value=1.2e+02 Score=20.78 Aligned_cols=26 Identities=4% Similarity=-0.221 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 58 LAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 58 lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
-+-.....+|..+|++++|+++.-.+
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~ 115 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAW 115 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444556777777777776654443
No 139
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=21.93 E-value=2.6e+02 Score=22.94 Aligned_cols=66 Identities=9% Similarity=-0.028 Sum_probs=46.3
Q ss_pred HHHHhcCCCch-HHHHHHHHHHhhhh----hcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhcc
Q psy5990 6 GVISLLDDPMI-ELKEFSLKKLNDIV----DDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLG 71 (119)
Q Consensus 6 g~laLL~E~d~-~Lk~~AL~~L~~vV----d~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLg 71 (119)
.++.+|+.+++ .++..++.-+..++ ..|.+-+..-++.+....+++...-|.-|.-+.+.+--.+|
T Consensus 601 ~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 671 (861)
T 2bpt_A 601 LFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLE 671 (861)
T ss_dssp HHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc
Confidence 35566777766 88888877776655 35667777778888877788777777777766665555554
No 140
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=21.75 E-value=38 Score=22.92 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=20.0
Q ss_pred chhHHHHHHHHHhhhccChHHHH
Q psy5990 55 QYKLAALVASKVYFHLGSFSDSL 77 (119)
Q Consensus 55 ~R~lAALvaSKVyyhLgey~~aL 77 (119)
.++.||+-|.|.-|.+|+.||-|
T Consensus 66 AK~sAAf~Ac~~L~~~G~Ldd~L 88 (102)
T 2kou_A 66 AKKDACLKAVHELHNLGVLNDFL 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHCSCTTTS
T ss_pred HHHHHHHHHHHHHHHCCCCcccc
Confidence 46789999999999999998754
No 141
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=21.63 E-value=2.1e+02 Score=21.50 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=42.9
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhhh---hcchHHHHh--hHHHHHHHhh-CCCCCchhHHH
Q psy5990 4 VAGVISLLDDPMIELKEFSLKKLNDIV---DDFWPEVSE--AIQKIEILHE-DKGFPQYKLAA 60 (119)
Q Consensus 4 aag~laLL~E~d~~Lk~~AL~~L~~vV---d~~W~EIsd--~i~~IE~LyE-D~~F~~R~lAA 60 (119)
...++.||..+++++|..|...|-.+. ++....|.+ .|+.+=.|.. ..+..-++.|+
T Consensus 54 Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~ 116 (233)
T 3tt9_A 54 ILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQIT 116 (233)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHH
Confidence 356889999999999999999998875 357777764 6777766665 45566666665
No 142
>2af7_A Gamma-carboxymuconolactone decarboxylase; O26336_metth, NESG, TT747, structural genomics, PSI, protein structure initiative; 2.81A {Methanothermobacterthermautotrophicus} SCOP: a.152.1.2
Probab=21.62 E-value=78 Score=21.14 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=35.3
Q ss_pred hhcchHHHHhhHHH--HHHHhhCCCCC--chhHHHHHHHHHhhhccChHHHHHHHHhCC
Q psy5990 30 VDDFWPEVSEAIQK--IEILHEDKGFP--QYKLAALVASKVYFHLGSFSDSLQYALGAG 84 (119)
Q Consensus 30 Vd~~W~EIsd~i~~--IE~LyED~~F~--~R~lAALvaSKVyyhLgey~~aL~yAL~AG 84 (119)
+.++.|++.+.+.. ....+.+...+ .|+|.++-+|-.-=+-..+.-=++-|+.+|
T Consensus 26 ~~~~~P~~~~~~~~~~~~~~~~~~~L~~k~reLi~la~~~~~gc~~cl~~H~~~a~~~G 84 (125)
T 2af7_A 26 LEDVAPDLARFVAEFAYGDVYSRGVLDLKTRELLTLAALTVLRADDQLKSHVRGALNAG 84 (125)
T ss_dssp HHHHCHHHHHHHHHTCCCCCCTCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhCHHHHHHHHHHhccccccCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34455666666555 35555666676 688888877777544445556667778877
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=21.47 E-value=72 Score=21.54 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 59 AALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 59 AALvaSKVyyhLgey~~aL~yAL~A 83 (119)
+-.-...+|+.+|+|++|+..--.|
T Consensus 72 ~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 72 YIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3334458899999999998765444
No 144
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=21.38 E-value=83 Score=21.06 Aligned_cols=42 Identities=12% Similarity=0.019 Sum_probs=27.3
Q ss_pred hHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990 40 AIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALGA 83 (119)
Q Consensus 40 ~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~A 83 (119)
++...+...+. .|...-+-.....+|+.+|++++|+++--.+
T Consensus 61 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 102 (228)
T 4i17_A 61 AADYFDIAIKK--NYNLANAYIGKSAAYRDMKNNQEYIATLTEG 102 (228)
T ss_dssp HHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CcchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34444444432 3445556666779999999999999875544
No 145
>2fip_A Late genes activator; protein-DNA complex, N-HOOK DNA-binding motif, transcription regulation; 2.00A {Bacillus phage PHI29} PDB: 2fio_A*
Probab=20.43 E-value=5.9 Score=28.42 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=25.9
Q ss_pred HHHHhcCCCc---hHHHHHHHHHHhhhhhcchHHHH
Q psy5990 6 GVISLLDDPM---IELKEFSLKKLNDIVDDFWPEVS 38 (119)
Q Consensus 6 g~laLL~E~d---~~Lk~~AL~~L~~vVd~~W~EIs 38 (119)
|++++|..++ .+.+++||+..+.--.+.|.+|+
T Consensus 77 GF~~~~KGd~~TWqE~~~~~Lr~~~k~~tln~s~i~ 112 (115)
T 2fip_A 77 GFHAWLKGDNATWREVHVYALRIMTKPNTLDWSRIQ 112 (115)
T ss_dssp CCCEEETTEEECHHHHHHHHHHHTTCSCCCCCEEEC
T ss_pred ceeeeeecCcccHHHHHHHHHHhhcCccccCHHHhh
Confidence 5566676655 57889999999988888888775
No 146
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=20.27 E-value=81 Score=20.63 Aligned_cols=32 Identities=9% Similarity=0.089 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHhhhccChHHHHHHHHhCCCC
Q psy5990 55 QYKLAALVASKVYFHLGSFSDSLQYALGAGDL 86 (119)
Q Consensus 55 ~R~lAALvaSKVyyhLgey~~aL~yAL~AG~l 86 (119)
....+-.-...+|+.+|+|++|+++--.+-..
T Consensus 69 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 33445556678999999999999876555443
No 147
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=20.26 E-value=1.7e+02 Score=19.67 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhhhccChHHHHHHHHhCC
Q psy5990 57 KLAALVASKVYFHLGSFSDSLQYALGAG 84 (119)
Q Consensus 57 ~lAALvaSKVyyhLgey~~aL~yAL~AG 84 (119)
..+-.....+|+.+|++++|+++.-.|=
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3344556788899999999988765553
Done!