RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5990
         (119 letters)



>d1avqa_ c.52.1.13 (A:) lambda exonuclease {Bacteriophage lambda
           [TaxId: 10710]}
          Length = 228

 Score = 29.0 bits (64), Expect = 0.12
 Identities = 6/27 (22%), Positives = 15/27 (55%)

Query: 24  KKLNDIVDDFWPEVSEAIQKIEILHED 50
              ++IV +F  ++ EA+ +I  +  +
Sbjct: 199 ASFDEIVPEFIEKMDEALAEIGFVFGE 225


>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 158

 Score = 26.7 bits (58), Expect = 0.69
 Identities = 7/48 (14%), Positives = 14/48 (29%)

Query: 7   VISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFP 54
           +     D + E    S +    +       + +          +KGFP
Sbjct: 107 LAPAFTDEIAEASFVSREDFAQLYAAGQIRMYQTKLFYADALREKGFP 154


>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId:
          6239]}
          Length = 50

 Score = 24.7 bits (54), Expect = 0.81
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 36 EVSEAIQKIEILHEDKGFPQYKLAAL 61
          +V   ++ +E + +       KLA+L
Sbjct: 5  DVQRILELMEHVQKTGEVNNAKLASL 30


>d1f7la_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS
           {Bacillus subtilis [TaxId: 1423]}
          Length = 118

 Score = 24.9 bits (54), Expect = 1.8
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 41  IQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYAL 81
            Q IEI  +  G P      L  + V  H+ S + + +YA 
Sbjct: 74  FQDIEIRKDQNGKPYIICTKLSPAAV--HV-SITHTKEYAA 111


>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus
           casei [TaxId: 1582]}
          Length = 172

 Score = 25.2 bits (54), Expect = 2.0
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 16  IELKEFSLKKLNDIVDDFWPEVSEAIQKIEI 46
           I L +   + +          +++A  K +I
Sbjct: 142 IPLTDHEEESMQKSASQLKKVLTDAFAKNDI 172


>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus
           pentosus [TaxId: 1589]}
          Length = 171

 Score = 24.8 bits (53), Expect = 2.5
 Identities = 6/30 (20%), Positives = 13/30 (43%)

Query: 16  IELKEFSLKKLNDIVDDFWPEVSEAIQKIE 45
             L    LKK+ D        +++ + ++E
Sbjct: 141 SPLSADELKKMQDSAATLKKVLNDGLAELE 170


>d1umha_ b.18.1.21 (A:) F-box only protein 2 {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 184

 Score = 24.8 bits (54), Expect = 2.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 8   ISLLDDPMIELKEFSLKKLNDIVDDFWPEVS 38
           + LL +    L EF+  ++    D  W E+S
Sbjct: 112 VRLLSENEDVLAEFATGQVAVPEDGSWMEIS 142


>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 57

 Score = 23.6 bits (51), Expect = 3.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 36 EVSEAIQKIEILHEDKGFPQYKLAAL 61
          +VS A++ +E L      P  KL AL
Sbjct: 6  DVSRAVELLERLQRSGELPPQKLQAL 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.409 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 449,352
Number of extensions: 19202
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 9
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)