Query         psy5991
Match_columns 223
No_of_seqs    87 out of 106
Neff          3.8 
Searched_HMMs 29240
Date          Fri Aug 16 23:47:50 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy5991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5991hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3zrh_A Ubiquitin thioesterase  100.0 6.2E-71 2.1E-75  516.0  17.4  179   21-223   132-316 (454)
  2 3dkb_A Tumor necrosis factor,  100.0 2.9E-68 9.9E-73  491.4  14.3  174   22-223    63-250 (390)
  3 3pfy_A OTU domain-containing p  98.8 4.5E-09 1.5E-13   88.8   7.2   90   97-206    58-147 (185)
  4 3by4_A OTU1, ubiquitin thioest  98.7 1.3E-08 4.6E-13   86.9   7.1   91   97-207    19-109 (212)
  5 3phx_A RNA-directed RNA polyme  98.6 3.2E-08 1.1E-12   83.2   6.3   86   98-205    31-122 (185)
  6 3phu_A RNA-directed RNA polyme  98.6   6E-08   2E-12   84.0   5.8   86   98-205    31-122 (219)
  7 1tff_A Ubiquitin thiolesterase  96.2   0.018 6.2E-07   49.6   8.6   26  180-205   170-195 (234)
  8 2zfy_A Ubiquitin thioesterase   93.4    0.23 7.8E-06   42.6   7.5   26  180-205   173-198 (234)
  9 4dhi_B Ubiquitin thioesterase   89.4     1.7 5.9E-05   38.9   9.0   25  180-204   208-232 (284)
 10 4ddg_A Ubiquitin-conjugating e  89.1     1.8   6E-05   39.7   9.1   25  180-204   338-362 (399)
 11 3rea_A Protein NEF; HIV-1 NEF,  63.0     2.7 9.2E-05   35.3   1.5   54   58-117    53-131 (166)
 12 3fz4_A Putative arsenate reduc  61.5       4 0.00014   31.1   2.1   22  195-216    93-115 (120)
 13 3gkx_A Putative ARSC family re  60.9     3.9 0.00013   31.2   2.0   23  195-217    94-116 (120)
 14 3rdw_A Putative arsenate reduc  60.6     3.5 0.00012   31.5   1.7   22  195-216    94-115 (121)
 15 3l78_A Regulatory protein SPX;  60.2       4 0.00014   30.9   1.9   22  195-216    88-109 (120)
 16 3f0i_A Arsenate reductase; str  59.6     3.8 0.00013   31.2   1.7   22  195-216    93-114 (119)
 17 1z3e_A Regulatory protein SPX;  56.7     4.9 0.00017   30.7   1.9   23  195-217    89-111 (132)
 18 4en2_B Protein NEF; human immu  56.2     3.4 0.00012   35.7   1.0   54   58-117    93-171 (206)
 19 2kok_A Arsenate reductase; bru  55.4     4.9 0.00017   30.2   1.7   20  196-215    93-112 (120)
 20 1rw1_A Conserved hypothetical   53.2     5.3 0.00018   29.7   1.5   20  195-214    87-106 (114)
 21 3ik5_A Protein NEF; protein-pr  51.1       4 0.00014   33.6   0.6   54   58-117    33-109 (143)
 22 1s3c_A Arsenate reductase; ARS  43.9     9.3 0.00032   29.9   1.7   18  195-212    90-107 (141)
 23 3b21_A ORF169B, OSPI; bacteria  27.3      32  0.0011   29.0   2.4   16  104-120    65-83  (220)
 24 1w4r_A Thymidine kinase; type   20.9      78  0.0027   26.3   3.6   23  196-220   115-137 (195)
 25 1gx1_A 2-C-methyl-D-erythritol  20.3      38  0.0013   28.1   1.5   21  101-121    32-52  (160)
 26 2pmp_A 2-C-methyl-D-erythritol  20.2      39  0.0013   28.0   1.5   20  101-120    34-53  (160)
 27 1t0a_A 2C-methyl-D-erythritol   20.1      39  0.0013   28.0   1.5   21  101-121    33-53  (159)

No 1  
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=100.00  E-value=6.2e-71  Score=516.03  Aligned_cols=179  Identities=63%  Similarity=1.152  Sum_probs=166.8

Q ss_pred             eccceEEEeccccccCCHHHHHHHHHhhcCHHHHHHHhcCCCCCCcchhhhhhHHHHhhhhcCCCCccccccccc----c
Q psy5991          21 LTSKYFVCFFSEIENLPPSIQEQLFDELLDKEAQQQLEAEPHPVINWSHELLDKEAQQQLEAEPHPVINWSHEVT----A   96 (223)
Q Consensus        21 ~~~~~t~~lP~~i~~~p~~~re~l~~~LlD~~~q~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LNW~~~~~----~   96 (223)
                      .|+.+||+||++|++||++||++|+++|||+++|++||+++                        ++||||++++    .
T Consensus       132 ~~~~~tF~LP~~I~~~p~~fqe~l~~~LiDr~~q~~LE~~~------------------------~~LNW~~e~~~~~~~  187 (454)
T 3zrh_A          132 LTDLVTFTLPADIEDLPPTVQEKLFDEVLDRDVQKELEEES------------------------PIINWSLELATRLDS  187 (454)
T ss_dssp             ESCCCCCCBCGGGGGSCHHHHHHHHHHHBCHHHHHHHHTTS------------------------SSSSCCHHHHTTTCC
T ss_pred             ecCCeeEECcHHhhhCCHHHHHHHHHHHhhHHHHHHHhhcc------------------------ccccchhhhcccccc
Confidence            48899999999999999999999999999999999999986                        4899999883    5


Q ss_pred             eeeeeeeCCCCcchhHHhhhhhhccccCchHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcc--cccccChhHHHHHHHHH
Q psy5991          97 HLYALWNRSAGDCLLDSLMQATWGVFDRENVLRRALADSLAQASHLFYPRWKEYEDMHASL--LHFSLDESQWEEDWASL  174 (223)
Q Consensus        97 rL~pL~t~GDGNCLlHA~S~~mWGv~Drdl~LRkaL~~~L~~~~~~f~rRW~~~e~~~s~~--~~~~~~e~eW~~EW~~i  174 (223)
                      |||||+|+||||||+||||||||||||++++|||+|+++|+++++.||+||+++|+.+++.  ++|+|+++||++||++|
T Consensus       188 rL~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~i  267 (454)
T 3zrh_A          188 RLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFI  267 (454)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred             ceeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999889999999999999886  78888999999999999


Q ss_pred             HHhhCCCcchhhHHHHHHHhhhhcCceEEeccccccccCCCcccccCCC
Q psy5991         175 VSLASQPGAALEQLHVFALAHILRRPIIVYGVKYVKSFRGEDIGYARFE  223 (223)
Q Consensus       175 v~~As~pg~sLEeiHIFvLAnILRRPIIVy~~~~lr~~rGe~l~~~rf~  223 (223)
                      |++||+||+|||||||||||||||||||||+++|+|||+||+|||++|+
T Consensus       268 v~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~  316 (454)
T 3zrh_A          268 LSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQ  316 (454)
T ss_dssp             HHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCC
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccc
Confidence            9999999999999999999999999999999999999999999999995


No 2  
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=100.00  E-value=2.9e-68  Score=491.40  Aligned_cols=174  Identities=32%  Similarity=0.630  Sum_probs=156.3

Q ss_pred             ccceEEEeccccccCCHHHHHHHHHhhcCHHHHHHHhcCCCCCCcchhhhhhHHHHhhhhcCCCCcccccccccceeeee
Q psy5991          22 TSKYFVCFFSEIENLPPSIQEQLFDELLDKEAQQQLEAEPHPVINWSHELLDKEAQQQLEAEPHPVINWSHEVTAHLYAL  101 (223)
Q Consensus        22 ~~~~t~~lP~~i~~~p~~~re~l~~~LlD~~~q~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LNW~~~~~~rL~pL  101 (223)
                      ++.|||+|| +|+.||++||++|+++|||+++|++||+++                         +||||+++ .||+||
T Consensus        63 m~~ytl~lp-~i~~fp~~fre~L~~~LiD~~~q~tLE~~~-------------------------~LNW~~e~-~rL~pL  115 (390)
T 3dkb_A           63 MHRYTLEMF-RTCQFCPQFREIIHKALIDRNIQATLESQK-------------------------KLNWCREV-RKLVAL  115 (390)
T ss_dssp             GGGCCCCBC-CCTTSCHHHHHHHHHHHBCHHHHHHHHHTT-------------------------SSSCCSSB-CCEEEB
T ss_pred             ccceeEecc-ccccCCHHHHHHHHHHHhhHHHHHHHhhcc-------------------------cccccccc-cceEEE
Confidence            799999999 999999999999999999999999999998                         89999997 599999


Q ss_pred             eeCCCCcchhHHhhhhhhccccCchHHHHHHHHHHHhhh-hhHHHHHHHHHHHhhc---ccccccChhHHHHHHHHHHHh
Q psy5991         102 WNRSAGDCLLDSLMQATWGVFDRENVLRRALADSLAQAS-HLFYPRWKEYEDMHAS---LLHFSLDESQWEEDWASLVSL  177 (223)
Q Consensus       102 ~t~GDGNCLlHA~S~~mWGv~Drdl~LRkaL~~~L~~~~-~~f~rRW~~~e~~~s~---~~~~~~~e~eW~~EW~~iv~~  177 (223)
                      +|+||||||+|||||||||||||+++|||+|+++|+++. +.||+||+ .+..+++   .+++.|+++||++||++||++
T Consensus       116 ~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~-~e~~~~q~~~~~gL~y~e~ew~~EW~~Iv~~  194 (390)
T 3dkb_A          116 KTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQ-LESLKSQEFVETGLCYDTRNWNDEWDNLIKM  194 (390)
T ss_dssp             CCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHH-HHHHCCCSSCC----CCSSCSSHHHHHHHHH
T ss_pred             EecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHH-HHHHHhhhhHhhcccccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999886 68999999 4555554   378999999999999999999


Q ss_pred             hCCC---------cchhhHHHHHHHhhhhcCceEEeccccccccC-CCcccccCCC
Q psy5991         178 ASQP---------GAALEQLHVFALAHILRRPIIVYGVKYVKSFR-GEDIGYARFE  223 (223)
Q Consensus       178 As~p---------g~sLEeiHIFvLAnILRRPIIVy~~~~lr~~r-Ge~l~~~rf~  223 (223)
                      |||+         |+|||||||||||||||||||||+|+|+||++ ||++||++|+
T Consensus       195 Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~  250 (390)
T 3dkb_A          195 ASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVG  250 (390)
T ss_dssp             TSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCC
T ss_pred             hCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccC
Confidence            9984         57999999999999999999999999999996 9999999995


No 3  
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=98.85  E-value=4.5e-09  Score=88.79  Aligned_cols=90  Identities=20%  Similarity=0.402  Sum_probs=60.9

Q ss_pred             eeeeeeeCCCCcchhHHhhhhhhccccCchHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccccccChhHHHHHHHHHHH
Q psy5991          97 HLYALWNRSAGDCLLDSLMQATWGVFDRENVLRRALADSLAQASHLFYPRWKEYEDMHASLLHFSLDESQWEEDWASLVS  176 (223)
Q Consensus        97 rL~pL~t~GDGNCLlHA~S~~mWGv~Drdl~LRkaL~~~L~~~~~~f~rRW~~~e~~~s~~~~~~~~e~eW~~EW~~iv~  176 (223)
                      .|+.-.+.||||||++|+|.+++|-++....||+...+.|++....|           .+.+     +    .+|+.-++
T Consensus        58 gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f-----------~~Fv-----~----~~~e~Y~~  117 (185)
T 3pfy_A           58 GFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYF-----------SNYV-----T----EDFTTYIN  117 (185)
T ss_dssp             CCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHH-----------TTCC------------------
T ss_pred             CcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH-----------HHHH-----h----ccHHHHHH
Confidence            58888899999999999999999999999999999999999654332           1111     1    12333344


Q ss_pred             hhCCCcchhhHHHHHHHhhhhcCceEEecc
Q psy5991         177 LASQPGAALEQLHVFALAHILRRPIIVYGV  206 (223)
Q Consensus       177 ~As~pg~sLEeiHIFvLAnILRRPIIVy~~  206 (223)
                      .-..++.---++.|.+||+++++||+||..
T Consensus       118 ~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~  147 (185)
T 3pfy_A          118 RKRKNNCHGNHIEMQAMAEMYNRPVEVYQY  147 (185)
T ss_dssp             --------CCHHHHHHHHHHHTSCEEEESS
T ss_pred             HhhCCCccchHHHHHHHHHhhCCcEEEEEC
Confidence            334454433467899999999999999974


No 4  
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=98.75  E-value=1.3e-08  Score=86.89  Aligned_cols=91  Identities=12%  Similarity=0.065  Sum_probs=68.2

Q ss_pred             eeeeeeeCCCCcchhHHhhhhhhccccCchHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccccccChhHHHHHHHHHHH
Q psy5991          97 HLYALWNRSAGDCLLDSLMQATWGVFDRENVLRRALADSLAQASHLFYPRWKEYEDMHASLLHFSLDESQWEEDWASLVS  176 (223)
Q Consensus        97 rL~pL~t~GDGNCLlHA~S~~mWGv~Drdl~LRkaL~~~L~~~~~~f~rRW~~~e~~~s~~~~~~~~e~eW~~EW~~iv~  176 (223)
                      .|+.-...||||||++|+|.++ |-.+.-..||+...+.|++....|..-.          .     +    ..|+.-++
T Consensus        19 ~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~----------~-----~----~~~e~Y~~   78 (212)
T 3by4_A           19 VLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAI----------L-----D----KPNKDYAQ   78 (212)
T ss_dssp             EEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHH----------H-----T----SCHHHHHH
T ss_pred             CeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhh----------c-----C----CCHHHHHH
Confidence            5777889999999999999999 9999999999999999997654332110          0     1    22333344


Q ss_pred             hhCCCcchhhHHHHHHHhhhhcCceEEeccc
Q psy5991         177 LASQPGAALEQLHVFALAHILRRPIIVYGVK  207 (223)
Q Consensus       177 ~As~pg~sLEeiHIFvLAnILRRPIIVy~~~  207 (223)
                      .-+.|+.=--+++|.|||+++++||+||...
T Consensus        79 ~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~  109 (212)
T 3by4_A           79 WILKMESWGGAIEIGIISDALAVAIYVVDID  109 (212)
T ss_dssp             HTTSTTSCCCHHHHHHHHHHHTCEEEEEETT
T ss_pred             HhcCCCEEccHHHHHHHHHHHCCCEEEEECC
Confidence            4455554445688999999999999999743


No 5  
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=98.65  E-value=3.2e-08  Score=83.22  Aligned_cols=86  Identities=14%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             eeeeeeCCCCcchhHHhhhhhhcc-ccC-----chHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccccccChhHHHHHH
Q psy5991          98 LYALWNRSAGDCLLDSLMQATWGV-FDR-----ENVLRRALADSLAQASHLFYPRWKEYEDMHASLLHFSLDESQWEEDW  171 (223)
Q Consensus        98 L~pL~t~GDGNCLlHA~S~~mWGv-~Dr-----dl~LRkaL~~~L~~~~~~f~rRW~~~e~~~s~~~~~~~~e~eW~~EW  171 (223)
                      ...++..||||||++|+|.++.|- ++.     -..||+...+.|++....+.               .   ++.|++. 
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~~~---------------~---~~~~~~Y-   91 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARL---------------V---GLSLEDY-   91 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTHHH---------------H---CCCHHHH-
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHhhh---------------c---CCCHHHH-
Confidence            444667999999999999999996 666     67899999988886543310               1   2223333 


Q ss_pred             HHHHHhhCCCcchhhHHHHHHHhhhhcCceEEec
Q psy5991         172 ASLVSLASQPGAALEQLHVFALAHILRRPIIVYG  205 (223)
Q Consensus       172 ~~iv~~As~pg~sLEeiHIFvLAnILRRPIIVy~  205 (223)
                         ++.-..++.--.++.|.|||+++++||+||.
T Consensus        92 ---~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~  122 (185)
T 3phx_A           92 ---LKRMLSDNEWGSTLEASMLAKEMGITIIIWT  122 (185)
T ss_dssp             ---HHHHTSTTCCCBHHHHHHHHHHHCCCEEEEE
T ss_pred             ---HHHhhCCCccCcHHHHHHHHHHHCCcEEEEE
Confidence               3333445443446779999999999999996


No 6  
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=98.56  E-value=6e-08  Score=83.97  Aligned_cols=86  Identities=14%  Similarity=0.145  Sum_probs=60.0

Q ss_pred             eeeeeeCCCCcchhHHhhhhhhcc-ccC-----chHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccccccChhHHHHHH
Q psy5991          98 LYALWNRSAGDCLLDSLMQATWGV-FDR-----ENVLRRALADSLAQASHLFYPRWKEYEDMHASLLHFSLDESQWEEDW  171 (223)
Q Consensus        98 L~pL~t~GDGNCLlHA~S~~mWGv-~Dr-----dl~LRkaL~~~L~~~~~~f~rRW~~~e~~~s~~~~~~~~e~eW~~EW  171 (223)
                      +..++..||||||++|+|.++.|- .+.     -..||+...+.|+.....+.               +   ++.|++.-
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~~~---------------~---~~~feeY~   92 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARL---------------V---GLSLEDYL   92 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHHHH---------------H---CCCHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhhhh---------------c---CCCHHHHH
Confidence            444667999999999999999996 565     57899999988886543310               1   22233333


Q ss_pred             HHHHHhhCCCcchhhHHHHHHHhhhhcCceEEec
Q psy5991         172 ASLVSLASQPGAALEQLHVFALAHILRRPIIVYG  205 (223)
Q Consensus       172 ~~iv~~As~pg~sLEeiHIFvLAnILRRPIIVy~  205 (223)
                      +.|    ..++.--.++.|.+||+++++||+||.
T Consensus        93 ~~m----~~~g~WGG~iEL~AlS~~~~v~I~V~~  122 (219)
T 3phu_A           93 KRM----LSDNEWGSTLEASMLAKEMGITIIIWT  122 (219)
T ss_dssp             HHH----HSTTCCCCHHHHHHHHHHTTCCEEEEE
T ss_pred             HHh----cCCCccCCHHHHHHHHHHhCCCEEEEE
Confidence            333    334433345779999999999999994


No 7  
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=96.21  E-value=0.018  Score=49.63  Aligned_cols=26  Identities=15%  Similarity=0.169  Sum_probs=20.9

Q ss_pred             CCcchhhHHHHHHHhhhhcCceEEec
Q psy5991         180 QPGAALEQLHVFALAHILRRPIIVYG  205 (223)
Q Consensus       180 ~pg~sLEeiHIFvLAnILRRPIIVy~  205 (223)
                      +.+.--.+++|-|||+.|+.||.|+-
T Consensus       170 ~~~~~~~~iei~ALa~aL~v~I~V~~  195 (234)
T 1tff_A          170 PMATECDHIQITALSQALSIALQVEY  195 (234)
T ss_dssp             STTCCCCHHHHHHHHHHHTCCEEEEE
T ss_pred             hhhcccccHHHHHHHHHhCCCEEEEE
Confidence            33433368999999999999999985


No 8  
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=93.39  E-value=0.23  Score=42.59  Aligned_cols=26  Identities=27%  Similarity=0.257  Sum_probs=20.9

Q ss_pred             CCcchhhHHHHHHHhhhhcCceEEec
Q psy5991         180 QPGAALEQLHVFALAHILRRPIIVYG  205 (223)
Q Consensus       180 ~pg~sLEeiHIFvLAnILRRPIIVy~  205 (223)
                      +++.--.+++|-|||+.|+.||.|+-
T Consensus       173 ~~~~~~~~i~i~ALa~al~v~I~V~~  198 (234)
T 2zfy_A          173 PMCKESDHIHIIALAQALSVSIQVEY  198 (234)
T ss_dssp             STTCCCCHHHHHHHHHHHTCCEEEEE
T ss_pred             hHhhcCCHHHHHHHHHHhCCCEEEEE
Confidence            33433368999999999999999975


No 9  
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=89.36  E-value=1.7  Score=38.91  Aligned_cols=25  Identities=8%  Similarity=0.009  Sum_probs=20.2

Q ss_pred             CCcchhhHHHHHHHhhhhcCceEEe
Q psy5991         180 QPGAALEQLHVFALAHILRRPIIVY  204 (223)
Q Consensus       180 ~pg~sLEeiHIFvLAnILRRPIIVy  204 (223)
                      |.+.--.++||-|||+.|.-||-|+
T Consensus       208 ~~~~e~d~leI~ALa~aL~v~I~V~  232 (284)
T 4dhi_B          208 PMWKDADHLAINSLIKAAGTRVRIE  232 (284)
T ss_dssp             STTCCCCHHHHHHHHHHTTCCEEEE
T ss_pred             ehhhcccHHHHHHHHHHhCCcEEEE
Confidence            3444447899999999999999774


No 10 
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=89.11  E-value=1.8  Score=39.65  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=20.4

Q ss_pred             CCcchhhHHHHHHHhhhhcCceEEe
Q psy5991         180 QPGAALEQLHVFALAHILRRPIIVY  204 (223)
Q Consensus       180 ~pg~sLEeiHIFvLAnILRRPIIVy  204 (223)
                      +.+.--.++||-+||+.|+-||.|+
T Consensus       338 ~~~~e~d~l~I~ALa~al~v~I~V~  362 (399)
T 4ddg_A          338 PMCKESDHIHIIALAQALSVSIQVE  362 (399)
T ss_dssp             STTCCBCHHHHHHHHHHHTCCCEEE
T ss_pred             eHHhhCcHHHHHHHHHHcCCcEEEE
Confidence            3344446899999999999999996


No 11 
>3rea_A Protein NEF; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 2.00A {Hiv-1 M} SCOP: d.102.1.1 PDB: 3rbb_A 3reb_A 1efn_B 1avv_A 1avz_A 2nef_A
Probab=63.03  E-value=2.7  Score=35.32  Aligned_cols=54  Identities=20%  Similarity=0.263  Sum_probs=22.2

Q ss_pred             hcCCCCCCcchh---hhhhHHHHhhhhcCC---------------CCcccccccccceeeeee-------eCCCCcchhH
Q psy5991          58 EAEPHPVINWSH---ELLDKEAQQQLEAEP---------------HPVINWSHEVTAHLYALW-------NRSAGDCLLD  112 (223)
Q Consensus        58 E~~~~~~~~~~~---~~~~~~~~~~~~~~~---------------~~~LNW~~~~~~rL~pL~-------t~GDGNCLlH  112 (223)
                      |..|--||-||.   +++|--+.+  +.|+               |-..-||    =+|+|+.       +.|+-|||||
T Consensus        53 EKGGLeGl~yS~kRq~ILDlwvy~--tqG~fPDWqnYTpGPG~RyPltFGWc----fKLVPVd~~~veea~~gE~n~LLH  126 (166)
T 3rea_A           53 EKGGLEGLIWSQRRQEILDLWIYH--TQGYFPDWQNYTPGPGIRYPLTFGWC----FKLVPVEPEKVEEANEGENNSLLH  126 (166)
T ss_dssp             HHCSSTTCBCCHHHHHHHHHHHHH--HHCBCSCCCCBCCSSSCBCBSSTTCC----EEEEEECCC---------------
T ss_pred             hccCccceeeccchhhhceeeEEe--eeeecCCccccCCCCCccccccccee----eEeeeCCccccccCCcccccccCC
Confidence            344566788885   777765443  3332               2222333    2899986       5689999999


Q ss_pred             Hhhhh
Q psy5991         113 SLMQA  117 (223)
Q Consensus       113 A~S~~  117 (223)
                      -++|.
T Consensus       127 P~~~h  131 (166)
T 3rea_A          127 PMSLH  131 (166)
T ss_dssp             -----
T ss_pred             hHHhC
Confidence            99995


No 12 
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=61.51  E-value=4  Score=31.07  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=17.2

Q ss_pred             hhhcCceEEeccc-cccccCCCc
Q psy5991         195 HILRRPIIVYGVK-YVKSFRGED  216 (223)
Q Consensus       195 nILRRPIIVy~~~-~lr~~rGe~  216 (223)
                      .++||||||.+++ ++=.|+=+.
T Consensus        93 ~LikRPIv~~~~~~~~vGf~~~~  115 (120)
T 3fz4_A           93 MLIKRPLLVKEGKIVQIGYRTAY  115 (120)
T ss_dssp             GGBCSCEEEETTEEEEESSSSCG
T ss_pred             heEeccEEEECCEEEEEcCCHHH
Confidence            4799999999988 776666443


No 13 
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=60.94  E-value=3.9  Score=31.16  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=17.9

Q ss_pred             hhhcCceEEeccccccccCCCcc
Q psy5991         195 HILRRPIIVYGVKYVKSFRGEDI  217 (223)
Q Consensus       195 nILRRPIIVy~~~~lr~~rGe~l  217 (223)
                      .++||||||.+++++=.|+-+.+
T Consensus        94 ~LikRPiv~~~~~~~vGf~~~~~  116 (120)
T 3gkx_A           94 KLVKRPLVVTERFVLVGFKPEEW  116 (120)
T ss_dssp             GGBCSCEEECSSCEEESCCTTGG
T ss_pred             hheECcEEEECCEEEEcCCHHHH
Confidence            47999999999887777765543


No 14 
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=60.64  E-value=3.5  Score=31.47  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=16.8

Q ss_pred             hhhcCceEEeccccccccCCCc
Q psy5991         195 HILRRPIIVYGVKYVKSFRGED  216 (223)
Q Consensus       195 nILRRPIIVy~~~~lr~~rGe~  216 (223)
                      .++||||||.+++++=.|.-|.
T Consensus        94 ~LikRPIv~~~~~~~vG~~~e~  115 (121)
T 3rdw_A           94 KLIERPIVVTQGKARIGRPPEQ  115 (121)
T ss_dssp             GGBCCCEEEETTEEEECSSGGG
T ss_pred             cceeCCEEEECCEEEEECCHHH
Confidence            4799999999988776665443


No 15 
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=60.19  E-value=4  Score=30.90  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=17.5

Q ss_pred             hhhcCceEEeccccccccCCCc
Q psy5991         195 HILRRPIIVYGVKYVKSFRGED  216 (223)
Q Consensus       195 nILRRPIIVy~~~~lr~~rGe~  216 (223)
                      .+++|||||.+++++-.|.-|.
T Consensus        88 ~LikRPiv~~~~~~~vG~~~e~  109 (120)
T 3l78_A           88 SLLRRPIIMDNKRMQIGFNEDE  109 (120)
T ss_dssp             GGBCSCEEECSSCEEESCCTTG
T ss_pred             cceeccEEEECCEEEecCCHHH
Confidence            4799999999888777766554


No 16 
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=59.56  E-value=3.8  Score=31.19  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=16.6

Q ss_pred             hhhcCceEEeccccccccCCCc
Q psy5991         195 HILRRPIIVYGVKYVKSFRGED  216 (223)
Q Consensus       195 nILRRPIIVy~~~~lr~~rGe~  216 (223)
                      .++||||||.+++++-.|.=|.
T Consensus        93 ~LikRPIv~~~~~~~vG~~~e~  114 (119)
T 3f0i_A           93 KLIERPIVVCNGQARHGRPPEQ  114 (119)
T ss_dssp             GGBCSCEEEETTEEEECSSGGG
T ss_pred             hheeCCEEEECCEEEEeCCHHH
Confidence            4799999999988766655443


No 17 
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=56.68  E-value=4.9  Score=30.65  Aligned_cols=23  Identities=30%  Similarity=0.611  Sum_probs=18.1

Q ss_pred             hhhcCceEEeccccccccCCCcc
Q psy5991         195 HILRRPIIVYGVKYVKSFRGEDI  217 (223)
Q Consensus       195 nILRRPIIVy~~~~lr~~rGe~l  217 (223)
                      .+++|||||.+++++-.|+-+.+
T Consensus        89 ~likrPiv~~~~~~~vGf~~~~~  111 (132)
T 1z3e_A           89 GLLRRPIIIDEKRLQVGYNEDEI  111 (132)
T ss_dssp             GGBCSCEEECSSCEEESCCTTGG
T ss_pred             cceeCCEEEECCEEEEcCCHHHH
Confidence            46899999999888777765544


No 18 
>4en2_B Protein NEF; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Human immunodeficiency virus 1} PDB: 4emz_C 3tb8_A 2xi1_A 2xi1_B 1qa5_A* 1qa4_A 1zec_A
Probab=56.18  E-value=3.4  Score=35.71  Aligned_cols=54  Identities=17%  Similarity=0.160  Sum_probs=26.9

Q ss_pred             hcCCCCCCcchh---hhhhHHHHhhhhcCC---------------CCcccccccccceeeeee-------eCCCCcchhH
Q psy5991          58 EAEPHPVINWSH---ELLDKEAQQQLEAEP---------------HPVINWSHEVTAHLYALW-------NRSAGDCLLD  112 (223)
Q Consensus        58 E~~~~~~~~~~~---~~~~~~~~~~~~~~~---------------~~~LNW~~~~~~rL~pL~-------t~GDGNCLlH  112 (223)
                      |..|--|+-||.   +++|--+.+  +.|+               |-..-||    =+|+|+.       +.|+-|||||
T Consensus        93 EKGGLeGl~yS~kRq~ILdlwvy~--tqG~fpdWqnYTpGPG~RyPltFGWc----fKLVPV~~~~veea~~gE~n~LlH  166 (206)
T 4en2_B           93 EKGGLEGLIHSQRRQDILDLWIYH--TQGYFPDWQNYTPGPGVRYPLTFGWC----YKLVPVEPDKVEEANKGENTSLLH  166 (206)
T ss_dssp             HHCSSTTCBCCHHHHHHHHHHHHH--HHCBCTTSCCBCCCSSCBCBSSTTCC----EEEEECSHHHHHHHHHTTC-----
T ss_pred             hccCccccccccchhhhheeeEee--eeeecCCcccccCCCCcCCcccccee----eeeeeCCccccccCCcccccccCC
Confidence            344566888985   777765543  3332               2223333    2899986       5699999999


Q ss_pred             Hhhhh
Q psy5991         113 SLMQA  117 (223)
Q Consensus       113 A~S~~  117 (223)
                      -++|.
T Consensus       167 P~~~h  171 (206)
T 4en2_B          167 PVSLH  171 (206)
T ss_dssp             -----
T ss_pred             hHHhC
Confidence            99994


No 19 
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=55.38  E-value=4.9  Score=30.16  Aligned_cols=20  Identities=20%  Similarity=0.499  Sum_probs=16.0

Q ss_pred             hhcCceEEeccccccccCCC
Q psy5991         196 ILRRPIIVYGVKYVKSFRGE  215 (223)
Q Consensus       196 ILRRPIIVy~~~~lr~~rGe  215 (223)
                      .++|||||.+++++-.|+-+
T Consensus        93 likrPiv~~~~~~~vGf~~~  112 (120)
T 2kok_A           93 MVKRPVLERDGKLMVGFKPA  112 (120)
T ss_dssp             GBCSSEEEETTEEEECCCHH
T ss_pred             cEECCEEEECCEEEEeCCHH
Confidence            68999999998877666533


No 20 
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=53.16  E-value=5.3  Score=29.72  Aligned_cols=20  Identities=20%  Similarity=0.614  Sum_probs=15.8

Q ss_pred             hhhcCceEEeccccccccCC
Q psy5991         195 HILRRPIIVYGVKYVKSFRG  214 (223)
Q Consensus       195 nILRRPIIVy~~~~lr~~rG  214 (223)
                      ..++|||||.+++++-.|+-
T Consensus        87 ~likrPiv~~~~~~~vGf~~  106 (114)
T 1rw1_A           87 SMIKRPVLELGGRTLVGFKP  106 (114)
T ss_dssp             GGBCSCEEECSSCEEESCCH
T ss_pred             hheeCcEEEECCEEEEeCCH
Confidence            37899999999887766653


No 21 
>3ik5_A Protein NEF; protein-protein complex, cell membrane, lipoprotein, membran myristate; 2.05A {Simian immunodeficiency virus} SCOP: d.102.1.0 PDB: 3ioz_A
Probab=51.11  E-value=4  Score=33.59  Aligned_cols=54  Identities=17%  Similarity=0.187  Sum_probs=26.3

Q ss_pred             hcCCCCCCcchh---hhhhHHHHhhhhcCC---------------CCcccccccccceeeeee-----eCCCCcchhHHh
Q psy5991          58 EAEPHPVINWSH---ELLDKEAQQQLEAEP---------------HPVINWSHEVTAHLYALW-----NRSAGDCLLDSL  114 (223)
Q Consensus        58 E~~~~~~~~~~~---~~~~~~~~~~~~~~~---------------~~~LNW~~~~~~rL~pL~-----t~GDGNCLlHA~  114 (223)
                      |..|--||-||.   +++|--+.+  +.|.               |-..-||    =+|+|+.     +.|+-|||||-+
T Consensus        33 eKGGLeGl~yS~kR~~ILdl~~y~--~qG~~pdWqnYT~GPG~RyPltFGWc----fkLvPV~~~eea~~gE~n~LLHP~  106 (143)
T 3ik5_A           33 EKGGLEGIYYSARRHRILDIYLEK--EEGIIPDWQDYTSGPGIRYPKTFGWL----WKLVPVNVSDEAQEDEEHYLMHPA  106 (143)
T ss_dssp             HHTCSTTCBCCHHHHHHHHHHHHH--TTCBCSCCCCBCCCSSSBCBSSTTCC----EEEEEC----------------CC
T ss_pred             hcCCccceeeccchhhcceeEEEe--eccccCCcceeCCCCCccccccCcee----EEEeECCcCcccccccccccCChH
Confidence            445566788884   777766544  3332               2222333    2899985     568999999999


Q ss_pred             hhh
Q psy5991         115 MQA  117 (223)
Q Consensus       115 S~~  117 (223)
                      +|.
T Consensus       107 ~~h  109 (143)
T 3ik5_A          107 QTS  109 (143)
T ss_dssp             SCC
T ss_pred             Hhc
Confidence            985


No 22 
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=43.95  E-value=9.3  Score=29.92  Aligned_cols=18  Identities=22%  Similarity=0.272  Sum_probs=13.6

Q ss_pred             hhhcCceEEecccccccc
Q psy5991         195 HILRRPIIVYGVKYVKSF  212 (223)
Q Consensus       195 nILRRPIIVy~~~~lr~~  212 (223)
                      .+++|||||.+++.+--|
T Consensus        90 ~LikRPiv~~~~~~~vG~  107 (141)
T 1s3c_A           90 ILINRPIVVTPLGTRLCR  107 (141)
T ss_dssp             GGBCSCEEEETTEEEECS
T ss_pred             cceEccEEEECCEEEEEC
Confidence            579999999987654333


No 23 
>3b21_A ORF169B, OSPI; bacterial protein, effector, type 3 secretion SYST unknown function; 2.01A {Shigella flexneri}
Probab=27.27  E-value=32  Score=28.97  Aligned_cols=16  Identities=31%  Similarity=0.584  Sum_probs=9.9

Q ss_pred             CCCCcch---hHHhhhhhhc
Q psy5991         104 RSAGDCL---LDSLMQATWG  120 (223)
Q Consensus       104 ~GDGNCL---lHA~S~~mWG  120 (223)
                      -|||||-   +||. .+|.|
T Consensus        65 ggdgncsgcalhac-mamlg   83 (220)
T 3b21_A           65 GGDGNCSGCALHAC-MAMLG   83 (220)
T ss_dssp             CCCSCCHHHHHHHH-HHHTT
T ss_pred             CCCCCcchhHHHHH-HHHhc
Confidence            6899974   6653 34443


No 24 
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=20.92  E-value=78  Score=26.35  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=18.8

Q ss_pred             hhcCceEEeccccccccCCCccccc
Q psy5991         196 ILRRPIIVYGVKYVKSFRGEDIGYA  220 (223)
Q Consensus       196 ILRRPIIVy~~~~lr~~rGe~l~~~  220 (223)
                      -+..|||+++=+.  ||+|++|+.+
T Consensus       115 ~~gk~VI~~GL~~--DF~~~~F~~~  137 (195)
T 1w4r_A          115 NAGKTVIVAALDG--TFQRKPFGAI  137 (195)
T ss_dssp             HTTCEEEEEEESB--CTTSSBCTTG
T ss_pred             HCCCeEEEEeccc--ccccccchhH
Confidence            4788999999543  8999999875


No 25 
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=20.34  E-value=38  Score=28.09  Aligned_cols=21  Identities=38%  Similarity=0.517  Sum_probs=18.6

Q ss_pred             eeeCCCCcchhHHhhhhhhcc
Q psy5991         101 LWNRSAGDCLLDSLMQATWGV  121 (223)
Q Consensus       101 L~t~GDGNCLlHA~S~~mWGv  121 (223)
                      |.-.+||+-|+||++.++.|-
T Consensus        32 l~gHSDgDVl~HAi~DAlLGA   52 (160)
T 1gx1_A           32 LLAHSDGDVALHALTDALLGA   52 (160)
T ss_dssp             ECSSSCCCHHHHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHHHHHHh
Confidence            666899999999999999883


No 26 
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=20.15  E-value=39  Score=28.05  Aligned_cols=20  Identities=35%  Similarity=0.471  Sum_probs=18.3

Q ss_pred             eeeCCCCcchhHHhhhhhhc
Q psy5991         101 LWNRSAGDCLLDSLMQATWG  120 (223)
Q Consensus       101 L~t~GDGNCLlHA~S~~mWG  120 (223)
                      |.-.+||+-|+||++.++.|
T Consensus        34 l~gHSDgDVl~HAi~DAlLG   53 (160)
T 2pmp_A           34 CEAHSDGDVLLHCVVDAILG   53 (160)
T ss_dssp             ECSSSCCCHHHHHHHHHHHH
T ss_pred             CcccChHHHHHHHHHHHHHH
Confidence            66689999999999999988


No 27 
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=20.06  E-value=39  Score=28.01  Aligned_cols=21  Identities=33%  Similarity=0.514  Sum_probs=18.6

Q ss_pred             eeeCCCCcchhHHhhhhhhcc
Q psy5991         101 LWNRSAGDCLLDSLMQATWGV  121 (223)
Q Consensus       101 L~t~GDGNCLlHA~S~~mWGv  121 (223)
                      |.-.+||+-|+||++.++.|-
T Consensus        33 l~gHSDgDVl~HAi~DAlLGA   53 (159)
T 1t0a_A           33 LVAHSDGDVVLHAISDAILGA   53 (159)
T ss_dssp             ECCSSSCCHHHHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHHHHHHh
Confidence            666899999999999999883


Done!