RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5991
         (223 letters)



>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
           (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
           63363]}
          Length = 247

 Score = 29.5 bits (66), Expect = 0.24
 Identities = 7/36 (19%), Positives = 12/36 (33%)

Query: 29  FFSEIENLPPSIQEQLFDELLDKEAQQQLEAEPHPV 64
           F  EI  L    Q +L   +   +  +    +   V
Sbjct: 99  FLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEV 134


>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
           {Bacteriophage T4 [TaxId: 10665]}
          Length = 241

 Score = 26.8 bits (58), Expect = 2.0
 Identities = 9/85 (10%), Positives = 27/85 (31%), Gaps = 1/85 (1%)

Query: 50  DKEAQQQLEAEPHPVINWSHELLDKEAQQQLEAEPHPVINWSHEVTAHLYALWNRSAGDC 109
            ++A   L  +      +  +   KE+   +       +  + E    +  L      D 
Sbjct: 83  MEQAFCYLNGKSPIKGVFVFDDEGKESVNFVAFNKITDVINNIEDQWSVRRLMQALGTDL 142

Query: 110 LLDSLMQATWGV-FDRENVLRRALA 133
           ++++  +  W   F  + + +    
Sbjct: 143 IVNNFDRMYWVKLFALDYLDKFNSG 167


>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB)
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 114

 Score = 25.0 bits (54), Expect = 4.2
 Identities = 8/74 (10%), Positives = 20/74 (27%), Gaps = 2/74 (2%)

Query: 146 RWKEYEDMHASLLHFSLDESQWEEDWASLVSLASQPGAALEQLHVFALAH--ILRRPIIV 203
                        H               +  A +      +     LA   +++RP++ 
Sbjct: 36  GIDREHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKADLDEAKAIELMLAQPSMIKRPVLE 95

Query: 204 YGVKYVKSFRGEDI 217
            G + +  F+ +  
Sbjct: 96  LGGRTLVGFKPDAY 109


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 884,925
Number of extensions: 39278
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 16
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)