Query psy6
Match_columns 66
No_of_seqs 133 out of 1041
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 23:59:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4389|consensus 99.5 1.3E-14 2.8E-19 98.0 3.1 53 9-66 456-508 (601)
2 cd00312 Esterase_lipase Estera 99.3 3.3E-12 7.3E-17 85.1 4.2 47 14-66 414-460 (493)
3 PF00135 COesterase: Carboxyle 99.2 1.1E-11 2.3E-16 82.4 2.5 50 12-66 446-495 (535)
4 COG2272 PnbA Carboxylesterase 98.9 1.3E-09 2.7E-14 73.9 4.2 52 12-66 393-444 (491)
5 KOG1516|consensus 96.9 0.0011 2.4E-08 45.1 3.5 46 13-66 454-499 (545)
6 COG2238 RPS19A Ribosomal prote 42.1 12 0.00026 22.2 0.6 10 57-66 29-38 (147)
7 KOG1689|consensus 28.7 43 0.00094 20.7 1.5 23 44-66 45-67 (221)
8 PF05042 Caleosin: Caleosin re 26.3 38 0.00083 20.7 1.0 25 2-26 61-85 (174)
9 cd06254 M14_ASTE_ASPA_like_4 A 25.0 38 0.00083 21.7 0.9 23 4-26 6-32 (288)
10 cd06252 M14_ASTE_ASPA_like_2 A 23.9 33 0.00071 22.4 0.5 23 4-26 24-49 (316)
11 PRK09333 30S ribosomal protein 23.4 30 0.00065 20.7 0.2 10 57-66 29-38 (150)
12 PF09936 Methyltrn_RNA_4: SAM- 23.2 96 0.0021 19.2 2.3 18 44-61 50-67 (185)
13 KOG3847|consensus 22.9 33 0.00071 23.4 0.3 46 16-64 322-369 (399)
14 PF13869 NUDIX_2: Nucleotide h 21.3 16 0.00034 22.6 -1.3 22 45-66 20-41 (188)
No 1
>KOG4389|consensus
Probab=99.50 E-value=1.3e-14 Score=98.02 Aligned_cols=53 Identities=40% Similarity=0.600 Sum_probs=48.1
Q ss_pred ccccCCCCCCCCccccHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhcC
Q psy6 9 FIVLLFQRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66 (66)
Q Consensus 9 ~~~~~p~~~Ga~H~~dl~yifg~~~~~~~~~~~~~~~~~d~~ls~~m~~~w~~Fak~G 66 (66)
..+.+|.|.||.||.||-|+||.|+.. ....+++|+.+|++||++|+||||||
T Consensus 456 Sa~pWP~WmGVmHGYEIEyvFG~PL~~-----s~nYt~~E~~ls~rim~~WanFAktG 508 (601)
T KOG4389|consen 456 SANPWPKWMGVMHGYEIEYVFGIPLNY-----SRNYTKEEKILSRRIMRYWANFAKTG 508 (601)
T ss_pred cCCCchhhhcCcccceEEEEecccccc-----cccccHHHHHHHHHHHHHHHHHhhcC
Confidence 456789999999999999999999874 36789999999999999999999998
No 2
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.29 E-value=3.3e-12 Score=85.10 Aligned_cols=47 Identities=36% Similarity=0.683 Sum_probs=39.5
Q ss_pred CCCCCCCccccHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhcC
Q psy6 14 FQRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66 (66)
Q Consensus 14 p~~~Ga~H~~dl~yifg~~~~~~~~~~~~~~~~~d~~ls~~m~~~w~~Fak~G 66 (66)
+++.||+|++||+|+|+++... ...+++|++++++|+++|+||||+|
T Consensus 414 ~~~~Ga~H~~Dl~ylFg~~~~~------~~~~~~d~~ls~~m~~~w~nFaktG 460 (493)
T cd00312 414 PPWLGTVHGDEIFFVFGNPLLK------EGLREEEEKLSRTMMKYWANFAKTG 460 (493)
T ss_pred CCCCCcccCCceeeecCCCCCC------CCCCcHHHHHHHHHHHHHHHHhhhC
Confidence 5678999999999999986542 1234788999999999999999987
No 3
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.18 E-value=1.1e-11 Score=82.41 Aligned_cols=50 Identities=34% Similarity=0.676 Sum_probs=41.4
Q ss_pred cCCCCCCCCccccHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhcC
Q psy6 12 LLFQRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66 (66)
Q Consensus 12 ~~p~~~Ga~H~~dl~yifg~~~~~~~~~~~~~~~~~d~~ls~~m~~~w~~Fak~G 66 (66)
..+++.||+|++|++|+|+.+.... ...+++|+++++.|+++|+||||+|
T Consensus 446 ~~~~~~ga~H~~Dl~ylFg~~~~~~-----~~~~~~~~~ls~~m~~~w~nFak~G 495 (535)
T PF00135_consen 446 PDPPWRGACHGDDLPYLFGNPFLSP-----PNPTEDDRKLSDQMQRYWTNFAKTG 495 (535)
T ss_dssp CSETTGTSBTTTTHHHHTTGCCHCH-----HHTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccccchhhhhhhcCCCcccc-----cccccHHHHHHHHHHHHHHhcCCCC
Confidence 3456789999999999999876542 1227889999999999999999997
No 4
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.93 E-value=1.3e-09 Score=73.85 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=42.1
Q ss_pred cCCCCCCCCccccHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhcC
Q psy6 12 LLFQRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66 (66)
Q Consensus 12 ~~p~~~Ga~H~~dl~yifg~~~~~~~~~~~~~~~~~d~~ls~~m~~~w~~Fak~G 66 (66)
.+++..||+|+.||+|+||+...... .......+.+++++|.++|+||||+|
T Consensus 393 ~~~~~~gA~H~~El~~Vfg~~~~~~~---~~~~~~~~~~~s~~~~~~w~nFArtg 444 (491)
T COG2272 393 VRVPGFGAPHATELSLVFGNLVALGS---AAQTARATAKLSRQMQDAWANFARTG 444 (491)
T ss_pred cccccCCCccccceeeeecccccccc---ccccchHHHHHHHHHHHHHHHHHhcC
Confidence 45677899999999999998873321 23456667899999999999999987
No 5
>KOG1516|consensus
Probab=96.93 E-value=0.0011 Score=45.10 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=34.2
Q ss_pred CCCCCCCCccccHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhcC
Q psy6 13 LFQRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66 (66)
Q Consensus 13 ~p~~~Ga~H~~dl~yifg~~~~~~~~~~~~~~~~~d~~ls~~m~~~w~~Fak~G 66 (66)
.+...|+.|++|+.|+|+...... ....+..+..+ +.+|++||++|
T Consensus 454 ~~~~~~~~h~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~fa~~g 499 (545)
T KOG1516|consen 454 KDPDTGVEHADDLRYLFGENFLKR----PVMKSSFEKKL----IELWTNFAKTG 499 (545)
T ss_pred ccCccCCcccccceeecccccccc----CCCCChHHHHH----HHHHHHHHhhC
Confidence 355679999999999999765422 23445566655 99999999986
No 6
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=42.08 E-value=12 Score=22.24 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=8.3
Q ss_pred HHHHHHhhcC
Q psy6 57 TYLSNFVRTG 66 (66)
Q Consensus 57 ~~w~~Fak~G 66 (66)
.-|++|+|||
T Consensus 29 P~wa~~vKTG 38 (147)
T COG2238 29 PEWADIVKTG 38 (147)
T ss_pred hhhhhhhhcc
Confidence 3499999997
No 7
>KOG1689|consensus
Probab=28.65 E-value=43 Score=20.74 Aligned_cols=23 Identities=4% Similarity=0.267 Sum_probs=17.6
Q ss_pred CChHHHHHHHHHHHHHHHHhhcC
Q psy6 44 YTKPEIQLSEMLMTYLSNFVRTG 66 (66)
Q Consensus 44 ~~~~d~~ls~~m~~~w~~Fak~G 66 (66)
..+.|..+++++.++=.+|.+.|
T Consensus 45 ~~eKD~svadrf~rmk~ey~k~g 67 (221)
T KOG1689|consen 45 LREKDESVADRFARMKIEYMKEG 67 (221)
T ss_pred hhhccchHHHHHHHHHHHHHhhh
Confidence 35677788888888888887754
No 8
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=26.30 E-value=38 Score=20.73 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=19.7
Q ss_pred CCCCcccccccCCCCCCCCccccHH
Q psy6 2 GSVPVEFFIVLLFQRQGCVQGEELP 26 (66)
Q Consensus 2 ~~~~~~~~~~~~p~~~Ga~H~~dl~ 26 (66)
+-+|..++.........+-||+|-.
T Consensus 61 ~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 61 SWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred CCCCCCceeEEeecccccccCCCcc
Confidence 4578888887777888899998865
No 9
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=24.98 E-value=38 Score=21.70 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=14.7
Q ss_pred CCcccccccCCC----CCCCCccccHH
Q psy6 4 VPVEFFIVLLFQ----RQGCVQGEELP 26 (66)
Q Consensus 4 ~~~~~~~~~~p~----~~Ga~H~~dl~ 26 (66)
+|...+....+. ..+..||+|+.
T Consensus 6 ~pv~~~~g~~~gp~v~i~agvHG~E~~ 32 (288)
T cd06254 6 IPVTLINGVNPGPTLAITAGVHGGEYP 32 (288)
T ss_pred ccEEEEeCCCCCCEEEEEecccCCchh
Confidence 566666555443 23888999874
No 10
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=23.92 E-value=33 Score=22.38 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=14.1
Q ss_pred CCcccccccCCC---CCCCCccccHH
Q psy6 4 VPVEFFIVLLFQ---RQGCVQGEELP 26 (66)
Q Consensus 4 ~~~~~~~~~~p~---~~Ga~H~~dl~ 26 (66)
+|...+....-+ ..|..||+|+.
T Consensus 24 iPv~v~~g~~gp~v~I~aGiHGdE~~ 49 (316)
T cd06252 24 IPITVIKNGDGPTVLLTGGNHGDEYE 49 (316)
T ss_pred eeEEEEeCCCCCEEEEEccCCCCchH
Confidence 455555544322 34899999983
No 11
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=23.40 E-value=30 Score=20.66 Aligned_cols=10 Identities=40% Similarity=0.657 Sum_probs=8.0
Q ss_pred HHHHHHhhcC
Q psy6 57 TYLSNFVRTG 66 (66)
Q Consensus 57 ~~w~~Fak~G 66 (66)
.-|++|+|||
T Consensus 29 P~W~~~vKTg 38 (150)
T PRK09333 29 PEWAAFVKTG 38 (150)
T ss_pred Ccchhhhccc
Confidence 4589999887
No 12
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=23.16 E-value=96 Score=19.21 Aligned_cols=18 Identities=11% Similarity=0.146 Sum_probs=14.2
Q ss_pred CChHHHHHHHHHHHHHHH
Q psy6 44 YTKPEIQLSEMLMTYLSN 61 (66)
Q Consensus 44 ~~~~d~~ls~~m~~~w~~ 61 (66)
.-++.++++++++++|..
T Consensus 50 Pl~~Q~~l~~ril~hW~~ 67 (185)
T PF09936_consen 50 PLEAQRELAERILGHWQE 67 (185)
T ss_dssp --HHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhccc
Confidence 356788999999999974
No 13
>KOG3847|consensus
Probab=22.91 E-value=33 Score=23.42 Aligned_cols=46 Identities=11% Similarity=0.160 Sum_probs=26.2
Q ss_pred CCCCCcc--ccHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q psy6 16 RQGCVQG--EELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVR 64 (66)
Q Consensus 16 ~~Ga~H~--~dl~yifg~~~~~~~~~~~~~~~~~d~~ls~~m~~~w~~Fak 64 (66)
..|+.|. +|+||++++..... +....+.+...-.+.+++.-.+|-+
T Consensus 322 ~~GsVHqnfsDfpfv~p~~i~k~---f~~kg~~dpy~~~~~~~r~slaFLq 369 (399)
T KOG3847|consen 322 LDGSVHQNFSDFPFVTPNWIGKV---FKVKGETDPYEAMQIAIRASLAFLQ 369 (399)
T ss_pred EccceecccccCccccHHHHHHH---hccCCCCChHHHHHHHHHHHHHHHH
Confidence 3589998 89999998644321 1122333334444555566566654
No 14
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=21.29 E-value=16 Score=22.61 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=16.3
Q ss_pred ChHHHHHHHHHHHHHHHHhhcC
Q psy6 45 TKPEIQLSEMLMTYLSNFVRTG 66 (66)
Q Consensus 45 ~~~d~~ls~~m~~~w~~Fak~G 66 (66)
.++|..+++++.++-.+|.+.|
T Consensus 20 ~ekd~s~~~rl~rl~~~y~~~G 41 (188)
T PF13869_consen 20 PEKDPSVAARLQRLKENYEKEG 41 (188)
T ss_dssp --SSSSHHHHHHHHHHHHHHHS
T ss_pred cccccCHHHHHHHHHHHHHHhC
Confidence 3455678888999999998876
Done!