RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6
(66 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 44.6 bits (106), Expect = 3e-07
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 22 GEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66
G++LPY+FG PL Y++ E LS +M Y +NF +TG
Sbjct: 430 GDDLPYVFGNPL-----MRKLLYSEEEEILSRRMMGYWTNFAKTG 469
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 38.5 bits (90), Expect = 5e-05
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 18 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66
G V G+E+ ++FG PL + + E +LS +M Y +NF +TG
Sbjct: 418 GTVHGDEIFFVFGNPL------LKEGLREEEEKLSRTMMKYWANFAKTG 460
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 26.6 bits (59), Expect = 0.75
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 18 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66
G EL +FG LV + +LS + +NF RTG
Sbjct: 399 GAPHATELSLVFGN-LVALGSAAQ--TARATAKLSRQMQDAWANFARTG 444
>gnl|CDD|212881 cd11948, SH3_GRAP_N, N-terminal Src homology 3 domain of
GRB2-related adaptor protein. GRAP is a GRB-2 like
adaptor protein that is highly expressed in lymphoid
tissues. It acts as a negative regulator of T cell
receptor (TCR)-induced lymphocyte proliferation by
downregulating the signaling to the Ras/ERK pathway. It
has been identified as a regulator of TGFbeta signaling
in diabetic kidney tubules and may have a role in the
pathogenesis of the disease. GRAP contains an
N-terminal SH3 domain, a central SH2 domain, and a
C-terminal SH3 domain. The N-terminal SH3 domain of the
related protein GRB2 binds to Sos and Sos-derived
proline-rich peptides. SH3 domains are protein
interaction domains that bind to proline-rich ligands
with moderate affinity and selectivity, preferentially
to PxxP motifs. They play versatile and diverse roles
in the cell including the regulation of enzymes,
changing the subcellular localization of signaling
pathway components, and mediating the formation of
multiprotein complex assemblies.
Length = 54
Score = 25.2 bits (55), Expect = 1.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 23 EELPYMFGAPLVGGMGYFPKNYTK 46
E+ + A L G GY PKNY K
Sbjct: 30 EDDQNWYKAELQGREGYIPKNYIK 53
>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal
peroxisomal membrane protein Pex13p. Pex13p, located
in the peroxisomal membrane, contains two transmembrane
regions and a C-terminal SH3 domain. It binds to the
peroxisomal targeting type I (PTS1) receptor Pex5p and
the docking factor Pex14p through its SH3 domain. It is
essential for both PTS1 and PTS2 protein import
pathways into the peroxisomal matrix. Pex13p binds
Pex14p, which contains a PxxP motif, in a classical
fashion to the proline-rich ligand binding site of its
SH3 domain. It binds the WxxxF/Y motif of Pex5p in a
novel site that does not compete with Pex14p binding.
SH3 domains are protein interaction domains that bind
to proline-rich ligands with moderate affinity and
selectivity, preferentially to PxxP motifs. They play
versatile and diverse roles in the cell including the
regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 60
Score = 24.5 bits (54), Expect = 2.1
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 35 GGMGYFPKNY 44
G +G+FP NY
Sbjct: 48 GRIGWFPSNY 57
>gnl|CDD|235417 PRK05337, PRK05337, beta-hexosaminidase; Provisional.
Length = 337
Score = 25.1 bits (56), Expect = 2.5
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 32 PLVGGMGYFPKNYTKPEIQLSE 53
PLVGG+ F +N+ P QL E
Sbjct: 24 PLVGGVILFARNFEDPA-QLRE 44
>gnl|CDD|212817 cd11884, SH3_MYO15, Src Homology 3 domain of Myosin XV. This
subfamily is composed of proteins with similarity to
Myosin XVa. Myosin XVa is an unconventional myosin that
is critical for the normal growth of mechanosensory
stereocilia of inner ear hair cells. Mutations in the
myosin XVa gene are associated with nonsyndromic
hearing loss. Myosin XVa contains a unique N-terminal
extension followed by a motor domain, light
chain-binding IQ motifs, and a tail consisting of a
pair of MyTH4-FERM tandems separated by a SH3 domain,
and a PDZ domain. SH3 domains bind to proline-rich
ligands with moderate affinity and selectivity,
preferentially to PxxP motifs; they play a role in the
regulation of enzymes by intramolecular interactions,
changing the subcellular localization of signal pathway
components and mediate multiprotein complex assemblies.
Length = 56
Score = 23.4 bits (51), Expect = 4.6
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 10 IVLLFQRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKP 47
++ L ++G + ++FG L G G FPK Y +P
Sbjct: 23 VIKLLPKEGPLDPG---WLFGT-LDGRSGAFPKEYVQP 56
>gnl|CDD|165123 PHA02756, PHA02756, hypothetical protein; Provisional.
Length = 164
Score = 23.7 bits (51), Expect = 8.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 24 ELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSN 61
+LP+ FG P VGG P + P I +++T SN
Sbjct: 22 QLPWFFGIPSVGGFILTPSAH--PYIPPLSLIITKPSN 57
>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family. The
proteins of the Trk family are derived from
Gram-negative and Gram-positive bacteria, yeast and
wheat. The proteins of E. coli K12 TrkH and TrkG as well
as several yeast proteins have been functionally
characterized.The E. coli TrkH and TrkG proteins are
complexed to two peripheral membrane proteins, TrkA, an
NAD-binding protein, and TrkE, an ATP-binding protein.
This complex forms the potassium uptake system. This
family is specific for the eukaryotic Trk system
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 800
Score = 23.8 bits (51), Expect = 8.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 47 PEIQLSEMLMTYLS 60
P IQ+S MLM Y+S
Sbjct: 646 PAIQVSYMLMMYVS 659
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.145 0.443
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,481,137
Number of extensions: 253549
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 9
Length of query: 66
Length of database: 10,937,602
Length adjustment: 37
Effective length of query: 29
Effective length of database: 9,296,504
Effective search space: 269598616
Effective search space used: 269598616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)