RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6
(66 letters)
>d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray
(Torpedo californica) [TaxId: 7787]}
Length = 532
Score = 50.9 bits (120), Expect = 5e-10
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 18 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66
G + G E+ ++FG PLV + NYT E LS +M Y + F +TG
Sbjct: 434 GVIHGYEIEFVFGLPLVKEL-----NYTAEEEALSRRIMHYWATFAKTG 477
>d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol
esterase) {Cow (Bos taurus) [TaxId: 9913]}
Length = 579
Score = 50.4 bits (119), Expect = 7e-10
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 18 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66
G ++L Y+FG P P Y + +S+ ++ Y +NF RTG
Sbjct: 432 GADHADDLQYVFGKPFA-----TPLGYRAQDRTVSKAMIAYWTNFARTG 475
>d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId:
5061]}
Length = 517
Score = 50.2 bits (118), Expect = 8e-10
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 18 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66
G ELP +FGA G + +Y + + M Y +FV+T
Sbjct: 416 GVPHTFELPAIFGAGSTGTL-SSDSSYLTYNAAIIPVTMHYFISFVQTL 463
>d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 542
Score = 49.7 bits (117), Expect = 1e-09
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 18 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66
G G E+ ++FG PL + NYT E ++ LM Y +NF RTG
Sbjct: 444 GVPHGYEIEFIFGLPLDPSL-----NYTTEERIFAQRLMKYWTNFARTG 487
>d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 526
Score = 49.7 bits (117), Expect = 1e-09
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 18 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66
G + G E+ ++FG PL YTK E LS ++ +NF + G
Sbjct: 432 GVMHGYEIEFVFGLPL-----ERRDQYTKAEEILSRSIVKRWANFAKYG 475
>d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver
carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]}
Length = 532
Score = 48.6 bits (114), Expect = 3e-09
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 18 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66
G+EL +FGAP + + ++ EI+LS+M+M + +NF R G
Sbjct: 444 IGDHGDELFSVFGAP------FLKEGASEEEIRLSKMVMKFWANFARNG 486
>d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 571
Score = 48.2 bits (113), Expect = 4e-09
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 12 LLFQRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66
L + G + G+E+ Y FG PL + Y E +L + +++ + F +TG
Sbjct: 469 LWGEWMGVLHGDEIEYFFGQPLNNSL-----QYRPVERELGKRMLSAVIEFAKTG 518
>d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB
esterase) {Bacillus subtilis [TaxId: 1423]}
Length = 483
Score = 47.8 bits (112), Expect = 7e-09
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 18 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66
ELP++FG L G T QLS + + F +TG
Sbjct: 395 KAFHALELPFVFG-NLDGLERMAKAEITDEVKQLSHTIQSAWITFAKTG 442
>d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus
(Geotrichum candidum), ATCC 34614 [TaxId: 27317]}
Length = 544
Score = 37.0 bits (84), Expect = 4e-05
Identities = 7/49 (14%), Positives = 12/49 (24%), Gaps = 16/49 (32%)
Query: 18 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66
G G EL + F + + + Y +F
Sbjct: 460 GTFHGNELIFQFNVNI----------------GPANSYLRYFISFANHH 492
>d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida
cylindracea, cholesterol esterase [TaxId: 44322]}
Length = 534
Score = 29.3 bits (64), Expect = 0.023
Identities = 3/49 (6%), Positives = 7/49 (14%), Gaps = 16/49 (32%)
Query: 18 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 66
G ++ + S + F
Sbjct: 446 GTFHANDIVWQDYLLG----------------SGSVIYNNAFIAFATDL 478
>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 23.9 bits (52), Expect = 0.66
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 35 GGMGYFPKNYTKP 47
G G+ P NY P
Sbjct: 43 NGQGWVPSNYITP 55
>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Caenorhabditis
elegans, SEM-5 [TaxId: 6239]}
Length = 58
Score = 23.9 bits (52), Expect = 0.72
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 35 GGMGYFPKNYTKP 47
G FP NY P
Sbjct: 44 NRRGIFPSNYVCP 56
>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 23.9 bits (52), Expect = 0.89
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 35 GGMGYFPKNYTKP 47
G G FP+NY P
Sbjct: 43 GQTGMFPRNYVTP 55
>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 59
Score = 23.7 bits (51), Expect = 0.90
Identities = 4/20 (20%), Positives = 5/20 (25%)
Query: 28 MFGAPLVGGMGYFPKNYTKP 47
G G+ P N
Sbjct: 36 WKVRNASGDSGFVPNNILDI 55
>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 57
Score = 23.5 bits (51), Expect = 1.0
Identities = 4/20 (20%), Positives = 5/20 (25%)
Query: 28 MFGAPLVGGMGYFPKNYTKP 47
G G P Y +
Sbjct: 37 WNAEDSEGKRGMIPVPYVEK 56
>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 23.6 bits (51), Expect = 1.1
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 27 YMFGAPLVGGMGYFPKNYTKP 47
+ G +G PKNY
Sbjct: 43 WWKCKNARGQVGLVPKNYVVV 63
>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 23.5 bits (51), Expect = 1.2
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 35 GGMGYFPKNYTKP 47
+G FP NY P
Sbjct: 43 NKLGLFPANYVAP 55
>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human
(Homo sapiens) [TaxId: 9606]}
Length = 65
Score = 23.6 bits (51), Expect = 1.2
Identities = 5/13 (38%), Positives = 5/13 (38%)
Query: 35 GGMGYFPKNYTKP 47
GY P NY
Sbjct: 47 RKEGYIPSNYVAR 59
>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 23.6 bits (51), Expect = 1.2
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 35 GGMGYFPKNYTKP 47
G GY P NY P
Sbjct: 46 GQTGYIPSNYVAP 58
>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor
1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 24.2 bits (52), Expect = 1.2
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 35 GGMGYFPKNYTKP 47
GYFP Y +
Sbjct: 56 DVTGYFPSMYLQK 68
>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId:
9606]}
Length = 62
Score = 23.5 bits (51), Expect = 1.3
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 35 GGMGYFPKNYTKP 47
G +G FPK + +
Sbjct: 47 GKVGIFPKVFVED 59
>d3bula1 a.46.1.1 (A:651-740) Methionine synthase domain
{Escherichia coli [TaxId: 562]}
Length = 90
Score = 23.6 bits (51), Expect = 1.4
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 16 RQGCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMT 57
+ Q + PL+ GM + + ++ L +++ +
Sbjct: 30 EEARQQATRPCEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKS 71
>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 69
Score = 23.3 bits (50), Expect = 1.5
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 35 GGMGYFPKNYTKP 47
+G+FP N P
Sbjct: 55 NEVGWFPCNRVHP 67
>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 57
Score = 23.1 bits (50), Expect = 1.5
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 35 GGMGYFPKNYTKP 47
G GY P NY P
Sbjct: 44 GETGYIPSNYVAP 56
>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 69
Score = 23.2 bits (50), Expect = 1.7
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 35 GGMGYFPKNYTKP 47
G FP NY KP
Sbjct: 49 DRSGIFPSNYVKP 61
>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 23.2 bits (50), Expect = 1.7
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 27 YMFGAPLVGGMGYFPKNYTKPE 48
+ G GY P NY +
Sbjct: 37 WWRARDKYGSEGYIPSNYVTGK 58
>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 23.3 bits (50), Expect = 1.9
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 35 GGMGYFPKNYTKP 47
G GY P NY +
Sbjct: 59 GKKGYVPSNYIRK 71
>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 58
Score = 22.7 bits (49), Expect = 2.3
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 35 GGMGYFPKNYTKPEI 49
G G FP N+ ++
Sbjct: 44 RGTGLFPSNFVTTDL 58
>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 22.8 bits (49), Expect = 2.3
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 27 YMFGAPLVGGMGYFPKNYTKP 47
+ G GY P NY
Sbjct: 43 WWRARDKNGQEGYIPSNYVTE 63
>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 23.0 bits (49), Expect = 2.6
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 7 EFFIVLLFQRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKP 47
+ ++L G QGE + G+FP ++ K
Sbjct: 30 QLILILKKNTSGWWQGE----LQARGKKRQKGWFPASHVKL 66
>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
Length = 967
Score = 23.4 bits (50), Expect = 2.7
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 2 GSVPVEFFIVLLFQRQGC-----VQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSE 53
G+ + +L+ Q + PY+FGAP+ N P+ +LS
Sbjct: 430 GNTAQQAAEILIPADQTSYGANETRALSAPYLFGAPI---------NMLAPDARLST 477
>d1s58a_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Human parvovirus B19 [TaxId: 10798]}
Length = 536
Score = 23.3 bits (50), Expect = 2.8
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 24 ELPYMFGAPLVGGMGYFPKNYTKP 47
+ PY+ G P P
Sbjct: 140 KYPYVLGQGQDTLAPELPIWVYFP 163
>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 22.4 bits (48), Expect = 3.0
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 35 GGMGYFPKNYTKP 47
G G P NY +
Sbjct: 47 GRTGMLPANYVEA 59
>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 22.5 bits (48), Expect = 3.0
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 35 GGMGYFPKNYTKP 47
G G+FP NY +
Sbjct: 52 GRTGWFPSNYVRE 64
>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 22.4 bits (48), Expect = 3.1
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 21 QGEELPYMFGAPLVGGMGYFPKNYTK 46
+ + + + G G FP NY +
Sbjct: 31 KSDSQNDWWTGRVNGREGIFPANYVE 56
>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor
1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 22.5 bits (48), Expect = 3.1
Identities = 3/22 (13%), Positives = 9/22 (40%)
Query: 26 PYMFGAPLVGGMGYFPKNYTKP 47
+ + G+ P ++ +P
Sbjct: 35 SGWWFCQMKAKRGWIPASFLEP 56
>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 55
Score = 22.3 bits (48), Expect = 3.2
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 35 GGMGYFPKNYTKP 47
G+ P Y K
Sbjct: 42 DRQGFVPAAYVKK 54
>d1szwa_ d.265.1.4 (A:) tRNA pseudouridine synthase TruD
{Escherichia coli [TaxId: 562]}
Length = 341
Score = 23.1 bits (49), Expect = 3.2
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 23 EELPYMFGAPLVGG 36
+ L Y+ G P G
Sbjct: 5 DNLTYLHGKPQGTG 18
>d1c8da_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Canine parvovirus [TaxId: 10788]}
Length = 548
Score = 23.0 bits (49), Expect = 3.3
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 24 ELPYMFGAPLVGGMGYFPKNYTKP 47
+P+ A +G++P T P
Sbjct: 146 TMPFTPAAMRSETLGFYPWKPTIP 169
>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 74
Score = 22.8 bits (48), Expect = 3.3
Identities = 3/13 (23%), Positives = 5/13 (38%)
Query: 35 GGMGYFPKNYTKP 47
G+ P + P
Sbjct: 55 AAEGWVPGSILAP 67
>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 83
Score = 22.6 bits (48), Expect = 3.4
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 18 GCVQGEELPYMFGAPLVGGM-GYFPKNYTKP 47
G + G + + G FP+N+T+
Sbjct: 51 GWLMGVKESDWNQHKELEKCRGVFPENFTER 81
>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 74
Score = 22.5 bits (48), Expect = 3.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 35 GGMGYFPKNYTKP 47
GG G+FPK+Y K
Sbjct: 51 GGRGWFPKSYVKI 63
>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 22.8 bits (48), Expect = 3.6
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 35 GGMGYFPKNYTKPEIQLSE 53
+GYFP + + + L
Sbjct: 74 ARLGYFPSSIVREDQTLKP 92
>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 22.5 bits (48), Expect = 3.7
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 35 GGMGYFPKNYTKP 47
G G P NY +
Sbjct: 50 GREGIIPANYVQK 62
>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 22.3 bits (47), Expect = 4.4
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 35 GGMGYFPKNYTKP 47
G G+FP NY +
Sbjct: 49 GNFGWFPCNYVEK 61
>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN
cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 72
Score = 22.1 bits (47), Expect = 4.6
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 35 GGMGYFPKNYTKP 47
G+FP +YTK
Sbjct: 53 KARGWFPSSYTKL 65
>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 22.4 bits (47), Expect = 4.7
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 21 QGEELPYMFGAPLVGGMGYFPKNYTKP 47
+E + G L G G P N+
Sbjct: 53 DMDEDGFYEGELLDGQRGLVPSNFVDF 79
>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 22.0 bits (47), Expect = 4.9
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 35 GGMGYFPKNYTK 46
G G+ PKNY +
Sbjct: 43 GKDGFIPKNYIE 54
>d1mvma_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Murine minute virus, strain i [TaxId: 10794]}
Length = 549
Score = 22.5 bits (48), Expect = 5.5
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 24 ELPYMFGAPLVGGMGYFPKNYTKP 47
LPY A + +G++P T
Sbjct: 147 ILPYTPAANSMETLGFYPWKPTIA 170
>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 21.7 bits (46), Expect = 5.9
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 35 GGMGYFPKNYTKP 47
G G P+NY +
Sbjct: 53 GKTGLIPENYVEF 65
>d1lp3a_ b.121.5.2 (A:) Dependovirus capsid protein
{Adeno-associated virus, aav-2 [TaxId: 272636]}
Length = 519
Score = 22.2 bits (47), Expect = 7.1
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 24 ELPYMFGAPLVGGMGYFPKNYTKP 47
+LPY+ G+ G + FP +
Sbjct: 133 QLPYVLGSAHQGCLPPFPADVFMV 156
>d1k3va_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Porcine parvovirus [TaxId: 10796]}
Length = 542
Score = 22.2 bits (47), Expect = 7.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 24 ELPYMFGAPLVGGMGYFPKNYTKP 47
LPY AP +G++P TKP
Sbjct: 145 TLPYTPAAPRSETLGFYPWLPTKP 168
>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 63
Score = 21.3 bits (45), Expect = 7.6
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 35 GGMGYFPKNYTKP 47
GY P+N
Sbjct: 49 DKEGYVPRNLLGL 61
>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 21.8 bits (46), Expect = 8.3
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 35 GGMGYFPKNYTKP 47
G G+FP ++ K
Sbjct: 7 GQKGWFPASHVKL 19
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.145 0.443
Gapped
Lambda K H
0.267 0.0632 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 248,389
Number of extensions: 8940
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 54
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)