RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy600
(494 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 385 bits (992), Expect = e-129
Identities = 168/495 (33%), Positives = 242/495 (48%), Gaps = 55/495 (11%)
Query: 9 QDPQPHPGWSDTKNATEHGNECPQRNYF-----NHQLIGSDNCLFLNVYTPKI-DPNAKL 62
+ PQP W+ +AT++G CPQ N N S++CL+LNVYTPK+ + KL
Sbjct: 41 KKPQPPEPWTGVLDATKYGPACPQNNDLGSEMWNKNTGMSEDCLYLNVYTPKLASESKKL 100
Query: 63 PVMVYIHGGAFKGG----NTRFLKEKFIMDKNIVYVAIQYRIGILGFMSFLDDVIPGNFG 118
PVMV+IHGG F+ G + + +++V V I YR+G LGF+S D +PGN G
Sbjct: 101 PVMVWIHGGGFQSGSASLDDYDGPDLA-ASEDVVVVTINYRLGALGFLSTGDSELPGNAG 159
Query: 119 LKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPLAKGLFHNAIIQGGTA 178
L DQ+ AL+WV+DNIA FGGDP VT+FG SAGAA+V L++SP ++GLFH AI+ G+A
Sbjct: 160 LLDQVLALRWVKDNIAAFGGDPDNVTLFGESAGAASVSLLLLSPASRGLFHRAILMSGSA 219
Query: 179 TSPWAYIPQTVAKQRAEAVATLLGCP-SKPTTEALACMRDIPSDNFIIVTDKFLEWDLSP 237
SPWA +QRA+ +A LLGCP + E L C+R ++ + +
Sbjct: 220 LSPWAITSN--PRQRAKRLAKLLGCPGEDSSAELLECLRKKSAEELLDAQLLL--LEEVG 275
Query: 238 LGPFSPITDSFMGAGAVVPDHPLAL----PPNPVNIILGYNSYEGNMIASMVCFNEFRLA 293
PF P+ D G +P P L N V +++G S EG LA
Sbjct: 276 FFPFGPVVD-----GDFLPKDPEELLKSGWFNKVPLLIGVTSDEGL----------LFLA 320
Query: 294 RDMEVDLPRRLALLTNLQDQVKY-----SEKAKVADRLFEFYLNSQN-ISKDNVYKFADL 347
+ L + + + E +++AD L E Y + + S+++ DL
Sbjct: 321 YVLPDPTELSELLNEDFLELLPELLPGAPELSRIADALKEEYTDDPDDNSEESRDALVDL 380
Query: 348 GTDILFGHPSFKAALNY-YKKVPLYFYLYDITPRITLLTMFGNCTHLRGPSHGEEIVYFF 406
+D LF P AA P+Y Y +D ++ G SHG+++ Y F
Sbjct: 381 LSDYLFVCPIRLAAARLASAGSPVYLYRFDYRSS---GSINKLWPPWMGVSHGDDLPYVF 437
Query: 407 -NDIIPNFELTPEEHKLSHRLLDLWTSFASTGVPSDT------WTPVASDRIEYLHMTND 459
N ++ + EE LS R++ WT+FA TG P+ W P EYL +T
Sbjct: 438 GNPLMRKLLYSEEEEILSRRMMGYWTNFAKTGNPNGEAFGLPVWPPY--TSEEYLEITLL 495
Query: 460 GFKMARGLYEDRMRF 474
GL E+ F
Sbjct: 496 NI-STNGLREEDCNF 509
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 369 bits (949), Expect = e-123
Identities = 171/478 (35%), Positives = 244/478 (51%), Gaps = 43/478 (8%)
Query: 10 DPQPHPGWSDTKNATEHGNECPQRNYFNHQ-----LIGSDNCLFLNVYTPK-IDPNAKLP 63
+PQP+ WSD +AT + C Q + L GS++CL+LNVYTPK P LP
Sbjct: 37 EPQPYEPWSDVLDATSYPPSCMQWDQLGGGLWNAKLPGSEDCLYLNVYTPKNTKPGNSLP 96
Query: 64 VMVYIHGGAFK-GGNTRFLKEKFIMD-KNIVYVAIQYRIGILGFMSFLDDVIPGNFGLKD 121
VMV+IHGG F G + + + + N++ V+I YR+G+LGF+S D +PGN+GLKD
Sbjct: 97 VMVWIHGGGFMFGSGSLYPGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNYGLKD 156
Query: 122 QIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPLAKGLFHNAIIQGGTATSP 181
Q ALKWVQDNIA FGGDP VTIFG SAG A+V L++SP +KGLFH AI Q G+A SP
Sbjct: 157 QRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALSP 216
Query: 182 WAYIPQTVAKQRAEAVATLLGCPSKPTTEALACMRDIPSDNFIIVTDKFLEWDLSPLGPF 241
WA Q A+ RA+ +A LLGC + E L C+R ++ + T K L + SP PF
Sbjct: 217 WA--IQENARGRAKRLARLLGCNDTSSAELLDCLRSKSAEELLDATRKLLLFSYSPFLPF 274
Query: 242 SPITDSFMGAGAVVPDHPLALPP----NPVNIILGYNSYEGNMIASMVCFNEFRLARDME 297
P+ D G +PD P L V +I+G EG A+M +
Sbjct: 275 GPVVD-----GDFIPDDPEELIKEGKFAKVPLIIGVTKDEGGYFAAM----------LLN 319
Query: 298 VDLPRRLALLTNLQDQVKYSEKAKV---ADRLFEFYLNSQNISKDNVYKFADLGTDILFG 354
D + + + Y AD++ E Y + S ++ +D+ TD+LF
Sbjct: 320 FDAKLIIETNDRWLELLPYLLFYADDALADKVLEKYPGDVDDSVESRKNLSDMLTDLLFK 379
Query: 355 HPS-FKAALN-YYKKVPLYFYLYDITPRITLLTMFGNCTHLRGPSHGEEIVYFFNDIIPN 412
P+ + A + P+Y Y++D L G HG+EI + F + +
Sbjct: 380 CPARYFLAQHRKAGGSPVYAYVFDHRSS--LSVGRWPPW--LGTVHGDEIFFVFGNPLLK 435
Query: 413 FELTPEEHKLSHRLLDLWTSFASTGVPS-----DTWTPVASDRIEYLHMTNDGFKMAR 465
L EE KLS ++ W +FA TG P+ W S+ +YL + +G ++ +
Sbjct: 436 EGLREEEEKLSRTMMKYWANFAKTGNPNTEGNLVVWPAYTSESEKYLDINIEGTEIKQ 493
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 236 bits (604), Expect = 5e-72
Identities = 130/455 (28%), Positives = 190/455 (41%), Gaps = 61/455 (13%)
Query: 11 PQPHPGWSDTKNATEHGNECPQ-RNYFNHQL--IGSDNCLFLNVYTPKIDPNAKLPVMVY 67
P P WS ++AT+ G CPQ N GS++CL+LN++ P+ P KLPVMVY
Sbjct: 41 PVPPEPWSGVRDATQFGPACPQPFNRMGSGEDFTGSEDCLYLNIWAPE-VPAEKLPVMVY 99
Query: 68 IHGGAFKGGN---TRFLKEKFIMDKNIVYVAIQYRIGILGFMSFLDDVIP----GNFGLK 120
IHGG + G+ + ++V V++ YR+G LGF+ N GL
Sbjct: 100 IHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASNLGLL 159
Query: 121 DQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPLAKGLFHNAIIQGGTATS 180
DQI ALKWV+DNI FGGDP VT+FG SAGAA++ L+ P AKGLFH AI G A+
Sbjct: 160 DQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAASR 219
Query: 181 PWAYIPQTVAKQRAEAVATLLGCPSKPTTEALACMRDIPSDNFIIVTDKFLEWDLSPLGP 240
+ A+++A A A LG P L +R + +++ + + G
Sbjct: 220 V---TSREEAREKAAAFARALGIPE----ATLDKLRALSAEDLVKARLPLI---GRTFGA 269
Query: 241 FSPITDSFMGAGAVVPDHPLAL----PPNPVNIILGYNSYEGNMIASMVCFNEFRLARDM 296
+++P PL + V +++G N EG++ + +
Sbjct: 270 VPYGPV---LGDSLLPRDPLEAIAQGRSHGVPLMIGTNHDEGSLFIN----FNPDSPPGL 322
Query: 297 EVDLPRRLALLT--NLQDQVKYSEKAKVADRLFEFYLNSQNISKDNVYKFADLGTDILFG 354
+ RL N + A F L TD LF
Sbjct: 323 RDKVAARLPGKELINAERVPAAYPGVSAAAAA-----------------FGALVTDRLFK 365
Query: 355 HPSFKAALNYYKKVPLYFYLYDITPRITLLTMFGNCTHLRGPSHGEEIVYFFNDIIPNFE 414
PS + A P + Y +D P + FG H E+ F +++
Sbjct: 366 APSIRLAQAQSAGAPTWLYRFDYAPDTVRVPGFGAP-------HATELSLVFGNLVALGS 418
Query: 415 L---TPEEHKLSHRLLDLWTSFASTGVPSDTWTPV 446
KLS ++ D W +FA TG P+ P
Sbjct: 419 AAQTARATAKLSRQMQDAWANFARTGSPNGLGLPD 453
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 63.4 bits (154), Expect = 5e-11
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 20/109 (18%)
Query: 51 VYTPKIDPNAKLPVMVYIHGGAFKGGNTRFLKE---KFIMDKNIVYVAIQYRIGILG--- 104
VY P A PV++Y+HGG + G+ R + V V++ YR L
Sbjct: 68 VYRPDRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYR---LAPEH 124
Query: 105 -FMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGA 152
F + L+D A +W++ N A G DPSR+ + G SAG
Sbjct: 125 PFPAALEDAYA----------AYRWLRANAAELGIDPSRIAVAGDSAGG 163
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 49.1 bits (117), Expect = 4e-06
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 51 VYTPKI-DPNAKLPVMVYIHGGAFKG-GNTRFLKEKFIMDKNIVYVAIQYRIGILGF-MS 107
+Y P DP K P++VYIHGG G + + + + +A YR G G+
Sbjct: 382 LYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYR-GSTGYGRE 440
Query: 108 FLDDVIPGNFG---LKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGA 152
F D + G++G L+D I A+ + DP R+ I GGS G
Sbjct: 441 FADAIR-GDWGGVDLEDLIAAVDALVK---LPLVDPERIGITGGSYGG 484
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 47.2 bits (113), Expect = 4e-06
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 23/101 (22%)
Query: 65 MVYIHGGAFKGGNT----RFLKEKFIMDK-NIVYVAIQYRIGILGFMSFL--DDVIPGNF 117
+VY HGG F G+ R + + V V++ YR L + P
Sbjct: 1 LVYFHGGGFVLGSADTHDRLCRR--LAAAAGAVVVSVDYR---------LAPEHPFPA-- 47
Query: 118 GLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAG---AAAV 155
++D AL+W+ ++ G DPSR+ + G SAG AAAV
Sbjct: 48 AIEDAYAALRWLAEHAWELGADPSRIAVAGDSAGGNLAAAV 88
>gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.
Length = 212
Score = 40.7 bits (96), Expect = 6e-04
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 88 DKNIVYVAIQYRIGILGFMS--FLDDVI--PGNFGLKDQIFALKWVQDNIAHFGGDPSRV 143
D+ V R G + D G D I A +++ IA DP R+
Sbjct: 12 DRGYVVAVANGRGS--GGYGRAWHDAGKGDLGQNEFDDFIAAAEYL---IAQGYVDPDRL 66
Query: 144 TIFGGSAG 151
I+GGS G
Sbjct: 67 AIWGGSYG 74
>gnl|CDD|151183 pfam10686, DUF2493, Protein of unknown function (DUF2493).
Members of this family are all Proteobacteria. The
function is not known.
Length = 71
Score = 28.8 bits (65), Expect = 1.2
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 14/46 (30%)
Query: 33 RNYFNHQLIGS--DNCLFLNVYTPKIDPNAKLPVMVYIHGGAFKGG 76
R++ +H+LI D A+ P MV +HGGA KG
Sbjct: 12 RDFNDHRLIWDALDKVH------------ARHPDMVLLHGGAPKGA 45
>gnl|CDD|215786 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central
domain. The central domain of TPP enzymes contains a
2-fold Rossman fold.
Length = 136
Score = 29.1 bits (66), Expect = 2.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 243 PITDSFMGAGAVVPDHPLAL 262
P+ + MG GA DHPL L
Sbjct: 41 PVVTTLMGKGAFPEDHPLYL 60
>gnl|CDD|217702 pfam03734, YkuD, L,D-transpeptidase catalytic domain. This family
of proteins are found in a range of bacteria. It has
been shown that this domain can act as an
L,D-transpeptidase that gives rise to an alternative
pathway for peptidoglycan cross-linking. This gives
bacteria resistance to beta-lactam antibiotics that
inhibit PBPs which usually carry out the cross-linking
reaction. The conserved region contains a conserved
histidine and cysteine, with the cysteine thought to be
an active site residue. Several members of this family
contain peptidoglycan binding domains. The molecular
structure of YkuD protein shows this domain has a novel
tertiary fold consisting of a beta-sandwich with two
mixed sheets, one containing five strands and the other,
six strands. The two beta-sheets form a cradle capped by
an alpha-helix. This family was formerly called the
ErfK/YbiS/YcfS/YnhG family, but is now named after the
first protein of known structure.
Length = 89
Score = 28.1 bits (63), Expect = 2.8
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 428 DLWTSFASTGVPSDTWTPVASDRIEYLHMTND 459
+ T S G D TP + I Y+H T
Sbjct: 22 GVRTYPVSVGRG-DRPTPTGTFTIIYIHGTGT 52
>gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3. These atypical SDR
family members of unknown function have a glycine-rich
NAD(P)-binding motif consensus that is very similar to
the extended SDRs, GXXGXXG. Generally, this group has
poor conservation of the active site tetrad, However,
individual sequences do contain matches to the YXXXK
active site motif, and generally Tyr or Asn in place of
the upstream Ser found in most SDRs. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Atypical SDRs include
biliverdin IX beta reductase (BVR-B,aka flavin
reductase), NMRa (a negative transcriptional regulator
of various fungi), progesterone 5-beta-reductase like
proteins, phenylcoumaran benzylic ether and
pinoresinol-lariciresinol reductases, phenylpropene
synthases, eugenol synthase, triphenylmethane reductase,
isoflavone reductases, and others. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold, an NAD(P)(H)-binding region, and a structurally
diverse C-terminal region. Sequence identity between
different SDR enzymes is typically in the 15-30% range;
they catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. In addition to the
Rossmann fold core region typical of all SDRs, extended
SDRs have a less conserved C-terminal extension of
approximately 100 amino acids, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 302
Score = 29.6 bits (67), Expect = 3.2
Identities = 27/105 (25%), Positives = 34/105 (32%), Gaps = 30/105 (28%)
Query: 161 SPLAKGLFHNAIIQGGTATSP--------WAYIPQTVAKQRAEAVATLL----------- 201
S L LF AI+QG TA P W Y+P A A+ TL
Sbjct: 165 SWLGAALF--AILQGKTAVFPGNLDTPHEWTYLPDV-----ARALVTLAEEPDAFGEAWH 217
Query: 202 --GCPSKPTTEALACMRDIPSDNFIIVTDKFLEWDLSPLGPFSPI 244
G + T E +A +W L G F P+
Sbjct: 218 LPGAGAITTRELIAIAARAAGRP--PKVRVIPKWTLRLAGLFDPL 260
>gnl|CDD|234277 TIGR03604, TOMM_cyclo_SagD, thiazole/oxazole-forming peptide
maturase, SagD family component. Members of this
protein family include enzymes related to SagD,
previously referred to as a scaffold or docking protein
involved in the biosynthesis of streptolysin S in
Streptococcus pyogenes from the protoxin polypeptide
(product of the sagA gene). Newer evidence describes an
enzymatic activity, an ATP-dependent cyclodehydration
reaction, previously ascribed to the SagC component.
This protein family serves as a marker for widely
distributed prokaryotic systems for making a general
class of heterocycle-containing bacteriocins.
Length = 377
Score = 29.6 bits (67), Expect = 3.8
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 288 NEFRLARDMEVDLPRRLALLTNLQDQVKYSEKAKVADRLFEFYLNSQNISKDNVYKFADL 347
+ R R+ ++ + L+ +L+D V + +R F+F L S+
Sbjct: 234 DNTRSDREYLANMIKDYRLVRDLEDHVLLYALPRAQER-FDFLLESELPLSTLEDAERPD 292
Query: 348 GTDILFGHPSFKAALNYYKKVPLYFYLYDITPR 380
G D L + L+ K L + DITP
Sbjct: 293 GLDDL------EELLDRLKDAGLEAIVVDITPP 319
>gnl|CDD|184632 PRK14336, PRK14336, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 418
Score = 29.1 bits (65), Expect = 5.7
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 293 ARDMEVDLP-----RRLALLTNLQDQVKYSEKAKVADRLFEFYLNSQNISKDNVYKFADL 347
ARDM D+P RRL L+ +LQ + A + D E + +K ++ L
Sbjct: 322 ARDMADDVPVIEKKRRLKLIEDLQKETVGKANAALMDTFAEVLVEGLQKNK---WQGRTL 378
Query: 348 GTDILF 353
G ++F
Sbjct: 379 GGKLVF 384
>gnl|CDD|215567 PLN03087, PLN03087, BODYGUARD 1 domain containing hydrolase;
Provisional.
Length = 481
Score = 29.0 bits (65), Expect = 6.5
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 7 GLQDPQPHPGWSDTKNATEHGNECPQRNYFNHQLIGSDNCLFLNVYTPKIDPNAKLPVMV 66
G Q P P WSD C L S+ LF++V PK D AK V +
Sbjct: 159 GGQQLHPAPRWSDC-----DCKFC------TSWLSSSNESLFVHVQQPK-DNKAKEDV-L 205
Query: 67 YIHG 70
+IHG
Sbjct: 206 FIHG 209
>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR
repeats [General function prediction only].
Length = 484
Score = 28.9 bits (65), Expect = 6.9
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 338 KDNVYKFADLGTDILFGHPSFKAALNYYKKV 368
DN Y + +L DIL K A+ KK
Sbjct: 337 PDNPY-YLELAGDILLEANKAKEAIERLKKA 366
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 27.7 bits (62), Expect = 8.0
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 20/92 (21%)
Query: 64 VMVYIHGGAFKGGNTRFLKEKFIMDKNIVYVAIQYRIGILGFMSFLDDVIPGNFGLKDQI 123
++V +HG L + + VA+ Y PG+
Sbjct: 1 LVVLLHGAGGDPEAYAPLAR-ALASRGYNVVAVDY---------------PGHGASLGAP 44
Query: 124 FALKWVQDNIAHFGGDPSRVTIFGGSAGAAAV 155
A +A DP R+ + G S G
Sbjct: 45 DAEAV----LADAPLDPERIVLVGHSLGGGVA 72
>gnl|CDD|220268 pfam09496, CENP-O, Cenp-O kinetochore centromere component. This
eukaryotic protein is a component of the inner
kinetochore subcomplex of the centromere. It has been
shown to be involved in chromosome segregation via
regulation of the spindle in both yeast and human.
Length = 88
Score = 26.8 bits (60), Expect = 8.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 324 DRLFEFYLNSQNISKDNVYKFADL 347
+ L + YL Q SK ++ KFA
Sbjct: 47 EELEKEYLPGQINSKQDLRKFARE 70
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 28.4 bits (64), Expect = 9.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 243 PITDSFMGAGAVVPDHPLAL 262
P+ + MG GAV DHPL+L
Sbjct: 230 PVVTTLMGKGAVPEDHPLSL 249
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.140 0.435
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,419,598
Number of extensions: 2672544
Number of successful extensions: 2186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2160
Number of HSP's successfully gapped: 26
Length of query: 494
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 393
Effective length of database: 6,457,848
Effective search space: 2537934264
Effective search space used: 2537934264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)