RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy600
(494 letters)
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 456 bits (1175), Expect = e-157
Identities = 112/505 (22%), Positives = 207/505 (40%), Gaps = 48/505 (9%)
Query: 9 QDPQPHPGWSDTKNATEHGNECPQRNYFNHQLI----GSDNCLFLNVYTPKI-------- 56
++ QP W D +AT+ G C Q + +++ S+ C+ N++ P
Sbjct: 49 KELQPLEPWQDELDATQEGPVCQQTDVLYGRIMRPRGMSEACIHANIHVPYYALPRDAAD 108
Query: 57 -DPNAKLPVMVYIHGGAFKGG--NTRFLKEKFIMDKNIVYVAIQYRIGILGFMSFLDDVI 113
+ A LPV+V+IHGG F G ++ ++++ K+++ + YR+ + GF+S +
Sbjct: 109 KNRFAGLPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYGFLSLNSTSV 168
Query: 114 PGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPLAKGLFHNAII 173
PGN GL+D + LKWVQ N FGG P VT+ G SAGAAA L +S A GLF AI+
Sbjct: 169 PGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAIL 228
Query: 174 QGGTATSPWAYIPQTVAKQRAEAVATLLGCPSKPTTEALACMRDIPSDNFIIVTDKFLEW 233
GT++S + A+ + T +G + E + ++P++ LE
Sbjct: 229 MSGTSSSAFFTTNPVFAQYINKLFVTNIGITATDPEEIHQKLIEMPAEKLNEANRFLLEQ 288
Query: 234 DLSPLGPFSPITDS-FMGAGAVVPDHPLAL----PPNPVNIILGYNSYEGNMIASMVCFN 288
L F P+ +S G ++ P L + +I+G+ E +
Sbjct: 289 F--GLTTFFPVVESPINGVTTILDGDPEQLIAKGRGKHIPLIIGFTDAECEIFRRQFEQI 346
Query: 289 EF--RLARDMEVDLPRRLALLTNLQDQVKYSEKAKVADRLFEFYLNSQNISKDNVYKFAD 346
+ ++ + + +P + + A++ + E Y ++ + +
Sbjct: 347 DIVSKIKENPGILVPLSVLFSSAPDTV------AEITKAMHEKYFK----KSVDMEGYIE 396
Query: 347 LGTDILFGHPSFKAALNY--YKKVPLYFYLYDITPRITLLTMFGNCTHLRGPSHGEEIVY 404
L TD F +P+ A+ P+Y Y + ++ + + G H E++ Y
Sbjct: 397 LCTDSYFMYPAISLAIKRARSNGAPVYLYQFSFDGDYSVFREVNH-LNFEGAGHIEDLTY 455
Query: 405 FFN-----DIIPNFELTPEEHKLSHRLLDLWTSFASTGVP---SDTWTPVASDRIEYLHM 456
F +F ++ + + + T+F P + W V +D + Y +
Sbjct: 456 VFRTNSMLGGHASFPPHDKDDHMKYWMTSFITNFMKYSNPVTDAKLWPEVRADNLRYQDI 515
Query: 457 TND---GFKMARGLYEDRMRFVDTL 478
D + F D++
Sbjct: 516 DTPDVYQNVKPHSEQRDMLDFFDSI 540
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 457 bits (1178), Expect = e-157
Identities = 134/497 (26%), Positives = 205/497 (41%), Gaps = 45/497 (9%)
Query: 7 GLQDPQPHPGWSDTKNATEHGNECPQRNYFNHQLIGSDNCLFLNVYTPKIDPNA--KLPV 64
L+ P+ HPGW T A C Q G+++CL+LN++ P+ LPV
Sbjct: 41 ALEKPERHPGWQGTLKAKSFKKRCLQATLTQDSTYGNEDCLYLNIWVPQGRKEVSHDLPV 100
Query: 65 MVYIHGGAFK--GGNTRFLKEKFIMD-------KNIVYVAIQYRIGILGFMSFLDDVIPG 115
M++I+GGAF ++ D N++ V YR+G LGF+S D +PG
Sbjct: 101 MIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTGDSNLPG 160
Query: 116 NFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPLAKGLFHNAIIQG 175
N+GL DQ A+ WV+ NI FGGDP ++T+FG SAG A+V +SP KGL AI Q
Sbjct: 161 NYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQS 220
Query: 176 GTATSPWAYIPQTVAKQRAEAVATLLGCPSKPTTEALACMRDIPSDNFIIVTDKFLEWDL 235
G PWA A+ +A +GCP T++ C++ + L
Sbjct: 221 GVGLCPWAIQQD--PLFWAKRIAEKVGCPVDDTSKMAGCLKITDPRALTLAYKLPLGSTE 278
Query: 236 SPLG---PFSPITDSFMGAGAVVPDHPLALPPN--PVNIILGYNSYEGNMIASMVCFNEF 290
P F P+ D G +PD P+ L N V+ I G N +G++ M
Sbjct: 279 YPKLHYLSFVPVID-----GDFIPDDPVNLYANAADVDYIAGTNDMDGHLFVGMDVPAIN 333
Query: 291 RLARDMEVDLPRRLALLTNLQDQVKYSEKAKVADRLFEFYLNSQNISKDNVYKFADLGTD 350
+D+ + +L + A+ ++ + + DL TD
Sbjct: 334 SNKQDVTEEDFYKLVSGLTVTKG---LRGAQATYEVYTEPWAQDSSQETRKKTMVDLETD 390
Query: 351 ILFGHPSFKAA---LNYYKKVPLYFYLYDITPRITLLTMFGNCTHLRGPSHGEEIVYFF- 406
ILF P+ A ++ K Y YL+ R G H +++ Y F
Sbjct: 391 ILFLIPTKIAVAQHKSHAKSANTYTYLFSQPSR------MPIYPKWMGADHADDLQYVFG 444
Query: 407 NDIIPNFELTPEEHKLSHRLLDLWTSFASTGVPSD-------TWTPVASDRIEYLHM--T 457
++ +S ++ WT+FA TG P+ W P + YL +
Sbjct: 445 KPFATPLGYRAQDRTVSKAMIAYWTNFARTGDPNTGHSTVPANWDPYTLEDDNYLEINKQ 504
Query: 458 NDGFKMARGLYEDRMRF 474
D M L + ++F
Sbjct: 505 MDSNSMKLHLRTNYLQF 521
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 436 bits (1123), Expect = e-149
Identities = 144/492 (29%), Positives = 209/492 (42%), Gaps = 38/492 (7%)
Query: 9 QDPQPHPGWSDTKNATEHGNECPQRNYF-------------NHQLIGSDNCLFLNVYTPK 55
PQP WS KNAT + C Q N L S++CL+LN+YTP
Sbjct: 48 TPPQPAEPWSFVKNATSYPPMCTQDPKAGQLLSELFTNRKENIPLKLSEDCLYLNIYTPA 107
Query: 56 -IDPNAKLPVMVYIHGGAFK-GGNTRFLKEKFIMDKNIVYVAIQYRIGILGFMSFLDDVI 113
+ +LPVMV+IHGG G + + +N+V V IQYR+GI GF S D+
Sbjct: 108 DLTKKNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWGFFSTGDEHS 167
Query: 114 PGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPLAKGLFHNAII 173
GN+G DQ+ AL+WVQDNIA FGG+P VTIFG SAG +V LV+SPLAK LFH AI
Sbjct: 168 RGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAIS 227
Query: 174 QGGTATSPWAYIPQTVAKQRAEAVATLLGCPSKPTTEALACMRDIPSDNFIIVTDKFLEW 233
+ G A + + + K AE +A GC + + + C+R + + T K
Sbjct: 228 ESGVALTSVL-VKKGDVKPLAEQIAITAGCKTTTSAVMVHCLRQKTEEELLETTLKMKFL 286
Query: 234 DLSPLGPFSPITDSF--MGAGAVVPDHPLALPP----NPVNIILGYNSYEGNMIASMVCF 287
L G + G ++ P L + V ++G N E + M+
Sbjct: 287 SLDLQGDPRESQPLLGTVIDGMLLLKTPEELQAERNFHTVPYMVGINKQEFGWLIPMLMS 346
Query: 288 NEFRLARDMEVDLPRRLALLTNLQDQVKYSEKAKVADRLFEFYLNSQNISKDNVYKFADL 347
E L ++ A+ + ++ E YL + + F DL
Sbjct: 347 YPLS-----EGQLDQKTAMSLLWKSYPLVCIAKELIPEATEKYLGGTDDTVKKKDLFLDL 401
Query: 348 GTDILFGHPSFKAALNYYK-KVPLYFYLYDITPRITLLTMFGNCTHLRGPSHGEEIVYFF 406
D++FG PS A N+ P Y Y + P + HG+E+ F
Sbjct: 402 IADVMFGVPSVIVARNHRDAGAPTYMYEFQYRPSFSSDMKPKTV----IGDHGDELFSVF 457
Query: 407 NDIIPNFELTPEEHKLSHRLLDLWTSFASTGVPSD----TWTPVASDRIEYLHMTNDGFK 462
+ EE +LS ++ W +FA G P+ W YL + +
Sbjct: 458 GAPFLKEGASEEEIRLSKMVMKFWANFARNGNPNGEGLPHWPEYNQKE-GYLQI-GANTQ 515
Query: 463 MARGLYEDRMRF 474
A+ L + + F
Sbjct: 516 AAQKLKDKEVAF 527
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 430 bits (1107), Expect = e-147
Identities = 131/504 (25%), Positives = 202/504 (40%), Gaps = 43/504 (8%)
Query: 9 QDPQPHPGWSDTKNATEHGNECPQRNY-----------FNHQLIGSDNCLFLNVYTPKID 57
+ P+P WS NA+ + N C Q +N S++CL+LN++ P
Sbjct: 46 RRPEPKKPWSGVWNASTYPNNCQQYVDEQFPGFSGSEMWNPNREMSEDCLYLNIWVPSPR 105
Query: 58 PNAKLPVMVYIHGGAFKGG---NTRFLKEKFIMDKNIVYVAIQYRIGILGFMSFLDD-VI 113
P VMV+I+GG F G + + + +V V++ YR+G GF++
Sbjct: 106 PK-STTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQEA 164
Query: 114 PGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPLAKGLFHNAII 173
PGN GL DQ AL+WV DNI FGGDP VTIFG SAG A+V ++SP ++ LF AI+
Sbjct: 165 PGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAIL 224
Query: 174 QGGTATSPWAYIPQTVAKQRAEAVATLLGCPSKPTTEALACMRDIPSDNFIIVTDKFLEW 233
Q G+ PWA + ++RA + L C E + C+R+ I V L +
Sbjct: 225 QSGSPNCPWASVSVAEGRRRAVELGRNLNCNLNSDEELIHCLREKKPQELIDVEWNVLPF 284
Query: 234 DLSPLGPFSPITDSFMGAGAVVPDHPLAL----PPNPVNIILGYNSYEGNMIASMVCFNE 289
D F P+ D G P ++ I+LG N EG+
Sbjct: 285 DSIFRFSFVPVID-----GEFFPTSLESMLNSGNFKKTQILLGVNKDEGSFFLLYG-APG 338
Query: 290 FRLARDMEVDLPRRLALLTNLQDQVKYSEKAKVADRLFEFYLNSQNISKDNVYKFADLGT 349
F + ++ ++ + V + ++ N N D+
Sbjct: 339 FSKDSESKISREDFMSGVKLSVPHANDLGLDAVTLQYTDWM--DDNNGIKNRDGLDDIVG 396
Query: 350 DILFGHPSFKAALNYYKK-VPLYFYLYDITPRITLLTMFGNCTHLRGPSHGEEIVYFFN- 407
D P Y K Y Y ++ G HG EI + F
Sbjct: 397 DHNVICPLMHFVNKYTKFGNGTYLYFFNHRAS------NLVWPEWMGVIHGYEIEFVFGL 450
Query: 408 DIIPNFELTPEEHKLSHRLLDLWTSFASTGVPSD------TWTPVASDRIEYLHMTNDGF 461
++ T EE LS R++ W +FA TG P++ W + +++ + +
Sbjct: 451 PLVKELNYTAEEEALSRRIMHYWATFAKTGNPNEPHSQESKWPLFTTKEQKFIDLNTEPM 510
Query: 462 KMARGLYEDRMRFVD-TLPLLNNQ 484
K+ + L F + LP L N
Sbjct: 511 KVHQRLRVQMCVFWNQFLPKLLNA 534
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 425 bits (1094), Expect = e-145
Identities = 130/501 (25%), Positives = 206/501 (41%), Gaps = 43/501 (8%)
Query: 9 QDPQPHPGWSDTKNATEHGNECPQRNY-----------FNHQLIGSDNCLFLNVYTPKID 57
+ PQ WSD NAT++ N C Q +N S++CL+LNV+ P
Sbjct: 44 KKPQSLTKWSDIWNATKYANSCCQNIDQSFPGFHGSEMWNPNTDLSEDCLYLNVWIPAPK 103
Query: 58 PNAKLPVMVYIHGGAFKGGNTRFLK---EKFIMDKNIVYVAIQYRIGILGFMSF-LDDVI 113
P V+++I+GG F+ G + + + ++ V++ YR+G LGF++ +
Sbjct: 104 P-KNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALPGNPEA 162
Query: 114 PGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPLAKGLFHNAII 173
PGN GL DQ AL+WVQ NIA FGG+P VT+FG SAGAA+V ++SP + LF AI+
Sbjct: 163 PGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAIL 222
Query: 174 QGGTATSPWAYIPQTVAKQRAEAVATLLGCPSKPTTEALACMRDIPSDNFIIVTDKFLEW 233
Q G+ +PWA A+ R +A L GC + TE + C+R+ ++ + +
Sbjct: 223 QSGSFNAPWAVTSLYEARNRTLNLAKLTGCSRENETEIIKCLRNKDPQEILLNEAFVVPY 282
Query: 234 DLSPLGPFSPITDSFMGAGAVVPDHPLAL----PPNPVNIILGYNSYEGNMIASMVCFNE 289
F P D G + D P L I++G N EG
Sbjct: 283 GTPLSVNFGPTVD-----GDFLTDMPDILLELGQFKKTQILVGVNKDEGTAFLVYG-APG 336
Query: 290 FRLARDMEVDLPRRLALLTNLQDQVKYSEKAKVADRLFEFYLNSQNISKDNVYKFADLGT 349
F + + L V SE K + ++ D+
Sbjct: 337 FSKDNNSIITRKEFQEGLKIFFPGV--SEFGKESILFHYTDWVDDQRPENYREALGDVVG 394
Query: 350 DILFGHPSFKAALNYYKK-VPLYFYLYDITPRITLLTMFGNCTHLRGPSHGEEIVYFFND 408
D F P+ + + + +FY ++ + G HG EI + F
Sbjct: 395 DYNFICPALEFTKKFSEWGNNAFFYYFEHRSS---KLPWPEWM---GVMHGYEIEFVFGL 448
Query: 409 -IIPNFELTPEEHKLSHRLLDLWTSFASTGVPSD------TWTPVASDRIEYLHMTNDGF 461
+ + T E LS ++ W +FA G P + +W S +YL + +
Sbjct: 449 PLERRDQYTKAEEILSRSIVKRWANFAKYGNPQETQNQSTSWPVFKSTEQKYLTLNTEST 508
Query: 462 KMARGLYEDRMRFVD-TLPLL 481
++ L + RF P +
Sbjct: 509 RIMTKLRAQQCRFWTSFFPKV 529
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 419 bits (1080), Expect = e-142
Identities = 141/510 (27%), Positives = 221/510 (43%), Gaps = 51/510 (10%)
Query: 9 QDPQPHPGWSDTKNATEHGNECPQRNY-----------FNHQLIGSDNCLFLNVYTPKID 57
P+P WS +AT N C Q +N S++CL+LNV+TP
Sbjct: 48 MPPEPKRPWSGVLDATTFQNVCYQYVDTLYPGFEGTEMWNPNRELSEDCLYLNVWTPYPR 107
Query: 58 PNAKLPVMVYIHGGAFKGGNTRFLK---EKFIMDKNIVYVAIQYRIGILGFMSFLDD-VI 113
P + PV+++I+GG F G + V V++ YR+G GF++
Sbjct: 108 PASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALPGSREA 167
Query: 114 PGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPLAKGLFHNAII 173
PGN GL DQ AL+WVQ+NIA FGGDP VT+FG SAGAA+V ++S ++ LFH A++
Sbjct: 168 PGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVL 227
Query: 174 QGGTATSPWAYIPQTVAKQRAEAVATLLGCPSKP----TTEALACMRDIPSDNFIIVTDK 229
Q GT PWA + A++RA +A L+GCP TE +AC+R P+ + +
Sbjct: 228 QSGTPNGPWATVSAGEARRRATLLARLVGCPPGGAGGNDTELIACLRTRPAQDLVDHEWH 287
Query: 230 FLEWDLSPLGPFSPITDSFMGAGAVVPDHPLAL----PPNPVNIILGYNSYEGNMIASMV 285
L + F P+ D G + D P AL + +++G EG+
Sbjct: 288 VLPQESIFRFSFVPVVD-----GDFLSDTPEALINTGDFQDLQVLVGVVKDEGSYFLVYG 342
Query: 286 CFNEFRLARDMEVDLPRRLALLTNLQDQVKYSEKAKVADRLFEFYLNSQNISKDNVYK-- 343
F + + R L ++ V + A+ + Y + + +
Sbjct: 343 -VPGFSKDNESLIS---RAQFLAGVRIGVPQASDL-AAEAVVLHYTDWLHPEDPTHLRDA 397
Query: 344 FADLGTDILFGHPSFKAALNYYKK-VPLYFYLYDITPRITLLTMFGNCTHLRGPSHGEEI 402
+ + D P + A + +Y Y+++ ++ G HG EI
Sbjct: 398 MSAVVGDHNVVCPVAQLAGRLAAQGARVYAYIFEHRASTLTWPLW------MGVPHGYEI 451
Query: 403 VYFF-NDIIPNFELTPEEHKLSHRLLDLWTSFASTGVPSD-------TWTPVASDRIEYL 454
+ F + P+ T EE + RL+ WT+FA TG P+D W P + +Y+
Sbjct: 452 EFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYTTAAQQYV 511
Query: 455 HMTNDGFKMARGLYEDRMRF-VDTLPLLNN 483
+ ++ RGL F LP L +
Sbjct: 512 SLNLKPLEVRRGLRAQTCAFWNRFLPKLLS 541
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 403 bits (1036), Expect = e-135
Identities = 137/542 (25%), Positives = 224/542 (41%), Gaps = 83/542 (15%)
Query: 9 QDPQPHPGWSDTKNATEHGNECPQRNYF--------------------NHQLIGSDNCLF 48
Q P+P WSD +NAT+ CPQ ++ S++CL+
Sbjct: 54 QPPEPPSPWSDIRNATQFAPVCPQNIIDGRLPEVMLPVWFTNNLDVVSSYVQDQSEDCLY 113
Query: 49 LNVYTPKIDP----NAKLPVMVYIHGGAFK-GGNTRFLKEKFIMDKNIVYVAIQYRIGIL 103
LN+Y P D PVMVYIHGG++ G + N++ + + YR+G+L
Sbjct: 114 LNIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGNLYDGSVLASYGNVIVITVNYRLGVL 173
Query: 104 GFMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPL 163
GF+S D GN+GL D I AL+W +NI FGGDP R+T+FG AG + V+ L +S
Sbjct: 174 GFLSTGDQAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHY 233
Query: 164 A-KGLFHNAIIQGGTATSPWAYIPQTVAKQRAEAVATLLGCPSKPTTEALACMRDIPSDN 222
+ KGLF AI Q GTA S WA Q + A +AT +GC T E + C++ P
Sbjct: 234 SEKGLFQRAIAQSGTALSSWAVSFQ--PAKYARILATKVGCNVSDTVELVECLQKKPYKE 291
Query: 223 FIIVTDKFLEWDLSPLGPFSPITDSFMGAGAVVPDHPLAL----PPNPVNIILGYNSYEG 278
+ + + + F P+ D G V+PD P L +I+LG N EG
Sbjct: 292 LVDQDVQPARYHI----AFGPVID-----GDVIPDDPQILMEQGEFLNYDIMLGVNQGEG 342
Query: 279 NMIASMVCFNEFRLAR-DMEVDLPRRLALLTNLQDQVKYSEKAKVADRLFEFYLN--SQN 335
+ ++ ++ D + + + L + K + + + Y + ++
Sbjct: 343 LKFVENIVDSDDGVSASDFDFAVSNFVDNLYGYPEG-----KDVLRETIKFMYTDWADRH 397
Query: 336 ISKDNVYKFADLGTDILFGHPSFKAALNYYK-KVPLYFYLYDITPRITLLTMFGNCTHLR 394
+ L TD + P+ A + P YFY + + + +
Sbjct: 398 NPETRRKTLLALFTDHQWVAPAVATADLHSNFGSPTYFYAFYHHCQTDQVPAW------A 451
Query: 395 GPSHGEEIVYFF------NDIIPNFELTPEEHKLSHRLLDLWTSFASTGVPSD------- 441
+HG+E+ Y + + + LS ++ WT+FA TG P+
Sbjct: 452 DAAHGDEVPYVLGIPMIGPTELFPCNFSKNDVMLSAVVMTYWTNFAKTGDPNQPVPQDTK 511
Query: 442 ------------TWTPVASDRIEYLHMTNDGFKMARGLYEDRMRF-VDTLPLLNNQYNLR 488
WT + YLH+ ++ +++ ++ +P L+N +
Sbjct: 512 FIHTKPNRFEEVAWTRYSQKDQLYLHI-GLKPRVKEHYRANKVNLWLELVPHLHNLNDHH 570
Query: 489 HE 490
H
Sbjct: 571 HH 572
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 395 bits (1016), Expect = e-132
Identities = 125/542 (23%), Positives = 219/542 (40%), Gaps = 85/542 (15%)
Query: 11 PQPHPGWSDTKNATEHGNECPQRNY-----------FNHQLIGSDNCLFLNVYTPK---- 55
P P W +AT C Q Y +N S++CL++NV+ P
Sbjct: 47 PVPAEPWHGVLDATGLSATCVQERYEYFPGFSGEEIWNPNTNVSEDCLYINVWAPAKARL 106
Query: 56 ----------------------------IDPNAKLPVMVYIHGGAFKGGNTRFLK---EK 84
+ LP++++I+GG F G+ +
Sbjct: 107 RHGRGANGGEHPNGKQADTDHLIHNGNPQNTTNGLPILIWIYGGGFMTGSATLDIYNADI 166
Query: 85 FIMDKNIVYVAIQYRIGILGFMSF-------LDDVIPGNFGLKDQIFALKWVQDNIAHFG 137
N++ + QYR+G GF+ + PGN GL DQ A++W++DN FG
Sbjct: 167 MAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAIRWLKDNAHAFG 226
Query: 138 GDPSRVTIFGGSAGAAAVDYLVISPLAKGLFHNAIIQGGTATSPWAYIPQTVAKQRAEAV 197
G+P +T+FG SAG+++V+ ++SP+ +GL ++Q GT +PW+++ A + +A+
Sbjct: 227 GNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMNAPWSHMTSEKAVEIGKAL 286
Query: 198 ATLLGCPSKP----TTEALACMRDIPSDNFIIVTDKFLEWDLSPLGPFSPITDSFMGAGA 253
C + ++CMR + + I ++ + P +P D GA
Sbjct: 287 INDCNCNASMLKTNPAHVMSCMRSVDAKT--ISVQQWNSYSGILSFPSAPTID-----GA 339
Query: 254 VVPDHPLAL----PPNPVNIILGYNSYEGNMIASMVCFNEFRLARDMEVDLPRRLALLTN 309
+P P+ L +I++G EG + F +D LPR L
Sbjct: 340 FLPADPMTLMKTADLKDYDILMGNVRDEGTYFLLYDFIDYFD--KDDATALPRDK-YLEI 396
Query: 310 LQDQVKYSEKAKVADRLFEFYLNSQNISKDNVYKFADLGTDILFGHPSFKAALNYYKK-V 368
+ + + +A+ +F++ N N + D F P+ + A ++
Sbjct: 397 MNNIFGKATQAEREAIIFQYTSWEGNPGYQNQQQIGRAVGDHFFTCPTNEYAQALAERGA 456
Query: 369 PLYFYLYDITPRITLLTMFGNCTHLRGPSHGEEIVYFFND-IIPNFELTPEEHKLSHRLL 427
+++Y + +L + G HG+EI YFF + + + P E +L R+L
Sbjct: 457 SVHYYYFTHRTSTSLWGEW------MGVLHGDEIEYFFGQPLNNSLQYRPVERELGKRML 510
Query: 428 DLWTSFASTGVPS---DTWTPVASDRIEYLHMTNDG--FKMARGLYEDRMRF-VDTLPLL 481
FA TG P+ + W + + Y + D K+ARG R F D LP +
Sbjct: 511 SAVIEFAKTGNPAQDGEEWPNFSKEDPVYYIFSTDDKIEKLARGPLAARCSFWNDYLPKV 570
Query: 482 NN 483
+
Sbjct: 571 RS 572
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 369 bits (950), Expect = e-124
Identities = 118/488 (24%), Positives = 197/488 (40%), Gaps = 71/488 (14%)
Query: 11 PQPHPGWSDTKNATEHGNECPQR-----NYFNHQLIGSDNCLFLNVYTPKIDPNAKLPVM 65
P+P W D +AT +G CPQ + S++CL++NV+ P P+ LPVM
Sbjct: 42 PEPPEVWEDVLDATAYGPICPQPSDLLSLSYTELPRQSEDCLYVNVFAPD-TPSQNLPVM 100
Query: 66 VYIHGGAFKGGNTRFLK---EKFIMDKNIVYVAIQYRIGILGFMSF--LDDVIPGNFGLK 120
V+IHGGAF G K ++ V + YR+G GF+ D+ N GL
Sbjct: 101 VWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFDEAYSDNLGLL 160
Query: 121 DQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPLAKGLFHNAIIQGGTATS 180
DQ ALKWV++NI+ FGGDP VT+FG SAG ++ L+ P AKGLF AI++ G + +
Sbjct: 161 DQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRT 220
Query: 181 PWAYIPQTVAKQRAEAVATLLGCPSKPTTEALACMRDIPSDNFIIVTDKFLEWDLSPLG- 239
A A A +LG L + + +++ + D+ + +
Sbjct: 221 MTKE----QAASTAAAFLQVLGIN----ESQLDRLHTVAAEDLLKAADQLRIAEKENIFQ 272
Query: 240 -PFSPITDSFMGAGAVVPDHPLAL----PPNPVNIILGYNSYEGNMIASMVCFNEFRLAR 294
F P D +P+ P + + +++G EG + + +
Sbjct: 273 LFFQPALD-----PKTLPEEPEKSIAEGAASGIPLLIGTTRDEGYLFFTPDSDVHSQ--- 324
Query: 295 DMEVDLPRRLALLTNLQDQVKYSEKAKVADRLFEFYLNSQNISKDNVYKFADLGTDILFG 354
L ++Y +A++ + Y ++ + TD+LF
Sbjct: 325 -------------ETLDAALEYLLGKPLAEKAADLY-------PRSLESQIHMMTDLLFW 364
Query: 355 HPSFKAALNYYKKVPLYFYLYDITPRITLLTMFGNCTHLRGPSHGEEIVYFFNDI----- 409
P+ A P++ Y +D P H E+ + F ++
Sbjct: 365 RPAVAYASAQSHYAPVWMYRFDWHPE---------KPPYNKAFHALELPFVFGNLDGLER 415
Query: 410 IPNFELTPEEHKLSHRLLDLWTSFASTGVPSD---TWTPVASDRIEYLHMTNDGFKMARG 466
+ E+T E +LSH + W +FA TG PS W + E + + + +
Sbjct: 416 MAKAEITDEVKQLSHTIQSAWITFAKTGNPSTEAVNWPAYHEETRETVIL-DSEITIEND 474
Query: 467 LYEDRMRF 474
++ +
Sbjct: 475 PESEKRQK 482
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 362 bits (931), Expect = e-121
Identities = 112/494 (22%), Positives = 186/494 (37%), Gaps = 71/494 (14%)
Query: 11 PQPHPGWSDTKNATEHGNECPQRNYFNHQLIG-------SDNCLFLNVYTPKIDPNAKLP 63
P+P W + AT G Q + + S++ L+LN+++P D K P
Sbjct: 42 PEPPDAWDGVREATSFGPVVMQPSDPIFSGLLGRMSEAPSEDGLYLNIWSPAADG-KKRP 100
Query: 64 VMVYIHGGAFKGGNTRFLK---EKFIMDKNIVYVAIQYRIGILGFMSFLD-----DVIPG 115
V+ +IHGGAF G+ F ++V V I YR+ + GF+ D G
Sbjct: 101 VLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFGFLHLGDSFGEAYAQAG 160
Query: 116 NFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPLAKGLFHNAIIQG 175
N G+ DQ+ AL+WV++NIA FGGDP +TIFG SAGAA+V L+ P A GLF A++Q
Sbjct: 161 NLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQS 220
Query: 176 GTATSPWAYIPQTVAKQRAEAVATLLGCPSKPTTEALACMRDIPSDNFIIVTDKFLEWDL 235
G+ + A E + G + IP++ + L
Sbjct: 221 GSGSLLLR--SPETAMAMTERILDKAGIR----PGDRERLLSIPAEELLRA-----ALSL 269
Query: 236 SPLGPFSPITDSFMGAGAVVPDHPLALPP----NPVNIILGYNSYEGNMIASMVCFNEFR 291
P + P+ D G V+ HP+ + + I++G E N+ +
Sbjct: 270 GPGVMYGPVVD-----GRVLRRHPIEALRYGAASGIPILIGVTKDEYNLFTLT----DPS 320
Query: 292 LARDMEVDLPRRLALLTNLQDQVKYSEKAKVADRLFEFYLNSQNISKDNVYKFADLGTDI 351
+ E +L R+ E V + +Y + S + + T
Sbjct: 321 WTKLGEKELLDRIN-----------REVGPVPEEAIRYYKETAEPSAPTWQTWLRIMTYR 369
Query: 352 LFGHPSFKAALNYYK-KVPLYFYLYDITPRITLLTMFGNCTHLRGPSHGEEIVYFFN--- 407
+F + A +Y Y +D + + H E+ + F+
Sbjct: 370 VFVEGMLRTADAQAAQGADVYMYRFDYETPVFGGQL--------KACHALELPFVFHNLH 421
Query: 408 --DIIPNFELTPEEHKLSHRLLDLWTSFASTGVPS-----DTWTPVASDRIEYLHMTNDG 460
+ PE +++ + W SFA TG P+ + W ++R +
Sbjct: 422 QPGVANFVGNRPEREAIANEMHYAWLSFARTGDPNGAHLPEAWPAYTNERKAAFVF-SAA 480
Query: 461 FKMARGLYEDRMRF 474
+ +
Sbjct: 481 SHVEDDPFGRERAA 494
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 343 bits (881), Expect = e-113
Identities = 109/500 (21%), Positives = 181/500 (36%), Gaps = 65/500 (13%)
Query: 11 PQPHPGWSDTKNATEHGNECPQRNYFNHQLIGSDNCLFLNVYTP-KIDPNAKLPVMVYIH 69
PQ P ++ATE+G C + S++CLF+NV+ P +KLPV ++I
Sbjct: 50 PQDPPANQTLQSATEYGPICIGLDEEESPGDISEDCLFINVFKPSTATSQSKLPVWLFIQ 109
Query: 70 GGAF-KGGNTRFLKEKFIM--DKNIVYVAIQYRIGILGFMSF--LDDVIPGNFGLKDQIF 124
GG + + N + + I D IV+V YR+G LGF++ + N GL DQ
Sbjct: 110 GGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNGDLNAGLLDQRK 169
Query: 125 ALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPLAK--GLFHNAIIQGGTATSPW 182
AL+WV+ I FGGDP + I G SAGA +V Y + + K GLF AI++ +
Sbjct: 170 ALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQR 229
Query: 183 AYIPQTVAKQRAEAVATLLGCPSKPTTEALACMRDIPSDNFI----IVTDKFLEWDLSPL 238
+ + + E GC S ++L C+R+ P
Sbjct: 230 TV---SEMEFQFERFVNDTGCSS--ARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPD 284
Query: 239 GPFSPITDSFMGAGAVVPDHPLALPP----NPVNIILGYNSYEGNMIASMVCFNEFRLAR 294
F P+TD G++VPD V +++G ++ EG+ A +
Sbjct: 285 WYFLPVTD-----GSLVPDELYNAFDAGNFIKVPVLVGDDTDEGSNFAYNASSSA----- 334
Query: 295 DMEVDLPRRLALLTNLQDQVKYSEKAKVADRLFEFYLNSQNISKDNVY--KFADLGTDIL 352
D+ LT+ Q + + + Y + + + Y + D
Sbjct: 335 DVSRFFKNNYPNLTSQQ-----------LNEINQVYPRGKLLPRHAAYFGASSAAYGDAT 383
Query: 353 FGHPSFKAALNY--YKKVPLYFYLYDITPRITLLTMFGNCTHLRGPSHGEEIVYFFN--- 407
F P A + Y ++ Y +I + G H E+ F
Sbjct: 384 FTCPGNHVASSAARYLPNSVWNYRVNIIDESNIAGGI-------GVPHTFELPAIFGAGS 436
Query: 408 --DIIPNFELTPEEHKLSHRLLDLWTSFASTGVPSD-------TWTPVASDRIEYLHMTN 458
+ + + + + SF T P+ W + + L +
Sbjct: 437 TGTLSSDSSYLTYNAAIIPVTMHYFISFVQTLNPNTYRYATAPEWNTWGNGQRLRLQTND 496
Query: 459 DGFKMARGLYEDRMRFVDTL 478
+ F +L
Sbjct: 497 TAMEAVPESSLQDCAFWKSL 516
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 325 bits (834), Expect = e-106
Identities = 132/535 (24%), Positives = 196/535 (36%), Gaps = 92/535 (17%)
Query: 8 LQDPQPHPGWSDTKNATEHGNECPQRNYFNHQLIG------------------------- 42
+ PQP G A + C Q + N +
Sbjct: 39 FKHPQPFTGSYQGLKANDFSPACMQLDPGNSLTLLDKALGLAKVIPEEFRGPLYDMAKGT 98
Query: 43 ---SDNCLFLNVYTPK-IDPNAKLPVMVYIHGGAFKGGN------TRFLKEKFIMDKNIV 92
+++CL+LNV+ P P+AKLPVMV+I+GGAF G+ ++KE M + +V
Sbjct: 99 VSMNEDCLYLNVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVV 158
Query: 93 YVAIQYRIGILGFMSFLDDVIPG--NFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSA 150
+V+I YR G GF+ G N GL DQ L+WV DNIA+FGGDP +V IFG SA
Sbjct: 159 FVSINYRTGPFGFLGGDAITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESA 218
Query: 151 GAAAVDYLVIS------PLAKGLFHNAIIQGGTATSPWAYIPQTVAKQRAEAVATLLGCP 204
GA +V + +I+ K LFH+AI+Q G P+ A GC
Sbjct: 219 GAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGPL-PYHDSSSVGPDISYNRFAQYAGCD 277
Query: 205 SKPT-TEALACMRDIPSDNFIIVTDKFLEWDL----SPLGPFSPITDSFMGAGAVVPDHP 259
+ + + L C+R S + + DL F P D G ++PD
Sbjct: 278 TSASANDTLECLRSKSSSVLHDAQNSYDLKDLFGLLPQFLGFGPRPD-----GNIIPDAA 332
Query: 260 LALPP----NPVNIILGYNSYEGNMIASMVCFNEFRLARDMEVDLPRRLALLTNLQ-DQV 314
L V I G EG A + ++ L + D+V
Sbjct: 333 YELFRSGRYAKVPYISGNQEDEGTAFAPVALNATTT--PHVKKWLQYIFYDASEASIDRV 390
Query: 315 --KYSEKAKVADRLFEFYLNSQNISKDNVYKFADLGTDILFGHPSFKAALNYYKKVPLYF 372
Y + V F N + A + +D+LF P + K V +
Sbjct: 391 LSLYPQTLSVGS---PFRTGILNALTPQFKRVAAILSDMLFQSPRRVML-SATKDVNRWT 446
Query: 373 YLYDITPRITLLTMFGNCTHLRGPSHGEEIVYFFNDIIPNFELTPEEHKLSHRLLDLWTS 432
YL + G HG E+++ FN ++ L + S
Sbjct: 447 YLSTHLHNL---------VPFLGTFHGNELIFQFN----------VNIGPANSYLRYFIS 487
Query: 433 FASTGVPSD-----TWTPVASDRIEYLHMTNDGFKMARGLY-EDRMRFVDTLPLL 481
FA+ P+ W + E L + M Y + + +T L
Sbjct: 488 FANHHDPNVGTNLLQWDQYTDEGKEMLEIHMTDNVMRTDDYRIEGISNFETDVNL 542
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 315 bits (808), Expect = e-102
Identities = 116/527 (22%), Positives = 196/527 (37%), Gaps = 88/527 (16%)
Query: 8 LQDPQPHPGWSDTKNATEHGNECPQRNY---------------------FNHQLIGSDNC 46
+DP P+ G + + T +G C Q+N F L S++C
Sbjct: 38 FKDPVPYSGSLNGQKFTSYGPSCMQQNPEGTFEENLGKTALDLVMQSKVFQAVLPQSEDC 97
Query: 47 LFLNVYTPK-IDPNAKLPVMVYIHGGAFKGGN------TRFLKEKFIMDKNIVYVAIQYR 99
L +NV P A LPVM++I GG F+ G+ + + + +M K I++VA+ YR
Sbjct: 98 LTINVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYR 157
Query: 100 IGILGFMSF--LDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDY 157
+ GF++ + GN GLKDQ ++WV DNIA FGGDPS+VTIFG SAG+ +V
Sbjct: 158 VASWGFLAGDDIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLC 217
Query: 158 LVI------SPLAKGLFHNAIIQGGTATSPWAYIPQTVAKQRAEAVATLLGCPSKPTTEA 211
+I + K LF I+Q G P + T + + + GC S ++
Sbjct: 218 HLIWNDGDNTYKGKPLFRAGIMQSGAMV-PSDPVDGTYGNEIYDLFVSSAGCGS--ASDK 274
Query: 212 LACMRDIPSDNFIIVTDKFLEW--DLSPLGPFSPITDSFMGAGAVVPDHPLALPP----N 265
LAC+R SD + T+ + S + P D G + D L
Sbjct: 275 LACLRSASSDTLLDATNNTPGFLAYSSLRLSYLPRPD-----GKNITDDMYKLVRDGKYA 329
Query: 266 PVNIILGYNSYEGNMIASMVCFNEFRLARDMEVDLPRRLALLTNLQ-DQVK--YSEKAKV 322
V +I+G + EG + + ++ + D + Y +
Sbjct: 330 SVPVIIGDQNDEGTIFGLSSLNVTTN--AQARAYFKQSFIHASDAEIDTLMAAYPQDITQ 387
Query: 323 ADRLFEFYLNSQNISKDNVYKFADLGTDILFGHPSFKAALNYYKKVPLYFYLYDITPRIT 382
F N + + + D+ F H N+++ Y +L +
Sbjct: 388 GS---PFDTGIFNAITPQFKRISAVLGDLAFIHARRYFL-NHFQGGTKYSFLSKQLSGLP 443
Query: 383 LLTMFGNCTHLRGPSHGEEIVYFFNDIIPNFELTPEEHKLSHRLLDLWTSFASTGVPSD- 441
++ G H +IV+ + S + + +FA+ P+
Sbjct: 444 IM----------GTFHANDIVWQDYLL----------GSGSVIYNNAFIAFATDLDPNTA 483
Query: 442 -------TWTPVASDRIEYLHMTNDGFKMARGLY-EDRMRFVDTLPL 480
+T + + + G + + + T P
Sbjct: 484 GLLVNWPKYTSSSQSGNNLMMINALGLYTGKDNFRTAGYDALMTNPS 530
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 59.8 bits (145), Expect = 3e-10
Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 10/126 (7%)
Query: 32 QRNYFNHQLIGSDNCLFLNVY---TPKIDPNAKLPVMVYIHGGAFKGGNTRFLKE--KFI 86
N ++ +++ Y P+ + N P ++ GG ++ + R
Sbjct: 10 YNKLMNKSTFSLNDTAWVDFYQLQNPRQNENYTFPAIIICPGGGYQHISQRESDPLALAF 69
Query: 87 MDKNIVYVAIQYRIGILGFMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIF 146
+ + + + Y + G L++ + N + +P +V +
Sbjct: 70 LAQGYQVLLLNYTVMNKGTNYNFLSQN-----LEEVQAVFSLIHQNHKEWQINPEQVFLL 124
Query: 147 GGSAGA 152
G SAG
Sbjct: 125 GCSAGG 130
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 58.3 bits (141), Expect = 1e-09
Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 13/124 (10%)
Query: 35 YFNHQLIGSDNCLFLNVYTPK----IDPNAKLPVMVYIHGGAFKGGNTRFLKE--KFIMD 88
L + + + Y + P+M+ GG F + R +M
Sbjct: 4 VEQRTLNTAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMA 63
Query: 89 KNIVYVAIQYRIGILGFMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGG 148
+ V + Y++ + + L+ + W+ + D R+ + G
Sbjct: 64 AGMHTVVLNYQLIVGDQSVYPW-------ALQQLGATIDWITTQASAHHVDCQRIILAGF 116
Query: 149 SAGA 152
SAG
Sbjct: 117 SAGG 120
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 58.4 bits (141), Expect = 1e-09
Identities = 17/137 (12%), Positives = 45/137 (32%), Gaps = 18/137 (13%)
Query: 49 LNVYTPKIDPNAKLPVMVYIHGGAFKGGN---TRFLKEKFIMDKNIVYVAIQYRI-GILG 104
++V+ + + P+ V++HGG ++ + + + + + + Y + +
Sbjct: 70 VDVFYSE-KTTNQAPLFVFVHGGYWQEMDMSMSCSIVGPLV-RRGYRVAVMDYNLCPQVT 127
Query: 105 FMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPLA 164
+ L W+ D S +T G AGA + +++ P
Sbjct: 128 LEQLMTQF----------THFLNWIFDYTE--MTKVSSLTFAGHXAGAHLLAQILMRPNV 175
Query: 165 KGLFHNAIIQGGTATSP 181
+ ++
Sbjct: 176 ITAQRSKMVWALIFLCG 192
>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP:
c.69.1.2 PDB: 1lzk_A
Length = 323
Score = 58.4 bits (142), Expect = 1e-09
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 26/116 (22%)
Query: 51 VYTPKIDPNAKLPVMVYIHGGAFKGGN----TRFLKEKFIMDKNIVYVAIQYRIGILG-- 104
TP + +PV+++IHGG F G F E + ++YR L
Sbjct: 69 FVTPD-NTAGPVPVLLWIHGGGFAIGTAESSDPFCVE-VARELGFAVANVEYR---LAPE 123
Query: 105 --FMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAG---AAAV 155
F ++D AL ++ + G DPSR+ + G SAG AA
Sbjct: 124 TTFPGPVNDCY----------AALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGT 169
>2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein; tertiary
alcohol; 2.00A {Pyrobaculum calidifontis} PDB: 2yh2_A
3zwq_A
Length = 313
Score = 58.1 bits (141), Expect = 2e-09
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 33/133 (24%)
Query: 37 NHQLIGSDNCLFLNVYTPKIDPNAKLPVMVYIHGGAFKGGN-------TRFLKEKFIMDK 89
+ + G + VY P+ +LP +VY HGG F G+ R L
Sbjct: 53 DITIPGRGGPIRARVYRPR--DGERLPAVVYYHGGGFVLGSVETHDHVCRRLAN----LS 106
Query: 90 NIVYVAIQYRIGILG----FMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTI 145
V V++ YR L F + ++D A KWV DN G D ++ +
Sbjct: 107 GAVVVSVDYR---LAPEHKFPAAVEDAY----------DAAKWVADNYDKLGVDNGKIAV 153
Query: 146 FGGSAG---AAAV 155
G SAG AA
Sbjct: 154 AGDSAGGNLAAVT 166
>2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A
{Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A
1qz3_A
Length = 310
Score = 57.6 bits (140), Expect = 2e-09
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 32/119 (26%)
Query: 51 VYTPKIDPNAKLPVMVYIHGGAFKGGN-------TRFLKEKFIMDKNIVYVAIQYRIGIL 103
+Y P+ P +VY HGG++ G+ R L + D V ++ YR L
Sbjct: 64 MYRPE-GVEPPYPALVYYHGGSWVVGDLETHDPVCRVLAK----DGRAVVFSVDYR---L 115
Query: 104 G----FMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAG---AAAV 155
F + ++D AL+W+ + A F DP+R+ + G SAG AA
Sbjct: 116 APEHKFPAAVEDAY----------DALQWIAERAADFHLDPARIAVGGDSAGGNLAAVT 164
>3h04_A Uncharacterized protein; protein with unknown function, structural
genomics, MCSG, PS protein structure initiative; 1.90A
{Staphylococcus aureus subsp}
Length = 275
Score = 56.4 bits (136), Expect = 4e-09
Identities = 27/165 (16%), Positives = 50/165 (30%), Gaps = 29/165 (17%)
Query: 47 LFLNVYTPKIDPNAKLPVMVYIHGGAFKGGNTRFLKEKF--IMDKNIVYVAIQYRIGILG 104
L + K P V+VYIHGG G L ++ I+ ++ + + YR L
Sbjct: 16 LPYTIIKAKNQP--TKGVIVYIHGGGLMFGKANDLSPQYIDILTEHYDLIQLSYR---LL 70
Query: 105 ----FMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAG---AAAVDY 157
++DV + +Q + FG S+G + +
Sbjct: 71 PEVSLDCIIEDVYA----------SFDAIQSQY-----SNCPIFTFGRSSGAYLSLLIAR 115
Query: 158 LVISPLAKGLFHNAIIQGGTATSPWAYIPQTVAKQRAEAVATLLG 202
+ + I + +Y + +A L
Sbjct: 116 DRDIDGVIDFYGYSRINTEPFKTTNSYYAKIAQSINETMIAQLTS 160
>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE;
2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2
Length = 311
Score = 56.5 bits (137), Expect = 6e-09
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 35/133 (26%)
Query: 37 NHQLIGSDNCLFLNVYTPKIDPNAKLPVMVYIHGGAFKGGN-------TRFLKEKFIMDK 89
+ + G + + + VY K PV+VY HGG F + R +
Sbjct: 58 DRTIKGRNGDIRVRVYQQK----PDSPVLVYYHGGGFVICSIESHDALCRRIAR----LS 109
Query: 90 NIVYVAIQYRIGILG----FMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTI 145
N V++ YR L F + + D A KWV +N DPS++ +
Sbjct: 110 NSTVVSVDYR---LAPEHKFPAAVYDCY----------DATKWVAENAEELRIDPSKIFV 156
Query: 146 FGGSAG---AAAV 155
G SAG AAAV
Sbjct: 157 GGDSAGGNLAAAV 169
>2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme,
hydrolase, HSL, alpha/beta hydrolase fold; 2.3A
{Uncultured archaeon}
Length = 311
Score = 56.5 bits (137), Expect = 6e-09
Identities = 39/119 (32%), Positives = 50/119 (42%), Gaps = 33/119 (27%)
Query: 51 VYTPKIDPNAKLPVMVYIHGGAFKGGN-------TRFLKEKFIMDKNIVYVAIQYRIGIL 103
VY PK A LP ++Y HGG F G+ R L + V V++ YR L
Sbjct: 64 VYFPK--KAAGLPAVLYYHGGGFVFGSIETHDHICRRLSR----LSDSVVVSVDYR---L 114
Query: 104 G----FMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAG---AAAV 155
F + ++D ALKWV D G DP R+ + G SAG AA V
Sbjct: 115 APEYKFPTAVEDAY----------AALKWVADRADELGVDPDRIAVAGDSAGGNLAAVV 163
>3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural
genomics CEN infectious disease, tuberculosis, O LIPW,
heroin esterase; 1.75A {Mycobacterium marinum}
Length = 317
Score = 56.1 bits (136), Expect = 7e-09
Identities = 32/118 (27%), Positives = 43/118 (36%), Gaps = 32/118 (27%)
Query: 51 VYTPKIDPNAKLPVMVYIHGGAFKGGN-------TRFLKEKFIMDKNIVYVAIQYRIGIL 103
+Y P PV+VY H G F GN L + V++ YR+
Sbjct: 77 IYRAAPTP---APVVVYCHAGGFALGNLDTDHRQCLELARRA----RCAVVSVDYRLA-- 127
Query: 104 GFMSFLDDVIPGN-F--GLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAG---AAAV 155
P + + L D I L WV N G D R+ + G SAG AA +
Sbjct: 128 ----------PEHPYPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGL 175
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 55.2 bits (133), Expect = 1e-08
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 11/141 (7%)
Query: 16 GWSDTKNATEHGNECPQR-NYFNHQLIGSDNCLFLNVYTPKIDP-NAKLPVMVYIHGGAF 73
G + H N Q +L + L ++ P + LP ++ + GG++
Sbjct: 2 GSDKIHHHHHHENLYFQGMQVIKQKLTATCAQLTGYLHQPDTNAHQTNLPAIIIVPGGSY 61
Query: 74 KGGNTRFLKE--KFIMDKNIVYVAIQYRIGILGFMSFLDDVIPGNFGLKDQIFALKWVQD 131
+ ++Y + L + D A+ ++
Sbjct: 62 THIPVAQAESLAMAFAGHGYQAFYLEYTLLTDQQPLGLAP-------VLDLGRAVNLLRQ 114
Query: 132 NIAHFGGDPSRVTIFGGSAGA 152
+ A + DP ++T G S G
Sbjct: 115 HAAEWHIDPQQITPAGFSVGG 135
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 55.5 bits (133), Expect = 2e-08
Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 15/146 (10%)
Query: 50 NVYTPK-IDPNAKLPVMVYIHGG-----------AFKGGNTRFLKEKFIMDKNIVYVAIQ 97
++ PK ++P+ K P++V++HG A G + + ++ + +A Q
Sbjct: 161 RLFVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQ 220
Query: 98 YRIGILGFMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDY 157
+ + D K + +K ++ + + D +R+ I G S G
Sbjct: 221 CPPNS-SWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWT 279
Query: 158 LVISPLAKGLFHNAIIQGGTATSPWA 183
++ LF AI G
Sbjct: 280 AIME--FPELFAAAIPICGGGDVSKV 303
>3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella
typhimurium}
Length = 326
Score = 55.0 bits (133), Expect = 2e-08
Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 34/119 (28%)
Query: 51 VYTPKIDPNAKLPVMVYIHGGAFKGGN-------TRFLKEKFIMDKNIVYVAIQYRIGIL 103
+Y+P+ + Y+HGG F GN R L + I Y L
Sbjct: 79 LYSPQ---PTSQATLYYLHGGGFILGNLDTHDRIMRLLAR----YTGCTVIGIDYS---L 128
Query: 104 G----FMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAG---AAAV 155
+ +++ + + + + + ++ G SAG A A
Sbjct: 129 SPQARYPQAIEETV----------AVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALAS 177
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 52.3 bits (125), Expect = 1e-07
Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 24/112 (21%)
Query: 49 LNVYTPKIDPNAKLPVMVYIHGGAFKGGNTRFLKEKFIM--------DKNIVYVAIQYRI 100
+ ++YIHGGA+ + + + +I+YR+
Sbjct: 30 TLTFQEI--SQNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRL 87
Query: 101 GILGFMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGA 152
+ P L D + + + + + + G S GA
Sbjct: 88 SP-------EITNPR--NLYDAVSNITRLVKE-----KGLTNINMVGHSVGA 125
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO
PSI-2, protein structure initiative, midwest center for
STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Length = 274
Score = 51.8 bits (124), Expect = 1e-07
Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 27/113 (23%)
Query: 51 VYTPKIDPNAKLPVMVYIHGGAFKGGNTRFLKE---KFIMDKNIVYVAIQYRIGILGFMS 107
+Y +P +VY+HGG G L E + +A+ Y +
Sbjct: 19 IYPTTTEP---TNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLA------ 69
Query: 108 FLDDVIPGN-F--GLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGA--AAV 155
P L+ + + + + G SAG
Sbjct: 70 ------PNTKIDHILRTLTETFQLLNEE----IIQNQSFGLCGRSAGGYLMLQ 112
>1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A,
alpha/beta hydrolase family; 1.85A {Bacillus subtilis}
SCOP: c.69.1.2
Length = 361
Score = 51.7 bits (124), Expect = 3e-07
Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 25/119 (21%)
Query: 49 LNVYTPKIDPNAKLPVMVYIHGGAFKGGNT---------RFLKEKFIMDKNIVYVAIQYR 99
L+V+ P LP +VY HGG T L V V + +R
Sbjct: 97 LHVFRPA-GVEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAA-----GSVVVMVDFR 150
Query: 100 IGILGFMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAG---AAAV 155
+ + P G++D + A+ WV ++ G V G S G A A
Sbjct: 151 ---NAWTAEGHHPFPS--GVEDCLAAVLWVDEHRESLGLSGVVVQ--GESGGGNLAIAT 202
>3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic,
dimer, archaea, R267G, hydro; 1.65A {Sulfolobus
tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A
Length = 323
Score = 50.7 bits (122), Expect = 5e-07
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 32/132 (24%)
Query: 37 NHQLIGSDNCLFLNVYTPKIDPNAKLPVMVYIHGGAFKGGN-------TRFLKEKFIMDK 89
+ + GS+ + VY PK V+VY HGG F G+ R +
Sbjct: 67 DITIPGSETNIKARVYYPK--TQGPYGVLVYYHGGGFVLGDIESYDPLCRAITN----SC 120
Query: 90 NIVYVAIQYRIGILGFMSFLDDVIPGN-F--GLKDQIFALKWVQDNIAHFGGDPSRVTIF 146
V +++ YR+ P N F + D ALKWV +N F + +
Sbjct: 121 QCVTISVDYRLA------------PENKFPAAVVDSFDALKWVYNNSEKFN-GKYGIAVG 167
Query: 147 GGSAG---AAAV 155
G SAG AA
Sbjct: 168 GDSAGGNLAAVT 179
>2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia
eriantha} PDB: 2o7v_A
Length = 338
Score = 50.1 bits (120), Expect = 7e-07
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 29/131 (22%)
Query: 41 IGSDNCLFLNVYTPK--IDPNAKLPVMVYIHGGAFKGGNT------RFLKEKFIMDKNIV 92
+ + F+ ++ P+ + +AKLP++VY HGG F + F + + +V
Sbjct: 60 LNPLHNTFVRLFLPRHALYNSAKLPLVVYFHGGGFILFSAASTIFHDFC-CEMAVHAGVV 118
Query: 93 YVAIQYRIGILGFMSFLDDVIPGN-F--GLKDQIFALKWVQDNIAHF---GGDPSRVTIF 146
++ YR+ P + D + AL+W++D+ + D S I
Sbjct: 119 IASVDYRLA------------PEHRLPAAYDDAMEALQWIKDSRDEWLTNFADFSNCFIM 166
Query: 147 GGSAGA--AAV 155
G SAG A
Sbjct: 167 GESAGGNIAYH 177
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold,
structural genomics, joint cente structural genomics,
JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 49.1 bits (117), Expect = 1e-06
Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 22/134 (16%)
Query: 42 GSDNCLFLNVYTPKIDPNAKLPVMVYIHGGAFKGG---NTRFLKEKFIMDKNIVYVAIQY 98
G + +++ P+ + + V++HGG + + L + K Y
Sbjct: 46 GEGDRHKFDLFLPE---GTPVGLFVFVHGGYWMAFDKSSWSHLAVGAL-SKGWAVAMPSY 101
Query: 99 RIGILGFMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYL 158
L + ++ + A+ + + G SAG V +
Sbjct: 102 E---LCPEVRISEIT------QQISQAVTAAAKE------IDGPIVLAGHSAGGHLVARM 146
Query: 159 VISPLAKGLFHNAI 172
+ + I
Sbjct: 147 LDPEVLPEAVGARI 160
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 48.6 bits (116), Expect = 4e-06
Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 27/132 (20%)
Query: 38 HQLIGSDNCLFLNV--YTPK-IDPNAKLPVMVYIHGG--------AFKGGNTRFLKEKFI 86
L +D LN P DP + PV VY++GG ++ G +++
Sbjct: 490 GTLTAADGKTPLNYSVIKPAGFDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLF-NQYL 548
Query: 87 MDKNIVYVAIQYR----IGILGFMSFLDDVIPGNFG---LKDQIFALKWVQDNIAHFGGD 139
+ V ++ R G F + G G + DQ+ + W++ D
Sbjct: 549 AQQGYVVFSLDNRGTPRRG-RDFG----GALYGKQGTVEVADQLRGVAWLK---QQPWVD 600
Query: 140 PSRVTIFGGSAG 151
P+R+ + G S G
Sbjct: 601 PARIGVQGWSNG 612
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 1e-05
Identities = 75/488 (15%), Positives = 141/488 (28%), Gaps = 148/488 (30%)
Query: 1 SLILDFGLQDPQPHPG-WSDTKNATEHGNECPQRNYFNHQLIGSDNCLFLNVYTPKIDPN 59
+ L + +Q W + KN +Q+ + +T + D +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN--------WTSRSDHS 220
Query: 60 AKLPVMVYIHGGAFKGGNTRFLKEKFIMDKNIVYVAIQYRIGILGFMSFLDDV----IPG 115
+ + + + + R LK K Y +L L +V
Sbjct: 221 SNIK----LRIHSIQAELRRLLKSK------------PYENCLL----VLLNVQNAKAWN 260
Query: 116 NFGLKDQIFAL---KWVQDNIAHFGGDPSRVTIFGGSAG----------AAAVDY----- 157
F L +I K V D ++ + +++ S +D
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLS--AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 158 ----LVISPLAKGLFHNAIIQGGTATSPWAYIPQTVAKQRAEAVATLLGC--PS--KPTT 209
L +P + I+ G AT W + + + L P+ +
Sbjct: 319 PREVLTTNPRRLSII-AESIRDGLAT--WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 210 EALACMRD---IPSDNFIIVTDKFLEW-DLSPLGPFSPITDSFMGAGAV----------V 255
+ L+ IP+ ++ W D+ + + V +
Sbjct: 376 DRLSVFPPSAHIPTILLSLI------WFDVIKSDVMV-VVNKLHKYSLVEKQPKESTISI 428
Query: 256 PDHPLALPPNPVNIILGYNSYEGNMIASMVCFNEFRLARDMEVDLPRRLALLTNLQDQVK 315
P L L N E + S+V + + + + + D L+ DQ
Sbjct: 429 PSIYLELKVKLEN--------EYALHRSIV--DHYNIPKTFDSD-----DLIPPYLDQYF 473
Query: 316 YS------EKAKVADRLFEF---YLN----SQNISKDNVYKFADLG-TDILFGHPSFKAA 361
YS + + +R+ F +L+ Q I D+ A + L
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL-------QQ 526
Query: 362 LNYYKKVPLYFYLYDITPRITLLTMFGNCTHLRGPSHGEEIVYFFNDIIPNFELTPEEHK 421
L +YK Y+ D P E +V N I+ +F EE+
Sbjct: 527 LKFYKP-----YICDNDP------------------KYERLV---NAIL-DFLPKIEENL 559
Query: 422 LSHRLLDL 429
+ + DL
Sbjct: 560 ICSKYTDL 567
Score = 31.0 bits (69), Expect = 1.2
Identities = 38/234 (16%), Positives = 75/234 (32%), Gaps = 49/234 (20%)
Query: 294 RDMEVDLPRRLALLTNLQDQVKYSEKAKVADRLFEFYLNSQNISKDNVYKFAD--LGTDI 351
+D++ D+P+ + + + + RLF L+ Q ++ V KF + L +
Sbjct: 36 KDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ---EEMVQKFVEEVLRINY 91
Query: 352 LF---------GHPSFKAALNYYKKVPLY-----FYLYDITPRITLLTMFGNC-THLRGP 396
F PS + ++ LY F Y++ R+ LR P
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELR-P 149
Query: 397 S-----HG----------------EEIVYFFNDIIPNFELTPEEHKLSHRLLDLWTSFAS 435
+ G ++ + I F L + +L++
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLY 207
Query: 436 TGVPSDTWTPVASDRIEYLHMTNDGFKMARGLYEDRMRFVDTLPLLNNQYNLRH 489
P+ T S I+ + R L + + + + L +L N N +
Sbjct: 208 QIDPNWTSRSDHSSNIK--LRIHSIQAELRRLLKSK-PYENCLLVLLNVQNAKA 258
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 47.0 bits (112), Expect = 1e-05
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 22/135 (16%)
Query: 31 PQRNYFNHQLIGSDNCLFLNVYTPK-IDPNAKLPVMVYIHGG--------AFKGGNTRFL 81
P+ L+ + P DP K PV+VY++GG ++ +
Sbjct: 453 PEIRTGTIMAADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGW- 511
Query: 82 KEKFIMDKNIVYVAIQYRIGILGFMS--FLDDVIPGNFG---LKDQIFALKWVQDNIAHF 136
+ ++ K + R G F VI G + DQ+ + +++ +
Sbjct: 512 -DIYMAQKGYAVFTVDSR-GS-ANRGAAFE-QVIHRRLGQTEMADQMCGVDFLK---SQS 564
Query: 137 GGDPSRVTIFGGSAG 151
D R+ + G S G
Sbjct: 565 WVDADRIGVHGWSYG 579
>3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase,
gibberellin signaling pathway, hydrolase, nucleus,
hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp}
PDB: 3ed1_A*
Length = 365
Score = 44.7 bits (106), Expect = 4e-05
Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 40/124 (32%)
Query: 52 YTPKIDPNAKLPVMVYIHGGAFKGGNT------RFLKEKFIMDKNIVYVAIQYRIGILGF 105
+ PV+++ HGG+F + + F+ V V++ YR
Sbjct: 102 FLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRR-FVKLSKGVVVSVNYR------ 154
Query: 106 MSFL----------DDVIPGNFGLKDQIFALKWVQDN--IAHFGGDPSRVTIFGGSAGA- 152
DD ALKWV + G +RV + G S+G
Sbjct: 155 ---RAPEHRYPCAYDDGW----------TALKWVMSQPFMRSGGDAQARVFLSGDSSGGN 201
Query: 153 -AAV 155
A
Sbjct: 202 IAHH 205
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 42.9 bits (101), Expect = 2e-04
Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 28/127 (22%)
Query: 51 VYTPKIDPNAKLPVMVYIHGGAFKGGNTRFLKEK-FIMDKNIVYVAIQYRIGILGF-MSF 108
V P +V +HGG F + + + V YR G G+ +
Sbjct: 350 VLESG-RAPTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYR-GSTGYGEEW 407
Query: 109 LDDVIPGNFGLKDQ---IFALKWVQDNIAHFGGDPSRVTIFGGSAG-------------- 151
+I G+ + A +W +++ G S + I G S G
Sbjct: 408 RLKII-GDPCGGELEDVSAAARWARES-----GLASELYIMGYSYGGYMTLCALTMKPGL 461
Query: 152 -AAAVDY 157
A V
Sbjct: 462 FKAGVAG 468
>3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha
sandwich, structural genomics, PSI-2; 1.83A {Bordetella
parapertussis 12822}
Length = 304
Score = 42.0 bits (97), Expect = 3e-04
Identities = 31/158 (19%), Positives = 46/158 (29%), Gaps = 8/158 (5%)
Query: 36 FNHQLIGSDNCLFLNVYTPKIDPNAKLPVMVYIHGGAFKGGNTRFLKEKFIMDKNIVYVA 95
+ +D LN Y P PV+V HG G + R ++ VA
Sbjct: 29 YLDDDRNADRPFTLNTYRPY-GYTPDRPVVVVQHGVLRNGADYRDFWIPAADRHKLLIVA 87
Query: 96 IQYRIGIL-------GFMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGG 148
+ I +F P + + + + A D +V +FG
Sbjct: 88 PTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGH 147
Query: 149 SAGAAAVDYLVISPLAKGLFHNAIIQGGTATSPWAYIP 186
SAG V L+ S G T P
Sbjct: 148 SAGGQFVHRLMSSQPHAPFHAVTAANPGWYTLPTFEHR 185
>3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured
bacterium} PDB: 3dnm_A
Length = 322
Score = 41.5 bits (98), Expect = 4e-04
Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 30/115 (26%)
Query: 51 VYTPKIDPNAKLPVMVYIHGGAFKGGNT---RFLKEKFIMDKNIVYVAIQYRIGILG--- 104
A ++Y HGG + G+ L + + ++ YR L
Sbjct: 72 RQAT---DGAGAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYR---LAPEN 125
Query: 105 -FMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAG---AAAV 155
F + +DD + A + + G R+ I G SAG A
Sbjct: 126 PFPAAVDDCV----------AAYRALLKT----AGSADRIIIAGDSAGGGLTTAS 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 4e-04
Identities = 64/399 (16%), Positives = 114/399 (28%), Gaps = 159/399 (39%)
Query: 126 LKWVQDNIAHFGGDPSRVTIFGG--------------------------SAGAAAVDYLV 159
+ V + A V IFGG A + L+
Sbjct: 146 FRAVGEGNAQL------VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 160 ISPL-AKGLFHNAI-----IQGGTATSPWAY-------IPQTVAKQRA--EAVATLLGC- 203
+ L A+ +F + ++ + T Y P Q A A LLG
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 204 PS---KPTTEALACMRDIPS----------DNFIIVTDKFLEWDLSPLG-------PFSP 243
P A + + + ++F + K + L +G P +
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV-LFFIGVRCYEAYPNTS 318
Query: 244 ITDSFM------GAGA-----VVPDHPLA------------LPPN-PVNIILGYNSYEGN 279
+ S + G + + LP V I L N + N
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-VNGAK-N 376
Query: 280 MI-----ASMVCFN-EFR-LARDMEVDLPRRLALLTNLQDQVKYSE-KAKVADRLFEF-- 329
++ S+ N R +D Q ++ +SE K K ++R F
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLD-----------QSRIPFSERKLKFSNR---FLP 422
Query: 330 --------YLNSQNISKDNVYKFADLGTDILFGHPSFKAA-LNYYKKVPLYF-------- 372
L + D + DL + + SF A + ++P+Y
Sbjct: 423 VASPFHSHLLVP---ASDLI--NKDLVKNNV----SFNAKDI----QIPVYDTFDGSDLR 469
Query: 373 -YLYDITPRIT--LLTM---FGNCTHLRGPSHGEEIVYF 405
I+ RI ++ + + T + +H I+ F
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFK-ATH---ILDF 504
Score = 38.9 bits (90), Expect = 0.004
Identities = 42/243 (17%), Positives = 72/243 (29%), Gaps = 83/243 (34%)
Query: 3 ILDFGLQDPQPHPGWSDTKNATEH-GNECPQRNYFNHQLIGSDNCLFLNVYTPKIDPNAK 61
ILD + +P N T H G E +R N+ + + + + T KI
Sbjct: 1661 ILDIVINNP---------VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 62 LPVMVYIHGGAFKGGN-----TRF---------------LKEKFIMDKNIV--------Y 93
Y F+ T+F LK K ++ + Y
Sbjct: 1712 EHSTSYT----FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY 1767
Query: 94 VAIQYRIGIL----GFMSFLDDVIP-----GNFGLKDQIFALKWVQDNIAHFGGDPSRVT 144
A L MS + ++ G ++ + + + N +P RV
Sbjct: 1768 AA-------LASLADVMSI-ESLVEVVFYRGMT-MQVAVPRDELGRSNYGMIAINPGRV- 1817
Query: 145 IFGGSAGAAAVDYLV--ISPLAKGLF-----HNAIIQGGTATSPWAYIPQTVAKQRAEAV 197
S A+ Y+V + G +N ++ Q VA A+
Sbjct: 1818 --AASFSQEALQYVVERVGK-RTGWLVEIVNYN--VENQ----------QYVAAGDLRAL 1862
Query: 198 ATL 200
T+
Sbjct: 1863 DTV 1865
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 41.8 bits (98), Expect = 5e-04
Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 25/115 (21%)
Query: 51 VYTPKIDPNAKLPVMVYIHGG--------AFKGGNTRFLKEKFIMDKNIVYVAIQYRIGI 102
+ P D + K P+++ ++ G F+ +NI+ + R G
Sbjct: 491 ILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLN----WATYLASTENIIVASFDGR-GS 545
Query: 103 LGFMSF-LDDVIPGNFG---LKDQIFALKWVQDN--IAHFGGDPSRVTIFGGSAG 151
G+ + I G ++DQI A + + D R+ I+G S G
Sbjct: 546 -GYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFV-----DNKRIAIWGWSYG 594
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 41.0 bits (96), Expect = 9e-04
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 23/114 (20%)
Query: 51 VYTPKIDPNAKLPVMVYIHGG--------AFKGGNTRFLKEKFIMDKNIVYVAIQYRIGI 102
+ P+ D + K P+++ ++GG F + +V + R G
Sbjct: 485 ILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVN----WISYLASKEGMVIALVDGR-GT 539
Query: 103 LGFMSFLDDVIPGNFG---LKDQIFALKWVQDN--IAHFGGDPSRVTIFGGSAG 151
L + G ++DQI A++ + I D R+ I+G S G
Sbjct: 540 AFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFI-----DEKRIAIWGWSYG 588
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 40.6 bits (95), Expect = 0.001
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 23/114 (20%)
Query: 51 VYTPKIDPNAKLPVMVYIHGG--------AFKGGNTRFLKEKFIMDKNIVYVAIQYRIGI 102
+ P+++ + G F+ + + V V R G
Sbjct: 485 LKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVM----VSSHGAVVVKCDGR-GS 539
Query: 103 LGFMSFLDDVIPGNFG---LKDQIFALKWVQDN--IAHFGGDPSRVTIFGGSAG 151
+ L + G KDQ+ A++ + I D +RV +FG G
Sbjct: 540 GFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYI-----DRTRVAVFGKDYG 588
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 39.8 bits (92), Expect = 0.002
Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 18/147 (12%)
Query: 44 DNCLFLNVYTPKIDPNAKLPVMVYIHGGAFKGGNTRFLKEKFIMDKNIVYVAIQYRIGIL 103
+ ++ P P +V + G GG + + K +A+ Y
Sbjct: 158 VGRVRGTLFLPP--EPGPFPGIVDMFGT---GGGLLEYRASLLAGKGFAVMALAYYNYE- 211
Query: 104 GFMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPL 163
++ + L+ A+ ++ +H V + G S G L ++
Sbjct: 212 DLPKTMETL-----HLEYFEEAMNYLL---SHPEVKGPGVGLLGISKGGELC--LSMASF 261
Query: 164 AKGLFHNAIIQGGTA--TSPWAYIPQT 188
KG+ +I G A Y +T
Sbjct: 262 LKGITAAVVINGSVANVGGTLRYKGET 288
>3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured
bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A*
3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A
Length = 322
Score = 39.2 bits (92), Expect = 0.002
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 30/115 (26%)
Query: 51 VYTPKIDPNAKLPVMVYIHGGAFKGGNT---RFLKEKFIMDKNIVYVAIQYRIGILG--- 104
V P ++Y+HGG + G+ R + + + + YR L
Sbjct: 72 VRAPGCQAG---KAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYR---LAPEH 125
Query: 105 -FMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAG---AAAV 155
F + ++D + A +W+ D G P ++I G SAG AV
Sbjct: 126 PFPAAVEDGV----------AAYRWLLDQ----GFKPQHLSISGDSAGGGLVLAV 166
>2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor,
gibberellin, gibberellin signaling pathway, hydrolase,
nucleus, receptor, developmental protein; HET: GA3;
1.80A {Arabidopsis thaliana} PDB: 2zsi_A*
Length = 351
Score = 38.9 bits (91), Expect = 0.003
Identities = 25/148 (16%), Positives = 39/148 (26%), Gaps = 51/148 (34%)
Query: 41 IGSDNCLFLNVYTPKIDPNA---------------KLPVMVYIHGGAFKGGNT------R 79
I L VY P +PV+++ HGG+F +
Sbjct: 77 IDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDT 136
Query: 80 FLKEKFIMDKNIVYVAIQYR--------IGILGFMSFLDDVIPGNFGLKDQIFALKWVQD 131
+ + V V++ YR DD AL WV
Sbjct: 137 LCRR-LVGLCKCVVVSVNYRRAPENPYPCAY-------DDG----------WIALNWVNS 178
Query: 132 N--IAHFGGDPSRVTIFGGSAGA--AAV 155
+ + + G S+G A
Sbjct: 179 RSWLKSKKDSKVHIFLAGDSSGGNIAHN 206
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 38.7 bits (90), Expect = 0.003
Identities = 15/114 (13%), Positives = 34/114 (29%), Gaps = 23/114 (20%)
Query: 51 VYTPKIDPNAKLPVMVYIHGGAFKGGNTRFLKE-KFIMDKNIVYVAIQYR-----IGILG 104
+ TP +P ++++HG G L + + + + R +
Sbjct: 22 LLTPT-----GMPGVLFVHGWG--GSQHHSLVRAREAVGLGCICMTFDLRGHEGYASMRQ 74
Query: 105 FMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYL 158
++ ++ D A + + D + + G S G L
Sbjct: 75 SVTRAQNL-------DDIKAAYDQL---ASLPYVDAHSIAVVGLSYGGYLSALL 118
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 38.6 bits (89), Expect = 0.004
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 16/129 (12%)
Query: 58 PNAKLPVMVYIHGGAFKGGNTRFLKEKFIMDKNIVYVAIQYRIGILGFMSFLDDVIPGNF 117
P ++ I G GG + + +A+ Y + +D++
Sbjct: 154 GPGPFPGIIDIFGI---GGGLLEYRASLLAGHGFATLALAYYNFE-DLPNNMDNI----- 204
Query: 118 GLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPLAKGLFHNAIIQGGT 177
L+ A+ ++ H + + G S GA L ++ K + I G
Sbjct: 205 SLEYFEEAVCYML---QHPQVKGPGIGLLGISLGADIC--LSMASFLKNVSATVSINGSG 259
Query: 178 A--TSPWAY 184
+ Y
Sbjct: 260 ISGNTAINY 268
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 37.9 bits (88), Expect = 0.008
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 51 VYTPK-----IDPNAKLPVMVYIHGG-AFKGGNTRFLKEKFIMDKNIVYVAIQYRIGILG 104
+Y P + P +V HGG + L + + I + Y G G
Sbjct: 408 IYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYG-GSTG 466
Query: 105 F-MSFLDDVIPGNFGLKDQ---IFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVI 160
+ ++ + + G +G+ D + D +R+ + GGSAG ++
Sbjct: 467 YGRAYRERLR-GRWGVVDVEDCAAVATAL---AEEGTADRARLAVRGGSAGGWTAASSLV 522
Query: 161 SPLAKGLFHNAIIQGG 176
S ++ +
Sbjct: 523 ST---DVYACGTVLYP 535
>3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus
subsp}
Length = 326
Score = 37.4 bits (87), Expect = 0.009
Identities = 12/109 (11%), Positives = 24/109 (22%), Gaps = 28/109 (25%)
Query: 51 VYTPKIDPNAKLPVMVYIHGGAFKGGNT---RFLKEKFIMDKNIVYVAIQYRIGILG--- 104
+ + + ++YIHGG + L +K + V Y
Sbjct: 88 RFNFRHQID---KKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYP---KTPEF 141
Query: 105 -FMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGA 152
+ + V + G +G
Sbjct: 142 HIDDTFQAIQR----------VYDQLVS-----EVGHQNVVVMGDGSGG 175
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 36.6 bits (84), Expect = 0.011
Identities = 20/156 (12%), Positives = 47/156 (30%), Gaps = 19/156 (12%)
Query: 58 PNAKLPVMVYIHGGAFKGGNTRFLKEKFIMDKNIVYVAIQYR--------IGILGFMSFL 109
P A +++ +HG + L + ++ + +A ++
Sbjct: 20 PEAPKALLLALHGLQGSKEHILALLPGYA-ERGFLLLAFDAPRHGEREGPPPSSKSPRYV 78
Query: 110 DDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPLAKGLFH 169
++V G K++ + + + + GGS GA L+
Sbjct: 79 EEVYRVALGFKEEARRVAEEAERR-----FGLPLFLAGGSLGAFVAHLLLAEGFR---PR 130
Query: 170 NAIIQGGTATSPWAYIPQTVAKQRAEAVATLLGCPS 205
+ G+ +PQ + +A P+
Sbjct: 131 GVLAFIGSG--FPMKLPQGQVVEDPGVLALYQAPPA 164
>1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha
sandwich, PSI, protein structure initiative; 1.50A
{Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A
3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B*
Length = 318
Score = 34.4 bits (79), Expect = 0.069
Identities = 23/148 (15%), Positives = 36/148 (24%), Gaps = 37/148 (25%)
Query: 51 VYTPKIDPNAKLPVMVYIHGGAFKGGNTRFLKEKFIMDKNIVYVAIQ--YRIGILGFMSF 108
P P +V HG + + + Y R G
Sbjct: 73 YAVPD--KEGPHPAIVKYHGY---NASYDGEIHEMVNWALHGYATFGMLVR-GQQRSEDT 126
Query: 109 LDDVIPGNFG-------LKDQIFALKWVQDNI-------AHFGGDPSRVTIFGGSAG--- 151
G KD + D + + D +R+ + GGS G
Sbjct: 127 SISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGL 186
Query: 152 ------------AAAVDYLVISPLAKGL 167
AA DY +S + +
Sbjct: 187 TIAAAALSDIPKAAVADYPYLSNFERAI 214
>1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive
mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP:
c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A*
Length = 297
Score = 33.1 bits (75), Expect = 0.16
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 11/123 (8%)
Query: 49 LNVYTPK-IDPNAKLPVMVYIHG--GAFKGGNTRFLKEKFIMD--------KNIVYVAIQ 97
LNVY P DPN K + +HG + +K + I+D + ++ V
Sbjct: 55 LNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPT 114
Query: 98 YRIGILGFMSFLDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDY 157
+ G +F + + ++ G + G Y
Sbjct: 115 FNGGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWY 174
Query: 158 LVI 160
+++
Sbjct: 175 VMV 177
>1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP:
c.69.1.16
Length = 262
Score = 33.1 bits (75), Expect = 0.17
Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 12/107 (11%)
Query: 50 NVYTPKIDPNAKLPVMVYIHGGAFKGGNTRFLKEKFIMDKNIVYVAIQYRIGILGFMSFL 109
+Y P + +V G + +L + + V I + L
Sbjct: 42 TIYYPTSTADGTFGAVVISPGFTAYQSSIAWLGPRL-ASQGFVVFTIDTN-------TTL 93
Query: 110 DDVIPGNFGLKDQIFALKWVQDNIAHFGG-DPSRVTIFGGSAGAAAV 155
D P + G + + AL ++ + D +R+ + G S G
Sbjct: 94 DQ--PDSRG-RQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGS 137
>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR
structure initiative, PSI, joint center for structural
GENO hydrolase; 2.10A {Thermotoga maritima} SCOP:
c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*
Length = 337
Score = 33.0 bits (75), Expect = 0.18
Identities = 31/178 (17%), Positives = 47/178 (26%), Gaps = 31/178 (17%)
Query: 51 VYTPKIDPNAKLPVMVYIHGGAFKGGNTRFLKEKFIMDKNIVYVAIQYR-IGILGFMSFL 109
+ PK KLP +V G GG F + + R G
Sbjct: 85 LLVPK-LEEEKLPCVVQYIGYN--GGRGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDT 141
Query: 110 DDVIPGNFGLKDQIFALKWVQDNIAHFGG-------------------DPSRVTIFGGSA 150
D G + F + + D ++ D R+ I GGS
Sbjct: 142 PDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQ 201
Query: 151 G------AAAVD--YLVISPLAKGLFHNAIIQGGTATSPWAYIPQTVAKQRAEAVATL 200
G +A+ + L H T P+A I + R +
Sbjct: 202 GGGIALAVSALSKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVF 259
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 32.5 bits (74), Expect = 0.27
Identities = 24/174 (13%), Positives = 41/174 (23%), Gaps = 36/174 (20%)
Query: 59 NAKLPVMVYIHGGAFKGGNTRFLKEKFIM-DKNIVYVAIQYRIGILGFMSFLDDVIPGNF 117
K P ++ HG N+ +K VA+ R G G + V
Sbjct: 105 EGKHPALIRFHGY---SSNSGDWNDKLNYVAAGFTVVAMDVR-GQGGQSQDVGGVTGNTL 160
Query: 118 G---------LKDQIFALKWVQDNIA-------HFGGDPSRVTIFGGSAG---------- 151
D + D D RV + G S G
Sbjct: 161 NGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAAL 220
Query: 152 -----AAAVDYLVISPLAKGLFHNAIIQGGTATSPWAYIPQTVAKQRAEAVATL 200
+Y +S + + + + + ++ E L
Sbjct: 221 EPRVRKVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKL 274
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron
aquisition, structural genomics, PSI-2, protein
structure initiative; HET: CIT; 1.80A {Shigella flexneri
2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A*
3c8h_A 3mga_A*
Length = 403
Score = 32.7 bits (74), Expect = 0.28
Identities = 28/182 (15%), Positives = 56/182 (30%), Gaps = 38/182 (20%)
Query: 8 LQDPQPHPGWSDTKNATEHGNECPQRNYFNHQLIGSDNCLFLNVYTPKIDPNAKLPVMVY 67
+ PGW D A + + + + + ++ ++T + P+ V
Sbjct: 149 MPQAPLQPGW-DCPQAP-EIP--AKEIIWKSERLKNSRRVW--IFTTGDVTAEERPLAVL 202
Query: 68 IHGGAFKG-GNTRFLKEKFIMDKNI---VYVAI-----QYRIGILG----FMSFL-DDVI 113
+ G + + + + VYV I +R L F + +++
Sbjct: 203 LDGEFWAQSMPVWPVLTSLTHRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELL 262
Query: 114 PGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGA-AAVDYLVISPLAKGLFHNAI 172
P V+ A F R + G S G +A+ + P F +
Sbjct: 263 P-------------LVKVI-APFSDRADRTVVAGQSFGGLSALYAGLHWP---ERFGCVL 305
Query: 173 IQ 174
Q
Sbjct: 306 SQ 307
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 32.3 bits (73), Expect = 0.30
Identities = 15/115 (13%), Positives = 29/115 (25%), Gaps = 10/115 (8%)
Query: 54 PKIDPNAKLPVMVYIHGGAFKGGNTRFLK-EKFIMDKNIVYVAIQYRIGILGFMSFLDDV 112
PK + K ++ G F F +++ +G L
Sbjct: 27 PKENVPFKNNTILIASG--FARRMDHFAGLAEYLSTNGFHVFRYDSL-HHVG----LSSG 79
Query: 113 IPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAVDYLVISPLAKGL 167
F + +L V + G + + S A ++ L
Sbjct: 80 SIDEFTMTTGKNSLCTVYHWLQTKG--TQNIGLIAASLSARVAYEVISDLELSFL 132
>2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic
DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38
PDB: 2gzr_A*
Length = 278
Score = 31.5 bits (71), Expect = 0.60
Identities = 26/178 (14%), Positives = 46/178 (25%), Gaps = 28/178 (15%)
Query: 49 LNVYTPK-IDPNAKLPVMVYIHGGAFKGGNTRFLKEKFIMDKNIVYVAIQYRIGILGFMS 107
+ P P + P++ + G A L ++ V VA+ Y+ + ++
Sbjct: 29 VWTAVPNTTAPASGYPILYMLDGNAVMDRLDDELLKQLSEKTPPVIVAVGYQTNLPFDLN 88
Query: 108 ----------------FLDDVIPGNFGLKDQI--FALKWVQDNIA-HFGGDPSRVTIFGG 148
G + + + D R ++G
Sbjct: 89 SRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGH 148
Query: 149 SAGAAAVDYLVISPLAKGLFHNAIIQGGTATSPWAYIPQTVAKQRAEAVATLLGCPSK 206
S G V +S F + + SP R AV L C
Sbjct: 149 SYGGLFVLDSWLSS---SYFRSYY-----SASPSLGRGYDALLSRVTAVEPLQFCTKH 198
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 31.1 bits (70), Expect = 0.86
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 17/89 (19%)
Query: 391 THLRGPSHGEEIVYFFNDI--IPNFELTPEEHKLSHRLLDLWTSFASTGVPS-----DTW 443
+L GPS EI + ++ IP +E D S GV + D
Sbjct: 436 KNLLGPSILNEIYVYDGNVIGIPESFDGVKE-----EFKDFLEKGKSEGVATGIRYIDAL 490
Query: 444 TPVASDRIEYLHMTNDG-----FKMARGL 467
+ ++E ++N + R L
Sbjct: 491 CFKITSKLEEAFVSNTTEFKVKVPIVRSL 519
>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas
mendocina}
Length = 258
Score = 30.4 bits (68), Expect = 1.1
Identities = 14/107 (13%), Positives = 29/107 (27%), Gaps = 12/107 (11%)
Query: 51 VYTPKI--DPNAKLPVMVYIHGGAFKGGNTRFLKEKFIMDKNIVYVAIQYRIGILGFMSF 108
+Y P+ + PV+++ +G L + +V A +
Sbjct: 36 IYRPRDLGQGGVRHPVILWGNGTGAGPSTYAGLLSHWASHGFVV-AAAETS-----NAGT 89
Query: 109 LDDVIPGNFGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAGAAAV 155
+++ D + + RV G S G
Sbjct: 90 GREMLACL----DYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGS 132
>1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl
esterase, ferulic acid esterase, FAE_XYNZ, XYNZ,
structural genomics; 1.75A {Clostridium thermocellum}
SCOP: c.69.1.2 PDB: 1jt2_A*
Length = 268
Score = 30.5 bits (69), Expect = 1.2
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 9/49 (18%)
Query: 49 LNVYTPK-IDPNAKLPVMVYIHGGAFKGGN-----TRFLKEKFIMDKNI 91
VY P + K V+ +HG GG+ + I D I
Sbjct: 48 ARVYLPPGYSKDKKYSVLYLLHGI---GGSENDWFEGGGRANVIADNLI 93
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 30.7 bits (69), Expect = 1.3
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 17/89 (19%)
Query: 391 THLRGPSHGEEIVYFFNDI--IPNFELTPEEHKLSHRLLDLWTSFASTGVPS-----DTW 443
+L GPS EI + ++ IP +E D S GV + D
Sbjct: 436 KNLLGPSILNEIYVYDGNVIGIPESFDGVKE-----EFKDFLEKGKSEGVATGIRYIDAL 490
Query: 444 TPVASDRIEYLHMTNDG-----FKMARGL 467
+ ++E ++N + R L
Sbjct: 491 CFKITSKLEEAFVSNTTEFKVKVPIVRSL 519
>2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation,
hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum}
SCOP: c.69.1.37 PDB: 2d80_A*
Length = 318
Score = 29.4 bits (65), Expect = 2.4
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 133 IAHFGGDPSRVTIFGGSAGAA 153
+ F +P+ V++ G ++G
Sbjct: 3 LPAFNVNPNSVSVSGLASGGY 23
>1zo0_A ODC-AZ, ornithine decarboxylase antizyme; ornithine decarboxylase
inhibitor, lyase inhibitor; NMR {Rattus norvegicus}
SCOP: d.108.1.7
Length = 126
Score = 28.5 bits (63), Expect = 2.5
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 247 SFMGAGAVVPDHPLALPPNPVNIILGYN 274
SF+G V P HPL P P + Y
Sbjct: 98 SFLGFEIVRPGHPLV-PKRPDACFMVYT 124
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 29.4 bits (67), Expect = 2.8
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 243 PITDSFMGAGAVVPDHPLALPPNPVNIILG-YNSYEGNM 280
P+ +++ G + H L + G N
Sbjct: 246 PVITTYIAKGVLPVGHELNYGAVTGY-MDGILNFPALQT 283
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 29.4 bits (67), Expect = 3.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 243 PITDSFMGAGAVVPDHPLAL 262
P+ + GAG H LA+
Sbjct: 235 PVVTTSTGAGVFPETHALAM 254
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold,
nucleotidyl transferase, structural genomic protein
structure initiative; HET: APK MSE; 2.40A {Mycobacterium
tuberculosis}
Length = 310
Score = 29.1 bits (66), Expect = 3.5
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 354 GHPSFKAALNYYKKVPLYFYLYDI 377
G PSF N + + F+ +D+
Sbjct: 89 GVPSFSQMQNRGRDTRVEFWAFDL 112
>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal
hydrolase; HET: PE4; 1.76A {Thermobifida alba}
Length = 306
Score = 28.9 bits (64), Expect = 3.6
Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 24/141 (17%)
Query: 50 NVYTPKIDPNAKLPVMVYIHGGAFKGGNTRFLKEKFIMDKNIVYVAIQYRIGILGFMSFL 109
+Y P+ N + G + +L E+ +V +AI + S
Sbjct: 86 TIYYPR--ENNTYGAIAISPGYTGTQSSIAWLGERIASHGFVV-IAIDTNTTLDQPDSRA 142
Query: 110 DDVIPGNFGLKDQIFALKWV-QDNIAHFGG--DPSRVTIFGGSAGAAAVDYLVISPLAKG 166
+ AL ++ D + D SR+ + G S G +
Sbjct: 143 RQLN----------AALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGT--------LRL 184
Query: 167 LFHNAIIQGGTATSPWAYIPQ 187
++ +PW
Sbjct: 185 ASQRPDLKAAIPLTPWHLNKS 205
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 28.9 bits (64), Expect = 4.3
Identities = 18/150 (12%), Positives = 49/150 (32%), Gaps = 16/150 (10%)
Query: 57 DPNAKLPVMVYIHGGAFKGGNTRFLKEKFIMDKNIVYVAIQYRIGILGFMSFLDDVIPGN 116
+ ++ + GG + ++ + + + + G +
Sbjct: 154 SEDKAQDTLIVVGGGDTSREDLFYMLGYSGWEHDYNVLMVDLP----GQGKNPNQ----- 204
Query: 117 FGLKDQIFALKWVQDNIAHFGGDPSRVTIFGGSAG------AAAVDYLVISPLAKGLFHN 170
GL ++ A + + + ++ I G S G A D + + +A ++
Sbjct: 205 -GLHFEVDARAAISAILDWYQAPTEKIAIAGFSGGGYFTAQAVEKDKRIKAWIASTPIYD 263
Query: 171 AIIQGGTATSPWAYIPQTVAKQRAEAVATL 200
+ S P+T+ K ++ V ++
Sbjct: 264 VAEVFRISFSTALKAPKTILKWGSKLVTSV 293
>3q31_A Carbonic anhydrase; glysosy secreted, dimeric, lyase; HET: NAG;
2.70A {Aspergillus oryzae}
Length = 244
Score = 28.6 bits (64), Expect = 4.6
Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 19/114 (16%)
Query: 37 NHQLIGSDNCLFLNVYTPKIDP----NAKLPVMVYIHGGAFKGGNTRF-LK--------- 82
+ I L + P D N + V + G+ + + L
Sbjct: 44 DSAAIDYAASGSLKLDLPLADGSKLENLGFGLQVTLTNGSLTANSKTYTLAQFHFHTPSE 103
Query: 83 -----EKFIMDKNIVYVAIQYRIGILGFMSFLDDVIPGNFGLKDQIFALKWVQD 131
E F M+ + V+ ++GF L +V + + D
Sbjct: 104 HHVNEEHFPMEVHFVFQTAAKETAVVGFFFQLSEVGDSVPLFDSVFAPIDNIPD 157
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A
{Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19
c.37.1.19
Length = 780
Score = 28.7 bits (65), Expect = 4.6
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 444 TPVASDRIEYLHMTNDGFKMARGLYED-RMR 473
A +R+ + + DGFK+A D + R
Sbjct: 698 GEEAMERLRFFTLNTDGFKIAE---YDLKTR 725
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 28.7 bits (65), Expect = 5.9
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 243 PITDSFMGAGAVVPDHPLAL 262
P+ ++ G V +P L
Sbjct: 240 PLMSTYPAKGIVADRYPAYL 259
>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.92A {Anabaena variabilis}
Length = 223
Score = 27.9 bits (62), Expect = 6.3
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 125 ALKWVQDNIAHFGGDPSRVTIFGGSAGAAAV 155
A W+ + +V FG S G A
Sbjct: 101 ATDWLT---HNPDTQHLKVGYFGASTGGGAA 128
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 28.1 bits (62), Expect = 7.5
Identities = 26/240 (10%), Positives = 60/240 (25%), Gaps = 46/240 (19%)
Query: 49 LNVYTPKIDPNAKLPVMVYIHG-GAFKGGNTRFLKEKFIMDKNIVYVAIQYRIGILGFMS 107
+ + + + PV++ G + + R ++ +I + +
Sbjct: 180 ITAHLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLA-KHDIAMLTVDMPSVGYSSKY 238
Query: 108 FLDDVIPGNFGLKDQIFALKWVQDNIAHFGG-DPSRVTIFGGSAGAAAVDYLVISPLAKG 166
L + D + V + + D RV + G G ++
Sbjct: 239 PLTE---------DYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGG----NAMVRLSF-- 283
Query: 167 LFHNAIIQGGTATSPWAYIPQTVAKQRAEAVATLLGCPSKPTTEALACMRDIPSDNFIIV 226
I+ + ++ + L + LA + +
Sbjct: 284 -LEQEKIKACVILGAPIHDIFASPQKLQQMPKMYL--------DVLASRLGKSVVDIYSL 334
Query: 227 TDKFLEWDLSPLG-------------------PFSPITDSFMGAGAVVPDHPLALPPNPV 267
+ + W L G P SP +D+ M A + +
Sbjct: 335 SGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAFFSTYGKAKKISSKTI 394
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 28.3 bits (64), Expect = 7.6
Identities = 2/20 (10%), Positives = 5/20 (25%)
Query: 243 PITDSFMGAGAVVPDHPLAL 262
P+ + G +
Sbjct: 234 PVFADYEGLSMLSGLPDAMR 253
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.435
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,002,290
Number of extensions: 507241
Number of successful extensions: 1353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1199
Number of HSP's successfully gapped: 116
Length of query: 494
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 397
Effective length of database: 3,993,456
Effective search space: 1585402032
Effective search space used: 1585402032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)