BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6001
(327 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|346473687|gb|AEO36688.1| hypothetical protein [Amblyomma maculatum]
Length = 350
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 131/269 (48%), Positives = 188/269 (69%), Gaps = 10/269 (3%)
Query: 62 EGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRK 121
EG +KP+ +K+ +WNVNG+RA + K +EY+ +E PDI A+Q+ +C + ++P K
Sbjct: 89 EGDKKPWN--LKLCSWNVNGVRAWLGKEG-LEYLKKEQPDIFAIQETKCSDSKLPPEM-K 144
Query: 122 SLSHYHMFWIGSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITV 178
S+ YH +++ D+ G GV LL K KPL VKYGI G+ ++ GRVITA+F +F + V
Sbjct: 145 SVEGYHSYFLAGDQEGYSGVALLAKIKPLDVKYGI-GMEKHDKEGRVITAEFDKFYLVAV 203
Query: 179 YVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKT 238
YVPN+G KL +D+RM WD+ F Y++ EL + ++++ GD+NV Q IDLANP N K
Sbjct: 204 YVPNAGKKLVRLDYRMEWDKDFRAYLK-ELEAKKHVVLCGDMNVAHQEIDLANPKTNKKN 262
Query: 239 AGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSE 298
AG+T EER F LL++G VD+FRHLYPD++GAYT+W++ +AR N GWRLDY ++S+
Sbjct: 263 AGFTQEERDGFTALLESGFVDSFRHLYPDKKGAYTFWTYM-MNARAKNVGWRLDYFILSK 321
Query: 299 QLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
LA+NI D +I S V GS HCPV+L L++
Sbjct: 322 ALASNISDSLIHSQVMGSDHCPVILLLNI 350
>gi|350410618|ref|XP_003489091.1| PREDICTED: recombination repair protein 1-like [Bombus impatiens]
Length = 334
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/258 (48%), Positives = 180/258 (69%), Gaps = 7/258 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+S+WNV+G+RA +KKN +EY+L+E+ DI+ALQ+ +C ++++PE + L+ YH +++
Sbjct: 82 LKISSWNVSGIRAVIKKNG-MEYMLKEDADIIALQETKCDKNKLPEEVK--LNGYHYYFL 138
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
S K G GV L TKEKP+ +KYG+ V + GR+ITA++ F + VYVPN+G KL
Sbjct: 139 ESKKPGYCGVALYTKEKPIDIKYGLDNVEFDSEGRLITAEYSNFYLVNVYVPNAGQKLIT 198
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ R+ W++ F Y+++ L +II GD+NV Q IDL NPD N K AG+T EER
Sbjct: 199 LPKRLKWNEAFKAYVKN-LDEKKPVIICGDMNVAHQKIDLKNPDTNKKNAGFTQEERSGM 257
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ LD G VD FR LYPD+EGAYT+WS+ +AR N GWRLDY LVSEQ+ +N+ D +I
Sbjct: 258 TDFLDAGFVDTFRALYPDKEGAYTFWSYF-ANARSKNIGWRLDYFLVSEQIKDNVCDNVI 316
Query: 310 RSDVQGSTHCPVVLRLSL 327
R +V GS HCP+VL +++
Sbjct: 317 RDEVYGSDHCPIVLYINI 334
>gi|340719564|ref|XP_003398220.1| PREDICTED: LOW QUALITY PROTEIN: recombination repair protein 1-like
[Bombus terrestris]
Length = 357
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/258 (48%), Positives = 179/258 (69%), Gaps = 7/258 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+S+WNV+G+RA +KKN +EY+L+E+ DI+ALQ+ +C ++++PE + L+ YH +++
Sbjct: 105 LKISSWNVSGIRAVIKKNG-MEYMLKEDADIIALQETKCDKNKLPEEVK--LNGYHYYFL 161
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
S K G GV L TKEKP+ +KYG+ V + GR+ITA++ F I VYVPN+G KL
Sbjct: 162 ESKKPGYCGVALYTKEKPIDIKYGLDNVEFDSEGRLITAEYSNFYLINVYVPNAGQKLIT 221
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ R+ W++ F Y+++ L +II GD+NV Q IDL NPD N K AG+T EER
Sbjct: 222 LPKRLKWNEAFKAYVKN-LDEKKPVIICGDMNVAHQKIDLKNPDTNKKNAGFTQEERSGM 280
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ LD G VD FR LYP++EGAYT+WS+ +AR N GWRLDY LVSEQ+ +N+ D +I
Sbjct: 281 TDFLDAGFVDTFRALYPNKEGAYTFWSYF-ANARSKNIGWRLDYFLVSEQIKDNVCDNVI 339
Query: 310 RSDVQGSTHCPVVLRLSL 327
R V GS HCP+VL +++
Sbjct: 340 RDKVYGSDHCPIVLYINI 357
>gi|340382054|ref|XP_003389536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Amphimedon queenslandica]
Length = 372
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 132/276 (47%), Positives = 191/276 (69%), Gaps = 14/276 (5%)
Query: 57 DISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVP 116
D +++GS P+T K S+WNVNG+RA +K + +EY+ +E PD+ +Q+ +C E ++P
Sbjct: 106 DAKNKDGS--PWTHKF--SSWNVNGVRAWLKASG-IEYVNQECPDVFCIQETKCSEKDLP 160
Query: 117 ESFRKSLSHYHMFWIGSD-KGQGGVGLLTKEKPLTVKYGI--PGVSNQRGRVITAKFKRF 173
+S + YH +W ++ KG G GL +KE+P+ V YGI P N+ GRVITA+F++F
Sbjct: 161 KS-ELEVPGYHSYWNSAEQKGYSGTGLYSKEEPINVTYGIGIPKHDNE-GRVITAEFEKF 218
Query: 174 TFITVYVPNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANP 232
F+T Y+PN+G KLK + +R+ WD F Y++S L N +++ GDLNV + ID+ANP
Sbjct: 219 YFVTAYIPNAGDKLKRLSYRVGEWDPDFKKYLKS-LDENKPVVLCGDLNVAHKEIDIANP 277
Query: 233 DKNVKTAGYTVEERRNFRELL-DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRL 291
N ++AG+T EER +F LL D L+D+FR LYPD++ AY+YWS+R+ +AR NNKGWRL
Sbjct: 278 KTNQRSAGFTKEERESFSSLLEDNKLIDSFRDLYPDKKEAYSYWSYRS-NARKNNKGWRL 336
Query: 292 DYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
DY LVSE+L + D IIRS V GS HCP+VL ++L
Sbjct: 337 DYFLVSERLKAAVCDSIIRSQVYGSDHCPIVLLVAL 372
>gi|443711514|gb|ELU05263.1| hypothetical protein CAPTEDRAFT_159745 [Capitella teleta]
Length = 307
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 181/274 (66%), Gaps = 8/274 (2%)
Query: 57 DISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVP 116
D S E ++ +K S+WNVNG+RA V+KN Y+ E+PDI +Q+ +C +D +P
Sbjct: 39 DYSSEAATKDGKKWNLKFSSWNVNGIRAWVEKNGH-SYVTAEDPDIFCVQETKCAKDLIP 97
Query: 117 ESFRKSLSHYHMFWIGSDK-GQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFT 174
+ ++ YH +W+ DK G G GL +K++PL+V YGI + + GRVITA+F +F
Sbjct: 98 DD--ANIEGYHAYWLSGDKDGYSGTGLYSKQEPLSVTYGIDKEEHDKEGRVITAEFDKFY 155
Query: 175 FITVYVPNSGIKLKAIDFRM-IWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPD 233
F+T YVPN+G L + +R WD F +Y+++ L + +++ GDLNV + ID+ANP
Sbjct: 156 FVTAYVPNAGRGLPRLSYRSEKWDPDFREYLKN-LDAKKPVVMCGDLNVAHKEIDIANPK 214
Query: 234 KNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDY 293
N K+AG+T +ER+ F ELL+ G VDAFR LYP+E Y+YW++ +AR N GWRLDY
Sbjct: 215 SNKKSAGFTPQERQGFSELLEAGFVDAFRELYPEETKKYSYWTYMG-NARGKNVGWRLDY 273
Query: 294 HLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+VSE++ + I D +IRS+V GS HCPVVL +++
Sbjct: 274 FVVSEKIKDGICDSLIRSEVMGSDHCPVVLLMNI 307
>gi|307212268|gb|EFN88076.1| Recombination repair protein 1 [Harpegnathos saltator]
Length = 327
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 202/336 (60%), Gaps = 18/336 (5%)
Query: 1 MKRSADVIQKSDDENQIPKKQVKFDISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISH 60
MK S+ + +D +++ K+ K + KK + +K+ DE KQ K D +
Sbjct: 1 MKESSRKKRGNDTDDEPAPKKAKNEPKESKKTNNETKSTTKKAKDE----PKQNKIDTNL 56
Query: 61 EE---GSRKPYTT----KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQED 113
+E KP +K+ TWNV+G+RA +KKN ++YI +E+ DI+ALQ+ +C +D
Sbjct: 57 DEIDFECMKPNVEGKEYNLKICTWNVSGIRAVIKKNG-LDYIAKEDADIIALQETKCGKD 115
Query: 114 EVPESFRKSLSHYHMFWIGSDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFK 171
++P+ + LS YH +++ S + G GV L KEKP++VKYG+ + + GR+I A+F
Sbjct: 116 KMPDEIK--LSGYHHYFLDSKQSGYCGVALFCKEKPVSVKYGLNNSNFDSEGRIIAAEFP 173
Query: 172 RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLAN 231
F + VYVPN+G KL + R+ W++ F YI+ EL +II GD+NV Q IDL N
Sbjct: 174 EFFMVNVYVPNAGQKLVTLPKRLEWNKIFKKYIE-ELDQKKPVIICGDMNVAHQEIDLKN 232
Query: 232 PDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRL 291
P N K AG+T EER + L G +D FR LYPD+EGAYT+WS+ +AR + GWRL
Sbjct: 233 PKTNTKNAGFTKEERDGMTDFLAAGFIDTFRLLYPDKEGAYTFWSYF-ANARNKDIGWRL 291
Query: 292 DYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
DY L SE++ N I D IIR V GS HCPV+L +L
Sbjct: 292 DYFLASERIKNKICDNIIRKQVYGSDHCPVILYANL 327
>gi|158298437|ref|XP_318609.4| AGAP009587-PA [Anopheles gambiae str. PEST]
gi|157013880|gb|EAA14571.4| AGAP009587-PA [Anopheles gambiae str. PEST]
Length = 606
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 165/256 (64%), Gaps = 5/256 (1%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG 132
K+S+WNV GLR+ V K +E+I E PDI+ +Q+ +C ED++P+ R + YH +W+
Sbjct: 355 KISSWNVAGLRSWVGKGG-LEFIEHEKPDILCVQETKCTEDQMPDEAR-HIKGYHPYWLC 412
Query: 133 SDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAID 191
G GV + +K+ P V YG+ +Q GR++TA++++F + VYVPN+G KL +
Sbjct: 413 KPGGHAGVAIYSKKMPFHVAYGLGDEEQDQDGRLLTAEYEKFYLVCVYVPNAGRKLVTLP 472
Query: 192 FRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRE 251
R+ W++ F+ Y++ +L + +I+ GD+NV + IDLANP N K AG+T EER E
Sbjct: 473 KRLRWNEKFHQYLR-DLDAKKPVILCGDMNVAHEEIDLANPKTNKKNAGFTPEEREGMTE 531
Query: 252 LLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRS 311
LL G VD FR LYPD GAYT+W++ AR N GWRLDY + SE+LA + D +IRS
Sbjct: 532 LLSYGFVDTFRKLYPDRTGAYTFWTYMG-GARAKNVGWRLDYFITSERLAGKVTDNVIRS 590
Query: 312 DVQGSTHCPVVLRLSL 327
V GS HCPV L L++
Sbjct: 591 QVFGSDHCPVTLFLNI 606
>gi|332024107|gb|EGI64323.1| Recombination repair protein 1 [Acromyrmex echinatior]
Length = 356
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 133/309 (43%), Positives = 192/309 (62%), Gaps = 16/309 (5%)
Query: 23 KFDISRKKKKMKRSADVIQKSDDENQIPKKQVKFDI--SHEEGSRKPYTTKVKVSTWNVN 80
K D S KK K +Q D N ++ F S++EG + +K+ TWNV+
Sbjct: 60 KSDDSSTSKKAKNEPKQMQNKTDTNL---DEIDFGCTKSNQEGKKH----NLKICTWNVS 112
Query: 81 GLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK-GQGG 139
G+RA +KK+ ++YI +E+ DI+ALQ+ +C + ++P+ + L YH +++ S K G G
Sbjct: 113 GIRAVIKKHG-LDYITKEDADIIALQETKCDKGKMPDEVK--LPGYHHYFLDSKKPGYCG 169
Query: 140 VGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQ 198
V L +KEKP++VKYG+ + + GR+IT +F F I VYVPN+G KL + R+ W++
Sbjct: 170 VALFSKEKPISVKYGLNDSTFDTEGRIITVEFPEFFVINVYVPNAGQKLVTLPKRLEWNK 229
Query: 199 HFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLV 258
F +I+ EL +II GD+NV Q IDL NP N K AG+T EER + + L G +
Sbjct: 230 LFKKHIE-ELDQKKPVIICGDMNVAHQEIDLKNPKTNTKNAGFTKEERNDMTDFLAAGFI 288
Query: 259 DAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTH 318
D FR LYP+ EGAYT+WS+ +AR N GWRLDY L+SE++ N + D IIR DV GS H
Sbjct: 289 DTFRSLYPEIEGAYTFWSYF-ANARSKNIGWRLDYFLISERIKNKVCDNIIRKDVYGSDH 347
Query: 319 CPVVLRLSL 327
CPV+L ++L
Sbjct: 348 CPVILYINL 356
>gi|328782712|ref|XP_623551.2| PREDICTED: recombination repair protein 1 [Apis mellifera]
Length = 346
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 126/291 (43%), Positives = 187/291 (64%), Gaps = 13/291 (4%)
Query: 39 VIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEE 98
+I K+D + ++ FD + Y +K+S+WNV+G+RA +KKN ++YI +E
Sbjct: 67 IINKTDTD----LNEINFDCLKLNATGNKYN--LKISSWNVSGIRAVIKKNG-IKYIAKE 119
Query: 99 NPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK-GQGGVGLLTKEKPLTVKYGIPG 157
+ DI+ALQ+ +C +++PE + L+ YH +++ S K G GV L TKEKP+ VKYG+
Sbjct: 120 DADIVALQETKCDSNKLPEEIK--LNGYHYYFLESKKSGYCGVALFTKEKPIDVKYGLNN 177
Query: 158 VS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIII 216
+ GR+ITA++ F I VYVPN+G KL + R+ W++ F Y+++ L +II
Sbjct: 178 SEFDNEGRLITAEYLNFYLINVYVPNAGQKLVTLPKRLKWNEIFKTYVRN-LDEKKPVII 236
Query: 217 SGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWS 276
GD+NV + IDL NP N+K AG+T+EER + L TG VD FR LYPD+ AYT+WS
Sbjct: 237 CGDMNVAHKEIDLRNPKTNIKNAGFTIEERDGMTDFLATGFVDTFRALYPDKTDAYTFWS 296
Query: 277 FRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ +AR N GWRLDY LVSE++ +N+ D +IR V GS HCP+VL +++
Sbjct: 297 YF-ANARSKNIGWRLDYFLVSERIKDNVCDNVIRDKVYGSDHCPIVLYINI 346
>gi|383862977|ref|XP_003706959.1| PREDICTED: recombination repair protein 1-like [Megachile
rotundata]
Length = 336
Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 117/258 (45%), Positives = 174/258 (67%), Gaps = 7/258 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+S+WNV+G+RA +KK+ +EYI++E+ DI+ALQ+ +C ++++PE + L YH +++
Sbjct: 84 LKISSWNVSGIRALIKKSG-MEYIMKEDADIVALQETKCDKNKLPEEVK--LKGYHHYFL 140
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
S K G GV L TK+KP+ ++YG+ + GR+ITA++ F F+ VYVPN+G KL
Sbjct: 141 DSKKAGYCGVALYTKQKPIDIQYGLKNSEFDDEGRLITAEYPNFYFLNVYVPNAGQKLVT 200
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ R+ W++ F Y++ +L +II GD+NV Q IDL NP N K AG+T EER
Sbjct: 201 LPKRLQWNEAFKSYVK-QLDEKKPVIICGDMNVAHQEIDLTNPKTNTKNAGFTKEEREGM 259
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ L G VD FR LYPD+ GAYT+WS+ +AR N GWRLDY LVSE++ N + D +I
Sbjct: 260 TDFLAAGFVDTFRSLYPDKTGAYTFWSYF-ANARSKNIGWRLDYFLVSEKIKNKVCDNVI 318
Query: 310 RSDVQGSTHCPVVLRLSL 327
R + GS HCP+VL +++
Sbjct: 319 RDKIYGSDHCPIVLFVNI 336
>gi|449664158|ref|XP_002161039.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Hydra
magnipapillata]
Length = 352
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/272 (43%), Positives = 178/272 (65%), Gaps = 17/272 (6%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRK------- 121
T+ +K+ +WNV GLRA V KN + Y++EE+PD++ LQ+ +C E+++P +
Sbjct: 85 TSTLKICSWNVAGLRAWVNKNG-LNYVIEEDPDVLCLQETKCTENDLPGQVLQMKNGPKV 143
Query: 122 ---SLSHYHMFWIGSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTF 175
S S Y+M+W + K G GV L K KPL V YG+ G+ + GR+ITA+F+++
Sbjct: 144 TNVSNSGYYMYWCNAKKKGCSGVSLWCKLKPLKVTYGL-GIKEHDSEGRLITAEFEKYYI 202
Query: 176 ITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKN 235
IT YVPNSG KL +D+R IW+ + +Y+ EL+ +I+ GD NV ID+ANP+ N
Sbjct: 203 ITTYVPNSGQKLIRLDYRRIWNTDYKNYV-GELKKKKPVIMCGDFNVAHTEIDIANPNSN 261
Query: 236 VKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHL 295
+ AG+T EER +F LL+ G +D FR L P++ GAYT+W++ +AR NKGWRLDY +
Sbjct: 262 KRNAGFTEEERSDFTALLEDGYIDTFRKLNPEKTGAYTFWTYM-MNARSKNKGWRLDYFI 320
Query: 296 VSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
V++ + ++I D +IRS V GS HCP+VL L++
Sbjct: 321 VTKDIEDDICDSVIRSSVMGSDHCPIVLNLAI 352
>gi|390176532|ref|XP_001356149.2| GA16470, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|388858703|gb|EAL33209.2| GA16470, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 648
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 165/259 (63%), Gaps = 11/259 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG 132
K+S+WNV GLRA +KK+ LEE PDI LQ+ +C D++PE + YH +W+
Sbjct: 397 KISSWNVAGLRAWLKKDGLQSLALEE-PDIFCLQETKCSNDQLPEELT-HVPGYHPYWLC 454
Query: 133 SDKGQGGVGLLTKEKPLTVKYGIPGVSNQR----GRVITAKFKRFTFITVYVPNSGIKLK 188
G GV + +K P+ V+YGI N+ GR+ITA++++F I VYVPNSG KL
Sbjct: 455 MPGGYAGVAIYSKIMPINVEYGI---GNEEFDDVGRMITAEYEKFYLINVYVPNSGRKLV 511
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
++ RM W++ F+ Y+Q +L + ++I GD+NV IDL NP N K AG+T EER
Sbjct: 512 NLEARMRWEKLFHSYVQ-KLDALKAVVICGDMNVSHNEIDLENPKTNTKNAGFTKEERDK 570
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL G VD FRHLYPD++GAYTYW++ + +AR N GWRLDY +VSE+ + D +
Sbjct: 571 MTELLGLGFVDTFRHLYPDKKGAYTYWTYMS-NARARNVGWRLDYCIVSERFVPRVVDHV 629
Query: 309 IRSDVQGSTHCPVVLRLSL 327
IR + GS HCP+ + L++
Sbjct: 630 IRKQLLGSDHCPITVFLNI 648
>gi|327278210|ref|XP_003223855.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Anolis carolinensis]
Length = 306
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 124/265 (46%), Positives = 170/265 (64%), Gaps = 8/265 (3%)
Query: 66 KPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSH 125
K YT +KV++WNV+G+RA VKK VE++ EENPDI+ LQ+ +C E ++P R +
Sbjct: 47 KKYT--LKVTSWNVDGIRAWVKKKG-VEWVSEENPDILCLQETKCAEKQLPADIRDLAEY 103
Query: 126 YHMFWIGSD--KGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPN 182
H +W S+ +G GV LL+K KPL VKYGI + + GRVITA+F + +T YVPN
Sbjct: 104 PHKYWACSEDKEGYSGVALLSKVKPLEVKYGIGEEEHDKEGRVITAEFPSYFLVTSYVPN 163
Query: 183 SGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYT 242
+G L +++R WD F Y++ L + +I+ GDLNV + IDL NP N K AG+T
Sbjct: 164 AGRGLVRLEYRQSWDVAFRSYLKG-LAARKPLILCGDLNVAHEEIDLKNPKGNKKNAGFT 222
Query: 243 VEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLAN 302
EER F +LL+ G VD FRHLYPD AYT+W++ +AR N GWRLDY +VS+ L
Sbjct: 223 PEERAGFTKLLEEGFVDTFRHLYPDTAYAYTFWTYM-MNARSKNVGWRLDYFVVSKDLQE 281
Query: 303 NIKDCIIRSDVQGSTHCPVVLRLSL 327
+I D IRS GS HCP+ L +++
Sbjct: 282 SICDSKIRSTALGSDHCPITLYIAV 306
>gi|327278208|ref|XP_003223854.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Anolis carolinensis]
Length = 314
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 124/265 (46%), Positives = 170/265 (64%), Gaps = 8/265 (3%)
Query: 66 KPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSH 125
K YT +KV++WNV+G+RA VKK VE++ EENPDI+ LQ+ +C E ++P R +
Sbjct: 55 KKYT--LKVTSWNVDGIRAWVKKKG-VEWVSEENPDILCLQETKCAEKQLPADIRDLAEY 111
Query: 126 YHMFWIGSD--KGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPN 182
H +W S+ +G GV LL+K KPL VKYGI + + GRVITA+F + +T YVPN
Sbjct: 112 PHKYWACSEDKEGYSGVALLSKVKPLEVKYGIGEEEHDKEGRVITAEFPSYFLVTSYVPN 171
Query: 183 SGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYT 242
+G L +++R WD F Y++ L + +I+ GDLNV + IDL NP N K AG+T
Sbjct: 172 AGRGLVRLEYRQSWDVAFRSYLKG-LAARKPLILCGDLNVAHEEIDLKNPKGNKKNAGFT 230
Query: 243 VEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLAN 302
EER F +LL+ G VD FRHLYPD AYT+W++ +AR N GWRLDY +VS+ L
Sbjct: 231 PEERAGFTKLLEEGFVDTFRHLYPDTAYAYTFWTYM-MNARSKNVGWRLDYFVVSKDLQE 289
Query: 303 NIKDCIIRSDVQGSTHCPVVLRLSL 327
+I D IRS GS HCP+ L +++
Sbjct: 290 SICDSKIRSTALGSDHCPITLYIAV 314
>gi|390176534|ref|XP_003736152.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858704|gb|EIM52225.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 675
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 165/259 (63%), Gaps = 11/259 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG 132
K+S+WNV GLRA +KK+ LEE PDI LQ+ +C D++PE + YH +W+
Sbjct: 424 KISSWNVAGLRAWLKKDGLQSLALEE-PDIFCLQETKCSNDQLPEELT-HVPGYHPYWLC 481
Query: 133 SDKGQGGVGLLTKEKPLTVKYGIPGVSNQR----GRVITAKFKRFTFITVYVPNSGIKLK 188
G GV + +K P+ V+YGI N+ GR+ITA++++F I VYVPNSG KL
Sbjct: 482 MPGGYAGVAIYSKIMPINVEYGI---GNEEFDDVGRMITAEYEKFYLINVYVPNSGRKLV 538
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
++ RM W++ F+ Y+Q +L + ++I GD+NV IDL NP N K AG+T EER
Sbjct: 539 NLEARMRWEKLFHSYVQ-KLDALKAVVICGDMNVSHNEIDLENPKTNTKNAGFTKEERDK 597
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL G VD FRHLYPD++GAYTYW++ + +AR N GWRLDY +VSE+ + D +
Sbjct: 598 MTELLGLGFVDTFRHLYPDKKGAYTYWTYMS-NARARNVGWRLDYCIVSERFVPRVVDHV 656
Query: 309 IRSDVQGSTHCPVVLRLSL 327
IR + GS HCP+ + L++
Sbjct: 657 IRKQLLGSDHCPITVFLNI 675
>gi|259047804|ref|ZP_05738205.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
gi|259035481|gb|EEW36736.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
Length = 254
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 116/259 (44%), Positives = 171/259 (66%), Gaps = 8/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K++TWNVNG+R+ + K A EY+LE NPDI+ LQ+ + Q+D+V S Y +F+
Sbjct: 1 MKLATWNVNGIRSVLNKGALQEYVLESNPDILCLQETKAQQDQV--ELGMEFSEYEVFFN 58
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + TKEKPL+V+YGI G+ +Q GRVITA++++F +TVY PN+ L
Sbjct: 59 SAVKKGYSGTAIFTKEKPLSVEYGI-GIEEHDQEGRVITAEYEKFYLVTVYTPNAKRDLS 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++R +W+ F +I+ +L +I GDLNV + IDLANP N AG+T EER
Sbjct: 118 RLEYRQVWEDDFLAFIK-KLEETKPVIFCGDLNVAHKEIDLANPKTNTMNAGFTKEERAK 176
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ++++ LVDAFR+LYPD GAY++WS+ AR N GWR+DY ++S+ L +++
Sbjct: 177 FDQVVNNDLVDAFRYLYPDTLGAYSWWSYMG-GARARNVGWRIDYFVISQPLTAFLQEVK 235
Query: 309 IRSDVQGSTHCPVVLRLSL 327
IRSDV GS HCPV +++ L
Sbjct: 236 IRSDVTGSDHCPVEMKIEL 254
>gi|170051904|ref|XP_001861978.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167872934|gb|EDS36317.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 340
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 117/274 (42%), Positives = 169/274 (61%), Gaps = 10/274 (3%)
Query: 55 KFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDE 114
K HE G VK+S+WNV GLR+ V+K C+E++ E PDI+ LQ+ +C ED+
Sbjct: 76 KLSFGHEGGE-----FNVKISSWNVAGLRSWVEK-GCLEFLEHEAPDILCLQETKCTEDQ 129
Query: 115 VPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRF 173
+PE R + YH +W+ G GV + +K+ P V YG+ ++ GR++TA++++F
Sbjct: 130 LPEEARH-IKGYHPYWLCKPGGYAGVAIYSKKMPFNVSYGLGDAEQDEDGRLLTAEYEKF 188
Query: 174 TFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPD 233
+ VYVPN+G KL + RM WD+ F Y++ +L + +I+ GD+NV IDLANP
Sbjct: 189 YLVCVYVPNAGRKLVTLPKRMRWDEKFLQYLR-DLDAKKPVILCGDMNVAHAEIDLANPK 247
Query: 234 KNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDY 293
N K AG+T EER LL G VD FR YP+++ AYT+W++ +AR N GWRLDY
Sbjct: 248 TNKKNAGFTQEERDGMTNLLSHGFVDTFRQRYPEQKAAYTFWTYMG-NARAKNVGWRLDY 306
Query: 294 HLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ SE+LA + D +IR V GS HCP+ L L+L
Sbjct: 307 FIASERLAGRVVDSVIRPGVYGSDHCPITLLLNL 340
>gi|391340077|ref|XP_003744372.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Metaseiulus occidentalis]
Length = 347
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 163/254 (64%), Gaps = 4/254 (1%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG 132
K+ TWNVNG+R+ +K N +EYI EE+ D+ LQ+ +C E+++P + F G
Sbjct: 96 KIVTWNVNGIRSWLK-NGGLEYIEEEDADVYCLQETKCSEEKLPPEVTNYKGYKSYFLAG 154
Query: 133 SDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAID 191
+G GVG+++++ PL V+YG+ + GRVIT +F+ F + YVPN+G L +D
Sbjct: 155 DKEGYSGVGIMSRKTPLNVEYGLSLEEHDSEGRVITLEFEEFFLVNSYVPNAGRGLVRLD 214
Query: 192 FRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRE 251
+R+ WD+ F Y+ L+ ++I++GDLNV IDL NP N K AG+T EER+ +
Sbjct: 215 YRLTWDRDFRKYLVG-LKKKKSVILTGDLNVAHNEIDLKNPKTNKKNAGFTEEERQGLTD 273
Query: 252 LLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRS 311
LL+ G VD FR LYP+ EGAYT+W++ +AR N GWRLDY +VSE L +N+ D IRS
Sbjct: 274 LLEEGFVDTFRKLYPEREGAYTFWTYM-MNARAKNVGWRLDYFIVSEDLIDNVIDNEIRS 332
Query: 312 DVQGSTHCPVVLRL 325
V GS HCPVVL L
Sbjct: 333 TVMGSDHCPVVLHL 346
>gi|328702292|ref|XP_001952290.2| PREDICTED: recombination repair protein 1-like [Acyrthosiphon
pisum]
Length = 317
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 192/306 (62%), Gaps = 10/306 (3%)
Query: 25 DISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRA 84
D S+K+ + D K Q+ Q+ FD E+ S K T +K+ +WNV GLRA
Sbjct: 19 DNSKKRVRNNDGDDSESKKSKSTQVDLNQINFDC--EKKSAKGLTWNLKIISWNVAGLRA 76
Query: 85 CVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK-GQGGVGLL 143
+KK+ VEY+ +E+PDI+ LQ+I+C E ++P+ + L Y ++ DK G GV L
Sbjct: 77 WLKKDV-VEYLKKEDPDIICLQEIKCTEKQMPDEAK--LPGYKIYINSGDKAGYSGVALY 133
Query: 144 TKEKPLTVKYG--IPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFY 201
+K KP++V+ G I + + GRVI A++++F ++ Y+PN+G LK + RM WD+ F
Sbjct: 134 SKTKPISVRMGKEIKDLDDNEGRVIEAEYEQFFLVSTYIPNAGAGLKTLPKRMKWDEAFR 193
Query: 202 DYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAF 261
Y++ EL + ++++GDLNV + ID+ANP N K+AG+T EER N LL+ G VD F
Sbjct: 194 KYLK-ELDTKKPVVLTGDLNVAHEEIDIANPKTNTKSAGFTKEERDNMSLLLEQGFVDTF 252
Query: 262 RHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPV 321
R L P++ GAYT+W++ + S R N GWRLDY + S++ +N+ D IR++V GS HCP+
Sbjct: 253 RTLNPEKTGAYTFWTYFHNS-RAKNVGWRLDYFITSKRFMDNVCDSTIRNEVLGSDHCPI 311
Query: 322 VLRLSL 327
V +++
Sbjct: 312 VFYINI 317
>gi|387015594|gb|AFJ49916.1| DNA-(apurinic or apyrimidinic site) lyase-like [Crotalus
adamanteus]
Length = 316
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/267 (44%), Positives = 171/267 (64%), Gaps = 8/267 (2%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S K YT +KV++WNV+G+RA VKK +E++ +E+PD++ LQ+ +C E ++P R
Sbjct: 55 SGKKYT--LKVTSWNVDGIRAWVKKKG-LEWVNKEDPDVLCLQETKCAEKQLPADIRDLA 111
Query: 124 SHYHMFWIGSD--KGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYV 180
+ H FW S+ +G GV LL+K KPL V YGI + + GRVITA+F + +T YV
Sbjct: 112 EYPHKFWACSNDKEGYSGVALLSKNKPLDVTYGIGEEEHDKEGRVITAEFSSYFLVTTYV 171
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F Y++ L + +I+ GDLNV Q IDL NP N K AG
Sbjct: 172 PNAGRGLVRLEYRQRWDEAFRSYLKG-LAARKPLILCGDLNVAHQEIDLKNPKGNKKNAG 230
Query: 241 YTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQL 300
+T EER F +LL+ G VD FRHLYP+ AYT+W++ +AR N GWRLDY +VS++L
Sbjct: 231 FTPEERAGFTQLLEAGFVDTFRHLYPNTPYAYTFWTYM-MNARAKNVGWRLDYFVVSKEL 289
Query: 301 ANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ D IRS GS HCP+ L +++
Sbjct: 290 QEGLCDSKIRSTALGSDHCPITLYVAM 316
>gi|374308939|ref|YP_005055370.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
gi|291165919|gb|EFE27966.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
Length = 251
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 119/257 (46%), Positives = 163/257 (63%), Gaps = 15/257 (5%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACVKK +++ E + DI LQ+ + QE ++ L YH +W
Sbjct: 1 MKLISWNVNGIRACVKK-GFLDFFKETDADIFCLQETKLQEGQI----ELELEGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ +Q GRVIT +F F +TVY PNS +L
Sbjct: 56 YAERKGYSGTAIFTKQEPLSVSYGL-GIEEHDQEGRVITLEFDNFYMVTVYTPNSKNELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSN--IIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
+D+RM+W+ F Y+ LR N +I+ GDLNV Q IDL NP N K AG+T+EER
Sbjct: 115 RLDYRMVWEDEFRSYL---LRLNETKPVIVCGDLNVAHQEIDLKNPKTNQKNAGFTIEER 171
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
LLD+G +D FR YP+ EGAY++WS+R +AR NN GWR+DY L S++L N+KD
Sbjct: 172 TKMSTLLDSGFIDTFRFFYPELEGAYSWWSYR-FNARKNNAGWRIDYFLTSQELKENLKD 230
Query: 307 CIIRSDVQGSTHCPVVL 323
I SD+ GS HCPV L
Sbjct: 231 AKIHSDILGSDHCPVEL 247
>gi|47213945|emb|CAF94476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/267 (43%), Positives = 166/267 (62%), Gaps = 6/267 (2%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
SR K+++WNV+GLRA VKK ++++ EENPD++ LQ+ +C E +P
Sbjct: 57 SRDGRDANTKITSWNVDGLRAWVKKKG-LDWVREENPDVLCLQETKCAEKSLPADITSMP 115
Query: 124 SHYHMFWIGSD--KGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYV 180
+ + +W GSD +G GV +L K +P+ V YGI + + GRVITA+F F +T YV
Sbjct: 116 EYPYKYWAGSDDKEGYSGVAMLCKTEPVKVTYGIGKEEHDKEGRVITAEFPGFFLVTAYV 175
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PNSG L +D+R WD F Y+ SEL +++ GDLNV Q IDL NP N K AG
Sbjct: 176 PNSGRGLVRLDYRKTWDADFRTYL-SELDVQKPVVLCGDLNVAHQEIDLKNPKGNKKNAG 234
Query: 241 YTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQL 300
+T EER F +LL+ G VD+FR LYP++ AY++W++ +AR N GWRLDY ++S L
Sbjct: 235 FTAEEREGFGQLLEAGFVDSFRELYPEQSHAYSFWTYM-MNARDKNVGWRLDYFVLSSSL 293
Query: 301 ANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ D IR+ V+GS HCP+ L +++
Sbjct: 294 LPGLCDSKIRNQVKGSDHCPITLHMAV 320
>gi|404371536|ref|ZP_10976840.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
gi|226912337|gb|EEH97538.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
Length = 251
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 167/259 (64%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+R+CV K +EY E + DI +Q+ + QE ++ L YH +W
Sbjct: 1 MKLISWNVNGIRSCVTK-GFLEYFKEMDADIFCIQESKLQEGQID----LELEGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKEKPL+V YG+ G+ ++ GRVIT +F+ F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKEKPLSVSYGL-GIEEHDKEGRVITLEFENFYMVTVYTPNSKNELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F DY++ L +I+ GDLNV + IDL NP N++ AG+T EER
Sbjct: 115 RLDYRMVWEDAFRDYLKV-LDEKKPVIVCGDLNVAHKEIDLKNPKTNLRNAGFTEEERSK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G VD FR+ YPDE GAY++WS+R +AR N GWR+DY LVS + + ++D
Sbjct: 174 FTELLNAGFVDTFRYFYPDEVGAYSWWSYRF-NARAKNAGWRIDYFLVSNSVKDKLEDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S+V GS HCPV L+++L
Sbjct: 233 IHSEVLGSDHCPVELKINL 251
>gi|260808574|ref|XP_002599082.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
gi|229284358|gb|EEN55094.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
Length = 272
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 119/261 (45%), Positives = 166/261 (63%), Gaps = 9/261 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+++WNV+GLR VKKN YI +E+PDI+ LQ+ +C E +VP+ F ++ YH +W
Sbjct: 14 LKIASWNVDGLRGTVKKNGHA-YIPQEDPDIICLQETKCTEKDVPKEFTATVEGYHGYWY 72
Query: 132 GSD--KGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKL 187
KG G LL+K KP+ V YGI GV + GRVITA+F F +T YVPN+G L
Sbjct: 73 SPTEKKGYAGTALLSKTKPIKVTYGI-GVDEHDDEGRVITAEFDDFYMVTAYVPNAGRGL 131
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEER 246
+D+R WD+ F Y++ +L +++ GDLNV IDL NP N KT G+T +ER
Sbjct: 132 VRLDYRGTWDEAFTAYLK-KLDKKKPVVLCGDLNVAHNEIDLKNPKGNKNKTPGFTDKER 190
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
F LLD G D++R LYP+E YT+WS+ AR N GWRLDY ++S++L + D
Sbjct: 191 EGFTTLLDEGFKDSYRELYPEETDCYTFWSYMG-GARAKNVGWRLDYFVLSDRLMPQLCD 249
Query: 307 CIIRSDVQGSTHCPVVLRLSL 327
+IRS+V GS HCP+VL L++
Sbjct: 250 NVIRSEVMGSDHCPIVLLLAM 270
>gi|242004144|ref|XP_002422991.1| Recombination repair protein, putative [Pediculus humanus corporis]
gi|212505907|gb|EEB10253.1| Recombination repair protein, putative [Pediculus humanus corporis]
Length = 332
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 185/316 (58%), Gaps = 12/316 (3%)
Query: 19 KKQVKFDISRKKKKMKRSADVIQKSDDENQIP--KKQVKFDI---SHEEGSRKPYTTKVK 73
K +VK D S K++ S V KS+ + P K FDI + S + K
Sbjct: 20 KAKVKKDDSDSSNKVETSGKVKGKSETSEKKPLNKIDTDFDIIDFKCAKNSSAGNSWNFK 79
Query: 74 VSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYH-MFWIG 132
+S+WNV L++ KN +EY+ E+PD+M Q+ +C E P + L YH F G
Sbjct: 80 ISSWNVVSLKSITNKNG-MEYVRRESPDVMCFQETKCSEKNAPSESK--LPGYHRYFAAG 136
Query: 133 SDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAID 191
+G GV L +K KPL+VK GI + GRVITA+++ F +T YVPN+G L +
Sbjct: 137 VKEGYAGVALYSKLKPLSVKIGIGHKEHDTEGRVITAEYEDFYLVTAYVPNAGRGLVTLP 196
Query: 192 FRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRE 251
R+ WD F Y++ +L S +I+ GDLNV IDL NP N KTAG+T EER F +
Sbjct: 197 KRLKWDVAFKGYLK-KLDSEKPVILCGDLNVAHNEIDLKNPSTNTKTAGFTQEERDGFTK 255
Query: 252 LLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRS 311
LL+ G +D FR LYP++EGAYTYW++ +AR N GWRLDY +VSE++ + + D +IR
Sbjct: 256 LLNAGFIDTFRKLYPNKEGAYTYWNYIG-NARSRNAGWRLDYFVVSERIMSTVCDSVIRK 314
Query: 312 DVQGSTHCPVVLRLSL 327
+V GS HCP+ L ++L
Sbjct: 315 EVYGSDHCPITLFVAL 330
>gi|148225041|ref|NP_001085229.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
laevis]
gi|47937489|gb|AAH72056.1| MGC78928 protein [Xenopus laevis]
Length = 316
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 166/260 (63%), Gaps = 8/260 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+S+WNV+G+RA +KK + ++ EE+P IM LQ+I+C E +P + + H +W
Sbjct: 61 LKISSWNVDGIRAWIKKQG-LNWVREEDPHIMCLQEIKCAEKLLPPDVKDMPEYPHKYWA 119
Query: 132 GSDKGQG--GVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKL 187
D+ +G GV +L K+KPL V YGI G+ ++ GRVITA+F F I Y+PNS L
Sbjct: 120 CPDEKEGYSGVAMLCKDKPLNVTYGI-GIEEHDKEGRVITAEFDSFFVIAAYIPNSSRGL 178
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+D+R WD F Y++ L S +I+ GDLNV Q IDL NP N KT G+T +ER+
Sbjct: 179 VRLDYRQRWDVDFRAYLKG-LDSKKPLILCGDLNVAHQEIDLKNPKTNKKTPGFTPQERQ 237
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
F ELL G +D+FR LYPD+ AYT+W++ +AR N GWRLDY ++S+ L + DC
Sbjct: 238 GFGELLAEGYLDSFRELYPDKPSAYTFWTYM-MNARAKNVGWRLDYFVLSKALRPALCDC 296
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
IRS V GS HCP+ L +++
Sbjct: 297 KIRSKVMGSDHCPITLLMAI 316
>gi|410918464|ref|XP_003972705.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Takifugu
rubripes]
Length = 314
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 164/257 (63%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+++WNV+GLRA VKK ++++ EENPD++ LQ+ +C E +P + +W
Sbjct: 59 MKITSWNVDGLRAWVKKKG-LDWVREENPDVLCLQETKCAEKSLPADITSMPEYPFKYWA 117
Query: 132 GSD--KGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLK 188
GSD +G GV +L+K +P+ V YGI + + GRVITA+F F +TVYVPNSG L
Sbjct: 118 GSDDKEGYSGVAMLSKTEPIKVTYGIGKEEHDKEGRVITAEFSSFFLVTVYVPNSGRGLV 177
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R WD F Y+ SEL +++ GDLNV Q IDL NP N K AG+T EER
Sbjct: 178 RLDYRKTWDVDFRTYL-SELDIQKPVVLCGDLNVAHQEIDLKNPKGNKKNAGFTAEEREG 236
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL+ G VD+FR LYP++ AY++W++ +AR N GWRLDY ++S L + D
Sbjct: 237 FSQLLEAGFVDSFRELYPEQTHAYSFWTYM-MNARDKNVGWRLDYFVLSSSLLPALCDSK 295
Query: 309 IRSDVQGSTHCPVVLRL 325
IR+ V+GS HCP+ L +
Sbjct: 296 IRNQVRGSDHCPITLHI 312
>gi|406882207|gb|EKD30059.1| hypothetical protein ACD_78C00169G0004 [uncultured bacterium (gcode
4)]
Length = 267
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 168/259 (64%), Gaps = 7/259 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNG+R+ + K +EY+ ENPDI+ LQ+++ E++ P F YH++W
Sbjct: 13 MKAVSWNVNGVRSVLTK-GFLEYLATENPDIIGLQEVKATEEQFPAGFDLQSMGYHIYWN 71
Query: 132 GSD-KGQGGVGLLTKEKPLTVKYGIPGV--SNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++ KG G + +K +P++V+YG+ G+ +Q GR+IT +F+++ F+TVY PN+ +L+
Sbjct: 72 AAERKGYSGTAVFSKVEPISVRYGL-GMKEHDQEGRIITLEFEKYFFVTVYTPNAKSELE 130
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++R +WD F+DY++ L +I+ GDLNV Q IDL NP N AG+T EER
Sbjct: 131 RLEYRQLWDSLFFDYLK-RLEVEKPVIVCGDLNVAHQEIDLTNPKPNRWNAGFTDEERAG 189
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F L G +D FRH YPD+ G YT+WS KS R N GWR+DY L+SE+L N+K
Sbjct: 190 FGHYLANGFIDTFRHFYPDKTGEYTWWSNFFKS-RDRNIGWRIDYFLISERLVTNLKSAF 248
Query: 309 IRSDVQGSTHCPVVLRLSL 327
IR +++GS HCPV +++ +
Sbjct: 249 IRQEIRGSDHCPVGIKIEI 267
>gi|198420194|ref|XP_002123983.1| PREDICTED: similar to APEX nuclease (multifunctional DNA repair
enzyme) 1 [Ciona intestinalis]
Length = 337
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 193/323 (59%), Gaps = 24/323 (7%)
Query: 9 QKSDDENQIPKKQVKFDISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPY 68
+ ++ EN + KK+ K + +K +K ++EN++ +K+++ ++
Sbjct: 34 EMAEAENVVEKKKAKEENGNGEK-------ATEKREEENKVVEKKLE--------TKDGR 78
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+K+S+WNV G+RA VKK+ V+++ E+PDI LQ+ +C E ++P+ K L YHM
Sbjct: 79 QFNLKISSWNVAGVRAWVKKDG-VKWVKGESPDIFTLQETKCSEKDIPQEL-KDLKEYHM 136
Query: 129 FW--IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSG 184
W S KG GVGL +K KPL VK+GI GV +Q GR ITA++ +F ++ YVPN+
Sbjct: 137 SWNVAKSTKGFSGVGLFSKVKPLEVKFGI-GVEEHDQEGRTITAEYDKFYLVSTYVPNAQ 195
Query: 185 IKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVE 244
LK +++R+ W+ F YI+S L +++ GD+NV IDLANP N K AG++ E
Sbjct: 196 RGLKRLEYRLKWNSDFLAYIKS-LDEKKPVVLCGDMNVSHHEIDLANPKGNKKNAGFSQE 254
Query: 245 ERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
ER ELL +G D +R LYPD G YT+W++ + R N GWRLDY ++S + +N+
Sbjct: 255 ERDGMTELLQSGFTDTYRDLYPDLTGQYTFWTYMG-NCRAKNVGWRLDYFILSNKWKDNV 313
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D II + GS HCP+ L L++
Sbjct: 314 CDNIIETSAMGSDHCPITLLLAV 336
>gi|260584873|ref|ZP_05852618.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
gi|260157530|gb|EEW92601.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
Length = 253
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 165/257 (64%), Gaps = 8/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K++TWNVNG+R+ + K A EY+LE PDI+ LQ+ + Q ++V + YH +W
Sbjct: 1 MKLTTWNVNGIRSVLNKGALQEYVLEAQPDILCLQETKAQPEQV--DLGMEFAGYHAYWN 58
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + TKE+P++V+YG+ G+ +Q GRVITA++ + +TVY PN+ L
Sbjct: 59 SAVKKGYSGTAIFTKEEPISVQYGL-GIEEHDQEGRVITAEYADYYLVTVYTPNAKRDLT 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +R +W+ F +I+ +L +I GDLNV + IDLANP N K AG+T EER
Sbjct: 118 RLSYRQVWEDDFLAFIK-KLEETKPVIFCGDLNVAHKEIDLANPKTNTKNAGFTKEEREK 176
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ++++ GLVDAFR YP+ GAYT+WS+ AR N GWR+DY +VSE L + I++
Sbjct: 177 FDQIVENGLVDAFRFRYPEAVGAYTWWSYMG-GARARNIGWRIDYFVVSEVLTSRIQEVK 235
Query: 309 IRSDVQGSTHCPVVLRL 325
IR+DV GS HCPV + +
Sbjct: 236 IRADVTGSDHCPVEMEI 252
>gi|157127237|ref|XP_001654881.1| ap endonuclease [Aedes aegypti]
gi|108872984|gb|EAT37209.1| AAEL010781-PA [Aedes aegypti]
Length = 612
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 162/257 (63%), Gaps = 7/257 (2%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG 132
K+S+WNV GLR+ V K +++ E PDI+ +Q+ +C +D++PE R + YH +W+
Sbjct: 361 KISSWNVAGLRSWVGKGG-LDFFEHEKPDILCIQETKCVDDQLPEEVR-HIKGYHPYWLC 418
Query: 133 SDKGQGGVGLLTKEKPLTVKYGIPGVSNQR--GRVITAKFKRFTFITVYVPNSGIKLKAI 190
G GV + +K+ P V YG+ G Q GR++TA++++F + VYVPN+G L +
Sbjct: 419 KPGGYAGVAIYSKKMPFNVTYGL-GDEEQDADGRLLTAEYEKFFLVCVYVPNAGRGLVTL 477
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
RM WD+ F+ Y++ +L + +I+ GD+NV + IDLANP N K AG+T EER
Sbjct: 478 PKRMRWDEKFHKYLK-DLDAKKPVILCGDMNVAHEEIDLANPKTNKKNAGFTPEEREGMT 536
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+LL G VD FR LYP++ GAYT+W++ +AR N GWRLDY + SE+ + D +IR
Sbjct: 537 KLLSLGFVDTFRQLYPEQSGAYTFWTYMG-NARAKNVGWRLDYFITSERFVGKVVDNVIR 595
Query: 311 SDVQGSTHCPVVLRLSL 327
S V GS HCP+ L L +
Sbjct: 596 SGVYGSDHCPLTLFLKV 612
>gi|345314093|ref|XP_001516262.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Ornithorhynchus anatinus]
Length = 320
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/268 (45%), Positives = 171/268 (63%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S +P T +K+ +WNV+GLRA VKK ++++ EE PDI+ LQ+ +C E ++P +
Sbjct: 58 SGQPAT--LKICSWNVDGLRAWVKKKG-LDWVREEAPDILCLQETKCAESKLPPELKDLS 114
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W +DK G GVGLL++ +PL+V YGI +Q GRVI A+F+ F +TVYV
Sbjct: 115 DFPHRYWAAPADKEGYSGVGLLSRRRPLSVSYGIGEEEHDQEGRVIVAEFEAFVLVTVYV 174
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PNSG L +D+R WDQ F ++Q++ + +++ GDLNV + IDL NP N K AG
Sbjct: 175 PNSGRGLVRLDYRQRWDQAFRRFLQAQA-ARKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 233
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL T L D+FRHLYP AYT+W++ +AR N GWRLDY L+S
Sbjct: 234 FTPQERQGFGELLGTVDLADSFRHLYPAAAYAYTFWTYM-MNARSKNVGWRLDYFLLSRA 292
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L ++ D IRS GS HCP+ L L+L
Sbjct: 293 LLPSLCDSKIRSAALGSDHCPITLYLAL 320
>gi|226467620|emb|CAX69686.1| APEX nuclease [Schistosoma japonicum]
Length = 319
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/308 (42%), Positives = 182/308 (59%), Gaps = 14/308 (4%)
Query: 29 KKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGS---RKPY--TTKVKVSTWNVNGLR 83
KK + K S D S D Q+ + + + + S KP T +K+ +WNVNG+R
Sbjct: 17 KKPRTKSSKDENLNSPDVEQLKTQNLNWCTKYPGSSPELAKPLSATWNLKLVSWNVNGIR 76
Query: 84 ACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK-GQGGVGL 142
A +K N +EYI +EN DI +Q+ +C ++P + L Y FW +DK G G L
Sbjct: 77 AVIK-NGGMEYIKKENADIFCIQETKCPLHKIPSEAK--LPSYQSFWSSADKAGYAGTAL 133
Query: 143 LTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFR-MIWDQHF 200
+K P V YGI V ++ GRVITA+F RF +T YVPN+G L + +R WD F
Sbjct: 134 FSKIAPKKVTYGIGRKVHDEEGRVITAEFDRFYLVTAYVPNAGQGLARLPYREKEWDPDF 193
Query: 201 YDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTG-LVD 259
+Y++ +L + +I+ GDLNV + IDLA PD N KTAG+T +ER F +LL + L+D
Sbjct: 194 LEYLR-KLDATKPVIVCGDLNVAHEEIDLARPDTNHKTAGFTDQERSGFTKLLSSANLID 252
Query: 260 AFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHC 319
+RH YPD AY++WS+R ARL N GWRLDY LVS+++ N+ D IR V GS HC
Sbjct: 253 TYRHFYPDRREAYSFWSYRT-GARLINNGWRLDYFLVSQRILANVGDQEIRCGVTGSDHC 311
Query: 320 PVVLRLSL 327
PVVL L +
Sbjct: 312 PVVLYLHI 319
>gi|229366136|gb|ACQ58048.1| DNA-apurinic or apyrimidinic site lyase [Anoplopoma fimbria]
Length = 310
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 162/259 (62%), Gaps = 6/259 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+++WNV+GLRA VKKN ++++ EE PD++ LQ+ +C E +P + H +W
Sbjct: 55 MKITSWNVDGLRAWVKKNG-LDWVREEAPDVLCLQETKCSEKALPAEITSMPEYPHKYWA 113
Query: 132 GSDKGQG--GVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLK 188
SD+ QG GV +L K +PL V YGI + + GRVITA+F F +T YVPNS L
Sbjct: 114 ASDEKQGYSGVAMLCKTEPLKVTYGIGKEEHDKEGRVITAEFPNFYLVTTYVPNSSKGLV 173
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R WD+ F Y+ SEL +++ GDLNV Q IDL NP N K AG+TVEER
Sbjct: 174 RLDYRKTWDEDFRAYL-SELDMQKPLVLCGDLNVAHQEIDLKNPKGNKKNAGFTVEEREG 232
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL +G D+FR LYP++ AYT+W++ S R N GWRLDY L+S L + D
Sbjct: 233 FGQLLGSGFADSFRELYPEQANAYTFWTYMMNS-RGKNVGWRLDYFLLSSSLLPGLCDSK 291
Query: 309 IRSDVQGSTHCPVVLRLSL 327
IRS GS HCP+ L +++
Sbjct: 292 IRSKALGSDHCPITLHIAV 310
>gi|432942680|ref|XP_004083030.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Oryzias latipes]
Length = 311
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 161/262 (61%), Gaps = 6/262 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+++WNV+GLRA VKK ++++ EE PD++ LQ+ +C E ++P + H
Sbjct: 53 SANMKITSWNVDGLRAWVKKGG-LDWVREEAPDVLCLQETKCAEKDLPAEITSMPEYPHK 111
Query: 129 FWIGSD--KGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGI 185
+W SD +G GV +L+K +PL V YGI + + GRVITA+F F +T YVPN+
Sbjct: 112 YWAVSDDKEGYSGVAMLSKTEPLKVTYGIGKEEHDKEGRVITAEFPTFFLVTAYVPNASR 171
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +D+R WD F Y+ +EL +++ GDLNV Q IDL NP N K AG+T EE
Sbjct: 172 GLVRLDYRKTWDVDFQAYL-TELDVQKPLVLCGDLNVAHQEIDLKNPKGNKKNAGFTPEE 230
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +LL G VD+FR LYP++ AYT+W++ S R N GWRLDY L+S L +
Sbjct: 231 REGFSQLLAAGFVDSFRELYPEQANAYTFWTYMMNS-RAKNVGWRLDYFLLSSSLVPGLC 289
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D IR+ GS HCP+ L L++
Sbjct: 290 DSKIRNKAMGSDHCPITLHLAV 311
>gi|423076274|ref|ZP_17064987.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
gi|361852634|gb|EHL04857.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
Length = 250
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/256 (44%), Positives = 157/256 (61%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ +E DI LQ+ + QE+++P L YH +W
Sbjct: 1 MKLISWNVNGLRACLNK-GFMDFFQQEQADIFCLQETKLQEEQIP----FQLEGYHAYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K++PL+V YGI +Q GRVIT +F F +TVY PNS L
Sbjct: 56 FAQKKGYSGTAVFAKQEPLSVSYGIGQEEHDQEGRVITLEFDTFYLVTVYTPNSQRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RMIW+ F Y+++ L + +I+ GDLNV IDL NP N K AG+T EER F
Sbjct: 116 LDYRMIWEAEFLGYLKN-LEKSKPVILCGDLNVAHTEIDLKNPKTNRKNAGFTDEERAKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL G +D FRH PD++ AYT+WS+ +AR NN GWR+DY VSE L N +KD +I
Sbjct: 175 SELLKNGFIDTFRHFNPDKKEAYTWWSYM-FNARANNAGWRIDYFCVSESLKNELKDAMI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+ GS HCPV L +
Sbjct: 234 YDQIMGSDHCPVGLEI 249
>gi|317501545|ref|ZP_07959741.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088593|ref|ZP_08337504.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440482|ref|ZP_08620069.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
gi|316897056|gb|EFV19131.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407550|gb|EGG87050.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336012927|gb|EGN42818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
Length = 250
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 162/257 (63%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RACV+K +++ E + DI +Q+ + QE ++ L YH +W
Sbjct: 1 MKFVSWNVNGIRACVQK-GFLDFFTEADADIFCIQESKMQEGQL----ELDLPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YGI G+ +Q GRVIT +F+ F F+TVY PNS +L
Sbjct: 56 YAVKKGYSGTAVFTKKEPLSVTYGI-GIEEHDQEGRVITCEFEDFYFVTVYTPNSQNELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ +L +I++GD+NV + IDL NP N K AG+T EER
Sbjct: 115 RLDYRMRWEDDFRMYLK-KLEEKKPVIVTGDMNVAHKEIDLKNPKTNRKNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD G +D FR+ YPD EG Y++WS+R SAR N GWR+DY VSE L +KD
Sbjct: 174 FTELLDAGFIDTFRYFYPDREGIYSWWSYRF-SARAKNAGWRIDYFCVSESLKERLKDAK 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +DV GS HCP+ L +
Sbjct: 233 ILTDVMGSDHCPIELDM 249
>gi|153815015|ref|ZP_01967683.1| hypothetical protein RUMTOR_01232 [Ruminococcus torques ATCC 27756]
gi|145847583|gb|EDK24501.1| exodeoxyribonuclease III [Ruminococcus torques ATCC 27756]
Length = 252
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 162/257 (63%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RACV+K +++ E + DI +Q+ + QE ++ L YH +W
Sbjct: 3 MKFVSWNVNGIRACVQK-GFLDFFTEADADIFCIQESKMQEGQL----ELDLPGYHQYWN 57
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YGI G+ +Q GRVIT +F+ F F+TVY PNS +L
Sbjct: 58 YAVKKGYSGTAVFTKKEPLSVTYGI-GIEEHDQEGRVITCEFEDFYFVTVYTPNSQNELA 116
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ +L +I++GD+NV + IDL NP N K AG+T EER
Sbjct: 117 RLDYRMRWEDDFRMYLK-KLEEKKPVIVTGDMNVAHKEIDLKNPKTNRKNAGFTDEERGK 175
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD G +D FR+ YPD EG Y++WS+R SAR N GWR+DY VSE L +KD
Sbjct: 176 FTELLDAGFIDTFRYFYPDREGIYSWWSYRF-SARAKNAGWRIDYFCVSESLKERLKDAK 234
Query: 309 IRSDVQGSTHCPVVLRL 325
I +DV GS HCP+ L +
Sbjct: 235 ILTDVMGSDHCPIELDM 251
>gi|45361461|ref|NP_989307.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
gi|39794455|gb|AAH64266.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|51703687|gb|AAH80950.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|89267865|emb|CAJ83004.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
Length = 316
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 165/260 (63%), Gaps = 8/260 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+S+WNV+G+RA +KK + ++ EE+P IM LQ+I+C E +P + + H +W
Sbjct: 61 LKISSWNVDGIRAWIKKQG-LNWVREEDPHIMCLQEIKCAEKLLPPEIKDMPEYPHKYWA 119
Query: 132 GSDKGQG--GVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKL 187
D+ +G GV +L K+KPL V YGI G+ ++ GRVITA+F F I YVPNS L
Sbjct: 120 CPDEKEGYSGVAMLCKDKPLNVTYGI-GIEEHDKEGRVITAEFDSFFLIAAYVPNSSRGL 178
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+D+R WD F Y++ L S +I+ GDLNV Q IDL NP N KT G+T +ER+
Sbjct: 179 VRLDYRQRWDVDFRAYLKG-LDSKKPLILCGDLNVAHQEIDLKNPKTNKKTPGFTPQERQ 237
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
F ELL G +D+FR LYPD+ AYT+W++ +AR N GWRLDY ++S+ L + D
Sbjct: 238 GFGELLAEGYLDSFRELYPDKPSAYTFWTYM-MNARAKNVGWRLDYFVLSKALRPALCDS 296
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
+RS + GS HCP+ L +++
Sbjct: 297 KVRSKIMGSDHCPITLLMAI 316
>gi|89897437|ref|YP_520924.1| hypothetical protein DSY4691 [Desulfitobacterium hafniense Y51]
gi|219670588|ref|YP_002461023.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DCB-2]
gi|89336885|dbj|BAE86480.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540848|gb|ACL22587.1| exodeoxyribonuclease III Xth [Desulfitobacterium hafniense DCB-2]
Length = 250
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 115/256 (44%), Positives = 157/256 (61%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ +E DI LQ+ + QE+++P L YH +W
Sbjct: 1 MKLISWNVNGLRACLNK-GFMDFFQQEQADIFCLQETKLQEEQIP----FQLEGYHAYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K++PL+V YGI +Q GRVIT +F F +TVY PNS L
Sbjct: 56 FAQKKGYSGTAVFAKKEPLSVSYGIGQEEHDQEGRVITLEFDTFYLVTVYTPNSQRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RMIW+ F Y+++ L + +I+ GDLNV IDL NP N K AG+T EER F
Sbjct: 116 LDYRMIWEAEFLGYLKN-LEKSKPVILCGDLNVAHTEIDLKNPKTNRKNAGFTDEERAKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL G +D FRH PD++ AYT+WS+ +AR NN GWR+DY VSE L N +KD +I
Sbjct: 175 SELLKNGFIDTFRHFNPDKKEAYTWWSYM-FNARANNAGWRIDYFCVSESLKNELKDAMI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+ GS HCPV L +
Sbjct: 234 YDQIMGSDHCPVGLEI 249
>gi|197303592|ref|ZP_03168630.1| hypothetical protein RUMLAC_02320 [Ruminococcus lactaris ATCC
29176]
gi|197297326|gb|EDY31888.1| exodeoxyribonuclease III [Ruminococcus lactaris ATCC 29176]
Length = 250
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 164/257 (63%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACV+K +++ E + DI +Q+ + QE ++ L YH +W
Sbjct: 1 MKLISWNVNGIRACVQK-GFLDFFHEADADIFCIQETKMQEGQL----NLELERYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ +Q GRVIT +F+ F F+TVY PNS +L
Sbjct: 56 YAVKKGYSGTAVFTKKEPLSVSYGL-GIEEHDQEGRVITCEFEDFYFVTVYTPNSQSELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ +L +I++GDLNV + IDL NP N K AG+T EER
Sbjct: 115 RLDYRMKWEDDFRAYLK-KLEKKKPVIVTGDLNVAHKEIDLKNPKTNRKNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD G +D FR+ YPD+EG Y++WS+R SAR N GWR+DY VSE L + + D
Sbjct: 174 FTELLDAGFIDTFRYFYPDQEGIYSWWSYRF-SARAKNAGWRIDYFCVSECLKDRLADAK 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I ++V GS HCP+ L L
Sbjct: 233 ILTEVMGSDHCPIELDL 249
>gi|325970995|ref|YP_004247186.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
gi|324026233|gb|ADY12992.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
Length = 250
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/256 (45%), Positives = 161/256 (62%), Gaps = 8/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA ++K EY+ + N DI LQ+ + QED++ YH +W
Sbjct: 1 MKLVSWNVNGLRA-IQKKGFDEYLKQSNADIFCLQETKLQEDQIS----LVTEGYHTYWS 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G L +K++P++V+ GI + GR +TA+F++F + Y PNS L +
Sbjct: 56 FAEKKGYSGTALFSKQEPVSVQRGIGHPLDNEGRTVTAEFEQFYVVCCYTPNSQEALARL 115
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D RM WD+ F Y+ S L S +II GDLNV QSIDL +P N + AGY++EER F
Sbjct: 116 DTRMDWDEAFRSYVCS-LASMKPVIICGDLNVAHQSIDLRHPKANERNAGYSIEERNQFT 174
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
LLD G +D FR+LYP+ EG Y++WS+R K AR NN GWR+DY LVSE+L +I D I
Sbjct: 175 SLLDAGFIDTFRYLYPNREGIYSWWSYRFK-ARENNAGWRIDYWLVSEELRQSILDSTID 233
Query: 311 SDVQGSTHCPVVLRLS 326
++ QGS H PV+L L+
Sbjct: 234 TETQGSDHAPVILYLN 249
>gi|189238676|ref|XP_969559.2| PREDICTED: similar to ap endonuclease [Tribolium castaneum]
Length = 1246
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 165/256 (64%), Gaps = 6/256 (2%)
Query: 74 VSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGS 133
++TWNV+GLR+ +KK C++ + + PDI+ +Q+ +C ++PE K++ Y W S
Sbjct: 995 ITTWNVDGLRSWLKK-GCLDILKYDKPDILCIQETKCAVYKLPEEV-KTIEGYETLWCCS 1052
Query: 134 DK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAID 191
DK G GVG++ K+KPL V YGI + GR IT +++ F + VYVP++G L +
Sbjct: 1053 DKDGYAGVGIMVKDKPLNVIYGIDSKEHDTEGRCITVEYETFFVVNVYVPHAGRNLVTLP 1112
Query: 192 FRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRE 251
R+ W++ F +I++ L S +II GD+NV + IDLANP N +AG++VEER
Sbjct: 1113 KRLDWNEQFEKFIKN-LDSQKPVIICGDMNVAHKEIDLANPKTNTNSAGFSVEERDGMTA 1171
Query: 252 LLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRS 311
L G VD +RHLYP++E AYT+W + ++AR NN GWRLDY LVS++ +N+ D II S
Sbjct: 1172 FLGNGYVDIYRHLYPEKEKAYTFWIYM-RNARPNNVGWRLDYFLVSQRFVDNVCDNIIHS 1230
Query: 312 DVQGSTHCPVVLRLSL 327
DV GS HCP+ L + +
Sbjct: 1231 DVMGSDHCPLSLHIQI 1246
>gi|156362086|ref|XP_001625612.1| predicted protein [Nematostella vectensis]
gi|156212454|gb|EDO33512.1| predicted protein [Nematostella vectensis]
Length = 257
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 170/260 (65%), Gaps = 7/260 (2%)
Query: 70 TKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMF 129
+ K+++WNVNGLRA +K N+ ++ +E+PD+ +Q+ +C ++P+ + L+ YH +
Sbjct: 3 SNFKITSWNVNGLRAWLKNNS-KSFVSKEDPDVFCIQETKCALADIPKEAK--LAGYHCY 59
Query: 130 WIGSD-KGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKL 187
W ++ KG GVGL +K++P+ V YG+ + + GRVITA+++ F +T YVPNSG L
Sbjct: 60 WNSAEQKGYSGVGLCSKKEPIKVSYGMGNKEHDKEGRVITAEYEDFHLVTSYVPNSGRGL 119
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+ +R W++ F Y++ +L +I+ GDLNV + IDLANP N +TAG+T EER
Sbjct: 120 PRLGYRQQWNKDFLSYLK-KLDEIKPVILCGDLNVAHKDIDLANPKTNTRTAGFTKEERA 178
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
+F LL G D FR LYPD++ AYT+WS+ AR N GWRLDY +VS++L + D
Sbjct: 179 DFTTLLGEGFKDTFRELYPDKKSAYTFWSYMG-GARAKNVGWRLDYFVVSDRLVPKVCDS 237
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
IIRS V GS HCP+ L LS+
Sbjct: 238 IIRSRVMGSDHCPLSLLLSI 257
>gi|299821801|ref|ZP_07053689.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
gi|299817466|gb|EFI84702.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
Length = 254
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 166/258 (64%), Gaps = 8/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
++ +WNVNGLRA VKK +Y E + DI +Q+ + Q ++ + L YH +W
Sbjct: 1 MRFISWNVNGLRAAVKKGFS-DYFKEADADIFCVQETKLQAGQIE---LEGLEGYHDYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+PL+V+YG+P V NQ GRVIT +F F F+TVY PNS +LK
Sbjct: 57 YAVKKGYSGTAVFTKEEPLSVQYGLPEDVHNQEGRVITLEFPAFYFVTVYTPNSQAELKR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R W+Q F D+I + L ++ GDLNV Q IDL NP N K G++ +ER F
Sbjct: 117 LDYRTEWEQAFADHIIA-LDKQKPVVFCGDLNVAHQEIDLKNPKTNRKNPGFSDQERAMF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LLD G VD FR+LYP++E AY++WS+R +AR N GWR+DY +VS +L+++I++ I
Sbjct: 176 GQLLDNGFVDTFRYLYPEQEDAYSWWSYR-MNARSRNVGWRIDYFVVSSRLSDSIQEARI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
++V GS HCPV L +++
Sbjct: 235 HAEVLGSDHCPVELEIAI 252
>gi|291561139|emb|CBL39938.1| exodeoxyribonuclease III [butyrate-producing bacterium SS3/4]
Length = 284
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 117/254 (46%), Positives = 157/254 (61%), Gaps = 11/254 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRAC+ K +EY+ E + DI +Q+ + QE +V L YH +W
Sbjct: 36 KMISWNVNGLRACLGK-GFLEYLKESDADIFCIQESKLQEGQVD----LELPGYHQYWNY 90
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+P+ V YG+ G+ + GRVITA+F + +T Y PNS LK
Sbjct: 91 AEKKGYSGTAMFTKEEPIAVTYGL-GIEEHDHEGRVITAEFPEYYVVTCYTPNSQDGLKR 149
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y++ EL + +I GDLNV Q IDL NP N K AG++ EER F
Sbjct: 150 LDYRMQWEDAFRAYLK-ELETKKPVIFCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKF 208
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G VD FR+ YPD+EG Y++WS+R SAR N GWR+DY VSE L + + D I
Sbjct: 209 TELLEAGFVDTFRYFYPDQEGIYSWWSYRF-SARAKNAGWRIDYFCVSESLKDRLVDAKI 267
Query: 310 RSDVQGSTHCPVVL 323
++V GS HCPV L
Sbjct: 268 HTEVMGSDHCPVEL 281
>gi|344305891|ref|XP_003421623.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Loxodonta africana]
Length = 318
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 165/263 (62%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E ++P + H
Sbjct: 59 SATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSEKKLPAELQDLPGLSHQ 117
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W+ SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +TVYVPN+G
Sbjct: 118 YWLAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTVYVPNAGR 177
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +D+R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 178 GLVRLDYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYPD AYT+W++ +AR N GWRLDY L+S L +
Sbjct: 237 RQGFGELLQAVPLADSFRHLYPDTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPAL 295
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 296 CDSKIRSKALGSDHCPITLLLAL 318
>gi|407473575|ref|YP_006787975.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
gi|407050083|gb|AFS78128.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
Length = 250
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 168/257 (65%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACVKK ++Y + + DI LQ+ + QE ++ L Y +W
Sbjct: 1 MKLISWNVNGIRACVKK-GFLDYFTDIDADIFCLQETKLQEGQI----NLELEGYEQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK+KP+ VKYG+ G+ +Q GRVIT +F+ F + VY PNS +L
Sbjct: 56 YAVKKGYSGTAIFTKQKPIEVKYGL-GIEEHDQEGRVITLEFEDFYLVNVYTPNSQSELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F +Y++ +L + +I+ GDLNV + IDL NP N K AG+T EER
Sbjct: 115 RLDYRMKWEDIFREYLK-DLDNIKPVILCGDLNVAHKEIDLKNPKTNRKNAGFTDEERNK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL++G D+FR+LYP++EG+Y++WS+ K AR NN GWR+DY +VSE++ + IKD
Sbjct: 174 MTELLESGFTDSFRYLYPEKEGSYSWWSYMRK-ARENNSGWRIDYFIVSEKMKDKIKDAQ 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I S++ GS HCPV+L L
Sbjct: 233 IHSNIMGSDHCPVMLEL 249
>gi|320163204|gb|EFW40103.1| APEX nuclease [Capsaspora owczarzaki ATCC 30864]
Length = 429
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/279 (41%), Positives = 171/279 (61%), Gaps = 12/279 (4%)
Query: 52 KQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQ 111
K + + S + KP K++ WNVNGL+ +K+ C++Y+ E PD++ +Q+ +C
Sbjct: 160 KTLTYTTSRAAPNGKP--INFKIACWNVNGLKNAIKE-GCLQYLEYEKPDVLCIQETKCG 216
Query: 112 EDEVPESFRKSLSHYHMFWIGSDK-GQGGVGLLTKEKPLTVKYG--IPGVSNQRGRVITA 168
E E+P ++ Y+ +W + K G G G+ +K +P+ V +G +P + GRVITA
Sbjct: 217 EGEIPAD--SAVPGYYGYWYSAQKRGYAGTGMYSKTQPIRVSFGLNVPE-HDTEGRVITA 273
Query: 169 KFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSID 228
+F F +T YVPNSG KL+ + +R WD F Y+ S L + +++ GDLNV ID
Sbjct: 274 EFADFYLVTAYVPNSGQKLETLPYRQTWDVAFRTYLLS-LDAKKPVVLCGDLNVAHNEID 332
Query: 229 LANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKG 288
L NP N ++AG+T +ER F +L T VD+FR LYP EE AY++WS+R+ S R N G
Sbjct: 333 LKNPKTNKRSAGFTPQEREGFTTILGTEFVDSFRVLYP-EESAYSFWSYRHNS-RALNVG 390
Query: 289 WRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
WRLDY +VS++ ++ D IRS V GS HCP+VL LSL
Sbjct: 391 WRLDYFVVSQRFMQSVADSQIRSQVYGSDHCPIVLHLSL 429
>gi|331085596|ref|ZP_08334680.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330407483|gb|EGG86985.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 250
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 162/255 (63%), Gaps = 11/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RACV+K +++ E + DI +Q+ + QE ++ + L YH FW
Sbjct: 1 MKFISWNVNGIRACVQK-GFLDFFKEADADIFCIQESKMQEGQL----KLELEGYHQFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YGI G+ ++ GRVIT +F+ F F+TVY PNS +L
Sbjct: 56 YAERKGYSGTAIFTKQEPLSVAYGI-GMEEHDKEGRVITLEFEEFYFVTVYTPNSQNELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ +L + +I GDLNV + IDL NP N K AG+T EER
Sbjct: 115 RLDYRMQWETEFLKYLK-KLEAKKPVIFCGDLNVAHREIDLKNPKTNQKNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL G +D FR+ YP++EG Y++WS+R SAR N GWR+DY VSE L + ++D
Sbjct: 174 FTELLSAGFIDTFRYFYPEQEGIYSWWSYRF-SARAKNAGWRIDYFCVSECLKDRLRDAK 232
Query: 309 IRSDVQGSTHCPVVL 323
I +DV GS HCPV L
Sbjct: 233 ILTDVMGSDHCPVEL 247
>gi|325660677|ref|ZP_08149307.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
gi|325473038|gb|EGC76246.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
Length = 250
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 162/255 (63%), Gaps = 11/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RACV+K +++ E + DI +Q+ + QE ++ + L YH FW
Sbjct: 1 MKFISWNVNGIRACVQK-GFLDFFKEADADIFCIQESKMQEGQL----KLELEGYHQFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YGI G+ ++ GRVIT +F+ F F+TVY PNS +L
Sbjct: 56 YAERKGYSGTAIFTKQEPLSVAYGI-GMEEHDKEGRVITLEFEEFYFVTVYTPNSQNELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ +L + +I GDLNV + IDL NP N K AG+T EER
Sbjct: 115 RLDYRMQWETEFLKYLK-KLEAKKPVIFCGDLNVAHREIDLKNPKTNRKNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL G +D FR+ YP++EG Y++WS+R SAR N GWR+DY VSE L + ++D
Sbjct: 174 FTELLSAGFIDTFRYFYPEQEGIYSWWSYRF-SARAKNAGWRIDYFCVSECLKDRLRDAK 232
Query: 309 IRSDVQGSTHCPVVL 323
I +DV GS HCPV L
Sbjct: 233 ILTDVMGSDHCPVEL 247
>gi|392395397|ref|YP_006431999.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC
51507]
gi|390526475|gb|AFM02206.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC
51507]
Length = 250
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/256 (44%), Positives = 156/256 (60%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ +E DI LQ+ + QE+++P L Y+ +W
Sbjct: 1 MKLISWNVNGLRACLNK-GFMDFFEQEQADIFCLQETKLQEEQIP----FQLEGYYAYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK +PL+V YGI +Q GRVIT +F+ F +TVY PNS L
Sbjct: 56 FAQKKGYSGTAVFTKNEPLSVSYGIGKEEHDQEGRVITLEFETFYLVTVYAPNSQRGLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W++ F Y++S L + +I GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LDYRMTWEEEFLSYLKS-LEKSKPVIFCGDLNVAHTEIDLKNPKSNRKNAGFSDEERAKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL G +D FRH YPD+ +YT+WS+ +AR NN GWR+DY VSE L N +KD +I
Sbjct: 175 SGLLKNGFIDTFRHFYPDKTDSYTWWSYM-FNARTNNAGWRIDYFCVSESLKNELKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+ GS HCPV L +
Sbjct: 234 YDKIMGSDHCPVGLEI 249
>gi|444522078|gb|ELV13303.1| DNA-(apurinic or apyrimidinic site) lyase [Tupaia chinensis]
Length = 318
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 167/263 (63%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 59 SATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQ 117
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A+F +F +T YVPN+G
Sbjct: 118 YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDKFVLVTAYVPNAGR 177
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYPD AYT+W++ +AR N GWRLDY L+S+ L +
Sbjct: 237 RQGFGELLQAVPLTDSFRHLYPDTPYAYTFWTYM-MNARSKNVGWRLDYFLLSQSLLPAL 295
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 296 CDSKIRSKALGSDHCPITLYLAL 318
>gi|339443513|ref|YP_004709518.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
gi|338902914|dbj|BAK48416.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
Length = 289
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 161/257 (62%), Gaps = 9/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RACV K ++Y + DI LQ+ + QE ++ L Y +W
Sbjct: 40 MKFISWNVNGIRACVNK-GFLDYFHAADADIFCLQETKLQEGQLA----LDLEGYFQYWN 94
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+PL+V YG+ +Q GRVIT +++ F F+TVY PNS +LK
Sbjct: 95 YAEKKGYSGTAVFTKEEPLSVSYGLGIEAHDQEGRVITLEYETFYFVTVYTPNSQSELKR 154
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y+ L +I+ GD+NV Q IDL NP N K AG+T EER+ F
Sbjct: 155 LDYRMEWEDDFRAYLTG-LDREKPVIVCGDMNVAHQEIDLKNPKTNRKNAGFTDEERQKF 213
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELLD+G +D +R+ YPD+EG Y++WS+R K AR N GWR+DY LVS++L + + D I
Sbjct: 214 TELLDSGWIDTWRYFYPDQEGVYSWWSYRFK-AREKNAGWRIDYFLVSDRLKDRLTDAKI 272
Query: 310 RSDVQGSTHCPVVLRLS 326
++V GS HCPV L L+
Sbjct: 273 HTEVMGSDHCPVELDLN 289
>gi|340751024|ref|ZP_08687853.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
gi|229421274|gb|EEO36321.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
Length = 251
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 166/259 (64%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K ++Y E+ DI LQ+ + QE ++ L YH +W
Sbjct: 1 MKLISWNVNGLRACVGK-GFLDYFKEQQADIFCLQETKLQEGQI----ELELDGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKEKP++V YGI G+ ++ GRVIT +F++F ITVY PNS KL
Sbjct: 56 YAEKKGYSGTAIFTKEKPISVHYGI-GIEEHDKEGRVITLEFEKFYMITVYTPNSQEKLA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W++ F +Y+ EL +I+ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMKWEEDFKNYLL-ELDKKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFSDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LL++G VD+FR+ YP++ Y++WS+R SAR N GWR+DY LVS+++ N+K
Sbjct: 174 MTKLLESGFVDSFRYFYPNKTDIYSWWSYRF-SARAKNAGWRIDYFLVSDRIKENMKGAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCPV+L + L
Sbjct: 233 IHTEILGSDHCPVLLNIDL 251
>gi|317497391|ref|ZP_07955713.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
gi|316895311|gb|EFV17471.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
Length = 250
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 164/255 (64%), Gaps = 11/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RACVKK +++ E + DI +Q+ + QE ++ +L YH +W
Sbjct: 1 MKFISWNVNGIRACVKK-GFLDFFNETDADIFCIQESKMQEGQLD----LNLPEYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G G+ TKE+P++V YG+ G+ +Q GRVIT +FK + FITVY PNS +L
Sbjct: 56 YAVKKGYSGTGIFTKEEPISVFYGL-GIEEHDQEGRVITLEFKDYYFITVYTPNSQSELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W++ F Y++ +L +I GDLNV ++ IDL NP N K AG+T EER
Sbjct: 115 RLSYRMKWEEDFLAYLK-KLEEKKPVIFCGDLNVAVEEIDLKNPKTNRKNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
R +L+ G +D FR+LYPD+ G Y++WS+R +AR NN GWR+DY +VSE L + I D
Sbjct: 174 MRTILNNGFIDTFRYLYPDQTGIYSWWSYRF-NARKNNAGWRIDYFIVSECLKDRISDAK 232
Query: 309 IRSDVQGSTHCPVVL 323
I +DV GS HCP+ L
Sbjct: 233 ILTDVMGSDHCPIEL 247
>gi|237743089|ref|ZP_04573570.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
gi|229433385|gb|EEO43597.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
Length = 253
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 166/259 (64%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSAGQLD----LELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ ++ GRVIT +F++F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKQEPLSVSYGL-GIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RMIW+ F Y+++ L +++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMIWEDEFRKYLKN-LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G +D FR+ YP+ E Y++WS+R + AR NN GWR+DY +VS++L N+ D
Sbjct: 174 FTELLDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYFVVSKELEKNLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + ++GS HCPVVL L L
Sbjct: 233 IHTQIEGSDHCPVVLFLDL 251
>gi|452992928|emb|CCQ95587.1| apurinic/apyrimidinic endonuclease [Clostridium ultunense Esp]
Length = 250
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 164/257 (63%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV+K + Y E + DI +Q+ + QE ++ +L YH +W
Sbjct: 1 MKLVSWNVNGLRACVRK-GFLNYFEEVDADIFCVQETKLQEGQID----LNLPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK+KPL VKYG+ G+ ++ GRVIT +F+ F + VY PNS +L
Sbjct: 56 YAEKKGYSGTAVFTKDKPLDVKYGL-GIEEHDKEGRVITLEFEDFYLVNVYTPNSQRELT 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F +Y++ EL S +I+ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMTWEDEFRNYLK-ELDSIKPVILCGDLNVAHKEIDLKNPSTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL TG +D FR+ YPD+E AYT+WS+ K AR N GWR+DY +VSE+ + +KD
Sbjct: 174 MTELLGTGFIDTFRYFYPDKEDAYTWWSYMRK-ARDRNVGWRIDYFIVSERFKDRLKDAQ 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I S++ GS HCPV+L +
Sbjct: 233 IHSEIMGSDHCPVMLEI 249
>gi|291222020|ref|XP_002731016.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 338
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/308 (40%), Positives = 190/308 (61%), Gaps = 27/308 (8%)
Query: 41 QKSDDENQIPKKQVKFDISHEEG--SRKPY-----------TT-----KVKVSTWNVNGL 82
+KS+D + + K+ K D +G S KP TT +K+ +WNVNG+
Sbjct: 37 RKSNDSDAMKTKKTKVDNKEAKGAGSEKPTLDSLDFSLNAKTTDGKEWNIKLVSWNVNGV 96
Query: 83 RACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSDKGQGGVG 141
RA K N +Y+ +E+PDI +Q+ +CQE EVP+ + YH +W +KG G G
Sbjct: 97 RAWCK-NEGHKYVSKEDPDIFTIQETKCQEGEVPDDVK--FDGYHSYWSYAEEKGYAGTG 153
Query: 142 LLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQH 199
L +K +P++V YGI G++ ++ GR ITA++++F FI+ Y+PN+G LK + +R WD+
Sbjct: 154 LYSKVEPISVTYGI-GINKHDKEGRCITAEYEKFYFISTYIPNAGKGLKRLSYRQEWDKD 212
Query: 200 FYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVD 259
F +Y++ +L II GDLNV Q IDL NP N KTAG++ EER F + L+ GLVD
Sbjct: 213 FREYMK-KLDEKKPIIWCGDLNVAHQEIDLTNPKTNKKTAGFSKEEREGFTKHLEIGLVD 271
Query: 260 AFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHC 319
++RHL P++ G +++W++ +AR N GWRLDY ++S++L + D IIRS V GS H
Sbjct: 272 SYRHLNPEKTGEWSFWTYM-MNARGKNIGWRLDYFVLSKRLLPCLCDSIIRSQVYGSDHA 330
Query: 320 PVVLRLSL 327
P+VL ++
Sbjct: 331 PIVLFMAF 338
>gi|158340|gb|AAA62769.1| recombination repair protein [Drosophila melanogaster]
gi|3342457|gb|AAC27621.1| recombination repair protein 1 [Drosophila melanogaster]
Length = 679
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 160/256 (62%), Gaps = 11/256 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNV GLRA +KK+ ++ I E PDI LQ+ +C D++PE + L YH +W+
Sbjct: 427 LKICSWNVAGLRAWLKKDG-LQLIDLEEPDIFCLQETKCANDQLPEEVTR-LPGYHPYWL 484
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR----GRVITAKFKRFTFITVYVPNSGIKL 187
G GV + +K P+ V+YGI N+ GR+ITA++++F I VYVPNSG KL
Sbjct: 485 CMPGGYAGVAIYSKIMPIHVEYGI---GNEEFDDVGRMITAEYEKFYLINVYVPNSGRKL 541
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
++ RM W++ F Y++ +L + ++I GD+NV IDL NP N K AG+T EER
Sbjct: 542 VNLEPRMRWEKLFQAYVK-KLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERD 600
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
ELL G VD FRHLYPD +GAYT+W++ +AR N GWRLDY LVSE+ + +
Sbjct: 601 KMTELLGLGFVDTFRHLYPDRKGAYTFWTYM-ANARARNVGWRLDYCLVSERFVPKVVEH 659
Query: 308 IIRSDVQGSTHCPVVL 323
IRS GS HCP+ +
Sbjct: 660 EIRSQCLGSDHCPITI 675
>gi|336433570|ref|ZP_08613387.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
gi|336016006|gb|EGN45803.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
Length = 250
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 159/257 (61%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACV+K +E+ E + DI LQ+ + Q ++ L Y +W
Sbjct: 1 MKLISWNVNGIRACVQK-GFLEFFREADADIFCLQETKLQAGQI----ELDLEGYEQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK+KPL + YGI G+ +Q GRVIT +F+ F F+TVY PNS +L
Sbjct: 56 YAVKKGYSGTAVFTKKKPLNMTYGI-GIEEHDQEGRVITLEFEEFYFVTVYTPNSQNELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ +L +I GDLNV + IDL NP N K AG+T EER
Sbjct: 115 RLDYRMKWESDFLAYLK-KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F E+LD G +D FR+ YPD+EG Y++WS+R SAR N GWR+DY VSE L + + D
Sbjct: 174 FTEMLDAGFIDTFRYFYPDQEGIYSWWSYRF-SARAKNAGWRIDYFCVSECLKDRLADAK 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +DV GS HCP+ L L
Sbjct: 233 ILTDVMGSDHCPIELDL 249
>gi|17136678|ref|NP_476841.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|150421656|sp|P27864.2|RRP1_DROME RecName: Full=Recombination repair protein 1; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|7295875|gb|AAF51175.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|21428628|gb|AAM49974.1| LP05366p [Drosophila melanogaster]
Length = 679
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 160/256 (62%), Gaps = 11/256 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNV GLRA +KK+ ++ I E PDI LQ+ +C D++PE + L YH +W+
Sbjct: 427 LKICSWNVAGLRAWLKKDG-LQLIDLEEPDIFCLQETKCANDQLPEEVTR-LPGYHPYWL 484
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR----GRVITAKFKRFTFITVYVPNSGIKL 187
G GV + +K P+ V+YGI N+ GR+ITA++++F I VYVPNSG KL
Sbjct: 485 CMPGGYAGVAIYSKIMPIHVEYGI---GNEEFDDVGRMITAEYEKFYLINVYVPNSGRKL 541
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
++ RM W++ F Y++ +L + ++I GD+NV IDL NP N K AG+T EER
Sbjct: 542 VNLEPRMRWEKLFQAYVK-KLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERD 600
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
ELL G VD FRHLYPD +GAYT+W++ +AR N GWRLDY LVSE+ + +
Sbjct: 601 KMTELLGLGFVDTFRHLYPDRKGAYTFWTYM-ANARARNVGWRLDYCLVSERFVPKVVEH 659
Query: 308 IIRSDVQGSTHCPVVL 323
IRS GS HCP+ +
Sbjct: 660 EIRSQCLGSDHCPITI 675
>gi|221330655|ref|NP_001137776.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
gi|220901923|gb|ACL82983.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
Length = 706
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 160/256 (62%), Gaps = 11/256 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNV GLRA +KK+ ++ I E PDI LQ+ +C D++PE + L YH +W+
Sbjct: 454 LKICSWNVAGLRAWLKKDG-LQLIDLEEPDIFCLQETKCANDQLPEEVTR-LPGYHPYWL 511
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR----GRVITAKFKRFTFITVYVPNSGIKL 187
G GV + +K P+ V+YGI N+ GR+ITA++++F I VYVPNSG KL
Sbjct: 512 CMPGGYAGVAIYSKIMPIHVEYGI---GNEEFDDVGRMITAEYEKFYLINVYVPNSGRKL 568
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
++ RM W++ F Y++ +L + ++I GD+NV IDL NP N K AG+T EER
Sbjct: 569 VNLEPRMRWEKLFQAYVK-KLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERD 627
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
ELL G VD FRHLYPD +GAYT+W++ +AR N GWRLDY LVSE+ + +
Sbjct: 628 KMTELLGLGFVDTFRHLYPDRKGAYTFWTYM-ANARARNVGWRLDYCLVSERFVPKVVEH 686
Query: 308 IIRSDVQGSTHCPVVL 323
IRS GS HCP+ +
Sbjct: 687 EIRSQCLGSDHCPITI 702
>gi|150017217|ref|YP_001309471.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
gi|149903682|gb|ABR34515.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
Length = 254
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/258 (45%), Positives = 162/258 (62%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRACVKK +EY E + DI +Q+ + QE ++ L Y +W
Sbjct: 5 KLISWNVNGLRACVKK-GFLEYFKEIDADIFCIQESKLQEGQID----LELDGYTSYWNY 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+PLTVK GI G+ + GRV+T ++ F + VY PNS L+
Sbjct: 60 AEKKGYSGTAVFTKEEPLTVKRGI-GIEEHDNEGRVLTLEYGNFYLVNVYTPNSKQGLER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM+W+ F Y++ EL N +II GDLNV + IDL NP N K AG+T EER
Sbjct: 119 LDYRMVWEDVFRKYLK-ELEKNKPVIICGDLNVAHKEIDLKNPTSNRKNAGFTDEERSKI 177
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D +R+ YPD+EG Y++WS+R +AR NN GWR+DY LVSE L + ++D I
Sbjct: 178 SELLEAGFIDTYRYFYPDKEGMYSWWSYRF-NARANNAGWRIDYFLVSESLKDKLEDAKI 236
Query: 310 RSDVQGSTHCPVVLRLSL 327
+V GS HCPV L ++L
Sbjct: 237 HMEVTGSDHCPVELTINL 254
>gi|6753086|ref|NP_033817.1| DNA-(apurinic or apyrimidinic site) lyase [Mus musculus]
gi|113985|sp|P28352.2|APEX1_MOUSE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|220337|dbj|BAA14382.1| APEX nuclease precursor [Mus musculus]
gi|533108|gb|AAC13769.1| apurinic/apyrimidinic endonuclease [Mus musculus]
gi|533329|dbj|BAA07270.1| APEX nuclease [Mus musculus]
gi|12850573|dbj|BAB28774.1| unnamed protein product [Mus musculus]
gi|30851442|gb|AAH52401.1| Apurinic/apyrimidinic endonuclease 1 [Mus musculus]
gi|148688888|gb|EDL20835.1| apurinic/apyrimidinic endonuclease 1 [Mus musculus]
Length = 317
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 183/304 (60%), Gaps = 7/304 (2%)
Query: 28 RKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVK 87
+ + + K+S +K++ E + D ++ S + +K+ +WNV+GLRA +K
Sbjct: 17 KSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSPSGKSATLKICSWNVDGLRAWIK 76
Query: 88 KNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTK 145
K ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL++
Sbjct: 77 KKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEGYSGVGLLSR 135
Query: 146 EKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYI 204
+ PL V YGI +Q GRVI A+F+ F +T YVPN+G L +++R WD+ F ++
Sbjct: 136 QCPLKVSYGIGEEEHDQEGRVIVAEFESFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFL 195
Query: 205 QSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRH 263
+ +L S +++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+FRH
Sbjct: 196 K-DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRH 254
Query: 264 LYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVL 323
LYP+ AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP+ L
Sbjct: 255 LYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITL 313
Query: 324 RLSL 327
L+L
Sbjct: 314 YLAL 317
>gi|421145619|ref|ZP_15605476.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
gi|395487984|gb|EJG08882.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
Length = 253
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 164/259 (63%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSAGQLD----LELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PLTV YG+ G+ ++ GRVIT +F++F +TVY PNS KL
Sbjct: 56 YAEKKGYSGTAIFTKQEPLTVSYGL-GIEEHDKEGRVITLEFEKFYMVTVYTPNSKDKLL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+++ L +++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMTWEDEFRKYLKN-LEKKKAVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G +D FR+ YP+ E Y++WS+R + AR NN GWR+DY +VS+ L N+ D
Sbjct: 174 FTELLDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYFVVSKGLEKNLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + ++GS HCPVVL L L
Sbjct: 233 IHTQIEGSDHCPVVLILDL 251
>gi|170582912|ref|XP_001896345.1| exodeoxyribonuclease III family protein [Brugia malayi]
gi|158596475|gb|EDP34813.1| exodeoxyribonuclease III family protein [Brugia malayi]
Length = 314
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/265 (46%), Positives = 168/265 (63%), Gaps = 16/265 (6%)
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
++K+ +WNV GLRA +KKN ++EENPDI+ALQ+ +C + VP + YH F
Sbjct: 58 EIKIISWNVAGLRALIKKNGH-SVLVEENPDIIALQETKCVD--VPSELQNG---YHTFL 111
Query: 131 IGSDK-GQGGVGLLTKEKPLTVKYGIPGVS------NQRGRVITAKFKRFTFITVYVPNS 183
S+K G GGV LLTKE+P+ V Y S N +GR+I A+++ + I YVPNS
Sbjct: 112 NASEKSGHGGVLLLTKEEPIKVTYSFDDKSKCDIDGNGKGRIIIAEYESYYLINAYVPNS 171
Query: 184 GIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYT 242
G L +D R IWD ++ +I+ +L + ++ GDLNV Q IDLANP N KTAG+T
Sbjct: 172 GRGLVNLDKRKIWDDYYLTFIK-KLDLSKPVVYVGDLNVAHQEIDLANPKTNRNKTAGFT 230
Query: 243 VEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLAN 302
+ER +F LLD G VD FR L PD+EGAYT+WS + +AR N GWRLDY +VSE++ N
Sbjct: 231 DQERNDFTRLLDAGFVDVFRRLNPDKEGAYTFWSNMH-NAREKNVGWRLDYFVVSERIMN 289
Query: 303 NIKDCIIRSDVQGSTHCPVVLRLSL 327
+K C I ++GS HCP+ L + L
Sbjct: 290 KVKKCDILHSIKGSDHCPLSLTIEL 314
>gi|269123555|ref|YP_003306132.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
gi|268314881|gb|ACZ01255.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
Length = 251
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 165/256 (64%), Gaps = 9/256 (3%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG 132
K +WNVNGLRAC+KK ++Y E+ P+I+ LQ+I+ E ++ ++Y+
Sbjct: 3 KYISWNVNGLRACIKK-GFLDYFNEQKPNIIGLQEIKMSEGQLDLELEGYYTYYNY---A 58
Query: 133 SDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + T +P++V YGI G+ ++ GRVITA+F+ + F+TVY PNS +L+ +
Sbjct: 59 EKKGYSGTAIFTDVEPISVSYGI-GIEEHDKEGRVITAEFEDYYFVTVYTPNSKNELERL 117
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+RMIW+ F Y++ +L +I+ GDLNV + IDL NP N ++AG+T+EER F
Sbjct: 118 DYRMIWEDEFRSYLK-KLEEKKPVIVCGDLNVAHKEIDLKNPKSNTRSAGFTIEERNKFT 176
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
EL++ G +D FR+ YPD+ AY++WS+R +AR NN GWR+DY VS L + + D I
Sbjct: 177 ELIENGFIDTFRYFYPDKIHAYSWWSYRG-NARKNNTGWRIDYFCVSSSLKDRLVDAEIH 235
Query: 311 SDVQGSTHCPVVLRLS 326
V+GS HCPVVL ++
Sbjct: 236 DKVEGSDHCPVVLYIN 251
>gi|154502978|ref|ZP_02040038.1| hypothetical protein RUMGNA_00800 [Ruminococcus gnavus ATCC 29149]
gi|153796517|gb|EDN78937.1| exodeoxyribonuclease III [Ruminococcus gnavus ATCC 29149]
Length = 250
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 159/257 (61%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACV+K +E+ E + DI LQ+ + Q ++ L Y +W
Sbjct: 1 MKLISWNVNGIRACVQK-GFLEFFREADADIFCLQETKLQAGQI----ELDLEGYEQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK+KPL V YGI G+ +Q GRVIT +F+ F F+TVY PNS +L
Sbjct: 56 YAVKKGYSGTAVFTKKKPLNVTYGI-GIEEHDQEGRVITLEFEEFYFVTVYTPNSQNELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ +L +I GDLNV + IDL NP N K AG+T EER
Sbjct: 115 RLDYRMKWESDFLAYLK-KLEEEKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F E+L+ G +D FR+ YPD+EG Y++WS+R SAR N GWR+DY VSE L + + D
Sbjct: 174 FTEMLNAGFIDTFRYFYPDQEGIYSWWSYRF-SARAKNAGWRIDYFCVSECLKDRLADAK 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +DV GS HCP+ L L
Sbjct: 233 ILTDVMGSDHCPIELDL 249
>gi|47087383|ref|NP_998586.1| DNA-(apurinic or apyrimidinic site) lyase [Danio rerio]
gi|33416367|gb|AAH55545.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Danio rerio]
Length = 310
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 161/259 (62%), Gaps = 6/259 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+++WNV+GLRA VKKN ++++ +E+PDI+ LQ+ +C E +P + H +W
Sbjct: 55 MKITSWNVDGLRAWVKKNG-LDWVRKEDPDILCLQETKCAEKALPADITAMPEYPHKYWA 113
Query: 132 GSD--KGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLK 188
GS+ +G GV +L K +PL V YGI + + GRVITA+F F +T YVPN+ L
Sbjct: 114 GSEDKEGYSGVAMLCKTEPLNVTYGIGKEEHDKEGRVITAEFPDFFLVTAYVPNASRGLV 173
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R WD F Y+ L + +++ GDLNV Q IDL NP N K AG+T EER
Sbjct: 174 RLDYRKTWDVDFRAYLCG-LDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAGFTPEEREG 232
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL+ G D+FR LYPD+ AYT+W++ +AR N GWRLDY ++S L + D
Sbjct: 233 FTQLLEAGFTDSFRELYPDQAYAYTFWTYM-MNARSKNVGWRLDYFVLSSALLPGLCDSK 291
Query: 309 IRSDVQGSTHCPVVLRLSL 327
IR+ GS HCP+ L L++
Sbjct: 292 IRNTAMGSDHCPITLFLAV 310
>gi|421526611|ref|ZP_15973218.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
gi|402257168|gb|EJU07643.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
Length = 253
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 161/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + E ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSEGQLD----LDLKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKE+PL+V YG+ G+ ++ GRVIT +F++F ITVY PNS +L+
Sbjct: 56 YAEKKGYSGTAIFTKEEPLSVSYGL-GIEEHDKEGRVITLEFEKFYMITVYTPNSKDELQ 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F Y+++ L +++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMVWEDEFRKYLKN-LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL G D FRH YPD E AY++WS+R +AR NN GWR+DY +VS L + D
Sbjct: 174 FTELLAAGFTDTFRHFYPDLEHAYSWWSYR-ANARKNNTGWRIDYFVVSNALDKYLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + +GS HCPVVL L
Sbjct: 233 IHAQTEGSDHCPVVLFLEF 251
>gi|13162337|ref|NP_077062.1| DNA-(apurinic or apyrimidinic site) lyase [Rattus norvegicus]
gi|1168468|sp|P43138.2|APEX1_RAT RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|11878235|gb|AAG40859.1|AF309114_1 nuclease APEX [Rattus norvegicus]
gi|624915|dbj|BAA07938.1| APEX nuclease [Rattus norvegicus]
gi|5360709|dbj|BAA82124.1| Apex nuclease [Rattus norvegicus]
gi|50926078|gb|AAH78816.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Rattus
norvegicus]
gi|149033628|gb|EDL88426.1| apurinic/apyrimidinic endonuclease 1, isoform CRA_a [Rattus
norvegicus]
Length = 317
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 120/304 (39%), Positives = 183/304 (60%), Gaps = 7/304 (2%)
Query: 28 RKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVK 87
+ + + K+S +K++ E + D ++ S + +K+ +WNV+GLRA +K
Sbjct: 17 KSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSASGKSATLKICSWNVDGLRAWIK 76
Query: 88 KNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTK 145
K ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL++
Sbjct: 77 KKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEGYSGVGLLSR 135
Query: 146 EKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYI 204
+ PL V YGI +Q GRVI A+F+ F +T YVPN+G L +++R WD+ F ++
Sbjct: 136 QCPLKVSYGIGEEEHDQEGRVIVAEFESFILVTAYVPNAGRGLVRLEYRQRWDEAFRKFL 195
Query: 205 QSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRH 263
+ +L S +++ GDLNV + IDL NP N K AG+T +ER+ F E+L L D+FRH
Sbjct: 196 K-DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGEMLQAVPLADSFRH 254
Query: 264 LYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVL 323
LYP+ AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP+ L
Sbjct: 255 LYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITL 313
Query: 324 RLSL 327
L+L
Sbjct: 314 YLAL 317
>gi|167767320|ref|ZP_02439373.1| hypothetical protein CLOSS21_01839 [Clostridium sp. SS2/1]
gi|429761671|ref|ZP_19294088.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
gi|167711295|gb|EDS21874.1| exodeoxyribonuclease III [Clostridium sp. SS2/1]
gi|291559374|emb|CBL38174.1| exodeoxyribonuclease III [butyrate-producing bacterium SSC/2]
gi|429183247|gb|EKY24313.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
Length = 250
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 163/255 (63%), Gaps = 11/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RACVKK +++ E + DI +Q+ + QE ++ +L YH +W
Sbjct: 1 MKFISWNVNGIRACVKK-GFLDFFNETDADIFCIQESKMQEGQLD----LNLPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G G+ TKE+P++V YG+ G+ +Q GRVIT +FK + FITVY PNS +L
Sbjct: 56 YAVKKGYSGTGIFTKEEPISVFYGL-GIEEHDQEGRVITLEFKDYYFITVYTPNSQSELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W++ F Y++ +L +I GDLNV ++ IDL NP N K AG+T EER
Sbjct: 115 RLSYRMKWEEDFLAYLK-KLEEKKPVIFCGDLNVAVEEIDLKNPKTNRKNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
R +L G +D FR+LYPD+ G Y++WS+R +AR NN GWR+DY +VSE L + I D
Sbjct: 174 MRTILSNGFIDTFRYLYPDQTGIYSWWSYRF-NARKNNAGWRIDYFIVSECLKDRISDAK 232
Query: 309 IRSDVQGSTHCPVVL 323
I +DV GS HCP+ L
Sbjct: 233 ILTDVMGSDHCPIEL 247
>gi|162329921|pdb|2O3C|A Chain A, Crystal Structure Of Zebrafish Ape
gi|162329922|pdb|2O3C|B Chain B, Crystal Structure Of Zebrafish Ape
gi|162329923|pdb|2O3C|C Chain C, Crystal Structure Of Zebrafish Ape
Length = 282
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 161/259 (62%), Gaps = 6/259 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+++WNV+GLRA VKKN ++++ +E+PDI+ LQ+ +C E +P + H +W
Sbjct: 27 MKITSWNVDGLRAWVKKNG-LDWVRKEDPDILCLQETKCAEKALPADITAMPEYPHKYWA 85
Query: 132 GSD--KGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLK 188
GS+ +G GV +L K +PL V YGI + + GRVITA+F F +T YVPN+ L
Sbjct: 86 GSEDKEGYSGVAMLCKTEPLNVTYGIGKEEHDKEGRVITAEFPDFFLVTAYVPNASRGLV 145
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R WD F Y+ L + +++ GDLNV Q IDL NP N K AG+T EER
Sbjct: 146 RLDYRKTWDVDFRAYLCG-LDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAGFTPEEREG 204
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL+ G D+FR LYPD+ AYT+W++ +AR N GWRLDY ++S L + D
Sbjct: 205 FTQLLEAGFTDSFRELYPDQAYAYTFWTYM-MNARSKNVGWRLDYFVLSSALLPGLCDSK 263
Query: 309 IRSDVQGSTHCPVVLRLSL 327
IR+ GS HCP+ L L++
Sbjct: 264 IRNTAMGSDHCPITLFLAV 282
>gi|254302413|ref|ZP_04969771.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322605|gb|EDK87855.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 253
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 165/259 (63%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSAGQLD----LELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ ++ GRVIT +F++F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKQEPLSVSYGL-GIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F Y+++ L +++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMVWEDEFRKYLKN-LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G +D FR+ YP+ E Y++WS+R + AR NN GWR+DY +VS+ L N+ D
Sbjct: 174 FTELLDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYFVVSKGLEKNLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S ++GS HCPVVL L L
Sbjct: 233 IHSQIEGSDHCPVVLFLDL 251
>gi|225548156|ref|ZP_03769441.1| hypothetical protein RUMHYD_00135 [Blautia hydrogenotrophica DSM
10507]
gi|225040687|gb|EEG50933.1| exodeoxyribonuclease III [Blautia hydrogenotrophica DSM 10507]
Length = 251
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 163/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNG+RAC+KK EY E N DI +Q+ +CQE +V +L YH +W
Sbjct: 1 MKFISWNVNGIRACLKK-GFEEYFQEANADIFCIQETKCQEGQV----ELTLPGYHQYWN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + K +PL+V YGI G+ +Q GRVIT +++ F F+TVY PNS +L
Sbjct: 56 SAVRKGYSGTAIFAKREPLSVSYGI-GIEEHDQEGRVITLEYEDFYFVTVYTPNSQNELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W++ F +Y+ ++L ++ GDLNV Q IDL NP N K AG+T EER
Sbjct: 115 RLSYRMDWERDFLEYL-TKLEERKPVVWCGDLNVAHQEIDLKNPKTNRKNAGFTDEERAC 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ++L++G +D FR+ YPD+EG Y++WS+R + AR N GWR+DY LVS L + D
Sbjct: 174 FTKVLESGFIDTFRYFYPDQEGIYSWWSYRFR-AREKNAGWRIDYFLVSSSLREKMVDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + V GS HCPV L ++L
Sbjct: 233 IHTQVLGSDHCPVELDITL 251
>gi|289766441|ref|ZP_06525819.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
gi|289717996|gb|EFD82008.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
Length = 253
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 166/259 (64%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSAGQLD----LELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ ++ GRVIT +F++F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKQEPLSVSYGL-GIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RMIW+ F Y+++ L +++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMIWEDEFRKYLKN-LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G +D FR+ YP+ E Y++WS+R + AR NN GWR+DY +VS+ L N+ D
Sbjct: 174 FTELLDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYFVVSKGLEKNLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + ++GS HCPVVL L+L
Sbjct: 233 IHTQIEGSDHCPVVLFLNL 251
>gi|317374848|sp|A0MTA1.1|APEX1_DANRE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; Short=zAP1
gi|117549778|gb|ABK35081.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549788|gb|ABK35082.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549790|gb|ABK35083.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549792|gb|ABK35084.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
Length = 310
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 161/259 (62%), Gaps = 6/259 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+++WNV+GLRA VKKN ++++ +E+PDI+ LQ+ +C E +P + H +W
Sbjct: 55 MKITSWNVDGLRAWVKKNG-LDWVRKEDPDILCLQETKCAEKALPADITGMPEYPHKYWA 113
Query: 132 GSD--KGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLK 188
GS+ +G GV +L K +PL V YGI + + GRVITA+F F +T YVPN+ L
Sbjct: 114 GSEDKEGYSGVAMLCKTEPLNVTYGIGKEEHDKEGRVITAEFPDFFLVTAYVPNASRGLV 173
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R WD F Y+ L + +++ GDLNV Q IDL NP N K AG+T EER
Sbjct: 174 RLDYRKTWDVDFRAYLCG-LDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAGFTPEEREG 232
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL+ G D+FR LYPD+ AYT+W++ +AR N GWRLDY ++S L + D
Sbjct: 233 FTQLLEAGFTDSFRELYPDQAYAYTFWTYM-MNARSKNVGWRLDYFVLSSALLPGLCDSK 291
Query: 309 IRSDVQGSTHCPVVLRLSL 327
IR+ GS HCP+ L L++
Sbjct: 292 IRNTAMGSDHCPITLFLAV 310
>gi|52141752|ref|YP_085078.1| exodeoxyribonuclease III [Bacillus cereus E33L]
gi|51975221|gb|AAU16771.1| exodeoxyribonuclease III [Bacillus cereus E33L]
Length = 252
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 163/259 (62%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA + K +EY+ E N DI LQ+I+ QE ++ ++ Y+ +W
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQEGQID----LNVEDYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PN+ L+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGL-GIEEHDQEGRVITLEFEGFYIITLYTPNAKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EER
Sbjct: 116 RLDYRMKWEDDFRAYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L+ G +D +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ N IKD
Sbjct: 175 FTCILEEGFIDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERIKNQIKDAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S+V GS HCPV L ++
Sbjct: 234 INSEVMGSDHCPVELHINF 252
>gi|336420229|ref|ZP_08600467.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
gi|336161634|gb|EGN64634.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
Length = 253
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 165/259 (63%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSAGQLD----LELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ ++ GRVIT +F++F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKQEPLSVSYGL-GIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RMIW+ F Y+++ L +++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMIWEDEFRKYLKN-LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G +D FR+ YP+ E Y++WS+R + AR NN GWR+DY +VS+ L N+ D
Sbjct: 174 FTELLDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYFVVSKGLEKNLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + ++GS HCPVVL L L
Sbjct: 233 IHTQIEGSDHCPVVLFLDL 251
>gi|213512198|ref|NP_001135227.1| DNA-(apurinic or apyrimidinic site) lyase [Salmo salar]
gi|197631957|gb|ACH70702.1| APEX nuclease 1 [Salmo salar]
gi|209154634|gb|ACI33549.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
gi|209154684|gb|ACI33574.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
Length = 312
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 172/302 (56%), Gaps = 19/302 (6%)
Query: 27 SRKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACV 86
++K KK+K I SD +++ K + +K+++WNV+GLRA V
Sbjct: 25 AKKGKKVKEPEAPILYSDPPDKMNSKDGR-------------AANMKITSWNVDGLRAWV 71
Query: 87 KKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDKGQG--GVGLLT 144
KK ++++ +E PD++ LQ+ +C E +P+ H +W GSD+ +G GV +L
Sbjct: 72 KKKG-LDWVRDEAPDVLCLQETKCAEKSLPDEITSMPEFPHKYWAGSDEKEGYSGVAMLC 130
Query: 145 KEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDY 203
K +PL V YGI + + GRVITA+F F +T YVPNSG L +D+R WD F Y
Sbjct: 131 KTEPLKVTYGIGKEEHDKEGRVITAEFPTFFLVTAYVPNSGRGLVRLDYRKTWDVEFKAY 190
Query: 204 IQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRH 263
+ S+L +++ GDLNV + IDL N N K AG+T EER F +LL G D+FR
Sbjct: 191 L-SDLDKRKPLVLCGDLNVAHEEIDLKNSKGNKKNAGFTAEEREGFNQLLAAGFTDSFRE 249
Query: 264 LYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVL 323
LYP++ AYT+W++ S R N GWRLDY ++S L + D IR+ GS HCP+ L
Sbjct: 250 LYPEQANAYTFWTYMMNS-RSKNVGWRLDYFVLSSALLPGLCDSKIRNQAMGSDHCPITL 308
Query: 324 RL 325
+
Sbjct: 309 HM 310
>gi|350268379|ref|YP_004879686.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349601266|gb|AEP89054.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 252
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 119/262 (45%), Positives = 164/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA ++K + Y+ EE+ DI+ LQ+ + Q+ +V PE YH+
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------YHV 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +K+KPL V YGI G+ +Q GRVIT +F+ +TVY PNS
Sbjct: 54 YWNYAVKKGYSGTAVFSKQKPLHVMYGI-GIEEHDQEGRVITLEFENLFVMTVYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+RM W++ YI EL +I+ GDLNV Q IDL NP N AG++ +E
Sbjct: 113 GLERIDYRMQWEEALLSYIL-ELDKKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSEQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F L+ G VD+FRH+YPD EGAY++WS+R AR N GWRLDY +VSE+L I+
Sbjct: 172 RGAFTRFLEAGFVDSFRHVYPDLEGAYSWWSYR-AGARDRNIGWRLDYFVVSERLKEQIE 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I +DV GS HCPV L +++
Sbjct: 231 DASISADVMGSDHCPVELMINI 252
>gi|291403439|ref|XP_002718079.1| PREDICTED: APEX nuclease 1 [Oryctolagus cuniculus]
Length = 318
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 164/263 (62%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+K+ +WNV+GLRA +KK +++I EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 59 AATLKICSWNVDGLRAWIKKKG-LDWIKEEAPDILCLQETKCSENKLPAELQELPGLPHQ 117
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YVPN+G
Sbjct: 118 YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGR 177
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYPD AYT+W++ +AR N GWRLDY L+S L +
Sbjct: 237 RQGFGELLQAVPLTDSFRHLYPDTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPAL 295
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 296 CDSKIRSKALGSDHCPITLYLAL 318
>gi|402875487|ref|XP_003901536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
gi|402875489|ref|XP_003901537.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
Length = 318
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 176/298 (59%), Gaps = 7/298 (2%)
Query: 34 KRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVE 93
K+S +K+D E + D ++ S +K+ +WNV+GLRA +KK ++
Sbjct: 24 KKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKG-LD 82
Query: 94 YILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTKEKPLTV 151
++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL++ PL V
Sbjct: 83 WVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRHCPLKV 142
Query: 152 KYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRS 210
YGI +Q GRVI A+F F +T YVPN+G L +++R WD+ F +++ L S
Sbjct: 143 SYGIGEEEHDQEGRVIVAEFDSFVLVTTYVPNAGRGLVRLEYRQRWDEAFRKFLKG-LAS 201
Query: 211 NSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRHLYPDEE 269
+++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+FRHLYP+
Sbjct: 202 RKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTP 261
Query: 270 GAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP+ L L+L
Sbjct: 262 YAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 318
>gi|336401875|ref|ZP_08582631.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
gi|336160344|gb|EGN63396.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
Length = 253
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 166/259 (64%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSAGQLD----LELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ ++ GRVIT +F++F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKQEPLSVSYGL-GIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F Y+++ L +++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMVWEDEFRKYLKN-LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G +D FR+ YP+ E Y++WS+R + AR NN GWR+DY +VS+ L N+ D
Sbjct: 174 FTELLDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYFVVSKGLEKNLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + ++GS HCPVVL L+L
Sbjct: 233 IHTQIEGSDHCPVVLFLNL 251
>gi|422932904|ref|ZP_16965829.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
gi|339891952|gb|EGQ80860.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
Length = 253
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 166/259 (64%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSAGQLD----LELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ ++ GRVIT +F++F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKQEPLSVSYGL-GIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F Y+++ L +++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMVWEDEFRKYLKN-LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G +D FR+ YP+ E Y++WS+R + AR NN GWR+DY +VS+ L N+ D
Sbjct: 174 FTELLDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNTGWRIDYFVVSKGLEKNLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + ++GS HCPVVL L+L
Sbjct: 233 IHTQIEGSDHCPVVLFLNL 251
>gi|423395948|ref|ZP_17373149.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|423406828|ref|ZP_17383977.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
gi|401653690|gb|EJS71234.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|401660118|gb|EJS77601.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
Length = 252
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 160/259 (61%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQGGQID----LNLEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFTKKEPLSVAYGL-GIEEHDQEGRVITLEFEDFYMITLYTPNSKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EER
Sbjct: 116 RLDYRMKWEDDFRAYIKR-LDEEKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L+ G VD +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ I D
Sbjct: 175 FTRVLEEGFVDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKEQITDAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S+V GS HCPV L +
Sbjct: 234 INSEVMGSDHCPVELHIDF 252
>gi|410725723|ref|ZP_11364086.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
gi|410601734|gb|EKQ56234.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
Length = 252
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 164/258 (63%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRACVKK +++ E + DI +Q+ + QE ++ L ++ +W
Sbjct: 3 KLISWNVNGLRACVKK-GFLDFFKESDADIFCIQETKLQEGQID----LDLDGFNSYWNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+PL+VK GI G+ + GRV+T +F F + VY PNS L+
Sbjct: 58 AEKKGYSGTAVFTKEEPLSVKIGI-GIEEHDNEGRVLTLEFNDFYLVNVYTPNSKQGLER 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM+W+ F Y++ EL +I+ GDLNV + IDL NP N K AG+T EER
Sbjct: 117 LDYRMVWEDVFRQYLK-ELEKKKPVILCGDLNVAHKEIDLKNPKVNRKNAGFTDEEREKI 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LLD+G +D +R YPD+EGAY++WS+R +AR NN GWR+DY LVSE L + ++D I
Sbjct: 176 TQLLDSGFIDTYRFFYPDKEGAYSWWSYRF-NARANNAGWRIDYFLVSESLKDKLEDAKI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
D++GS HCPV L ++L
Sbjct: 235 HMDIEGSDHCPVELLINL 252
>gi|348524661|ref|XP_003449841.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Oreochromis niloticus]
Length = 310
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 159/259 (61%), Gaps = 6/259 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+++WNV+GLRA VKK ++++ EE+PDI+ LQ+ +C E +P + H +W
Sbjct: 55 MKITSWNVDGLRAWVKKKG-LDWVREEDPDILCLQETKCAEKALPAEITSMPEYPHKYWA 113
Query: 132 --GSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLK 188
G +G GV +L K +P+ V YGI + + GRVITA+F F +T YVPN+ L
Sbjct: 114 ASGDKEGYSGVAMLCKTEPIKVTYGIGKEEHDKEGRVITAEFPSFYLVTAYVPNASRGLV 173
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R WD F Y+ SEL +++ GDLNV Q IDL NP N K AG+T EER
Sbjct: 174 RLDYRKTWDVDFRAYL-SELDMQKPLVLCGDLNVAHQEIDLKNPKGNKKNAGFTPEEREG 232
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL G VD+FR LYP++ AYT+W++ +AR N GWRLDY ++S L + D
Sbjct: 233 FSQLLAAGFVDSFRELYPEQTNAYTFWTYM-MNARSKNVGWRLDYFVLSSSLLPGLCDSK 291
Query: 309 IRSDVQGSTHCPVVLRLSL 327
IR+ GS HCP+ L +++
Sbjct: 292 IRNKAMGSDHCPITLHIAV 310
>gi|367462704|gb|ADJ96599.2| DNA repair enzyme APEX-1 [Camelus dromedarius]
Length = 318
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 182/304 (59%), Gaps = 7/304 (2%)
Query: 28 RKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVK 87
+ + + K+S +K++ E + D ++ S + +K+ +WNV+GLRA +K
Sbjct: 18 KTEPEAKKSKTGAKKTEKEAAGEGAALYEDPPDQKTSPSGKSATLKICSWNVDGLRAWIK 77
Query: 88 KNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTK 145
K ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL++
Sbjct: 78 KKG-LDWVKEEAPDILCLQETKCSENKLPPELQELSGLPHQYWSAPSDKEGYSGVGLLSR 136
Query: 146 EKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYI 204
+ P+ V YGI +Q GRVI A+F F +TVYVPN+G L +++R WD+ F ++
Sbjct: 137 QCPIKVSYGIGEEEHDQEGRVIVAEFDAFVLVTVYVPNAGRGLVRLEYRQRWDEAFRKFL 196
Query: 205 QSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRH 263
+ L S +++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+FRH
Sbjct: 197 KG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRH 255
Query: 264 LYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVL 323
LYP+ AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP+ L
Sbjct: 256 LYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITL 314
Query: 324 RLSL 327
L+L
Sbjct: 315 YLAL 318
>gi|402584375|gb|EJW78317.1| exodeoxyribonuclease III [Wuchereria bancrofti]
Length = 314
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 123/264 (46%), Positives = 167/264 (63%), Gaps = 16/264 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNV GLRA +KK+ ++EENPDI+ALQ+ +C E VP + YH F
Sbjct: 59 IKIISWNVAGLRALIKKSGH-SVLVEENPDIVALQETKCVE--VPNELQNG---YHTFLN 112
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS------NQRGRVITAKFKRFTFITVYVPNSG 184
S+K G GGV LLTKE+P+ V Y S N +GR+I A+++ + I YVPNSG
Sbjct: 113 ASEKSGHGGVLLLTKEEPIKVAYTFDDKSKCVVDGNGKGRIIIAEYESYYLINAYVPNSG 172
Query: 185 IKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTV 243
L +D R IWD ++ +I+ +L + ++ GDLNV Q IDLANP N KTAG+T
Sbjct: 173 RGLVNLDKRKIWDDYYLTFIK-KLDLSKPVVYVGDLNVAHQEIDLANPKTNRNKTAGFTD 231
Query: 244 EERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANN 303
+ER +F LLD G VD FR L PD+EGAYT+WS + +AR N GWRLDY +VSE++ N
Sbjct: 232 QERNDFTRLLDAGFVDVFRRLNPDKEGAYTFWSNMH-NAREKNVGWRLDYFVVSERIMNK 290
Query: 304 IKDCIIRSDVQGSTHCPVVLRLSL 327
+K C I ++GS HCP+ L + L
Sbjct: 291 VKKCDILHSIKGSDHCPLSLTIEL 314
>gi|395849480|ref|XP_003797352.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Otolemur
garnettii]
Length = 318
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 165/263 (62%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P + H
Sbjct: 59 SATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPTELQDLPGLSHQ 117
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A+F +F +T YVPN+G
Sbjct: 118 YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDKFVLVTAYVPNAGR 177
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKG-LTSQKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S L +
Sbjct: 237 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYM-MNARAKNVGWRLDYFLLSHSLLPAL 295
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 296 CDSKIRSKALGSDHCPITLYLAL 318
>gi|410961722|ref|XP_003987428.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Felis catus]
gi|410961726|ref|XP_003987430.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 3
[Felis catus]
gi|410961728|ref|XP_003987431.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 4
[Felis catus]
gi|410961730|ref|XP_003987432.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 5
[Felis catus]
Length = 318
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 166/263 (63%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 59 SATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQ 117
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YVPN+G
Sbjct: 118 YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGR 177
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL+ L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S L +
Sbjct: 237 RQGFGELLEAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPAL 295
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 296 CDSKIRSKALGSDHCPITLYLAL 318
>gi|399925203|ref|ZP_10782561.1| exodeoxyribonuclease III [Peptoniphilus rhinitidis 1-13]
Length = 254
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 168/260 (64%), Gaps = 11/260 (4%)
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
++K+ +WNVNGLRA VKK E+ + + D+ ALQ+I+ QE ++ L HY+ F+
Sbjct: 3 EIKMISWNVNGLRAVVKKGFMDEF-KKLDADLFALQEIKLQEGQI----EIDLPHYYEFY 57
Query: 131 -IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKL 187
KG G + +K++P++V YGI G+ ++ GRVIT +F+ F F+T Y PNS KL
Sbjct: 58 NYAEKKGYSGTAIFSKKEPISVNYGI-GIDEHDKEGRVITLEFENFYFVTCYTPNSKRKL 116
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+ +D+R +W+ F +Y+ +ELR N +I+ GDLNV + IDLANP N K+AG+T EER
Sbjct: 117 ERLDYRQVWEDDFRNYL-NELRKNKEVILCGDLNVAHKEIDLANPSTNRKSAGFTDEERE 175
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
F ELL G +D FR+ YPD + Y++WS+ KS R N GWR+DY +VSE L ++ D
Sbjct: 176 KFTELLKNGYIDTFRYFYPDLKDEYSWWSYFAKS-RERNVGWRIDYFVVSEGLEKHLVDA 234
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
I +V GS HCPV L++ L
Sbjct: 235 KIHQEVMGSDHCPVELKIKL 254
>gi|402574713|ref|YP_006624056.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
gi|402255910|gb|AFQ46185.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
Length = 251
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 164/256 (64%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACVK N +++ +EN DI LQ+ + Q D++P +L Y+ +W
Sbjct: 1 MKLISWNVNGIRACVK-NGFLDFFQKENADIFCLQETKVQADQIP----FNLEGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++P+ + YGI + + GRVIT +F++ +TVY PNS L
Sbjct: 56 FAQKKGYSGTAIFTKKEPMKICYGIGQEEHDKEGRVITLEFEKHYVVTVYTPNSQRGLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W++ F +I+ +L N +I GDLNV + IDL NP N K AG+++EER F
Sbjct: 116 LEYRMKWEEEFLKFIK-DLEKNKPVIFCGDLNVAHEEIDLKNPSSNRKNAGFSMEERNKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
E++ +G +D FR+ YPD+ AYT+WS+ +AR+NN GWR+DY VSE L + +K +I
Sbjct: 175 GEIIKSGFIDTFRYFYPDKTNAYTWWSYM-FNARVNNAGWRIDYFCVSEILKDRLKAAVI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+DV GS HCPV L +
Sbjct: 234 YNDVMGSDHCPVGLEM 249
>gi|229104299|ref|ZP_04234968.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|229117223|ref|ZP_04246601.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|423378475|ref|ZP_17355759.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
gi|423448243|ref|ZP_17425122.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|423540784|ref|ZP_17517175.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|423547021|ref|ZP_17523379.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|423623188|ref|ZP_17598966.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|228666123|gb|EEL21587.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|228678997|gb|EEL33205.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|401128837|gb|EJQ36520.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|401171972|gb|EJQ79193.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|401178742|gb|EJQ85915.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|401258965|gb|EJR65143.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|401635242|gb|EJS52998.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
Length = 252
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 162/262 (61%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTKKEPLSVTYGL-GIEEHDQEGRVITLEFEDFYMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ +L ++ GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERLDYRMEWEDDFRTYIK-QLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +L+ G VD +RHLYP++EGAY++WS+R AR N GWRLDY +VSE++ I
Sbjct: 172 REKFTRILEEGFVDTYRHLYPNQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERIKGQIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I S++ GS HCPV L ++
Sbjct: 231 DAKINSEIMGSDHCPVELHINF 252
>gi|423477848|ref|ZP_17454563.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
gi|402428773|gb|EJV60865.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
Length = 252
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 163/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q+ ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQDGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +K+KPL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFSKKKPLSVTYGL-GIEEHDQEGRVITLEFEDFYIITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L ++ GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERLDYRMKWEDDFRAYIK-RLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +L+ G +D +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ N I
Sbjct: 172 REKFTRILEEGFIDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKNQIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
+ I S+V GS HCPV L ++
Sbjct: 231 EAEINSEVMGSDHCPVELHINF 252
>gi|422339748|ref|ZP_16420705.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370591|gb|EHG17971.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 253
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 165/259 (63%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + E ++ L Y+ +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSEGQLD----LELKGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ ++ GRVIT +F++F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKQEPLSVSYGL-GIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F Y+++ L +++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMVWEDEFRKYLKN-LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G +D FR+ YP+ E Y++WS+R +AR NN GWR+DY +VS+ L N+ D
Sbjct: 174 FTELLDSGFIDTFRYFYPNLEQVYSWWSYR-ANARKNNAGWRIDYFVVSKGLEKNLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S +GS HCPVVL L L
Sbjct: 233 IHSQTEGSDHCPVVLFLDL 251
>gi|162329924|pdb|2O3H|A Chain A, Crystal Structure Of The Human C65a Ape
Length = 285
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 169/268 (63%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+++WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 23 SGKPAT--LKIASWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 79
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 80 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYV 139
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 140 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 198
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 199 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 257
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 258 LLPALCDSKIRSKALGSDHCPITLYLAL 285
>gi|188588613|ref|YP_001921245.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|188498894|gb|ACD52030.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
Length = 251
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 162/254 (63%), Gaps = 11/254 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRACVKK ++ + E N DI +Q+ + QE ++ +L Y+ +W
Sbjct: 3 KLISWNVNGLRACVKK-GFLDILKESNADIFCIQESKLQEGQID----LNLEEYYDYWNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + +KEKPL + GI G+ ++ GRV+T +F+ F + VY PNS KL
Sbjct: 58 AEKKGYSGTAVFSKEKPLNISLGI-GIEEHDKEGRVLTLEFEEFYLVNVYTPNSQQKLAR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
ID+RM W+ F DY+ +EL + ++I+ GDLNV + IDL NP N AG++ EER F
Sbjct: 117 IDYRMAWENDFRDYL-NELNKDKSVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL +G +D +R+ YPD+EGAY++WS+R +AR NN GWR+DY LVS+ + + D I
Sbjct: 176 DELLKSGFIDTYRYFYPDKEGAYSWWSYR-FNARANNAGWRIDYFLVSKDFEDRLVDANI 234
Query: 310 RSDVQGSTHCPVVL 323
+ ++GS HCPV L
Sbjct: 235 HTQIEGSDHCPVEL 248
>gi|384475785|ref|NP_001245038.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|90078218|dbj|BAE88789.1| unnamed protein product [Macaca fascicularis]
gi|355693074|gb|EHH27677.1| hypothetical protein EGK_17940 [Macaca mulatta]
gi|355767431|gb|EHH62612.1| hypothetical protein EGM_21005 [Macaca fascicularis]
gi|383417983|gb|AFH32205.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946780|gb|AFI36995.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946782|gb|AFI36996.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946784|gb|AFI36997.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
Length = 318
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 176/298 (59%), Gaps = 7/298 (2%)
Query: 34 KRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVE 93
K+S +K+D E + D ++ S +K+ +WNV+GLRA +KK ++
Sbjct: 24 KKSKTPAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKG-LD 82
Query: 94 YILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTKEKPLTV 151
++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL++ PL V
Sbjct: 83 WVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRHCPLKV 142
Query: 152 KYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRS 210
YGI +Q GRVI A+F F +T YVPN+G L +++R WD+ F +++ L S
Sbjct: 143 SYGIGEEEHDQEGRVIVAEFDSFVLVTTYVPNAGRGLVRLEYRQRWDEAFRKFLKG-LAS 201
Query: 211 NSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRHLYPDEE 269
+++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+FRHLYP+
Sbjct: 202 RKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTP 261
Query: 270 GAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP+ L L+L
Sbjct: 262 YAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 318
>gi|18375501|ref|NP_001632.2| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375503|ref|NP_542379.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375505|ref|NP_542380.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|346644849|ref|NP_001231178.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|113984|sp|P27695.2|APEX1_HUMAN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; Short=APE-1; AltName: Full=REF-1;
AltName: Full=Redox factor-1; Contains: RecName:
Full=DNA-(apurinic or apyrimidinic site) lyase,
mitochondrial
gi|13399540|pdb|1E9N|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399541|pdb|1E9N|B Chain B, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399606|pdb|1HD7|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIDINIMIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|354459810|pdb|3U8U|A Chain A, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459811|pdb|3U8U|B Chain B, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459812|pdb|3U8U|C Chain C, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459813|pdb|3U8U|D Chain D, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459814|pdb|3U8U|E Chain E, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459815|pdb|3U8U|F Chain F, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|19339022|gb|AAL86909.1|AF488551_1 APEX nuclease (multifunctional DNA repair enzyme) [Homo sapiens]
gi|32022|emb|CAA46925.1| AP endonuclease 1 [Homo sapiens]
gi|178747|gb|AAA58372.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|183780|gb|AAA58629.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|254069|gb|AAB22977.1| Ref-1 [Homo sapiens]
gi|13436404|gb|AAH04979.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|28071072|emb|CAD61917.1| unnamed protein product [Homo sapiens]
gi|54697126|gb|AAV38935.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|60655677|gb|AAX32402.1| APEX nuclease 1 [synthetic construct]
gi|61358645|gb|AAX41600.1| APEX nuclease 1 [synthetic construct]
gi|63100763|gb|AAH95428.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|119586867|gb|EAW66463.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586868|gb|EAW66464.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586869|gb|EAW66465.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586870|gb|EAW66466.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586871|gb|EAW66467.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586872|gb|EAW66468.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|158255636|dbj|BAF83789.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 291 LLPALCDSKIRSKALGSDHCPITLYLAL 318
>gi|297694584|ref|XP_002824554.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Pongo abelii]
gi|395745632|ref|XP_003778302.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|395745635|ref|XP_003778303.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|146286035|sp|A2T7I6.1|APEX1_PONPY RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|124054149|gb|ABM89264.1| APEX1 [Pongo pygmaeus]
Length = 318
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRRFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 291 LLTALCDSKIRSKALGSDHCPITLYLAL 318
>gi|118138505|pdb|2ISI|A Chain A, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138506|pdb|2ISI|B Chain B, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138507|pdb|2ISI|C Chain C, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|443428279|pdb|4IEM|A Chain A, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428283|pdb|4IEM|B Chain B, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428287|pdb|4IEM|C Chain C, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428291|pdb|4IEM|D Chain D, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
Length = 317
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 55 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 111
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 112 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYV 171
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 172 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 230
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 231 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 289
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 290 LLPALCDSKIRSKALGSDHCPITLYLAL 317
>gi|296214367|ref|XP_002753758.1| PREDICTED: uncharacterized protein LOC100400557 isoform 1
[Callithrix jacchus]
gi|296214369|ref|XP_002753759.1| PREDICTED: uncharacterized protein LOC100400557 isoform 2
[Callithrix jacchus]
Length = 318
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLPHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 291 LLPALCDSKIRSKALGSDHCPITLYLAL 318
>gi|219478|dbj|BAA14381.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
Length = 318
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 291 LLPALCDSKIRSKALGSDHCPITLYLAL 318
>gi|299037|gb|AAB26054.1| APEX nuclease=major apurinic/apyrimidinic endonuclease [human,
Peptide, 317 aa]
Length = 317
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 55 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 111
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 112 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYV 171
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 172 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 230
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 231 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 289
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 290 LLPALCDSKIRSKALGSDHCPITLYLAL 317
>gi|229086305|ref|ZP_04218483.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
gi|228697000|gb|EEL49807.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
Length = 252
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 166/262 (63%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K +WNVNGLRA + K +EY+ E + DI LQ+I+ Q +V PE Y++
Sbjct: 1 MKFISWNVNGLRAVIAKGGFIEYLEETDTDIFCLQEIKLQSGQVDLNPEG-------YYV 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G +LTK++PL+V YG+ G+ +Q GR+IT +F+ F +T+Y PN+
Sbjct: 54 YWNYAVKKGYSGTAILTKKEPLSVTYGL-GIEEHDQEGRLITLEFEDFYMLTLYTPNAKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W++ YI ++L +I GDLNV + IDL NP N K G++ +E
Sbjct: 113 GLERLDYRMKWEEDILSYI-TKLDKKKPVIFCGDLNVAHKEIDLKNPKTNRKNPGFSDQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R+ F ++LD G +D +R+LYPD EGAY++WS+R +AR N GWRLDY +VSE+L + I
Sbjct: 172 RKRFTQILDEGFIDTYRYLYPDREGAYSWWSYR-MNARAKNIGWRLDYFIVSERLKDKIV 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I S+V GS HCPV L + L
Sbjct: 231 DAKINSEVMGSDHCPVELNMEL 252
>gi|60652565|gb|AAX28977.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 291 LLPALCDSKIRSKALGSDHCPITLYLAL 318
>gi|125490347|ref|NP_001074954.1| DNA-(apurinic or apyrimidinic site) lyase [Pan troglodytes]
gi|397481065|ref|XP_003811777.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481067|ref|XP_003811778.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481069|ref|XP_003811779.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|146286033|sp|A1YFZ3.1|APEX1_PANPA RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|146286034|sp|A2T6Y4.1|APEX1_PANTR RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|219474|dbj|BAA02633.1| APEX nuclease [Homo sapiens]
gi|1710232|gb|AAB50212.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|12803075|gb|AAH02338.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|14198174|gb|AAH08145.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|17939646|gb|AAH19291.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|30583311|gb|AAP35900.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|61358640|gb|AAX41599.1| APEX nuclease 1 [synthetic construct]
gi|61362429|gb|AAX42220.1| APEX nuclease 1 [synthetic construct]
gi|61362434|gb|AAX42221.1| APEX nuclease 1 [synthetic construct]
gi|121483845|gb|ABM54218.1| APEX1 [Pan paniscus]
gi|123981822|gb|ABM82740.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|123996645|gb|ABM85924.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|124111123|gb|ABM91939.1| APEX1 [Pan troglodytes]
gi|208965824|dbj|BAG72926.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|410220880|gb|JAA07659.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410220882|gb|JAA07660.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410220884|gb|JAA07661.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256572|gb|JAA16253.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256574|gb|JAA16254.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256576|gb|JAA16255.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294028|gb|JAA25614.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294030|gb|JAA25615.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294032|gb|JAA25616.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|1090503|prf||2019234A APEX nuclease
Length = 318
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 291 LLPALCDSKIRSKALGSDHCPITLYLAL 318
>gi|468371|gb|AAA21019.1| apurinic/apyrimidinic endonuclease [Rattus norvegicus]
Length = 316
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/304 (39%), Positives = 183/304 (60%), Gaps = 7/304 (2%)
Query: 28 RKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVK 87
+ + + K+S +K++ E + D ++ S + +K+ +WNV+GLRA +K
Sbjct: 16 KSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSASGKSATLKICSWNVDGLRAWIK 75
Query: 88 KNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTK 145
K ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL++
Sbjct: 76 KKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEGYSGVGLLSR 134
Query: 146 EKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYI 204
+ PL V YGI +Q GRVI A+F+ F +T YVPN+G L +++R WD+ F ++
Sbjct: 135 QCPLKVSYGIGEEEHDQEGRVIVAEFESFILVTAYVPNAGRGLVRLEYRQRWDEAFRKFL 194
Query: 205 QSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRH 263
+ +L S +++ GDLNV + IDL NP N K AG+T +E + F E+L L D+FRH
Sbjct: 195 K-DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQEAQGFGEMLQAVPLADSFRH 253
Query: 264 LYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVL 323
LYP+ AYT+W++ +AR N GWRLDY L+S+ L + D IRS GS HCP+ L
Sbjct: 254 LYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSQSLLPALCDSKIRSKALGSDHCPITL 312
Query: 324 RLSL 327
L+L
Sbjct: 313 YLAL 316
>gi|426232864|ref|XP_004010439.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Ovis aries]
Length = 318
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 166/263 (63%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK +++I EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 59 SATLKICSWNVDGLRAWIKKKG-LDWIKEEAPDILCLQETKCSENKLPVELQELSGLPHQ 117
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A++ F +T YVPN+G
Sbjct: 118 YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAGR 177
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 178 GLVRLEYRQCWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RRNFRELLDTG-LVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S+ L +
Sbjct: 237 RQGFGELLQAAPLTDSFRHLYPNRAYAYTFWTYM-MNARSKNVGWRLDYFLLSQSLLPAL 295
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 296 CDSKIRSKALGSDHCPITLYLAL 318
>gi|262067405|ref|ZP_06027017.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
gi|291378968|gb|EFE86486.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
Length = 253
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 163/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSAGQLD----LELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKE+PL+V YG+ G+ ++ GRVIT +F++F ITVY PNS +L+
Sbjct: 56 YAEKKGYSGTAIFTKEEPLSVSYGL-GIEEHDKEGRVITLEFEKFYMITVYTPNSKDELQ 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F Y+++ L +++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMVWEDEFRKYLKN-LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL++G D FR+ YPD E AY++WS+R +AR NN GWR+DY +VS+ L + D
Sbjct: 174 FTELLESGFTDTFRYFYPDLEHAYSWWSYR-ANARKNNTGWRIDYFIVSKALDKYLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + +GS HCPVVL L
Sbjct: 233 IHAQTEGSDHCPVVLFLDF 251
>gi|410961724|ref|XP_003987429.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Felis catus]
Length = 404
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 166/263 (63%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 145 SATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQ 203
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YVPN+G
Sbjct: 204 YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGR 263
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 264 GLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 322
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL+ L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S L +
Sbjct: 323 RQGFGELLEAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPAL 381
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 382 CDSKIRSKALGSDHCPITLYLAL 404
>gi|340758618|ref|ZP_08695204.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
gi|251835305|gb|EES63846.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
Length = 253
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/257 (44%), Positives = 165/257 (64%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA V+K ++Y EN DI +Q+ + QE ++ L YH +W
Sbjct: 1 MKLISWNVNGLRAAVQK-GFLDYFKNENADIFCIQETKLQEGQI----ELDLEGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK+KP+ V YG+ G+ ++ GRVIT +++ F ITVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKKKPIEVSYGL-GIEEHDKEGRVITLEYEDFYMITVYTPNSQEELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F +Y+ +L +II GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMSWEDEFRNYVM-KLDKLKPVIICGDLNVAHKEIDLKNPKSNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G +D+FRH YP+ GAY++WS+R +AR NN GWR+DY +VSE+L + ++
Sbjct: 174 FTELLENGFIDSFRHFYPEVTGAYSWWSYRF-NARKNNAGWRIDYFVVSERLKDIMEGAE 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +++ GS HCPVVL+L
Sbjct: 233 IHNEILGSDHCPVVLKL 249
>gi|213021237|ref|NP_001132943.1| DNA-(apurinic or apyrimidinic site) lyase [Sus scrofa]
gi|210062866|gb|ACJ06403.1| APEX nuclease 1 [Sus scrofa]
Length = 318
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 166/263 (63%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 59 SATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQ 117
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YVPN+G
Sbjct: 118 YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGR 177
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ L S+ +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKG-LASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S L +
Sbjct: 237 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPAL 295
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 296 CDSKIRSKALGSDHCPITLYLAL 318
>gi|150388422|ref|YP_001318471.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
gi|149948284|gb|ABR46812.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
Length = 251
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 163/258 (63%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACVKK ++Y E + DI +Q+ + QE ++ L Y +W
Sbjct: 1 MKLVSWNVNGIRACVKK-GFLDYFNEVDADIFCIQESKLQEGQI----ELDLEGYEQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKEKP++VKYG+ ++ GRV+T +F +F + VY PNS L+
Sbjct: 56 YAVKKGYSGTAVFTKEKPISVKYGVGEEEDEEEGRVLTLEFDQFYLVNVYTPNSKRGLER 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D RMIW+ F +++ EL + +I+ GDLNV + IDL NP N K+AG+T EER
Sbjct: 116 LDGRMIWEDEFRAHLK-ELDAIKPVILCGDLNVAHEEIDLKNPKSNKKSAGFTNEEREKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL +G +D+FR+ YPD EGAY++WS+ K AR N GWR+DY +VSE+L N +K+ I
Sbjct: 175 TELLTSGFIDSFRYFYPDLEGAYSWWSYMGK-ARERNAGWRIDYFVVSERLKNQLKEAAI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
+ GS HCPVVL L +
Sbjct: 234 HPQIMGSDHCPVVLELDI 251
>gi|403289383|ref|XP_003935839.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
gi|403289385|ref|XP_003935840.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
Length = 318
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLPHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 291 LLPALCDSKIRSKALGSDHCPITLYLAL 318
>gi|30585287|gb|AAP36916.1| Homo sapiens APEX nuclease (multifunctional DNA repair enzyme) 1
[synthetic construct]
gi|60653967|gb|AAX29676.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 291 LLPALCDSKIRSKALGSDHCPITLYLAL 318
>gi|423137872|ref|ZP_17125515.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371959030|gb|EHO76727.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 253
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 164/259 (63%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA VKK ++Y E+N DI LQ+ + ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAVKK-GFLDYFNEQNADIFCLQETKLSAGQLD----LELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ ++ GRVIT +F++F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKQEPLSVSYGL-GIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F Y+++ L ++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMVWEDEFRKYLKN-LEKKKPVVACGDLNVAHKEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G +D FR+ YP+ E Y++WS+R + AR NN GWR+DY +VS+ L N+ D
Sbjct: 174 FTELLDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYFVVSKGLEKNLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + ++GS HCPVVL L L
Sbjct: 233 IHTQIEGSDHCPVVLFLDL 251
>gi|296330017|ref|ZP_06872501.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676741|ref|YP_003868413.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153056|gb|EFG93921.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414985|gb|ADM40104.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 252
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 165/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA ++K + Y+ EE+ DI+ LQ+ + Q+ +V P+ YH+
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPDG-------YHV 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +K++PL V YGI G+ +Q GRVIT +F+ +TVY PNS
Sbjct: 54 YWNYAVKKGYSGTAVFSKQEPLRVMYGI-GIEEHDQEGRVITLEFENLFVMTVYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+RM W++ YI EL +I+ GDLNV Q IDL NP N AG++ +E
Sbjct: 113 GLERIDYRMQWEEALLSYIL-ELDKKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F LL+ G VD+FRH+YPD EGAY++WS+R AR N GWRLDY +VSE+L I+
Sbjct: 172 RGAFTRLLEAGFVDSFRHVYPDLEGAYSWWSYR-AGARDRNIGWRLDYFVVSERLEEQIE 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I +DV GS HCPV L +++
Sbjct: 231 DASISADVMGSDHCPVELMINI 252
>gi|325261710|ref|ZP_08128448.1| exodeoxyribonuclease III [Clostridium sp. D5]
gi|324033164|gb|EGB94441.1| exodeoxyribonuclease III [Clostridium sp. D5]
Length = 250
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 167/258 (64%), Gaps = 11/258 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RACV+K +E+ + + DI +Q+ + QE ++ L YH +W
Sbjct: 1 MKFISWNVNGIRACVQK-GFLEFFSQADADIFCIQETKMQEGQLS----LELEGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K +PL+V YGI G+ +Q GRVIT +++ F F+TVY PN+ +L
Sbjct: 56 YAVKKGYSGTAVFSKIEPLSVVYGI-GIEEHDQEGRVITLEYEDFYFVTVYTPNAQNELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F +++ +L N ++++GD+NV + IDL NP N K+AG++ EER+
Sbjct: 115 RLDYRMKWEDDFRAWLK-KLEENKPVVVTGDMNVAHKEIDLKNPKTNRKSAGFSDEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD G +D FR+ YPD+EG Y++WS+R + AR N GWR+DY VSE L + + D
Sbjct: 174 FTELLDAGFIDTFRYFYPDQEGIYSWWSYRFR-AREKNAGWRIDYFCVSECLKDRLVDAG 232
Query: 309 IRSDVQGSTHCPVVLRLS 326
I +D+ GS HCPVVL ++
Sbjct: 233 ILTDIMGSDHCPVVLEMN 250
>gi|294781992|ref|ZP_06747324.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
gi|340754328|ref|ZP_08691085.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|229423850|gb|EEO38897.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|294481803|gb|EFG29572.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
Length = 253
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 163/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSAGQLD----LELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKE+PL+V YG+ G+ ++ GRVIT +F++F ITVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKEEPLSVSYGL-GIEEHDKEGRVITLEFEKFYMITVYTPNSKDELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F Y+++ L +++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMVWEDEFRKYLKN-LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL++G +D FR+ YPD E AY++WS+R +AR NN GWR+DY +VS+ L + D
Sbjct: 174 FTELLESGFIDTFRYFYPDLEHAYSWWSYR-ANARKNNTGWRIDYFVVSKALEKYLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + +GS HCPVVL L
Sbjct: 233 IHAQTEGSDHCPVVLFLDF 251
>gi|260495692|ref|ZP_05815815.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
gi|260196757|gb|EEW94281.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
Length = 253
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 165/259 (63%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSAGQLD----LELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ ++ GRVIT +F++F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKQEPLSVSYGL-GIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F Y+++ L ++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMVWEDEFRKYLKN-LEKKKPVVACGDLNVAHKEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G +D FR+ YP+ E Y++WS+R + AR NN GWR+DY +VS+ L N+ D
Sbjct: 174 FTELLDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYFVVSKGLEKNLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + ++GS HCPVVL L+L
Sbjct: 233 IHTQIEGSDHCPVVLFLNL 251
>gi|157830335|pdb|1BIX|A Chain A, The Crystal Structure Of The Human Dna Repair Endonuclease
Hap1 Suggests The Recognition Of Extra-Helical
Deoxyribose At Dna Abasic Sites
Length = 287
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 25 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 81
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 82 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYV 141
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 142 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 200
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 201 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 259
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 260 LLPALCDSKIRSKALGSDHCPITLYLAL 287
>gi|432112926|gb|ELK35512.1| DNA-(apurinic or apyrimidinic site) lyase [Myotis davidii]
Length = 320
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 166/263 (63%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 61 SATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQ 119
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A++ F +T YVPN+G
Sbjct: 120 YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAGR 179
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ +L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 180 GLVRLEYRQRWDEAFRKFLK-DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 238
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY LVS L +
Sbjct: 239 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLVSHSLLPAL 297
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 298 CDSKIRSKALGSDHCPITLYLAL 320
>gi|380796163|gb|AFE69957.1| DNA-(apurinic or apyrimidinic site) lyase, partial [Macaca mulatta]
Length = 297
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 176/298 (59%), Gaps = 7/298 (2%)
Query: 34 KRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVE 93
K+S +K+D E + D ++ S +K+ +WNV+GLRA +KK ++
Sbjct: 3 KKSKTPAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKG-LD 61
Query: 94 YILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTKEKPLTV 151
++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL++ PL V
Sbjct: 62 WVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRHCPLKV 121
Query: 152 KYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRS 210
YGI +Q GRVI A+F F +T YVPN+G L +++R WD+ F +++ L S
Sbjct: 122 SYGIGEEEHDQEGRVIVAEFDSFVLVTTYVPNAGRGLVRLEYRQRWDEAFRKFLKG-LAS 180
Query: 211 NSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRHLYPDEE 269
+++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+FRHLYP+
Sbjct: 181 RKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTP 240
Query: 270 GAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP+ L L+L
Sbjct: 241 YAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 297
>gi|149692696|ref|XP_001505181.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Equus
caballus]
Length = 318
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 165/263 (62%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 59 SATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQ 117
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YVPN+G
Sbjct: 118 YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGR 177
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S L +
Sbjct: 237 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPAL 295
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 296 CDSKIRSKALGSDHCPITLYLAL 318
>gi|348577629|ref|XP_003474586.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Cavia
porcellus]
Length = 318
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/321 (38%), Positives = 189/321 (58%), Gaps = 13/321 (4%)
Query: 17 IPKKQVKFDIS------RKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTT 70
+PK+ K ++ +++ + K+S +K++ E + D ++ S +
Sbjct: 1 MPKRGKKGSVAEDGEEPKREPEAKKSKAGPKKNEKEEAGEGPALYEDPPDKKTSPSGKSA 60
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
+K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++ H +W
Sbjct: 61 TLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELSELSHQYW 119
Query: 131 IG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKL 187
SDK G GVGLL+++ P+ V YGI +Q GRVI A+F F +T YVPN+G L
Sbjct: 120 SAPSDKEGYSGVGLLSRQCPIKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGL 179
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T +ER+
Sbjct: 180 VRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQ 238
Query: 248 NFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S L + D
Sbjct: 239 GFGELLQAVPLADSFRHLYPNAAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCD 297
Query: 307 CIIRSDVQGSTHCPVVLRLSL 327
IRS GS HCP+ L L+L
Sbjct: 298 SKIRSKALGSDHCPITLYLAL 318
>gi|351701700|gb|EHB04619.1| DNA-(apurinic or apyrimidinic site) lyase [Heterocephalus glaber]
Length = 318
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 165/263 (62%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 59 SATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELSGLSHQ 117
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YVPN+G
Sbjct: 118 YWSAPSDKEGYSGVGLLSRQCPLKVTYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGR 177
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S L +
Sbjct: 237 RQGFGELLQAVPLTDSFRHLYPNAAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPAL 295
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 296 CDSKIRSKALGSDHCPITLYLAL 318
>gi|237740967|ref|ZP_04571448.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294784430|ref|ZP_06749721.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
gi|229431011|gb|EEO41223.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294488002|gb|EFG35357.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
Length = 253
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 163/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSAGQLD----LELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PLTV YG+ G+ ++ GRVIT +F++F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKQEPLTVSYGL-GIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+++ L +++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMTWEDEFRKYLKN-LEKKKPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G +D FR+ YP+ E Y++WS+R + AR NN GWR+DY +VS+ L N+ D
Sbjct: 174 FTELLDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYFVVSKGLEKNLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + ++GS HCPVVL L
Sbjct: 233 IHTQIEGSDHCPVVLILDF 251
>gi|407706141|ref|YP_006829726.1| hypothetical protein MC28_2905 [Bacillus thuringiensis MC28]
gi|407383826|gb|AFU14327.1| Exodeoxyribonuclease [Bacillus thuringiensis MC28]
Length = 252
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 162/259 (62%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVITKGGFLEYLEESNADIFCLQEIKLQSGQID----LNLEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFTKKEPLSVTYGL-GIEEHDQEGRVITLEFEDFYMITLYTPNSKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI+ +L +I GDLNV + IDL NP N K G++ EER
Sbjct: 116 RLDYRMEWEDDFRAYIK-QLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L+ G VD +RHLYP++EGAY++WS+R AR N GWRLDY +VS+++ I D
Sbjct: 175 FTRILEEGFVDTYRHLYPNQEGAYSWWSYR-MGARAKNIGWRLDYFVVSDRIKGQITDAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S++ GS HCPV L ++
Sbjct: 234 INSEIIGSDHCPVELHINF 252
>gi|223278420|ref|NP_001138591.1| DNA-(apurinic or apyrimidinic site) lyase [Canis lupus familiaris]
Length = 318
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 165/263 (62%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 59 SATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLPHQ 117
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YVPN+G
Sbjct: 118 YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDTFVLVTAYVPNAGR 177
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S L +
Sbjct: 237 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPAL 295
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 296 CDSKIRSKALGSDHCPITLYLAL 318
>gi|301788284|ref|XP_002929556.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Ailuropoda melanoleuca]
gi|301788286|ref|XP_002929557.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Ailuropoda melanoleuca]
gi|301788288|ref|XP_002929558.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 3
[Ailuropoda melanoleuca]
gi|281345899|gb|EFB21483.1| hypothetical protein PANDA_019762 [Ailuropoda melanoleuca]
Length = 318
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 165/263 (62%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 59 SATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELSGLSHQ 117
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YVPN+G
Sbjct: 118 YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGR 177
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S L +
Sbjct: 237 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPAL 295
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 296 CDSKIRSKALGSDHCPITLYLAL 318
>gi|423488860|ref|ZP_17465542.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
gi|423494585|ref|ZP_17471229.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|423498625|ref|ZP_17475242.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|401151646|gb|EJQ59092.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|401159283|gb|EJQ66668.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|402433215|gb|EJV65269.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
Length = 252
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 162/262 (61%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTKKEPLSVTYGL-GIEEHDQEGRVITLEFEDFYMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L +++ GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERLDYRMKWEDDFRAYIK-RLNEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F L+ G VD +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ + I
Sbjct: 172 REKFTRTLEEGFVDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDKIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
+ I S++ GS HCPV L ++
Sbjct: 231 EAKINSEIMGSDHCPVELHINF 252
>gi|419842315|ref|ZP_14365665.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|421501617|ref|ZP_15948576.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|386902224|gb|EIJ67066.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|402265769|gb|EJU15229.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 250
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 161/257 (62%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RAC+KK +EY ++ DI LQ+ +C +V L YH +W
Sbjct: 1 MKLISWNVNGIRACLKK-GFMEYFQAQDADIFCLQETKCSAGQV----ELDLKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ +Q GRVI +F+ F +TVY PNS +L+
Sbjct: 56 YAEKKGYSGTAIFTKKEPLSVSYGL-GIEEHDQEGRVICLEFEDFYMVTVYTPNSKNELE 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RMIW+ F +Y+ S+L +++ GD+NV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMIWEDEFRNYL-SKLNEKKPVVVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERNK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL G D+FR+LYPD AY++WS+R +AR NN GWR+DY +VS I++
Sbjct: 174 FTELLQAGFTDSFRYLYPDTLHAYSWWSYR-ANARKNNTGWRIDYFVVSNDWKEQIQEAE 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I ++ +GS HCPV L L
Sbjct: 233 IHAEQEGSDHCPVALYL 249
>gi|423616001|ref|ZP_17591835.1| exodeoxyribonuclease [Bacillus cereus VD115]
gi|401260538|gb|EJR66711.1| exodeoxyribonuclease [Bacillus cereus VD115]
Length = 252
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 161/259 (62%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ N DI LQ+I+ Q ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEASNADIFCLQEIKLQSGQID----LNLEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFTKKEPLSVTYGL-GIEEHDQEGRVITLEFEDFYMITLYTPNSKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI+ +L +I GDLNV + IDL NP N K G++ EER
Sbjct: 116 RLDYRMEWEDDFRAYIK-QLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L+ G VD +RHLYPD+EGAY++WS+R AR N GWRLDY +VS+++ I D
Sbjct: 175 FTRILEEGFVDTYRHLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSDRIKGQITDAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S++ GS HCPV L ++
Sbjct: 234 INSEIIGSDHCPVELHINF 252
>gi|6980832|pdb|1DEW|A Chain A, Crystal Structure Of Human Ape1 Bound To Abasic Dna
gi|6980833|pdb|1DEW|B Chain B, Crystal Structure Of Human Ape1 Bound To Abasic Dna
Length = 279
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 17 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 73
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 74 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYV 133
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 134 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 192
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 193 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 251
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 252 LLPALCDSKIRSKALGSDHCPITLYLAL 279
>gi|229031365|ref|ZP_04187367.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
gi|228729930|gb|EEL80908.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
Length = 252
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 163/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q+ ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQDGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +K++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFSKQEPLSVTYGL-GIEEHDQEGRVITVEFEGFYMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERLDYRMKWEDDFRAYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +L+ G +D +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ + I
Sbjct: 172 REKFTRILEEGFIDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDKIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
+ I S+V GS HCPV L ++
Sbjct: 231 EAKINSEVMGSDHCPVELHINF 252
>gi|336435960|ref|ZP_08615673.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
gi|336008000|gb|EGN38019.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
Length = 250
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/257 (43%), Positives = 162/257 (63%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV+K + E + DI +Q+ + QE ++ L Y+ +W
Sbjct: 1 MKLVSWNVNGLRACVQK-GFQDIFREIDADIFCVQETKMQEGQLD----LELDGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++P+ V YGI G+ +Q GRVIT +F+ F F+TVY PNS +LK
Sbjct: 56 YAVKKGYSGTAVFTKQEPIGVTYGI-GIEEHDQEGRVITCEFEDFYFVTVYTPNSQNELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+++ L ++++GD+NV IDL NP N + AG+T EER
Sbjct: 115 RLDYRMRWEDDFRAYLKA-LDEKKPVVVTGDMNVAHAEIDLKNPKSNRQNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD G +D FR+ YPD+EG Y++WS+R K AR N GWR+DY VSE++ + + D
Sbjct: 174 FTELLDAGFIDTFRYFYPDQEGIYSWWSYRFK-AREKNAGWRIDYFCVSERMKDRLSDAK 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +D+ GS HCPV L L
Sbjct: 233 ILTDIYGSDHCPVCLEL 249
>gi|6980804|pdb|1DE8|B Chain B, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980805|pdb|1DE8|A Chain A, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980812|pdb|1DE9|A Chain A, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
gi|6980813|pdb|1DE9|B Chain B, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
Length = 276
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 14 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 70
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 71 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYV 130
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 131 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 189
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 190 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 248
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 249 LLPALCDSKIRSKALGSDHCPITLYLAL 276
>gi|34763743|ref|ZP_00144662.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27886479|gb|EAA23735.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 253
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 163/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSAGQLD----LELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ ++ GRVIT +F++F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKQEPLSVSYGL-GIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+++ L +++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMTWEDEFRKYLKN-LEKKKPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G VD FR+ YP+ E Y++WS+R + AR NN GWR+DY +VS+ L N+ D
Sbjct: 174 FTELLDSGFVDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYFVVSKGLEKNLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + ++GS HCPVVL L
Sbjct: 233 IHTQIEGSDHCPVVLILDF 251
>gi|19703399|ref|NP_602961.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296328758|ref|ZP_06871272.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19713467|gb|AAL94260.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296154093|gb|EFG94897.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 253
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 164/259 (63%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSAGQLD----LELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ ++ GRVIT +F++F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKQEPLSVSYGL-GIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F Y+++ L +++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMVWEDEFRKYLKN-LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G +D FR+ YP+ E Y++WS+R + AR NN GWR+DY +VS+ L ++ D
Sbjct: 174 FTELLDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYFVVSKGLEKSLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S ++GS HCPVVL L
Sbjct: 233 IHSQIEGSDHCPVVLFLEF 251
>gi|229098205|ref|ZP_04229152.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|423441531|ref|ZP_17418437.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|423464605|ref|ZP_17441373.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|423533947|ref|ZP_17510365.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
gi|228685103|gb|EEL39034.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|402418192|gb|EJV50492.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|402420872|gb|EJV53143.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|402464166|gb|EJV95866.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
Length = 252
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 161/262 (61%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + K++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFMKKEPLSVTYGL-GIEEHDQEGRVITLEFEDFYMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ +L ++ GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERLDYRMEWEDDFRTYIK-QLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +L+ G VD +RHLYP++EGAY++WS+R AR N GWRLDY +VSE++ I
Sbjct: 172 REKFTRILEEGFVDTYRHLYPNQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERIKGQIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I S++ GS HCPV L ++
Sbjct: 231 DAKINSEIMGSDHCPVELHINF 252
>gi|311070625|ref|YP_003975548.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|419820989|ref|ZP_14344593.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
gi|310871142|gb|ADP34617.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|388474900|gb|EIM11619.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
Length = 252
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 165/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K Y+ EEN DI LQ+I+ Q+ ++ PE YH+
Sbjct: 1 MKLMSWNVNGLRALLTKMNFNSYLEEENVDIFCLQEIKLQDGQIKLEPEG-------YHV 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK++PL V YG+ G+ +Q GR+IT +F+ ITVY PN+
Sbjct: 54 YWNYAEKKGYSGTAIFTKKEPLAVTYGL-GIKEHDQEGRLITLEFENMYVITVYTPNAKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+RM W+ F YI++ L +++ GDLNV Q IDL NP N K AG++ +E
Sbjct: 113 GLERIDYRMDWEDAFLSYIKA-LDVKKPVVLCGDLNVAHQEIDLKNPKANRKNAGFSDQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F ++L+ G +D FR+L+PD+EGAY++WS+R +AR N GWRLDY +VSE+L I+
Sbjct: 172 RERFSQMLEEGFIDTFRYLHPDQEGAYSWWSYR-MNARAKNVGWRLDYFIVSERLKKQIR 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
I ++V GS HCPV L + L
Sbjct: 231 GAKICNEVMGSDHCPVELTIDL 252
>gi|178743|gb|AAA58371.1| apurinic endonuclease [Homo sapiens]
Length = 318
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 167/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SAKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS S HCP+ L L+L
Sbjct: 291 LLPALCDSKIRSKALASDHCPITLYLAL 318
>gi|423598952|ref|ZP_17574952.1| exodeoxyribonuclease [Bacillus cereus VD078]
gi|401237222|gb|EJR43679.1| exodeoxyribonuclease [Bacillus cereus VD078]
Length = 252
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 112/262 (42%), Positives = 162/262 (61%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK++P++V YG+ G+ +Q GRVIT +F+ F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTKKEPISVTYGL-GIEEHDQEGRVITLEFEDFYMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L +++ GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERLDYRMKWEDDFRAYIK-RLNEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F L+ G VD +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ + I
Sbjct: 172 REQFTRTLEEGFVDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDKIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
+ I S++ GS HCPV L ++
Sbjct: 231 EAKINSEIMGSDHCPVELHINF 252
>gi|256846719|ref|ZP_05552175.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
gi|256717939|gb|EEU31496.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
Length = 253
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 163/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSAGQLD----LELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V YG+ G+ ++ GRVIT +F++F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKQEPLSVSYGL-GIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+++ L +++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMTWEDEFRKYLKN-LEKKKPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G +D FR+ YP+ E Y++WS+R + AR NN GWR+DY +VS+ L N+ D
Sbjct: 174 FTELLDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYFVVSKGLEKNLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + ++GS HCPVVL L
Sbjct: 233 IHTQIEGSDHCPVVLILDF 251
>gi|163941424|ref|YP_001646308.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|229012920|ref|ZP_04170085.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|423661424|ref|ZP_17636593.1| exodeoxyribonuclease [Bacillus cereus VDM022]
gi|163863621|gb|ABY44680.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|228748174|gb|EEL98034.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|401301465|gb|EJS07054.1| exodeoxyribonuclease [Bacillus cereus VDM022]
Length = 252
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 112/262 (42%), Positives = 162/262 (61%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK++P++V YG+ G+ +Q GRVIT +F+ F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTKKEPISVTYGL-GIEEHDQEGRVITLEFEDFYMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L +++ GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERLDYRMKWEDDFRAYIK-RLNEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F L+ G VD +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ + I
Sbjct: 172 REKFTRTLEEGFVDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDKIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
+ I S++ GS HCPV L ++
Sbjct: 231 EAKINSEIMGSDHCPVELHINF 252
>gi|423385244|ref|ZP_17362500.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|423528399|ref|ZP_17504844.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
gi|401635300|gb|EJS53055.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|402452062|gb|EJV83881.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
Length = 252
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 164/259 (63%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K+ +EY+ E + DI LQ+I+ QE ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKDGFLEYLEESSADIFCLQEIKLQEGQID----LNLEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K++PL+V YG+ G+ +Q GR+IT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGL-GIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EER
Sbjct: 116 RLDYRMKWEDDFRSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L+ G VD +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ + I +
Sbjct: 175 FSCILEEGFVDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDQITEAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S+V GS HCPV L ++
Sbjct: 234 INSEVMGSDHCPVELHINF 252
>gi|384177745|ref|YP_005559130.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349596969|gb|AEP93156.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 252
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 163/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA ++K + Y+ EE+ DI+ LQ+ + Q+ +V PE YH+
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------YHV 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +K++PL V YGI GV +Q GRVIT +F+ +TVY PNS
Sbjct: 54 YWNYAVKKGYSGTAVFSKQEPLHVIYGI-GVEEHDQEGRVITLEFENVYVMTVYTPNSRR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+RM W++ YI EL +I+ GDLNV Q IDL NP N AG++ +E
Sbjct: 113 GLERIDYRMQWEEALLSYIL-ELEKKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F L+ G VD+FRH+YPD EGAY++WS+R AR N GWR+DY +VSE L I+
Sbjct: 172 REAFTRFLEAGFVDSFRHVYPDLEGAYSWWSYR-AGARDRNIGWRIDYFVVSESLKEQIE 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I +DV GS HCPV L +++
Sbjct: 231 DASISADVMGSDHCPVELIINI 252
>gi|332263793|ref|XP_003280936.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263795|ref|XP_003280937.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263797|ref|XP_003280938.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263799|ref|XP_003280939.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|441667374|ref|XP_004091971.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
Length = 318
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 164/263 (62%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 59 TATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQ 117
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YVPN+G
Sbjct: 118 YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGR 177
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ +++ L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 178 GLVRLEYRQRWDEALRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S L +
Sbjct: 237 RQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPAL 295
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 296 CDSKIRSKALGSDHCPITLYLAL 318
>gi|428281769|ref|YP_005563504.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
gi|291486726|dbj|BAI87801.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
Length = 252
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 164/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA ++K + Y+ EE+ DI+ LQ+ + Q+ +V PE YH+
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------YHV 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +K++PL V YGI G+ +Q GRVIT +F+ ITVY PNS
Sbjct: 54 YWNYAVKKGYSGTAVFSKQEPLQVIYGI-GLEEHDQEGRVITLEFENVFVITVYTPNSRR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+RM W++ YI EL +I+ GDLNV Q IDL NP N AG++ +E
Sbjct: 113 GLERIDYRMQWEEALLSYIL-ELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F L+ G VD+FRH+YPD EGAY++WS+R AR N GWR+DY +VSE+L I+
Sbjct: 172 REAFTRFLEAGFVDSFRHVYPDLEGAYSWWSYR-AGARDRNIGWRIDYFVVSERLKEQIE 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I +DV GS HCPV L +++
Sbjct: 231 DASISADVMGSDHCPVELIINI 252
>gi|357614743|gb|EHJ69244.1| ap endonuclease [Danaus plexippus]
Length = 630
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 162/257 (63%), Gaps = 7/257 (2%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG 132
K++ WNV+G+RA + K ++Y+ E PDI+ LQ+ +C D++P K++ YH +W+
Sbjct: 371 KIANWNVDGIRAWMGKGG-LDYLKYEKPDILCLQETKCALDKLPYEV-KNIPGYHAYWLS 428
Query: 133 SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
SDK G GVG+ T + + V+YG+ + GR+ITA++++F I YVPN+G KL ++
Sbjct: 429 SDKDGYAGVGIYTTKLAMNVQYGLQNEELDSEGRIITAEYEQFYLICTYVPNAGRKLVSL 488
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
R+ W+ F +++++ L +II GD+NV IDL NP N K AG+T EER
Sbjct: 489 PKRLKWNDEFREHVKA-LDEKKPVIICGDMNVAHNEIDLTNPKTNKKNAGFTEEERAGMT 547
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
ELL G VD FRH +P E+ AYT+WS+ S R N GWRLDY +VSE+L +I D IR
Sbjct: 548 ELLGDGFVDTFRHFHP-EKVAYTFWSYMANS-RAKNVGWRLDYFIVSERLLPSICDSSIR 605
Query: 311 SDVQGSTHCPVVLRLSL 327
+V GS HCP+ L L L
Sbjct: 606 GEVYGSDHCPIALYLHL 622
>gi|355668893|gb|AER94340.1| APEX nuclease 1 [Mustela putorius furo]
Length = 317
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 165/263 (62%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 58 SATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPVELQELPGLSHQ 116
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YVPN+G
Sbjct: 117 YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGR 176
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 177 GLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 235
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S L +
Sbjct: 236 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPAL 294
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 295 CDSKIRSKALGSDHCPITLYLAL 317
>gi|168205412|ref|ZP_02631417.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
gi|170663003|gb|EDT15686.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
Length = 250
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 158/254 (62%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACVKK ++Y E+ DI LQ+ + QE ++ L YH +W
Sbjct: 1 MKLISWNVNGLRACVKK-GFLDYFKSEDADIFCLQETKLQEGQID----LDLEGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL V YGI + + GRVIT +F+ F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKKEPLNVYYGINMEHHDKEGRVITLEFEDFFMVTVYTPNSQSELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F +Y+ EL S +++ GDLNV + IDL NP N K AG+T EER F
Sbjct: 116 LEYRMEWEDDFRNYLL-ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL +G +D FR+ PD EG Y++WS+R +AR NN GWR+DY LVS L + IK+ I
Sbjct: 175 STLLSSGFIDTFRYFNPDLEGIYSWWSYR-FNARKNNAGWRIDYFLVSNNLEDRIKEAFI 233
Query: 310 RSDVQGSTHCPVVL 323
+++ GS HCPV L
Sbjct: 234 DTEILGSDHCPVKL 247
>gi|166030570|ref|ZP_02233399.1| hypothetical protein DORFOR_00233 [Dorea formicigenerans ATCC
27755]
gi|346308967|ref|ZP_08851071.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
gi|166029572|gb|EDR48329.1| exodeoxyribonuclease III [Dorea formicigenerans ATCC 27755]
gi|345901516|gb|EGX71315.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
Length = 250
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 159/257 (61%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RAC K +++ E + DI +Q+ + QE ++ YH +W
Sbjct: 1 MKFISWNVNGIRACAGK-GFMDFFQETDADIFCIQETKMQEGQL----ELDTPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++P++V YG+ G+ +Q GRVIT +F+ F FITVY PNS +L
Sbjct: 56 YAKKKGYSGTAIFTKQEPISVSYGL-GIEEHDQEGRVITLEFEDFYFITVYTPNSQSELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W++ F Y++ +L +I GDLNV IDL NP N K AG+T EER+
Sbjct: 115 RLDYRMKWEEDFLTYLK-KLEETKPVIFCGDLNVAHTEIDLKNPKTNRKNAGFTDEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G VD FR+ YP++ G Y++WS+R SAR N GWR+DY VSE L + ++D
Sbjct: 174 FTELLNAGFVDTFRYFYPEQTGIYSWWSYRF-SARAKNAGWRIDYFCVSESLKDRLEDAK 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +D+ GS HCPV L +
Sbjct: 233 ILTDIMGSDHCPVELDI 249
>gi|334319618|ref|XP_001379263.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Monodelphis domestica]
Length = 320
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 113/263 (42%), Positives = 167/263 (63%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
++ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E ++P + +
Sbjct: 61 SSTLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSESKLPPELQDLPGLTYQ 119
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL+V YGI +Q GRVI A+F+ F +T YVPN+G
Sbjct: 120 YWSSPSDKEGYSGVGLLSRQCPLSVTYGIGEEEHDQEGRVIVAEFEAFVLVTAYVPNAGR 179
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ L + +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 180 GLVRLEYRQRWDEAFRKFLKG-LSAKKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 238
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S+ L +
Sbjct: 239 RQGFGELLQAVPLTDSFRHLYPEAAYAYTFWTYM-MNARAKNVGWRLDYFLLSQALLPAL 297
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 298 CDSKIRSKALGSDHCPITLLLAL 320
>gi|422315442|ref|ZP_16396878.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
gi|404592436|gb|EKA94265.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
Length = 253
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 162/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA +KK ++Y E+N DI LQ+ + ++ L YH +W
Sbjct: 1 MKLISWNVNGIRAAIKK-GFLDYFNEQNADIFCLQETKLSAGQLD----LELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKE+PL+V YG+ G+ ++ GRVIT +F++F ITVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKEEPLSVSYGL-GIEEHDKEGRVITLEFEKFYMITVYTPNSKDELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F Y+++ L +++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMVWEDEFRKYLKN-LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL++G +D FR+ YPD E Y++WS+R +AR NN GWR+DY +VS+ L + D
Sbjct: 174 FTELLESGFIDTFRYFYPDLEHVYSWWSYR-ANARKNNTGWRIDYFVVSKALEKYLVDAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + +GS HCPVVL L
Sbjct: 233 IHAQTEGSDHCPVVLFLDF 251
>gi|32024|emb|CAA42437.1| HAP1 [Homo sapiens]
Length = 318
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 167/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +E + F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQEAQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 291 LLPALCDSKIRSKALGSDHCPITLYLAL 318
>gi|426376144|ref|XP_004054867.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376146|ref|XP_004054868.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376148|ref|XP_004054869.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376150|ref|XP_004054870.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
Length = 318
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
+ +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLSYQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 291 LLPALCDSKIRSKALGSDHCPITLYLAL 318
>gi|317058758|ref|ZP_07923243.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
gi|313684434|gb|EFS21269.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
Length = 250
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 161/257 (62%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RAC+KK +EY ++ DI LQ+ +C +V L YH +W
Sbjct: 1 MKLISWNVNGIRACLKK-GFMEYFEAQDADIFCLQETKCSAGQV----ELDLKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++P++V YG+ G+ +Q GRVIT +F+ F +TVY PNS +L+
Sbjct: 56 YAVKKGYSGTAIFTKKEPISVSYGL-GIEEHDQEGRVITLEFEDFYMVTVYTPNSKNELE 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RMIW+ F Y+ ++L +++ GD+NV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMIWEDEFRSYL-AKLNEAKPVVVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERTK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL G D+FR+LYPD AY++WS+R +AR NN GWR+DY +VS I++
Sbjct: 174 FTELLKAGFTDSFRYLYPDRLHAYSWWSYR-ANARKNNTGWRIDYFVVSNDWKEQIQEAE 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I ++ +GS HCPV L L
Sbjct: 233 IHAEQEGSDHCPVALYL 249
>gi|167759302|ref|ZP_02431429.1| hypothetical protein CLOSCI_01649 [Clostridium scindens ATCC 35704]
gi|336422208|ref|ZP_08602360.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
gi|167663176|gb|EDS07306.1| exodeoxyribonuclease III [Clostridium scindens ATCC 35704]
gi|336009118|gb|EGN39116.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
Length = 250
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 157/257 (61%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RACV+K +E+ E + DI +Q+ + QE ++ YH +W
Sbjct: 1 MKFVSWNVNGIRACVQK-GFMEFFQEADADIFCIQESKMQEGQL----ELETPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++P++V YGI G+ +Q GRVIT +F+ + FITVY PNS +L
Sbjct: 56 YAKKKGYSGTAIFTKQEPISVSYGI-GIEEHDQEGRVITLEFEDYYFITVYTPNSQNELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y++ +L +I GDLNV + IDL NP N K AG+T EER
Sbjct: 115 RLPYRMQWEDDFLAYLK-KLEEAKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F L+D G +D FR+ YPD +G Y++WS+R SAR N GWR+DY VSE L + D
Sbjct: 174 FTSLVDAGFIDTFRYFYPDAQGIYSWWSYRF-SARAKNAGWRIDYFCVSESLEERLVDAK 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +DV GS HCP+VL +
Sbjct: 233 ILTDVMGSDHCPIVLEM 249
>gi|218231608|ref|YP_002368543.1| exodeoxyribonuclease III [Bacillus cereus B4264]
gi|218159565|gb|ACK59557.1| exodeoxyribonuclease III [Bacillus cereus B4264]
Length = 252
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 161/258 (62%), Gaps = 8/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ E + DI LQ+I+ QE ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKGEFLEYLEESSADIFCLQEIKLQEGQID----LNLEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + +K++PL+V YG+ +Q GR+IT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGLDIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLER 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EER F
Sbjct: 117 LDYRMKWEDDFRSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L+ G +D +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ + I + I
Sbjct: 176 SSILEEGFIDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDQITEAKI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
S+V GS HCPV L ++
Sbjct: 235 NSEVMGSDHCPVELHINF 252
>gi|321313648|ref|YP_004205935.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430756766|ref|YP_007207426.1| exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
gi|320019922|gb|ADV94908.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430021286|gb|AGA21892.1| Exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 252
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 163/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA ++K + Y+ EE+ DI+ LQ+ + Q+ +V PE YH+
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------YHV 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +K++PL V YGI GV +Q GRVIT +F+ +TVY PNS
Sbjct: 54 YWNYAVKKGYSGTAVFSKQEPLQVIYGI-GVEEHDQEGRVITLEFENVFVMTVYTPNSRR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+RM W++ YI EL +I+ GDLNV Q IDL NP N AG++ +E
Sbjct: 113 GLERIDYRMQWEEALLSYIL-ELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F L+ G VD+FRH+YPD EGAY++WS+R AR N GWR+DY +VSE L I+
Sbjct: 172 REAFTRFLEAGFVDSFRHVYPDLEGAYSWWSYR-AGARDRNIGWRIDYFVVSESLKEQIE 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I +DV GS HCPV L +++
Sbjct: 231 DASISADVMGSDHCPVELIINI 252
>gi|386760800|ref|YP_006234017.1| ExoA protein [Bacillus sp. JS]
gi|384934083|gb|AFI30761.1| ExoA [Bacillus sp. JS]
Length = 252
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 164/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA ++K + Y+ EE+ DI+ LQ+ + Q+ +V PE YH+
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------YHV 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +K++PL V YGI G+ +Q GRVIT +F+ +T+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAVFSKQEPLRVMYGI-GIEEHDQEGRVITLEFENVFVMTIYTPNSRR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+RM W++ YI EL +I+ GDLNV Q IDL NP N K AG++ +E
Sbjct: 113 GLERIDYRMQWEEALLSYIL-ELDKKKPVILCGDLNVAHQEIDLKNPKANRKNAGFSDQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F LL+ G VD+FRH+YPD EGAY++WS+R AR N GWR+DY +VSE L I+
Sbjct: 172 RGAFSRLLEAGYVDSFRHVYPDLEGAYSWWSYR-AGARDRNIGWRIDYFVVSESLKEQIE 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I DV GS HCPV L +++
Sbjct: 231 DAGISKDVMGSDHCPVELIINI 252
>gi|417409485|gb|JAA51243.1| Putative exodeoxyribonuclease iii, partial [Desmodus rotundus]
Length = 301
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 114/263 (43%), Positives = 167/263 (63%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 42 SATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQ 100
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVG+L+++ PL V YGI +Q GRVI A++ F +T YVPN+G
Sbjct: 101 YWSAPSDKEGYSGVGILSRQCPLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAGR 160
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ + S+ +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 161 GLVRLEYRQRWDEAFRKFLKG-VASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 219
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL LVD+FRHLYP+ AYT+W++ +AR N GWRLDY LVS L +
Sbjct: 220 RQGFGELLQAVPLVDSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLVSHSLLPAL 278
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 279 CDSKIRSKALGSDHCPITLYLAL 301
>gi|229174398|ref|ZP_04301930.1| Exodeoxyribonuclease [Bacillus cereus MM3]
gi|228608958|gb|EEK66248.1| Exodeoxyribonuclease [Bacillus cereus MM3]
Length = 252
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 164/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q+ ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNVDIFCLQEIKLQDGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTKKEPLSVTYGL-GIEEHDQEGRVITLEFEDFYMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ +L ++ GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERLDYRMKWEDDFRAYIK-QLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +L+ G +D +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ + I
Sbjct: 172 REKFTCILEEGFIDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDKIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
+ I S+V GS HCPV L ++
Sbjct: 231 EAKINSEVMGSDHCPVELHINF 252
>gi|423401446|ref|ZP_17378619.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
gi|401654436|gb|EJS71979.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
Length = 252
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 112/262 (42%), Positives = 163/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E + DI LQ+I+ Q+ ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQDGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +K++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFSKKEPLSVTYGL-GIEEHDQEGRVITLEFEDFYMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L ++ GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERLDYRMKWEDDFRAYIK-RLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +L+ G +D +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ N I
Sbjct: 172 REKFTRILEEGFIDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKNQIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
+ I S+V GS HCPV L ++
Sbjct: 231 EAEINSEVMGSDHCPVELHINF 252
>gi|255280445|ref|ZP_05345000.1| exodeoxyribonuclease III [Bryantella formatexigens DSM 14469]
gi|255268910|gb|EET62115.1| exodeoxyribonuclease III [Marvinbryantia formatexigens DSM 14469]
Length = 253
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 161/258 (62%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRACV+K +EY E + DI +Q+ + QE ++ L YH +W
Sbjct: 4 KMISWNVNGLRACVQK-GFLEYFKEADADIFCIQESKLQEGQI----ELPLEGYHQYWNY 58
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + +KE+PL+V YGI G+ +Q GRVIT +F + +TVY PNS +L
Sbjct: 59 AKKKGYSGTAVFSKEEPLSVSYGI-GIEEHDQEGRVITLEFDTYYLVTVYTPNSQNELAR 117
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W++ F Y++ L N +I GDLNV + IDL NP N K AG+T EER F
Sbjct: 118 LPYRMTWEEAFLAYLKG-LEKNKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKF 176
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
++L+ G +D +R+ YP++EG Y++WS+R + AR N GWR+DY VSE L + + D I
Sbjct: 177 SQILENGFIDTYRYFYPEQEGVYSWWSYRFR-AREKNAGWRIDYFCVSECLKDRLVDARI 235
Query: 310 RSDVQGSTHCPVVLRLSL 327
+++ GS HCPV L++ +
Sbjct: 236 HTEITGSDHCPVELQIEV 253
>gi|156543084|ref|XP_001605156.1| PREDICTED: recombination repair protein 1-like isoform 1 [Nasonia
vitripennis]
gi|345493726|ref|XP_003427141.1| PREDICTED: recombination repair protein 1-like isoform 2 [Nasonia
vitripennis]
Length = 391
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 112/276 (40%), Positives = 170/276 (61%), Gaps = 8/276 (2%)
Query: 53 QVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQE 112
++ FD + Y +K+ TWNV+G+RA +KKN + Y+ E+ DI+ALQ+ +C+
Sbjct: 123 EINFDCEKVNADGEKYN--IKICTWNVSGIRAVLKKNG-MTYLEREDADIIALQETKCET 179
Query: 113 DEVPESFRKSLSHYHMFWIGSDK-GQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFK 171
++P+ + L Y +++ S K G G+ L +K++P+ + G+ + GR+ITA+++
Sbjct: 180 KKIPDEVK--LKGYTRYFLDSKKAGYCGMALYSKKEPIDISMGLDEEFDDEGRLITAEYE 237
Query: 172 RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLAN 231
F + VYVPN+G KL + R+ W++ F +IQ +L +II GD+NV Q IDL N
Sbjct: 238 HFYLVNVYVPNAGNKLVTLPKRLKWNEAFKKHIQ-DLDKKKPVIICGDMNVAHQEIDLKN 296
Query: 232 PDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRL 291
P N K AG+T EER + L G VD FR LYPD+ AYT+W++ N +AR N GWRL
Sbjct: 297 PKTNTKNAGFTKEERDGMTDFLQAGFVDTFRLLYPDKTDAYTFWAYFN-NARSKNIGWRL 355
Query: 292 DYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
DY++VSE++ N + D + R V GS HCPVV +L
Sbjct: 356 DYYIVSEKIKNKVCDVVNRDQVFGSDHCPVVFYANL 391
>gi|423418359|ref|ZP_17395448.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
gi|401106632|gb|EJQ14593.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
Length = 252
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 160/262 (61%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPEE-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTKKEPLSVTYGL-GIEEHDQEGRVITLEFEDFHMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERLDYRMKWEDDFRAYIK-RLDKKKPVIFCGDLNVSHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F ++L+ G VD +R LYP++EGAY++WS+R AR N GWRLDY + SE+L + I
Sbjct: 172 REKFTKILEEGFVDTYRFLYPEQEGAYSWWSYR-MGARAKNIGWRLDYFVTSERLKHKIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I S++ GS HCPV L +
Sbjct: 231 DAKINSEIMGSDHCPVELHMDF 252
>gi|223278400|ref|NP_788782.2| DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|113912167|gb|AAI22611.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Bos taurus]
gi|296483354|tpg|DAA25469.1| TPA: DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|440900925|gb|ELR51950.1| DNA-(apurinic or apyrimidinic site) lyase [Bos grunniens mutus]
Length = 318
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 114/263 (43%), Positives = 166/263 (63%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 59 SATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPVELQELSGLSHQ 117
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A++ F +T YVPN+G
Sbjct: 118 YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAGR 177
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S+ L +
Sbjct: 237 RQGFGELLQAVPLTDSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSQSLLPAL 295
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 296 CDSKIRSKALGSDHCPITLYLAL 318
>gi|16081140|ref|NP_391968.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312070|ref|ZP_03593917.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316395|ref|ZP_03598200.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221321308|ref|ZP_03602602.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325591|ref|ZP_03606885.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402778258|ref|YP_006632202.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|452912770|ref|ZP_21961398.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
gi|585113|sp|P37454.1|EXOA_BACSU RecName: Full=Exodeoxyribonuclease
gi|467372|dbj|BAA05218.1| 3'-exo-deoxyribonuclease [Bacillus subtilis]
gi|2636635|emb|CAB16125.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|402483437|gb|AFQ59946.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|407962942|dbj|BAM56182.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7613]
gi|407966954|dbj|BAM60193.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7003]
gi|452117798|gb|EME08192.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
Length = 252
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 163/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA ++K + Y+ EE+ DI+ LQ+ + Q+ +V PE YH+
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPED-------YHV 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +K++PL V YGI GV +Q GRVIT +F+ +TVY PNS
Sbjct: 54 YWNYAVKKGYSGTAVFSKQEPLQVIYGI-GVEEHDQEGRVITLEFENVFVMTVYTPNSRR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+RM W++ YI EL +I+ GDLNV Q IDL NP N AG++ +E
Sbjct: 113 GLERIDYRMQWEEALLSYIL-ELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F L+ G VD+FRH+YPD EGAY++WS+R AR N GWR+DY +VSE L I+
Sbjct: 172 REAFTRFLEAGFVDSFRHVYPDLEGAYSWWSYR-AGARDRNIGWRIDYFVVSESLKEQIE 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I +DV GS HCPV L +++
Sbjct: 231 DASISADVMGSDHCPVELIINI 252
>gi|229197850|ref|ZP_04324566.1| Exodeoxyribonuclease [Bacillus cereus m1293]
gi|228585568|gb|EEK43670.1| Exodeoxyribonuclease [Bacillus cereus m1293]
Length = 252
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 161/259 (62%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA + K +EY+ E N DI LQ+I+ QE ++ ++ Y+ +W
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQEGQID----LNVEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +KE+PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFSKEEPLSVTYGL-GIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EER
Sbjct: 116 RLDYRMKWEDDFRVYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L+ G +D +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ + I
Sbjct: 175 FTCILEEGFIDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDQITAAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S+V GS HCPV L ++
Sbjct: 234 INSEVMGSDHCPVELHINF 252
>gi|315917146|ref|ZP_07913386.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
gi|313691021|gb|EFS27856.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
Length = 250
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 161/257 (62%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RAC+KK +EY ++ DI LQ+ +C +V L YH +W
Sbjct: 1 MKLISWNVNGIRACLKK-GFMEYFEAQDADIFCLQETKCSAGQV----ELDLKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++P++V YG+ G+ +Q GRVIT +F+ F +TVY PNS +L+
Sbjct: 56 YAVKKGYSGTAIFTKKEPISVSYGL-GIEEHDQEGRVITLEFEDFYMVTVYTPNSKNELE 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F Y+ ++L +++ GD+NV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMVWEDEFRSYL-AKLNEAKPVVVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERSK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL G D+FR+LYPD AY++WS+R +AR NN GWR+DY +VS I++
Sbjct: 174 FTELLKAGFTDSFRYLYPDRLHAYSWWSYR-ANARKNNTGWRIDYFVVSNDWKEQIQEAE 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I ++ +GS HCPV L L
Sbjct: 233 IHAEQEGSDHCPVALYL 249
>gi|443631581|ref|ZP_21115762.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443349386|gb|ELS63442.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 252
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 164/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA ++K + Y+ EE+ DI+ LQ+ + Q+ +V PE YHM
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------YHM 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +K++P V YGI G+ +Q GRVIT +F+ +TVY PN+
Sbjct: 54 YWNYAVKKGYSGTAVFSKQEPQRVMYGI-GIEEHDQEGRVITLEFENMFVMTVYTPNAKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+RM W++ YI EL +I+ GDLNV Q IDL NP N AG++ +E
Sbjct: 113 GLERIDYRMQWEEDLLSYIL-ELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F L+ G +D+FRH+YPD EGAY++WS+R AR N GWR+DY +VSE+L + I+
Sbjct: 172 RGAFTRFLEAGFIDSFRHVYPDLEGAYSWWSYR-AGARDRNIGWRIDYFVVSERLKDQIE 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I +DV GS HCPV L +++
Sbjct: 231 DASISADVMGSDHCPVELMINI 252
>gi|182626631|ref|ZP_02954375.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|422345838|ref|ZP_16426752.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
gi|177908025|gb|EDT70604.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|373227503|gb|EHP49817.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
Length = 250
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 158/254 (62%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACVKK ++Y E+ DI LQ+ + QE ++ L YH +W
Sbjct: 1 MKLISWNVNGLRACVKK-GFLDYFKSEDADIFCLQETKLQEGQID----LDLEGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL V YGI + + GRVIT +F+ F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKKEPLNVYYGINMEHHDKEGRVITLEFEDFFMVTVYTPNSQSELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F +Y+ EL S +++ GDLNV + IDL NP N K AG+T EER F
Sbjct: 116 LEYRMEWEDDFRNYLL-ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL +G +D FR+ PD EG Y++WS+R +AR NN GWR+DY LVS L + IK+ I
Sbjct: 175 STLLSSGFIDTFRYFNPDLEGVYSWWSYR-FNARKNNAGWRIDYFLVSNNLEDRIKEASI 233
Query: 310 RSDVQGSTHCPVVL 323
+++ GS HCPV L
Sbjct: 234 DTEILGSDHCPVKL 247
>gi|229162671|ref|ZP_04290628.1| Exodeoxyribonuclease [Bacillus cereus R309803]
gi|228620553|gb|EEK77422.1| Exodeoxyribonuclease [Bacillus cereus R309803]
Length = 252
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 163/259 (62%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q+ ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQDGQID----LNLEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGL-GIEEHDQEGRVITLEFEDFHMITLYTPNSKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EER
Sbjct: 116 RLDYRMKWEDDFRAYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L+ G +D +R+LYPD++GAY++WS+R AR N GWRLDY +VSE++ N I +
Sbjct: 175 FTCVLEEGFIDTYRYLYPDQKGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKNQITEAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S+V GS HCPV L ++
Sbjct: 234 INSEVMGSDHCPVELHVNF 252
>gi|418030667|ref|ZP_12669152.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351471726|gb|EHA31839.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 252
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 164/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA ++K + Y+ EE+ DI+ LQ+ + Q+ +V PE YH+
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------YHV 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +K++PL V YGI GV +Q GRVIT +F+ +TVY PNS
Sbjct: 54 YWNYAVKKGYSGTAVFSKQEPLQVIYGI-GVEEHDQEGRVITLEFENVFVMTVYTPNSRR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+RM W++ YI EL +I+ GDLNV Q IDL NP N AG++ +E
Sbjct: 113 GLERIDYRMQWEEALLSYIL-ELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F L+ G VD+FRH+YPD EGAY++WS+R AR N GWR+DY +VSE+L I+
Sbjct: 172 RGAFTRFLEAGFVDSFRHVYPDLEGAYSWWSYR-AGARDRNIGWRIDYFVVSERLKEQIE 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I +DV GS HCPV L +++
Sbjct: 231 DASISADVMGSDHCPVELIINI 252
>gi|169334284|ref|ZP_02861477.1| hypothetical protein ANASTE_00682 [Anaerofustis stercorihominis DSM
17244]
gi|169259001|gb|EDS72967.1| exodeoxyribonuclease III [Anaerofustis stercorihominis DSM 17244]
Length = 251
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 164/258 (63%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ TWNVNGLRACV K +++ E + DI ++Q+ + Q+ ++ + Y +W
Sbjct: 1 MKLVTWNVNGLRACVNK-GFMDFFNEVDSDIFSVQETKLQKGQI----EMDIPGYEEYWD 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G +K KP++VK G+ ++ GRVITA+++ F + VY PNS +LK
Sbjct: 56 YAEKKGYSGTATFSKIKPISVKTGLEEEKFSKEGRVITAEYENFYLVNVYTPNSQNELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ +F DY+ EL +I+ GDLNV + IDL NP N K AG+T+EER
Sbjct: 116 LDYRMEWEDYFADYL-CELDKVKPVIMCGDLNVAHREIDLKNPKTNKKNAGFTIEERDKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL G VD++R+LYPD EG YT+WS+R +AR NN GWR+DY +VS+++ + IKD I
Sbjct: 175 TSLLKRGFVDSYRYLYPDIEGVYTWWSYRF-NARKNNAGWRIDYFIVSDRIKDKIKDVKI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
SDV GS HCPV+L + L
Sbjct: 234 FSDVMGSDHCPVLLDIEL 251
>gi|225026087|ref|ZP_03715279.1| hypothetical protein EUBHAL_00328 [Eubacterium hallii DSM 3353]
gi|224956574|gb|EEG37783.1| exodeoxyribonuclease III [Eubacterium hallii DSM 3353]
Length = 250
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/260 (45%), Positives = 162/260 (62%), Gaps = 17/260 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRACVKK ++ E + DI +Q+ + QE ++ PE Y
Sbjct: 1 MKLISWNVNGLRACVKK-GFEDFFKEADADIFCVQETKLQEGQIDFAPEG-------YEC 52
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK+ PL V GI G+ +Q GRVIT +F+ F F+TVY PNS
Sbjct: 53 YWNYAEKKGYSGTAVFTKKHPLKVWNGI-GMEEHDQEGRVITLEFEDFFFVTVYTPNSQS 111
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
+LK +D+RM W+ F +Y+Q EL +I++GDLNV + IDL NP N K AG+T EE
Sbjct: 112 ELKRLDYRMKWEDDFREYLQ-ELDKEKPVIMTGDLNVAHEEIDLKNPKTNKKNAGFTQEE 170
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F ELL G VD+FR+L P+ GAYT+WS+R K AR + GWR+DY +VSE+ I+
Sbjct: 171 RNKFTELLGAGFVDSFRYLNPELAGAYTWWSYRFK-AREKDAGWRIDYFVVSERWKEKIE 229
Query: 306 DCIIRSDVQGSTHCPVVLRL 325
D II V GS HCP+ L++
Sbjct: 230 DAIIYKTVMGSDHCPIGLQM 249
>gi|168209710|ref|ZP_02635335.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|168217871|ref|ZP_02643496.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
gi|170712212|gb|EDT24394.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|182380111|gb|EDT77590.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
Length = 250
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 158/254 (62%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACVKK ++Y E+ DI LQ+ + QE ++ L YH +W
Sbjct: 1 MKLISWNVNGLRACVKK-GFLDYFKSEDADIFCLQETKLQEGQID----LDLEGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL V YGI + + GRVIT +F+ F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKKEPLNVYYGINMEHHDKEGRVITLEFEDFFMVTVYTPNSQSELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F +Y+ EL S +++ GDLNV + IDL NP N K AG+T EER F
Sbjct: 116 LEYRMEWEDDFRNYLL-ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL +G +D FR+ PD EG Y++WS+R +AR NN GWR+DY LVS L + IK+ I
Sbjct: 175 STLLSSGFIDTFRYFNPDIEGVYSWWSYR-FNARKNNAGWRIDYFLVSNNLEDRIKEASI 233
Query: 310 RSDVQGSTHCPVVL 323
+++ GS HCPV L
Sbjct: 234 DTEILGSDHCPVKL 247
>gi|423611960|ref|ZP_17587821.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
gi|401246967|gb|EJR53311.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
Length = 252
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 160/262 (61%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK++P++V YG+ G+ +Q GRVIT +F F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTKKEPISVMYGL-GIEEHDQEGRVITLEFDDFYMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERLDYRMEWEDDFRAYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +L+ G +D +R+LYP++EGAY++WS+R AR N GWRLDY ++SE+L + I
Sbjct: 172 REKFTCVLEEGFIDTYRYLYPEQEGAYSWWSYR-MGARAKNIGWRLDYFVISERLKHKIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I S+V GS HCPV LR+
Sbjct: 231 DAKINSEVTGSDHCPVELRMGF 252
>gi|373497233|ref|ZP_09587764.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
gi|404366853|ref|ZP_10972230.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|313690462|gb|EFS27297.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|371963724|gb|EHO81271.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
Length = 253
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 161/257 (62%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA V+K ++Y EN DI +Q+ + QE ++ L YH +W
Sbjct: 1 MKLISWNVNGLRAAVQK-GFLDYFKNENADIFCVQETKLQEGQI----ELELEGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK+KP+ V YG+ G+ ++ GRVIT ++ F ITVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKKKPIEVSYGL-GIEEHDKEGRVITLEYDDFYMITVYTPNSQEELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F +Y+ +L +II GDLNV Q IDL NP N K AG++ EER
Sbjct: 115 RLSYRMSWEDEFRNYVM-KLDKLKPVIICGDLNVAHQEIDLKNPKSNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL G VD+FRH YP+ GAY++WS+R +AR NN GWR+DY +VSE+L + ++
Sbjct: 174 FTELLKNGFVDSFRHFYPELTGAYSWWSYRF-NARKNNAGWRIDYFVVSERLKDIMEGAE 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I ++ GS HCPVVL+L
Sbjct: 233 IHNETLGSDHCPVVLKL 249
>gi|229018928|ref|ZP_04175771.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|229025172|ref|ZP_04181596.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|423390009|ref|ZP_17367235.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
gi|228736105|gb|EEL86676.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|228742371|gb|EEL92528.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|401640925|gb|EJS58651.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
Length = 252
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 160/262 (61%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTKKEPLSVTYGL-GIDEHDQEGRVITLEFEDFHMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERLDYRMKWEDDFRAYIK-RLDKKKPVIFCGDLNVSHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F ++L+ G VD +R LYP++EGAY++WS+R AR N GWRLDY + SE+L + I
Sbjct: 172 REKFTKILEEGFVDTYRFLYPEQEGAYSWWSYR-MGARAKNIGWRLDYFVTSERLKHKIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I S++ GS HCPV L +
Sbjct: 231 DAKINSEIMGSDHCPVELHMDF 252
>gi|255523264|ref|ZP_05390235.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296186225|ref|ZP_06854630.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
gi|255513132|gb|EET89401.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296049493|gb|EFG88922.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
Length = 252
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 11/258 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K +E+ E N DI +Q+ + QE ++ L YH +W
Sbjct: 1 MKLISWNVNGLRACVTK-GFLEFFKEVNADIFCIQESKLQEGQI----ELELEGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK+KPL+ YGI G+ ++ GRVIT +F F +TVY PNS +L
Sbjct: 56 YAERKGYSGTAIFTKKKPLSFTYGI-GIEEHDKEGRVITLEFDDFYMVTVYTPNSKDQLA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F DY++S L N +I+ GDLNV + IDL NP N K AG+T EER
Sbjct: 115 RLEYRMKWENDFRDYLKS-LEKNKPVIMCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F E L G +D +R+ PD+EGAY++WS+R +AR NN GWR+DY VS+ L +
Sbjct: 174 FTEFLSAGFIDTYRYFNPDKEGAYSWWSYRF-NARKNNAGWRIDYFCVSDCLKERLVSAD 232
Query: 309 IRSDVQGSTHCPVVLRLS 326
I ++V GS HCPV L +S
Sbjct: 233 IHTEVMGSDHCPVELVIS 250
>gi|229168476|ref|ZP_04296199.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|423592321|ref|ZP_17568352.1| exodeoxyribonuclease [Bacillus cereus VD048]
gi|228614882|gb|EEK71984.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|401230563|gb|EJR37070.1| exodeoxyribonuclease [Bacillus cereus VD048]
Length = 252
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 161/262 (61%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK++P++V YG+ G+ +Q GRVIT +F F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTKKEPISVTYGL-GIEEHDQEGRVITLEFDDFYMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L +I GDLNV + +DL NP N K G++ EE
Sbjct: 113 GLERLDYRMEWEDDFRAYIK-RLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +L+ G +D +R+LYPD+EGAY++WS+R AR N GWRLDY ++SE+L + I
Sbjct: 172 REKFTCVLEAGFIDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVISERLKHKIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I S+V GS HCPV L ++
Sbjct: 231 DAKINSEVMGSDHCPVELHINF 252
>gi|182416804|ref|ZP_02948195.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237669009|ref|ZP_04528993.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379266|gb|EDT76765.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237657357|gb|EEP54913.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 254
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/261 (42%), Positives = 165/261 (63%), Gaps = 11/261 (4%)
Query: 70 TKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMF 129
T K+ +WNVNGLRACVKK ++Y E + DI +Q+ + QE ++ L Y+ +
Sbjct: 2 TLKKLISWNVNGLRACVKK-GFLDYFNEMDADIFCVQETKLQEGQID----LELEGYYDY 56
Query: 130 W-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIK 186
W KG G + TKEKP++VK G+ G+ + GRVIT ++ +F + VY PNS K
Sbjct: 57 WNYAEKKGYSGTAVFTKEKPISVKMGL-GIEEHDNEGRVITLEYDKFFLVNVYTPNSQQK 115
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
L +++RM W+ F +Y++ +L N +I+ GDLNV + IDL NP N K AG++ EER
Sbjct: 116 LARLEYRMSWEDVFRNYLK-DLEKNKPVILCGDLNVAHKEIDLKNPSSNRKNAGFSDEER 174
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
ELL++G D FR+ YPD EG Y++WS+R +AR NN GWR+DY +VS+ L + ++D
Sbjct: 175 SKMSELLNSGFTDTFRYFYPDIEGVYSWWSYR-FNARANNAGWRIDYFIVSQSLNDKLED 233
Query: 307 CIIRSDVQGSTHCPVVLRLSL 327
I + ++GS HCPV L ++L
Sbjct: 234 AKIHTSIEGSDHCPVELEINL 254
>gi|18310156|ref|NP_562090.1| exodeoxyribonuclease III [Clostridium perfringens str. 13]
gi|110802988|ref|YP_698514.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
gi|18144835|dbj|BAB80880.1| 3'-exo-deoxyribonuclease [Clostridium perfringens str. 13]
gi|110683489|gb|ABG86859.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
Length = 250
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 158/254 (62%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACVKK ++Y E+ DI LQ+ + QE ++ L YH +W
Sbjct: 1 MKLISWNVNGLRACVKK-GFLDYFKSEDADIFCLQETKLQEGQID----LDLEGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL V YGI + + GRVIT +F+ F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKKEPLNVYYGINMEHHDKEGRVITLEFEDFFMVTVYTPNSQSELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F +Y+ EL S +++ GDLNV + IDL NP N K AG+T EER F
Sbjct: 116 LEYRMEWEDDFRNYLL-ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL +G +D FR+ PD EG Y++WS+R +AR NN GWR+DY LVS L + IK+ I
Sbjct: 175 STLLSSGFIDTFRYFNPDLEGIYSWWSYR-FNARKNNAGWRIDYFLVSNNLEDRIKEASI 233
Query: 310 RSDVQGSTHCPVVL 323
+++ GS HCPV L
Sbjct: 234 DTEILGSDHCPVKL 247
>gi|449096551|ref|YP_007429042.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
gi|449030466|gb|AGE65705.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
Length = 252
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 163/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA ++K + Y+ EE+ DI+ LQ+ + Q+ +V PE YH+
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------YHV 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +K++PL V YGI GV +Q GRVIT +F+ +TVY PNS
Sbjct: 54 YWNYALKKGYSGTAVFSKQEPLQVIYGI-GVEEHDQEGRVITLEFENVFVMTVYTPNSRR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+RM W++ YI EL +I+ GDLNV Q IDL NP N AG++ +E
Sbjct: 113 GLERIDYRMQWEEALLSYIL-ELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F L+ G VD+FRH+YPD EGAY++WS+R AR N GWR+DY +VSE L I+
Sbjct: 172 RGAFTRFLEAGFVDSFRHVYPDLEGAYSWWSYR-AGARDRNIGWRIDYFVVSESLKEQIE 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I +DV GS HCPV L +++
Sbjct: 231 DASISADVMGSDHCPVELIINI 252
>gi|431795205|ref|YP_007222110.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785431|gb|AGA70714.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 250
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 157/256 (61%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RAC+ K +++ +E DI LQ+ + Q D++P L YH +W
Sbjct: 1 MKLISWNVNGIRACLNK-GFMDFFEKEQADIFCLQETKIQADQIP----FQLEGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL V YGI +Q GRVIT +F+ F +TVY PNS L
Sbjct: 56 YAQKKGYSGTAVFTKQEPLKVTYGIGKEEHDQEGRVITLEFEGFYLVTVYTPNSQRGLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W++ F ++++ L +I GDLN+ IDL NP N K AG++ EER F
Sbjct: 116 LEYRMTWEEEFLSFLKN-LEQAKPVIFCGDLNMAHTEIDLKNPKTNRKNAGFSDEERAKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL G +D FR+ YPD+ AYT+WS+ +AR NN GWR+DY VSE L + ++D +I
Sbjct: 175 GELLKKGFIDTFRYFYPDKTEAYTWWSYMF-NARANNAGWRIDYFCVSESLKDQLRDAVI 233
Query: 310 RSDVQGSTHCPVVLRL 325
S++ GS HCPV L +
Sbjct: 234 YSEILGSDHCPVGLEI 249
>gi|229134542|ref|ZP_04263353.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
gi|228648935|gb|EEL04959.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
Length = 252
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/262 (42%), Positives = 161/262 (61%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK++P++V YG+ G+ +Q GRVIT +F F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTKKEPISVTYGL-GIEEHDQEGRVITLEFDDFYMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L +I GDLNV + +DL NP N K G++ EE
Sbjct: 113 GLERLDYRMEWEDDFRAYIK-RLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +L+ G +D +R+LYPD+EGAY++WS+R AR N GWRLDY ++SE+L + I
Sbjct: 172 REKFTCVLEAGFIDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVISERLKHKIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I S++ GS HCPV L ++
Sbjct: 231 DAKINSEIMGSDHCPVELHINF 252
>gi|395502890|ref|XP_003755806.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Sarcophilus harrisii]
Length = 321
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E ++P +
Sbjct: 59 SGKPST--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSESKLPSELQDLP 115
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
+ +W +DK G GVGLL+++ PL V +GI +Q GRVI A+F+ F +T YV
Sbjct: 116 GLTYQYWSSPTDKEGYSGVGLLSRQCPLNVTFGIGEEEHDQEGRVIVAEFEAFVLVTAYV 175
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L + +++ GDLNV + IDL NP N K AG
Sbjct: 176 PNAGRGLVRLEYRQRWDEAFRKFLKG-LNAKKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 234
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S+
Sbjct: 235 FTPQERQGFGELLQAVPLTDSFRHLYPEAAYAYTFWTYM-MNARAKNVGWRLDYFLLSQS 293
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 294 LLPALCDSKIRSKALGSDHCPITLLLAL 321
>gi|374997767|ref|YP_004973266.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
gi|357216133|gb|AET70751.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
Length = 250
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 161/257 (62%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACVK N +++ +EN D+ +Q+ + QE+++P L Y+ +W
Sbjct: 1 MKLISWNVNGLRACVK-NGFLDFFTKENADVFCIQETKIQEEQIP----FQLDGYYSYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K +P+ V YGI G+ +Q GRVIT +++ F +TVY PNS L
Sbjct: 56 FAQKKGYSGTAIFSKTEPINVSYGI-GMEEHDQEGRVITLEYEPFFLVTVYTPNSQRGLA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+++ L + II GDLNV Q IDL NP N K AG+T EER
Sbjct: 115 RLDYRMKWEDDFLAYLKT-LEKSKPIIFCGDLNVAHQEIDLKNPKTNKKNAGFTSEERDK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ++L+ G +D+FR YP++ AYT+WS+ +AR NN GWR+DY VS L + +K+
Sbjct: 174 FSQVLNHGFIDSFRFFYPEQRDAYTWWSYM-FNARANNAGWRIDYFCVSAGLKDQLKNVS 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I SDV GS HCPV L +
Sbjct: 233 IYSDVYGSDHCPVGLEV 249
>gi|312067871|ref|XP_003136947.1| exodeoxyribonuclease III family protein [Loa loa]
Length = 306
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/267 (45%), Positives = 169/267 (63%), Gaps = 20/267 (7%)
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
++K+ +WNV GLRA +KK+ +++ENPDI+ALQ+ +C E VP + Y+ F
Sbjct: 50 EIKIISWNVAGLRAWIKKDGH-SILVKENPDIVALQETKCVE--VPNELQNG---YYSFL 103
Query: 131 IGSDK-GQGGVGLLTKEKPLTVKY--------GIPGVSNQRGRVITAKFKRFTFITVYVP 181
S+K G GGV LLTKE+P+ V Y G+ G N +GR+I A+++ + I YVP
Sbjct: 104 NTSEKSGHGGVLLLTKEEPIKVTYTFDDKSKSGLDG--NGKGRIIIAEYENYYLINAYVP 161
Query: 182 NSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAG 240
NSG L +D R WD ++ +I+ +L N I+ GDLNV Q IDLANP N KTAG
Sbjct: 162 NSGRGLVNLDKRKFWDDCYFSFIK-KLDLNKPIVYVGDLNVAHQEIDLANPKTNYNKTAG 220
Query: 241 YTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQL 300
+T +ER +F LLD G VD FR L P++EG YT+WS ++AR N GWRLDY +VSE++
Sbjct: 221 FTDQERNDFTRLLDAGFVDVFRRLNPEKEGVYTFWS-NMRNAREKNVGWRLDYFVVSERI 279
Query: 301 ANNIKDCIIRSDVQGSTHCPVVLRLSL 327
N +K+C I V+GS HCP+ L + L
Sbjct: 280 MNKVKECDILCSVKGSDHCPLSLTIEL 306
>gi|229157316|ref|ZP_04285394.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
gi|228626043|gb|EEK82792.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
Length = 252
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 164/259 (63%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q+ ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQDGQID----LNLEEYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGL-GIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI+ L ++ GDLNV + IDL NP N K G++ EER
Sbjct: 116 RLDYRMKWEDDFRVYIK-RLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L+ G +D +R+LYP++EGAY++WS+R AR+ N GWRLDY +VSE++ + I +
Sbjct: 175 FTCILEEGFIDTYRYLYPNQEGAYSWWSYR-MGARVKNIGWRLDYFVVSERMKDQITEAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S+V GS HCPV L ++
Sbjct: 234 INSEVMGSDHCPVELHINF 252
>gi|423367719|ref|ZP_17345151.1| exodeoxyribonuclease [Bacillus cereus VD142]
gi|401083372|gb|EJP91630.1| exodeoxyribonuclease [Bacillus cereus VD142]
Length = 252
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 160/262 (61%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK++P++V YG+ G+ +Q GRVIT +F F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTKKEPISVTYGL-GIEEHDQEGRVITLEFDDFYMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L +I GDLNV + +DL NP N K G++ EE
Sbjct: 113 GLERLDYRMEWEDDFRAYIK-RLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +L+ G +D +R+LYPD+EGAY++WS+R AR N GWRLDY ++SE+L + I
Sbjct: 172 REKFTCVLEEGFIDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVISERLKHKIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I S+V GS HCPV L +
Sbjct: 231 DAKINSEVMGSDHCPVELHIDF 252
>gi|393911285|gb|EFO27125.2| exodeoxyribonuclease III [Loa loa]
Length = 313
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/267 (45%), Positives = 169/267 (63%), Gaps = 20/267 (7%)
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
++K+ +WNV GLRA +KK+ +++ENPDI+ALQ+ +C E VP + Y+ F
Sbjct: 57 EIKIISWNVAGLRAWIKKDGH-SILVKENPDIVALQETKCVE--VPNELQNG---YYSFL 110
Query: 131 IGSDK-GQGGVGLLTKEKPLTVKY--------GIPGVSNQRGRVITAKFKRFTFITVYVP 181
S+K G GGV LLTKE+P+ V Y G+ G N +GR+I A+++ + I YVP
Sbjct: 111 NTSEKSGHGGVLLLTKEEPIKVTYTFDDKSKSGLDG--NGKGRIIIAEYENYYLINAYVP 168
Query: 182 NSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAG 240
NSG L +D R WD ++ +I+ +L N I+ GDLNV Q IDLANP N KTAG
Sbjct: 169 NSGRGLVNLDKRKFWDDCYFSFIK-KLDLNKPIVYVGDLNVAHQEIDLANPKTNYNKTAG 227
Query: 241 YTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQL 300
+T +ER +F LLD G VD FR L P++EG YT+WS ++AR N GWRLDY +VSE++
Sbjct: 228 FTDQERNDFTRLLDAGFVDVFRRLNPEKEGVYTFWS-NMRNAREKNVGWRLDYFVVSERI 286
Query: 301 ANNIKDCIIRSDVQGSTHCPVVLRLSL 327
N +K+C I V+GS HCP+ L + L
Sbjct: 287 MNKVKECDILCSVKGSDHCPLSLTIEL 313
>gi|113983|sp|P23196.2|APEX1_BOVIN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|118|emb|CAA40014.1| BAP 1 [Bos taurus]
Length = 318
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/263 (42%), Positives = 166/263 (63%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 59 SATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPVELQELSGLSHQ 117
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A++ F +T YVPN+G
Sbjct: 118 YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAGR 177
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S+ + +
Sbjct: 237 RQGFGELLQAVPLTDSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSQSVLPAL 295
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 296 CDSKIRSKALGSDHCPITLYLAL 318
>gi|395502892|ref|XP_003755807.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Sarcophilus harrisii]
Length = 320
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E ++P +
Sbjct: 58 SGKPST--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSESKLPSELQDLP 114
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
+ +W +DK G GVGLL+++ PL V +GI +Q GRVI A+F+ F +T YV
Sbjct: 115 GLTYQYWSSPTDKEGYSGVGLLSRQCPLNVTFGIGEEEHDQEGRVIVAEFEAFVLVTAYV 174
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L + +++ GDLNV + IDL NP N K AG
Sbjct: 175 PNAGRGLVRLEYRQRWDEAFRKFLKG-LNAKKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 233
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S+
Sbjct: 234 FTPQERQGFGELLQAVPLTDSFRHLYPEAAYAYTFWTYM-MNARAKNVGWRLDYFLLSQS 292
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 293 LLPALCDSKIRSKALGSDHCPITLLLAL 320
>gi|210617713|ref|ZP_03291707.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
gi|210149155|gb|EEA80164.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
Length = 250
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 158/257 (61%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACV+K +E+ E + DI +Q+ + Q ++ L YH +W
Sbjct: 1 MKLISWNVNGIRACVQK-GFLEFFQEADADIFCIQESKMQAGQLD----LELEGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V+YGI G+ ++ GRVIT +F+ F F+TVY PNS +L
Sbjct: 56 YAEKKGYSGTAVFTKKEPLSVQYGI-GIEEHDKEGRVITLEFEEFYFVTVYTPNSQSELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +R+ W+ F Y++ L +I +GDLNV IDL NP N K AG+T EER
Sbjct: 115 RLSYRIQWETDFLAYLKG-LEQKKPVIFAGDLNVAYAEIDLKNPKTNRKNAGFTDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F E+L G +D FR+ YP+ EG Y++WS+R SAR N GWR+DY VSE L + + D
Sbjct: 174 FGEVLKAGFIDTFRYFYPEMEGIYSWWSYRF-SARAKNAGWRIDYFCVSESLKDRLADAK 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +DV GS HCP+ L L
Sbjct: 233 ILTDVMGSDHCPIELDL 249
>gi|146286032|sp|A1YES6.1|APEX1_GORGO RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|120974134|gb|ABM46644.1| APEX1 [Gorilla gorilla]
Length = 318
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 166/268 (61%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIGSDKGQG--GVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
+ +W +G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLSYQYWSAPXXKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRRFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 291 LLPALCDSKIRSKALGSDHCPITLYLAL 318
>gi|423458084|ref|ZP_17434881.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
gi|401148468|gb|EJQ55961.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
Length = 252
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/262 (42%), Positives = 163/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E + DI LQ+I+ Q+ ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQDGQIDLNPEG-------YYA 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +K++PL V YG+ G+ +Q GRVIT +F+ F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFSKKEPLAVTYGL-GIEEHDQEGRVITLEFEDFYIITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ +L ++ GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERLDYRMKWEDDFRAYIK-QLDKKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +L+ G +D +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ + I
Sbjct: 172 REKFTRILEEGFIDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDKIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
+ I S+V GS HCPV L ++
Sbjct: 231 EAKINSEVMGSDHCPVELHINF 252
>gi|47568231|ref|ZP_00238934.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228986876|ref|ZP_04147003.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|47555059|gb|EAL13407.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228772825|gb|EEM21264.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 252
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 163/259 (62%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q+ ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQDGQID----LNLEEYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGL-GIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EER
Sbjct: 116 RLDYRMKWEDDFRVYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L+ G +D +R+LYP++EGAY++WS+R AR N GWRLDY +VSE++ + I +
Sbjct: 175 FTCILEEGFIDTYRYLYPNQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDQITEAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S+V GS HCPV L ++
Sbjct: 234 INSEVMGSDHCPVELHINF 252
>gi|423469951|ref|ZP_17446695.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
gi|423558712|ref|ZP_17535014.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|401190966|gb|EJQ98002.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|402437203|gb|EJV69227.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
Length = 252
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 158/262 (60%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + T+++P+ V YG+ G+ +Q GRVIT +F+ F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTRKEPIAVTYGL-GIEEHDQEGRVITLEFEDFYIITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERLDYRMEWEDDFRAYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +L+ G VD +R LYPD+EGAY++WS+R AR N GWRLDY + SE+L + I
Sbjct: 172 REKFTNILEEGFVDTYRFLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVTSERLKHKIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I S+V GS HCPV L +
Sbjct: 231 DAKINSEVMGSDHCPVELHIDF 252
>gi|229061336|ref|ZP_04198683.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|423511766|ref|ZP_17488297.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
gi|228717951|gb|EEL69596.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|402450027|gb|EJV81861.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
Length = 252
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 160/262 (61%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK++P++V YG+ G+ +Q GRVIT +F F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTKKEPISVTYGL-GIEEHDQEGRVITLEFDDFYMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L +I GDLNV + +DL NP N K G++ EE
Sbjct: 113 GLERLDYRMEWEDDFRAYIK-RLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +L+ G +D +R+LYPD+EGAY++WS+R AR N GWRLDY ++SE+L + I
Sbjct: 172 REKFTCVLEAGFIDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVISERLEHKII 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I S+V GS HCPV L +
Sbjct: 231 DAKINSEVMGSDHCPVELHIDF 252
>gi|423452962|ref|ZP_17429815.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
gi|401139521|gb|EJQ47083.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
Length = 252
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 158/262 (60%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNTDIFCLQEIKLQSGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + T+++P+ V YG+ G+ +Q GRVIT +F+ F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTRKEPIAVTYGL-GIEEHDQEGRVITLEFEDFYIITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERLDYRMEWEDDFRAYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +L+ G VD +R LYPD+EGAY++WS+R AR N GWRLDY + SE+L + I
Sbjct: 172 REKFTNILEEGFVDTYRFLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVTSERLKHKIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I S+V GS HCPV L +
Sbjct: 231 DAKINSEVMGSDHCPVELHIDF 252
>gi|284047996|ref|YP_003398335.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952217|gb|ADB47020.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 250
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 156/254 (61%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ TWNVNGLRAC+ K +++ DI+ +Q+ + Q ++ F YH +W
Sbjct: 1 MKLITWNVNGLRACMNK-GFADFMTAAGADIVCVQETKMQREQASFDF----PGYHEYWN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG G + +K +PL+V YG+ +Q GRVITA++ F + VY PNS L
Sbjct: 56 SAVKKGYSGTAVFSKTEPLSVTYGLGQEEHDQEGRVITAEYPDFYLVNVYTPNSQRGLTR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F DY R +I+ GDLNV Q IDL NPD N K AG+T EER F
Sbjct: 116 LEYRMQWEDVFQDYCAGLARKKP-VIVCGDLNVAAQPIDLKNPDSNHKNAGFTDEERAKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
++ LD G VD+FR LYPD+EGAYT+WS+ K AR N GWR+DY LVS+ + I+D II
Sbjct: 175 QQFLDHGFVDSFRSLYPDKEGAYTWWSYMFK-ARERNAGWRIDYFLVSQNGKDRIQDVII 233
Query: 310 RSDVQGSTHCPVVL 323
++V GS HCPV L
Sbjct: 234 HNEVMGSDHCPVEL 247
>gi|188585577|ref|YP_001917122.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350264|gb|ACB84534.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 251
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/257 (43%), Positives = 159/257 (61%), Gaps = 9/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+KK +EY E + DI +Q+ + QE ++ L Y +W
Sbjct: 1 MKLISWNVNGLRACLKK-GFLEYFNEVSGDIFCVQETKLQEGQID----LELPGYFQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGI-PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK +PLTV+YGI ++ GRVIT +F + + VY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKIQPLTVQYGIGEAKHDKEGRVITLEFCDYYLVNVYTPNSQRELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W+ F +Y+ + L S +I+ GDLNV + IDL NP N + AG+T EER
Sbjct: 116 LDYRLQWEDAFKNYLVN-LDSEKPVIVCGDLNVAHKEIDLKNPKNNKRNAGFTEEERNKL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YPD EGAYT+WS+ K AR N GWR+DY L S++L N + D I
Sbjct: 175 TELLNAGFIDTFRYFYPDTEGAYTWWSYITK-ARERNAGWRIDYFLASQKLDNWLTDAEI 233
Query: 310 RSDVQGSTHCPVVLRLS 326
+D+ GS HCPV L+L+
Sbjct: 234 HADIMGSDHCPVALKLA 250
>gi|228940815|ref|ZP_04103375.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228973735|ref|ZP_04134313.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228980291|ref|ZP_04140602.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|384187741|ref|YP_005573637.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676060|ref|YP_006928431.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452200118|ref|YP_007480199.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779396|gb|EEM27652.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|228785981|gb|EEM33982.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228818829|gb|EEM64894.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|326941450|gb|AEA17346.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175189|gb|AFV19494.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452105511|gb|AGG02451.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 252
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 163/259 (62%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ E + DI LQ+I+ QE ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQEGQID----LNLEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K++PL+V YG+ G+ +Q GR+IT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGL-GIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EER
Sbjct: 116 RLDYRMKWEDDFRSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L+ G VD +R+LYP++EGAY++WS+R AR N GWRLDY +VSE++ + I +
Sbjct: 175 FTCILEEGFVDTYRYLYPNQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDQITEAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S+V GS HCPV L ++
Sbjct: 234 INSEVMGSDHCPVELHINF 252
>gi|233305|gb|AAB19427.1| Rrp1=recombination repair protein 1 [Drosophila, Peptide, 253 aa]
Length = 253
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 161/257 (62%), Gaps = 5/257 (1%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNV GLRA +KK+ ++ I E PDI LQ+ +C D++PE + + YH +W+
Sbjct: 1 LKICSWNVAGLRAWLKKDG-LQLIDLEEPDIFCLQETKCANDQLPEEVTR-IPGYHPYWL 58
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
G GV + +K P+ V+YGI + GR+ITA++++F I VYVPNSG KL +
Sbjct: 59 CMPGGYAGVAIYSKIMPIHVEYGIGNEEFDDVGRMITAEYEKFYLINVYVPNSGRKLVNL 118
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+ RM W++ F Y++ +L + ++I GD+NV IDL NP N K AG+T EER
Sbjct: 119 EPRMRWEKLFQAYVK-KLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMT 177
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
ELL G VD FRHLYPD +GAYT+W++ +AR N GWRLDY LVSE+ + + IR
Sbjct: 178 ELLGLGFVDTFRHLYPDRKGAYTFWTYM-ANARARNVGWRLDYCLVSERFVPKVVEHEIR 236
Query: 311 SDVQGSTHCPVVLRLSL 327
S GS HCP+ + ++
Sbjct: 237 SQCLGSDHCPITIFFNI 253
>gi|359412352|ref|ZP_09204817.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
gi|357171236|gb|EHI99410.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
Length = 252
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRACV K +EY E + DI +Q+ + QE ++ L Y +W
Sbjct: 3 KLISWNVNGLRACVNK-GFLEYFKEADADIFCIQESKLQEGQID----LKLEGYKDYWNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+P++VK GI G+S + GRVIT +FK F + VY PNS L+
Sbjct: 58 AEKKGYSGTAVFTKEEPISVKNGI-GISEHDTEGRVITLEFKEFYLVNVYTPNSKQGLER 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM+W+ F Y++ EL +II GDLNV + IDL NP N K AG+T EER
Sbjct: 117 LDYRMVWEDVFRKYLK-ELEEKKPVIICGDLNVAHEDIDLKNPKANRKNAGFTDEERNKI 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D +R+ YP+ EG Y++WS+R +AR NN GWR+DY L SE L + + D I
Sbjct: 176 SELLEAGFIDTYRYFYPNTEGVYSWWSYR-FNARGNNAGWRIDYFLASESLKDKLVDAKI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
+V GS HCPV + ++L
Sbjct: 235 HMNVMGSDHCPVEVMVNL 252
>gi|228959948|ref|ZP_04121613.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|423628823|ref|ZP_17604572.1| exodeoxyribonuclease [Bacillus cereus VD154]
gi|228799691|gb|EEM46643.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|401268368|gb|EJR74416.1| exodeoxyribonuclease [Bacillus cereus VD154]
Length = 252
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 163/259 (62%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ E + DI LQ+I+ QE ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQEGQID----LNLEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K++PL+V YG+ G+ +Q GR+IT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGL-GIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EER
Sbjct: 116 RLDYRMKWEDDFRSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L+ G +D +R+LYP++EGAY++WS+R AR N GWRLDY +VSE++ + I +
Sbjct: 175 FSCILEEGFIDTYRYLYPNQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDQITEAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S+V GS HCPV L ++
Sbjct: 234 INSEVMGSDHCPVELHINF 252
>gi|187933475|ref|YP_001885926.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|187721628|gb|ACD22849.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 251
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 159/254 (62%), Gaps = 11/254 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRACVKK ++ + E N DI +Q+ + QE ++ +L Y+ +W
Sbjct: 3 KLISWNVNGLRACVKK-GFIDILKESNADIFCVQESKLQEGQID----LNLEGYYDYWNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + +KEKPL + GI G+ ++ GRV+T +F+ F + VY PNS KL
Sbjct: 58 AEKKGYSGTAVFSKEKPLNISLGI-GIEEHDKEGRVLTLEFEEFYLVNVYTPNSQQKLAR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
ID+RM W+ F Y+ +EL +I+ GDLNV + IDL NP N AG++ EER F
Sbjct: 117 IDYRMAWENDFRSYL-NELNKAKPVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL +G +D +R+ YPD+EGAY++WS+R +AR NN GWR+DY LVS+ + + D I
Sbjct: 176 GELLKSGFIDTYRYFYPDKEGAYSWWSYR-FNARANNAGWRIDYFLVSKDFEDRLVDAKI 234
Query: 310 RSDVQGSTHCPVVL 323
+ ++GS HCPV L
Sbjct: 235 HTQIEGSDHCPVEL 248
>gi|30263740|ref|NP_846117.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47529159|ref|YP_020508.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49186585|ref|YP_029837.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|65321063|ref|ZP_00394022.1| COG0708: Exonuclease III [Bacillus anthracis str. A2012]
gi|118478961|ref|YP_896112.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|165872421|ref|ZP_02217056.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167639873|ref|ZP_02398142.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170706859|ref|ZP_02897317.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|177652038|ref|ZP_02934584.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190568466|ref|ZP_03021373.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|196034121|ref|ZP_03101531.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196038388|ref|ZP_03105697.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|196044665|ref|ZP_03111900.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|218904866|ref|YP_002452700.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225865717|ref|YP_002751095.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227813360|ref|YP_002813369.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228916370|ref|ZP_04079939.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228928786|ref|ZP_04091820.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935036|ref|ZP_04097866.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228947401|ref|ZP_04109692.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|229092775|ref|ZP_04223913.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|229123254|ref|ZP_04252458.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|229185967|ref|ZP_04313138.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|229603277|ref|YP_002867975.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|254721165|ref|ZP_05182956.1| exodeoxyribonuclease III [Bacillus anthracis str. A1055]
gi|254735775|ref|ZP_05193481.1| exodeoxyribonuclease III [Bacillus anthracis str. Western North
America USA6153]
gi|254751095|ref|ZP_05203134.1| exodeoxyribonuclease III [Bacillus anthracis str. Vollum]
gi|254759412|ref|ZP_05211437.1| exodeoxyribonuclease III [Bacillus anthracis str. Australia 94]
gi|376267630|ref|YP_005120342.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|386737557|ref|YP_006210738.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|421510574|ref|ZP_15957465.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
gi|30258384|gb|AAP27603.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47504307|gb|AAT32983.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49180512|gb|AAT55888.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|118418186|gb|ABK86605.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|164711859|gb|EDR17401.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167512274|gb|EDR87651.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170128277|gb|EDS97146.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|172082407|gb|EDT67472.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190560470|gb|EDV14448.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|195993195|gb|EDX57153.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196024700|gb|EDX63372.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|196030796|gb|EDX69394.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|218539943|gb|ACK92341.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225789176|gb|ACO29393.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227006454|gb|ACP16197.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228597519|gb|EEK55168.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|228660030|gb|EEL15666.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|228690573|gb|EEL44354.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|228812254|gb|EEM58584.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228824606|gb|EEM70408.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228830871|gb|EEM76474.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843280|gb|EEM88359.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229267685|gb|ACQ49322.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|364513430|gb|AEW56829.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|384387409|gb|AFH85070.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|401819394|gb|EJT18573.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
Length = 252
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 162/259 (62%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA + K +EY+ E N DI LQ+I+ QE ++ ++ Y+ +W
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQEGQID----LNVEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGL-GIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F YI+ L +++ GDLNV + IDL NP N K G++ EER
Sbjct: 116 RLEYRMKWEDDFRAYIK-RLDEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L+ G +D +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ + I
Sbjct: 175 FTCILEEGFIDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDQITAAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S+V GS HCPV L ++
Sbjct: 234 INSEVMGSDHCPVELHINF 252
>gi|451821030|ref|YP_007457231.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787009|gb|AGF57977.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 252
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/258 (43%), Positives = 160/258 (62%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRAC K +++ E + DI +Q+ + QE ++ L Y +W
Sbjct: 3 KLISWNVNGLRACAGK-GFLDFFKEVDADIFCIQESKLQEGQID----LDLEGYKSYWNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+P++VK GI G+S + GRVITA++ F +TVY PNS L+
Sbjct: 58 AEKKGYSGTAVFTKEEPISVKKGI-GISEHDNEGRVITAEYDDFYLVTVYTPNSKQALER 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM+W+ F Y++ EL +I+ GDLNV + IDL NP N + AG+T EER
Sbjct: 117 LDYRMVWEDVFRKYLK-ELEEKKPVIVCGDLNVAHKEIDLKNPKANRRNAGFTDEERDKM 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D +RH YPD EG Y++WS+R +AR NN GWR+DY L SE L + ++ I
Sbjct: 176 SELLEAGFIDTYRHFYPDVEGVYSWWSYRF-NARANNAGWRIDYFLTSESLKDKLEAAKI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
++V GS HCPV L ++L
Sbjct: 235 HTEVMGSDHCPVELVINL 252
>gi|423518373|ref|ZP_17494854.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
gi|401161100|gb|EJQ68468.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
Length = 252
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 111/262 (42%), Positives = 161/262 (61%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ + N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEKSNADIFCLQEIKLQSGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK++P++V YG+ G+ +Q GRVIT +F F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTKKEPISVTYGL-GIEEHDQEGRVITLEFDDFYMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L ++ GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERVDYRMEWEDDFRAYIK-RLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +L+ G VD +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ + I
Sbjct: 172 REKFTRILEEGFVDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDKIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
+ I S++ GS HCPV L ++
Sbjct: 231 EAKINSEIMGSDHCPVELHINF 252
>gi|423669305|ref|ZP_17644334.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|423674566|ref|ZP_17649505.1| exodeoxyribonuclease [Bacillus cereus VDM062]
gi|401298432|gb|EJS04032.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|401310117|gb|EJS15450.1| exodeoxyribonuclease [Bacillus cereus VDM062]
Length = 252
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 112/262 (42%), Positives = 161/262 (61%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ + N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEKSNADIFCLQEIKLQSGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK++P++V YG+ G+ +Q GRVIT +F F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTKKEPISVTYGL-GIEEHDQEGRVITLEFDDFYMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L +I GDLNV + +DL NP N K G++ EE
Sbjct: 113 GLERLDYRMEWEDDFRAYIK-RLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +L+ G +D +R+LYPD+EGAY++WS+R AR N GWRLDY ++SE+L + I
Sbjct: 172 REKFTCVLEAGFIDTYRYLYPDQEGAYSWWSYR-MDARAKNIGWRLDYFVISERLKHKIT 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I S+V GS HCPV L ++
Sbjct: 231 DAKINSEVMGSDHCPVELHINF 252
>gi|255993955|ref|ZP_05427090.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
gi|255993623|gb|EEU03712.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
Length = 252
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 163/259 (62%), Gaps = 13/259 (5%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSH-YHMFWI 131
K +WNVNG+RAC+KK ++ + E+PD A+Q+ + QE + + L++ YH +W
Sbjct: 3 KFISWNVNGIRACIKK-GFLDVLEGESPDYFAVQETKMQEGQ-----EEILTNGYHQYWD 56
Query: 132 GSD-KGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G +L+KE+ ++ GI G+ ++ GRV+TA FK F + VYVPNS +L
Sbjct: 57 SAKRKGYSGTLVLSKEEAVSTSKGI-GIEEHDEEGRVVTADFKDFYLVNVYVPNSKPELA 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R W+ F DY+ +L +II GDLNV IDL NP N + G+T EER
Sbjct: 116 RLDYRQHWEDDFRDYV-VKLNKEKPVIICGDLNVAHTEIDLKNPKTNRRNPGFTDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G D FR+ YPD+EGAYT+WS+R +AR NN GWR+DY LVS + + I+D
Sbjct: 175 FTELLEAGFTDTFRYKYPDKEGAYTWWSYRF-NARKNNAGWRIDYFLVSNDVKDKIEDAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I SDV GS HCPVVL L +
Sbjct: 234 ILSDVYGSDHCPVVLELDI 252
>gi|169345728|ref|ZP_02865687.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169297128|gb|EDS79244.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 250
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 157/254 (61%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACVKK ++Y E+ DI LQ+ + QE ++ L Y +W
Sbjct: 1 MKLISWNVNGLRACVKK-GFLDYFKSEDADIFCLQETKLQEGQID----LDLEGYFQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL V YGI + + GRVIT +F+ F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKKEPLNVYYGINMEHHDKEGRVITLEFEDFFMVTVYTPNSQSELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F +Y+ EL S +++ GDLNV + IDL NP N K AG+T EER F
Sbjct: 116 LEYRMEWEDDFRNYLL-ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL +G +D FR+ PD EG Y++WS+R +AR NN GWR+DY LVS L + IK+ I
Sbjct: 175 STLLSSGFIDTFRYFNPDLEGVYSWWSYR-FNARKNNAGWRIDYFLVSNNLEDRIKEAFI 233
Query: 310 RSDVQGSTHCPVVL 323
+++ GS HCPV L
Sbjct: 234 DTEILGSDHCPVKL 247
>gi|404330185|ref|ZP_10970633.1| exodeoxyribonuclease III [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 252
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 163/259 (62%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNG RA +K E++ D +Q+ + Q +V F+ + Y +W
Sbjct: 1 MKFISWNVNGFRALQRKMDVNEWLKNTGADAFCIQETKLQRSQV--DFQTA--DYLQYWY 56
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G G ++TK KPL V YGI GV + GRVIT +++ + +TVY PN+ LK
Sbjct: 57 DAEKKGYSGTAIITKNKPLNVTYGI-GVDEFDHEGRVITLEYEDYYLMTVYTPNAQRDLK 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ FR+ W Q F ++I L ++ GDLNV Q+IDL NP N+K AG+T EER++
Sbjct: 116 RLGFRLKWGQAFTNFI-DRLDRRKPVVFCGDLNVAHQAIDLKNPKSNMKNAGFTAEERQD 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLDTG +D+FR+L+PD EGAY++WS+ +AR N GWR+DY ++SE+L IKD
Sbjct: 175 FSELLDTGFIDSFRYLHPDREGAYSWWSYMG-NARARNVGWRIDYFVISERLKKRIKDAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +DV+GS HCPV + L+L
Sbjct: 234 ILADVRGSDHCPVEIELAL 252
>gi|332800472|ref|YP_004461971.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|438003872|ref|YP_007273615.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332698207|gb|AEE92664.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|432180666|emb|CCP27639.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 251
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 118/258 (45%), Positives = 159/258 (61%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRAC+ K +EY + + DI A+Q+ + QE +V L Y +W
Sbjct: 1 MKAVSWNVNGLRACLGK-GFLEYFKDVDADIFAIQETKLQEGQV----ELELEGYEQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK PL+V YGI + GRVIT +F+ F F+ VYVPNS L
Sbjct: 56 YAVKKGYSGTAVFTKISPLSVAYGIDIEEHDAEGRVITLEFENFYFVNVYVPNSQRGLTR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F +Y+ +L +I GD NV Q IDL NP N K AG+T EER+
Sbjct: 116 LDYRMKWEDDFREYL-IKLDGIKPVICCGDKNVAHQEIDLKNPKSNRKNAGFTDEERQKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL++G +DAFR+LYPD++ AYT+WS+ K AR N GWR+DY +VSE+L + IKD I
Sbjct: 175 TELLNSGFIDAFRYLYPDKKDAYTWWSYMFK-AREKNVGWRIDYFIVSERLKDKIKDVEI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
S V GS HCPV+L + +
Sbjct: 234 HSHVMGSDHCPVLLDIDI 251
>gi|365155344|ref|ZP_09351722.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
gi|363628500|gb|EHL79253.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
Length = 254
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 158/256 (61%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV+K ++Y E + DI +Q+ + Q ++ L YH +W
Sbjct: 1 MKLVSWNVNGLRACVRK-GFLDYFQEVDADIFCVQETKLQSGQI----ELDLKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+PL+V YG+ V N+ GR+IT +F +F + VY PNS L
Sbjct: 56 YAEKKGYSGTAVFTKEEPLSVHYGLGDVENEPEGRIITLEFPKFYLVNVYTPNSQRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +R+ W+ Y+ +L + +++ GDLNV Q IDL NP N +G+T EER
Sbjct: 116 LPYRLEWEDRIRSYL-IDLDKDKPVLLCGDLNVAHQEIDLRNPKSNQGNSGFTKEERAKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++EGAYT+WS+ NK AR N GWR+DY + S++LAN IK+ I
Sbjct: 175 SELLNAGFIDTFRYFYPEKEGAYTWWSYINK-ARERNIGWRIDYFIASKRLANIIKNAEI 233
Query: 310 RSDVQGSTHCPVVLRL 325
S + GS HCP+VL L
Sbjct: 234 HSHIMGSDHCPIVLEL 249
>gi|75759849|ref|ZP_00739924.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228902244|ref|ZP_04066404.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|228966664|ref|ZP_04127710.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|402558959|ref|YP_006601683.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|423359274|ref|ZP_17336777.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|423561854|ref|ZP_17538130.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|434376797|ref|YP_006611441.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
gi|74492665|gb|EAO55806.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228793040|gb|EEM40596.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228857359|gb|EEN01859.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|401085146|gb|EJP93392.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|401202111|gb|EJR08976.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|401787611|gb|AFQ13650.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|401875354|gb|AFQ27521.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
Length = 252
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 159/258 (61%), Gaps = 8/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQID----LNLEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL+V YG+ +Q GR+IT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFTKKEPLSVTYGLEIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLER 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EER F
Sbjct: 117 LDYRMKWEDDFRSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L+ G +D +R+LY D+EGAY++WS+R AR N GWRLDY +VSE++ + I + I
Sbjct: 176 TCILEEGFIDTYRYLYSDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDQITEAKI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
S+V GS HCPV L ++
Sbjct: 235 NSEVMGSDHCPVELHINF 252
>gi|421893824|ref|ZP_16324317.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
gi|385273309|emb|CCG89689.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
Length = 251
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 161/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VK + ++ E + DI +Q+ + QE ++ L HY+ +W
Sbjct: 1 MKLISWNVNGLRAAVK-HGFLDVFKELDADIFCIQETKLQEGQI----ELELPHYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK+KPLTV+YG+ G+ +Q GRVIT +F++F IT Y PNS KLK
Sbjct: 56 YAEKKGYSGTAIFTKKKPLTVRYGL-GIEKHDQEGRVITLEFEKFYVITCYTPNSQPKLK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM WD F YI +L + +I GDLNV Q IDL N N K AG+T EER
Sbjct: 115 RLEYRMAWDDAFRAYI-DQLNQHKPVIFCGDLNVAHQEIDLKNDKTNHKNAGFTDEERNK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL++G D +R+ YP +EG Y++WS+R +AR NN GWR+DY + S+ L + D
Sbjct: 174 FTQLLNSGFTDTYRYFYPSKEGVYSWWSYRF-NARANNAGWRIDYFVSSKVLDQKLTDAQ 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCPV L L +
Sbjct: 233 IHTEIFGSDHCPVELDLDI 251
>gi|218898840|ref|YP_002447251.1| exodeoxyribonuclease III [Bacillus cereus G9842]
gi|218542018|gb|ACK94412.1| exodeoxyribonuclease III [Bacillus cereus G9842]
Length = 252
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 159/258 (61%), Gaps = 8/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKVQSGQID----LNLEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL+V YG+ +Q GR+IT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFTKKEPLSVTYGLEIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLER 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EER F
Sbjct: 117 LDYRMKWEDDFRSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L+ G +D +R+LY D+EGAY++WS+R AR N GWRLDY +VSE++ + I + I
Sbjct: 176 TCILEEGFIDTYRYLYSDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDQITEAKI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
S+V GS HCPV L ++
Sbjct: 235 NSEVMGSDHCPVELHINF 252
>gi|210622632|ref|ZP_03293292.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
gi|210154133|gb|EEA85139.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
Length = 250
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 161/258 (62%), Gaps = 17/258 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K +WNVNGLRACV K +++ E + DI LQ+ + QE ++ PE Y
Sbjct: 1 MKFISWNVNGLRACVTK-GFMDFFNEVDADIFCLQETKLQEGQIDLNPEG-------YES 52
Query: 129 FWIGSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W +DK G G + TK+KPL+V YGI G+ + GRVIT +F+ F F+TVY PNS
Sbjct: 53 YWNYADKKGYSGTAIFTKKKPLSVAYGI-GIDEHDHEGRVITLEFEDFYFVTVYTPNSQT 111
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
+LK +++RM W+ F Y+++ L S +++ GDLNV + IDL NP N K AG+T EE
Sbjct: 112 ELKRLEYRMRWEDDFRAYLKN-LDSKKPVVMCGDLNVAHKEIDLKNPKTNRKNAGFTDEE 170
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F E L++G +D FR+ YPD EG Y++WS+R +AR NN GWR+DY SE + + +
Sbjct: 171 RNKFTEFLESGFIDTFRYFYPDAEGMYSWWSYR-FNARKNNAGWRIDYFCTSESMKDRLV 229
Query: 306 DCIIRSDVQGSTHCPVVL 323
I ++V GS HCPV L
Sbjct: 230 SAKIHNEVLGSDHCPVEL 247
>gi|164688495|ref|ZP_02212523.1| hypothetical protein CLOBAR_02140 [Clostridium bartlettii DSM
16795]
gi|164602908|gb|EDQ96373.1| exodeoxyribonuclease III [Clostridium bartlettii DSM 16795]
Length = 252
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 156/254 (61%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RACV K +++ E + DI LQ+ + QE ++ L YH +W
Sbjct: 1 MKFISWNVNGIRACVTK-GFLDFFNEVDADIFCLQETKLQEGQI----ELDLPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++P++V YGI ++ GRVIT +F F F+TVY PNS +LK
Sbjct: 56 YAEKKGYSGTAIFTKQEPISVNYGIQIEEHDKEGRVITLEFDNFYFVTVYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y+ +L S +I+ GDLNV + IDL NP N K AG+T +ER F
Sbjct: 116 LDYRMKWEDDFRKYLL-KLNSKKGVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDQEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL++G +D +RH PD+EG Y++WS+R K AR N GWR+DY S+ L NN+ I
Sbjct: 175 TELLESGFIDTYRHFNPDKEGIYSWWSYRFK-AREKNAGWRIDYFCASKDLENNLVSADI 233
Query: 310 RSDVQGSTHCPVVL 323
+ + GS HCP+ L
Sbjct: 234 HTQILGSDHCPIEL 247
>gi|423483329|ref|ZP_17460019.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
gi|401140880|gb|EJQ48435.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
Length = 252
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 158/259 (61%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQID----LDLEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++P++V YG+ G+ +Q GRVIT +F F IT+Y PNS L+
Sbjct: 57 YALKKGYSGTAIFTKKEPISVTYGL-GIEEHDQEGRVITLEFDDFYMITLYTPNSKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI+ L ++ GDLNV + IDL NP N K G++ EER
Sbjct: 116 RLDYRMEWEDDFRAYIK-RLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+L+ G +D +R+LYP++EGAY++WS+R AR N GWRLDY ++SE+L + I D
Sbjct: 175 ITRVLEEGFIDTYRYLYPEQEGAYSWWSYR-MGARAKNIGWRLDYFIISERLKHKILDAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S+V GS HCPV L +
Sbjct: 234 INSEVMGSDHCPVELHMDF 252
>gi|229111211|ref|ZP_04240765.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|229146311|ref|ZP_04274682.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|296504242|ref|YP_003665942.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|423585849|ref|ZP_17561936.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|423641177|ref|ZP_17616795.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|423649605|ref|ZP_17625175.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|423656600|ref|ZP_17631899.1| exodeoxyribonuclease [Bacillus cereus VD200]
gi|228636944|gb|EEK93403.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|228672205|gb|EEL27495.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|296325294|gb|ADH08222.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|401233195|gb|EJR39691.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|401280238|gb|EJR86160.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|401282885|gb|EJR88782.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|401290341|gb|EJR96035.1| exodeoxyribonuclease [Bacillus cereus VD200]
Length = 252
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 163/259 (62%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ E + DI LQ+I+ QE ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQEGQID----LNLEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K++PL+V YG+ G+ +Q GR+IT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGL-GIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI+ L +I GDLNV + IDL NP N + G++ EER
Sbjct: 116 RLDYRMKWEDDFRSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRENPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L+ G +D +R+LYP++EGAY++WS+R AR N GWRLDY +VSE++ + I +
Sbjct: 175 FSCILEEGFIDTYRYLYPNQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDQITEAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S+V GS HCPV L ++
Sbjct: 234 INSEVMGSDHCPVELHINF 252
>gi|49478354|ref|YP_037804.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|301055229|ref|YP_003793440.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|423550511|ref|ZP_17526838.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
gi|49329910|gb|AAT60556.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|300377398|gb|ADK06302.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|401190127|gb|EJQ97177.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
Length = 252
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 162/259 (62%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA + K +EY+ E N DI +Q+I+ QE ++ ++ Y+ +W
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEESNADIFCVQEIKLQEGQID----LNVEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGL-GIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F YI+ L +++ GDLNV + IDL NP N K G++ EER
Sbjct: 116 RLEYRMKWEDDFRAYIK-RLDEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L+ G +D +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ + I
Sbjct: 175 FTCILEEGFIDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDQITAAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S+V GS HCPV L ++
Sbjct: 234 INSEVMGSDHCPVELHINF 252
>gi|168214660|ref|ZP_02640285.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|422874042|ref|ZP_16920527.1| exodeoxyribonuclease III [Clostridium perfringens F262]
gi|170713849|gb|EDT26031.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|380305037|gb|EIA17320.1| exodeoxyribonuclease III [Clostridium perfringens F262]
Length = 250
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 157/254 (61%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACVKK ++Y E+ DI LQ+ + QE ++ L Y +W
Sbjct: 1 MKLISWNVNGLRACVKK-GFLDYFKSEDADIFCLQETKLQEGQID----LDLEGYFQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL V YGI + + GRVIT +F+ F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKKEPLNVYYGINMEHHDKEGRVITLEFEDFFMVTVYTPNSQSELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F +Y+ EL S +++ GDLNV + IDL NP N K AG+T EER F
Sbjct: 116 LEYRMEWEDDFRNYLL-ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL +G +D FR+ PD EG Y++WS+R +AR NN GWR+DY LVS L + IK+ I
Sbjct: 175 STLLSSGFIDTFRYFNPDLEGVYSWWSYR-FNARKNNAGWRIDYFLVSNNLEDRIKEASI 233
Query: 310 RSDVQGSTHCPVVL 323
+++ GS HCPV L
Sbjct: 234 DTEILGSDHCPVKL 247
>gi|291546831|emb|CBL19939.1| exodeoxyribonuclease III [Ruminococcus sp. SR1/5]
Length = 251
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 159/259 (61%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RAC+ K E E + DI LQ+ +CQ+ +V + L YH +W
Sbjct: 1 MKFISWNVNGIRACITKGF-EERFHELDADIFCLQETKCQQGQV----KLELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ +G G + TK +PL+ YGI G+ ++ GRVIT +F + F+TVY PNS +L+
Sbjct: 56 YANRRGYSGTAIFTKREPLSAAYGI-GIEEHDKEGRVITLEFDEYYFVTVYTPNSQSELR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W++ F Y+ +L+ +I GDLNV Q IDL NP N K AG+T EER
Sbjct: 115 RLEYRMKWEEDFLAYLL-KLQEKKPVICCGDLNVAHQEIDLKNPKTNRKNAGFTDEERAC 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F L++G +D FR+ YPD+EG Y++WS+R + AR N GWR+DY LVS L ++D
Sbjct: 174 FTRALESGFIDTFRYFYPDKEGVYSWWSYRFR-AREKNAGWRIDYFLVSPSLKEKLQDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I ++ GS HCPV L + L
Sbjct: 233 IHGEIMGSDHCPVELDIDL 251
>gi|354558981|ref|ZP_08978234.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
gi|353545305|gb|EHC14757.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
Length = 251
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/257 (40%), Positives = 162/257 (63%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACV K +++ +EN DI ++Q+ + QE+++P L Y+ +W
Sbjct: 1 MKLISWNVNGIRACVNK-GFLDFFNKENADIFSIQETKVQEEQIP----FQLEGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K++PL ++YGI G+ +Q GRVIT +F++F +TVY PNS +L
Sbjct: 56 FAQKKGYSGTAIFSKKEPLNIRYGI-GIEEHDQEGRVITLEFEKFYMVTVYTPNSQRELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F Y++ +L +I GDLNV + IDL NP N AG++ EER
Sbjct: 115 RLEYRMKWEDDFLHYLR-DLEQLKPVIFCGDLNVAHKEIDLKNPKANKNNAGFSAEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
++D G D FR+ YP++ AYT+WS+ +AR NN GWR+DY VS +L + +KD +
Sbjct: 174 LTRVMDQGFTDTFRYFYPEQTEAYTWWSYM-FNARANNAGWRIDYFCVSAELKDQLKDAV 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +DV GS HCP+ L +
Sbjct: 233 IYNDVLGSDHCPIGLEI 249
>gi|423635487|ref|ZP_17611140.1| exodeoxyribonuclease [Bacillus cereus VD156]
gi|401278238|gb|EJR84174.1| exodeoxyribonuclease [Bacillus cereus VD156]
Length = 252
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 160/258 (62%), Gaps = 8/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ E + DI LQ+I+ QE ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQEGQID----LNLEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + +K++PL+V YG+ +Q GR+IT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGLDIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLER 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EER F
Sbjct: 117 LDYRMKWEDDFRSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L+ G +D +R+LYPD+E AY++WS+R AR N GWRLDY +VSE++ + I + I
Sbjct: 176 SCILEEGFIDTYRYLYPDQEDAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDQITEAKI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
S+V GS HCPV L ++
Sbjct: 235 NSEVMGSDHCPVELHINF 252
>gi|251779069|ref|ZP_04821989.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083384|gb|EES49274.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 251
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 160/254 (62%), Gaps = 11/254 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRACVKK ++ + E N DI +Q+ + QE ++ +L Y+ +W
Sbjct: 3 KLISWNVNGLRACVKK-GFLDILKESNADIFCVQESKLQEGQID----LNLDGYYDYWNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + +KEKPL + GI G+ ++ GRV+T +F+ F + VY PNS KL
Sbjct: 58 AEKKGYSGTAVFSKEKPLNISLGI-GIEEHDKEGRVLTLEFEEFYLVNVYTPNSQQKLAR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
ID+RM W+ F Y+ +EL + ++I+ GDLNV + IDL NP N AG++ EER F
Sbjct: 117 IDYRMAWENDFRHYL-NELNKDKSVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL +G +D +R+ YP +EGAY++WS+R +AR NN GWR+DY LVS+ + + D I
Sbjct: 176 GELLKSGFIDTYRYFYPGKEGAYSWWSYR-FNARANNAGWRIDYFLVSKDFEDRLVDANI 234
Query: 310 RSDVQGSTHCPVVL 323
+ ++GS HCPV L
Sbjct: 235 HTQIEGSDHCPVEL 248
>gi|317056539|ref|YP_004105006.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
gi|315448808|gb|ADU22372.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
Length = 250
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 155/256 (60%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNG RAC++K ++ + DI +Q+ + Q D+ S L ++H
Sbjct: 1 MKFISWNVNGFRACLQK-GFGDFFTAADADIFCIQETKMQPDQADFSPEGYLKYFHS--- 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAID 191
KG G + TK++PL VK+G+ G GRVIT +F+ + F+ YVPN+ +LK ID
Sbjct: 57 AVKKGYSGTAVYTKKEPLEVKFGLNGTHTDEGRVITCEFEDYYFVCCYVPNAQNELKRID 116
Query: 192 FRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRE 251
+RM ++ Y+ S+L ++ GDLNV + IDL NP N AG++ EER F E
Sbjct: 117 YRMEFEDDMRAYL-SQLDKTKPVVYCGDLNVAHEEIDLKNPKSNAGNAGFSDEERGKFTE 175
Query: 252 LLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRS 311
LL G D FR LYPD+ GAY++WS+R +AR NN GWR+DY +VSE+L + +KD I S
Sbjct: 176 LLGAGFADTFRRLYPDKAGAYSWWSYRF-NARKNNAGWRIDYFVVSERLMDKVKDSKILS 234
Query: 312 DVQGSTHCPVVLRLSL 327
D+ GS HCPV L + L
Sbjct: 235 DITGSDHCPVELDIEL 250
>gi|30021833|ref|NP_833464.1| exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|229129016|ref|ZP_04257989.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
gi|29897389|gb|AAP10665.1| Exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|228654253|gb|EEL10118.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
Length = 252
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 162/259 (62%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ E + DI LQ+I+ QE ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQEGQID----LNLEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K++PL+V YG+ G+ +Q GR+IT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGL-GIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI+ L +I GDLNV + IDL NP N + G++ EER
Sbjct: 116 RLDYRMKWEDDFRSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRENPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L+ G +D +R+LYP++EGAY++WS+R AR N GWRLDY +VSE + + I +
Sbjct: 175 FSCILEEGFIDTYRYLYPNQEGAYSWWSYR-MGARAKNIGWRLDYFVVSEGMKDQITEAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S+V GS HCPV L ++
Sbjct: 234 INSEVMGSDHCPVELHINF 252
>gi|406882429|gb|EKD30227.1| hypothetical protein ACD_78C00115G0011 [uncultured bacterium (gcode
4)]
Length = 254
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 162/253 (64%), Gaps = 7/253 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNG+R+ + K +EY+ +E+PD++ LQ+++ E++ P Y ++W
Sbjct: 1 MKFVSWNVNGVRSVLTK-GFLEYLEKESPDVIGLQEVKATEEQFPAGLDLQSLGYQVYWN 59
Query: 132 GSD-KGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++ KG G + +K KPL+V+YG G++ + GR+IT +F+ + F+TVY PN+ +L+
Sbjct: 60 AAERKGYSGTAVFSKIKPLSVRYGY-GMAEHDTEGRIITLEFEEYFFVTVYTPNAKRELE 118
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++R +WD F+DY++ L + +I+SGDLNV + IDL+NP N +AG+T EER
Sbjct: 119 RLEYRQLWDSLFFDYLK-RLEAEKPVIVSGDLNVAHKDIDLSNPKANRGSAGFTDEERDG 177
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F + L G +D FRH YP++ YT+WS AR N GWRLDY L+SE L +K
Sbjct: 178 FGKFLSDGFIDTFRHFYPNKTEEYTWWS-NFFHARDRNIGWRLDYFLISEWLRERLKSAF 236
Query: 309 IRSDVQGSTHCPV 321
IR +++GS HCPV
Sbjct: 237 IRQEIRGSDHCPV 249
>gi|331092367|ref|ZP_08341193.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
gi|330401391|gb|EGG80977.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
Length = 250
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 158/257 (61%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACV+K +++ + + DI +Q+ + QE ++ + L YH +W
Sbjct: 1 MKLISWNVNGIRACVQK-GFLDFFHQADADIFCIQESKMQEGQL----QLELEGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKE+PL+V YG+ G+ ++ GR+IT +F F F TVY PNS +L
Sbjct: 56 YAEKKGYSGTAVFTKEEPLSVTYGM-GIEEHDKEGRLITLEFPEFYFATVYTPNSQNELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ +L +I GDLNV + IDL NP N K AG+T EER
Sbjct: 115 RLDYRMQWETDFLAYMK-KLEEKKPVIFCGDLNVAHREIDLKNPKTNRKNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD G +D FR+ YPD EG Y++WS+R + AR N GWR+DY VSE L + D
Sbjct: 174 FGELLDAGFIDTFRYFYPDMEGIYSWWSYRFR-AREKNAGWRIDYFCVSESLRERLADAK 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I + + GS HCPV L L
Sbjct: 233 ILTYIFGSDHCPVELDL 249
>gi|229191862|ref|ZP_04318833.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
gi|228591624|gb|EEK49472.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
Length = 252
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 159/258 (61%), Gaps = 8/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ E + DI LQ+I+ QE ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQEGQID----LNLEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + +K++PL+V YG+ +Q GR+IT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGLDIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLER 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EER F
Sbjct: 117 LDYRMKWEDDFRSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L+ G D +R+LYPD+E AY++WS+R AR N GWRLDY +VSE++ + I + I
Sbjct: 176 SCILEEGFTDTYRYLYPDQESAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDQITEAKI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
S+V GS HCPV L ++
Sbjct: 235 NSEVMGSDHCPVELHINF 252
>gi|227509865|ref|ZP_03939914.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190789|gb|EEI70856.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 252
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 158/254 (62%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKK+ E + + D +Q+ + QE ++ + L Y ++
Sbjct: 1 MKFISWNVNGLRAVVKKD-FAETFQKLDADFFCIQETKMQEGQL----KLDLPGYRQYFN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K++PLTV YGI + GR IT ++ F +T YVPNSG KLK
Sbjct: 56 YAERKGYSGTAIFAKDEPLTVSYGIQAPEFDHEGRAITLEYPNFYLVTSYVPNSGAKLKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+DFRM WD+ F+ Y+ ++L S+ +I+ GDLNV IDL NP N AG+T EER++F
Sbjct: 116 LDFRMGWDKAFHAYL-NQLDSHKPVILCGDLNVAHHEIDLKNPKSNHHNAGFTDEERQSF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LLD G +D FRH YPD+E Y++WS+R S R N GWR+DY + S++LA++I D I
Sbjct: 175 TKLLDQGFMDTFRHFYPDKEDIYSWWSYRFHS-RDRNAGWRIDYFVTSKRLADHISDSKI 233
Query: 310 RSDVQGSTHCPVVL 323
+D+ GS HCPV L
Sbjct: 234 LTDIFGSDHCPVEL 247
>gi|116493341|ref|YP_805076.1| exonuclease III [Pediococcus pentosaceus ATCC 25745]
gi|116103491|gb|ABJ68634.1| Exonuclease III [Pediococcus pentosaceus ATCC 25745]
Length = 251
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 160/259 (61%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VK + ++ E + DI +Q+ + QE ++ L HY+ +W
Sbjct: 1 MKLISWNVNGLRAAVK-HGFLDVFKELDADIFCIQETKLQEGQI----ELELPHYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK+KPL V+YG+ G+ +Q GR+IT +F++F IT Y PNS KLK
Sbjct: 56 YAEKKGYSGTAIFTKKKPLAVRYGL-GIEEHDQEGRIITLEFEKFYVITCYTPNSQPKLK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM WD F YI +L + +I GDLNV Q IDL N N K AG+T EER
Sbjct: 115 RLEYRMAWDDAFRAYI-DQLNQHKPVIFCGDLNVAHQEIDLKNDKTNHKNAGFTDEERNK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL++G D +R+ YP +EG Y++WS+R +AR NN GWR+DY + S+ L + D
Sbjct: 174 FTQLLNSGFTDTYRYFYPSKEGVYSWWSYRF-NARANNAGWRIDYFVSSKALDQKLTDAQ 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCPV L L +
Sbjct: 233 IHTEIFGSDHCPVELDLDI 251
>gi|350565008|ref|ZP_08933806.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
gi|348664197|gb|EGY80712.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
Length = 250
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/256 (46%), Positives = 160/256 (62%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRA VKK +E + E NPDI+ LQ+I+ E ++ +Y+
Sbjct: 1 MKFISWNVNGLRAAVKK-GFLEKLAEMNPDIIGLQEIKLSEGQLELELEGYELYYNY--- 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KP++V YGI G+ + GRVIT +F+ + FIT Y PNS KL+
Sbjct: 57 AERKGYSGTAVFTKLKPISVTYGI-GIEEHDTEGRVITLEFEDYYFITCYTPNSKRKLER 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R++W+ F +Y+ +EL N I++ GDLNV IDLANPD N K+AG++ EER F
Sbjct: 116 LDYRVVWEDAFRNYL-NELDKNKPIVLCGDLNVAHNEIDLANPDTNHKSAGFSDEERAKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL +G VD FRH YPD Y++WS NK AR N GWR+DY +VSE+ + I+D I
Sbjct: 175 TELLASGYVDTFRHFYPDRADEYSWWSNFNK-ARERNIGWRIDYFVVSERFLDRIEDSKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
V GS HCPV + L
Sbjct: 234 HQSVMGSDHCPVEIIL 249
>gi|295110263|emb|CBL24216.1| exodeoxyribonuclease III [Ruminococcus obeum A2-162]
Length = 253
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 163/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RAC+ K + E N D+ LQ+ +CQ+ +V L YH +W
Sbjct: 1 MKLISWNVNGIRACITK-GFEDRFKELNADVFCLQETKCQQGQV----ELELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ +G G + TK++PL+V GI G+ ++ GRVIT +F+ F F+TVY PNS +L+
Sbjct: 56 YANRRGYSGTAVFTKKEPLSVVNGI-GIEAHDKEGRVITLEFEEFYFVTVYTPNSQSELR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W++ F Y+ +L+ +I GD+NV Q IDL NP N K AG+T EER
Sbjct: 115 RLEYRMEWERDFLAYLL-KLQEKKPVICCGDMNVAHQEIDLKNPKTNRKNAGFTDEERAC 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L++G VD FR+ YPD+EG Y++WS+R K AR N GWR+DY +VS L + ++D
Sbjct: 174 FSRMLESGFVDTFRYFYPDKEGIYSWWSYRFK-AREKNAGWRIDYFIVSPSLKDRLQDAS 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCPV L +
Sbjct: 233 IHTEIMGSDHCPVELDIDF 251
>gi|227522924|ref|ZP_03952973.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
gi|227089953|gb|EEI25265.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
Length = 252
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 158/254 (62%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKK+ E + + D +Q+ + QE ++ + L Y ++
Sbjct: 1 MKFISWNVNGLRAVVKKD-FAEIFQKLDADFFCIQETKMQEGQL----KLDLPGYRQYFN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K++PLTV YGI + GR IT ++ F +T YVPNSG KLK
Sbjct: 56 YAERKGYSGTAIFAKDEPLTVSYGIQAPEFDHEGRAITLEYPNFYLVTSYVPNSGAKLKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+DFRM WD+ F+ Y+ ++L S+ +I+ GDLNV IDL NP N AG+T EER++F
Sbjct: 116 LDFRMGWDKAFHAYL-NQLDSHKPVILCGDLNVAHHEIDLKNPQSNHHNAGFTDEERQSF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LLD G +D FRH YPD+E Y++WS+R S R N GWR+DY + S++LA++I D I
Sbjct: 175 TKLLDQGFMDTFRHFYPDKEDIYSWWSYRFHS-RDRNAGWRIDYFVTSKRLADHISDSKI 233
Query: 310 RSDVQGSTHCPVVL 323
+D+ GS HCPV L
Sbjct: 234 LTDIFGSDHCPVEL 247
>gi|423522432|ref|ZP_17498905.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
gi|401175126|gb|EJQ82329.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
Length = 252
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 159/262 (60%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA + K +EY+ E N DI LQ+I+ Q ++ PE Y+
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------YYT 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS
Sbjct: 54 YWNYAVKKGYSGTAIFTKKEPLSVTYGL-GIEEHDQEGRVITLEFEDFYMITLYTPNSKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ +D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EE
Sbjct: 113 GLERLDYRMEWEDDFRAYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F L+ G VD +R+LYP++EGAY++WS+ AR N GWRLDY +VSE++ I
Sbjct: 172 REKFTLALEGGFVDTYRYLYPNQEGAYSWWSYL-MGARAKNIGWRLDYFVVSERIKGQII 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I S+V GS HCPV L ++
Sbjct: 231 DAKINSEVMGSDHCPVELHINF 252
>gi|326790354|ref|YP_004308175.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
gi|326541118|gb|ADZ82977.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
Length = 251
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 161/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RA + K ++Y + D+ +Q+ +CQE +V L Y+ +W
Sbjct: 1 MKCVSWNVNGVRAVLTK-GFLDYFKAVDADVFCIQETKCQEGQV----EIELPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G L +K++PL+V YG+ G++ + GRVITA+F+ +TVY PN+ +L
Sbjct: 56 YAQKKGYSGTALFSKKEPLSVSYGL-GIAEHDTEGRVITAEFEEAYVVTVYTPNAQNELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
ID+RM W+ F Y++ +L N +II GDLNV Q IDL NP N AG++ EER
Sbjct: 115 RIDYRMAWEDAFKAYLK-KLEENKPVIICGDLNVAHQEIDLKNPKTNRGNAGFSDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G +D FR+ YPD EGAY++WS+R K AR N GWR+DY L SE L + +
Sbjct: 174 FGELLEAGFIDTFRYFYPDLEGAYSWWSYRFK-AREKNTGWRIDYFLASEVLKDKLVGAA 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCPV+L +++
Sbjct: 233 IDAEILGSDHCPVILEINI 251
>gi|374583527|ref|ZP_09656621.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
gi|374419609|gb|EHQ92044.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
Length = 262
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 161/256 (62%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACVK N +++ L+E+ DI LQ+ + Q++++P +L Y+ +W
Sbjct: 1 MKLISWNVNGIRACVK-NGFMDFFLKEDADIFCLQETKIQKEQIP----FTLDGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + +K +PL + YG+ + + GR+IT +F++F +TVY PNS L
Sbjct: 56 FAQKKGYSGTAIFSKIEPLNIVYGMGKEEHDKEGRLITLEFEKFYVVTVYAPNSQRGLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F +YI L +I+ GDLNV + +DL NP N K AG+T EER F
Sbjct: 116 LDYRMKWEDDFLNYIIG-LEKCKPVIVCGDLNVAHKEMDLKNPSTNKKNAGFTPEERSKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
E+++ G VD FR YPD+ AYT+WS+ +AR NN GWR+DY VS +L + +++ +I
Sbjct: 175 DEVINKGFVDTFRFFYPDKTQAYTWWSYM-FNARANNAGWRIDYFCVSAELKSQLRNAVI 233
Query: 310 RSDVQGSTHCPVVLRL 325
DV GS HCPV L +
Sbjct: 234 YQDVLGSDHCPVGLEI 249
>gi|228922454|ref|ZP_04085756.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|423581952|ref|ZP_17558063.1| exodeoxyribonuclease [Bacillus cereus VD014]
gi|228837168|gb|EEM82507.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|401212831|gb|EJR19572.1| exodeoxyribonuclease [Bacillus cereus VD014]
Length = 252
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 160/258 (62%), Gaps = 8/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EY+ E + DI LQ+I+ QE ++ +L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQEGQID----LNLEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + +K++PL+V YG+ +Q GR+IT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGLDIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLER 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F YI+ L +I GDLNV + IDL NP N K G++ EER F
Sbjct: 117 LDYRMKWEDDFRSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L+ G +D +R+LYPD+E AY++WS+R AR N GWRLDY +VSE++ + I + I
Sbjct: 176 SCILEEGFIDTYRYLYPDQEDAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDQITEAKI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
++V GS HCPV L ++
Sbjct: 235 NTEVMGSDHCPVELHINF 252
>gi|429507371|ref|YP_007188555.1| ExoA protein [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429488961|gb|AFZ92885.1| ExoA [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 252
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 159/259 (61%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KK Y+ E DI+ LQ+ + Q+ +V L YH +W
Sbjct: 1 MKLISWNVNGLRAVMKKIDINTYVQETEADILCLQETKVQDGQVS----LQLEGYHAYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSN--QRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +KEKPL V YG+ G+ + Q GRVIT +F+ + Y PN+ L+
Sbjct: 57 YAVKKGYSGTAVFSKEKPLHVFYGL-GIDDHDQEGRVITLEFEHVFVVNCYTPNAKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
ID+R+ W+ F DY+Q +L +I+ GDLNV + IDL NP N K AG++ +ER
Sbjct: 116 RIDYRLQWEADFKDYLQ-KLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSEQEREA 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL+ G D+FR+LYPD+EGAY++WS+R +AR N GWRLDY +VS++L I
Sbjct: 175 FSALLNAGFTDSFRYLYPDQEGAYSWWSYRT-NAREKNIGWRLDYVIVSDRLKQRISQAA 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L L
Sbjct: 234 ICADIMGSDHCPVEMTLDL 252
>gi|46908012|ref|YP_014401.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094151|ref|ZP_00231871.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217964070|ref|YP_002349748.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|226224385|ref|YP_002758492.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254826392|ref|ZP_05231393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|254933631|ref|ZP_05266990.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|255521086|ref|ZP_05388323.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-175]
gi|300766428|ref|ZP_07076383.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|386008552|ref|YP_005926830.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|386027157|ref|YP_005947933.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|386732521|ref|YP_006206017.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281392|ref|YP_006682290.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404287210|ref|YP_006693796.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405750132|ref|YP_006673598.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|405753007|ref|YP_006676472.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|405755941|ref|YP_006679405.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|406704564|ref|YP_006754918.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|417315430|ref|ZP_12102109.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|422809864|ref|ZP_16858275.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|424714659|ref|YP_007015374.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823542|ref|ZP_18248555.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|46881282|gb|AAT04578.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017476|gb|EAL08289.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217333340|gb|ACK39134.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|225876847|emb|CAS05556.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293585194|gb|EFF97226.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|293595632|gb|EFG03393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|300512852|gb|EFK39944.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|307571362|emb|CAR84541.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|328466425|gb|EGF37573.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|332312222|gb|EGJ25317.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|336023738|gb|AEH92875.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|378752065|gb|EHY62652.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|384391279|gb|AFH80349.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219332|emb|CBY70696.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|404222207|emb|CBY73570.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|404225141|emb|CBY76503.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|404228027|emb|CBY49432.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404246139|emb|CBY04364.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361594|emb|CBY67867.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|424013843|emb|CCO64383.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
Length = 251
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 161/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VKK +EY E + DI LQ+ + QE ++ L Y +W
Sbjct: 1 MKLISWNVNGLRAAVKK-GFLEYFEEVDADIFCLQETKLQEGQI----ELDLPAYKDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL+V+YG+ GV + GRVIT +F+ F +TVY PNS +LK
Sbjct: 56 YAVKKGYSGTAIFTKVEPLSVQYGL-GVPEHDTEGRVITLEFEEFFMVTVYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM ++ +Y+++ L +++ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTFEDAILEYVKN-LDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LD G +D+FR+ YPD AY++WS+R +AR N GWR+DY +VSE+L + + D
Sbjct: 174 FSAFLDAGFIDSFRYFYPDLTDAYSWWSYR-MNARARNTGWRIDYFVVSERLKDKLVDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +DV GS HCPV L L+L
Sbjct: 233 IHADVLGSDHCPVELELNL 251
>gi|153853826|ref|ZP_01995182.1| hypothetical protein DORLON_01173 [Dorea longicatena DSM 13814]
gi|149753576|gb|EDM63507.1| exodeoxyribonuclease III [Dorea longicatena DSM 13814]
Length = 250
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/255 (43%), Positives = 155/255 (60%), Gaps = 11/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RAC +K ++ E + DI +Q+ + Q ++ YH +W
Sbjct: 1 MKFISWNVNGIRACAQK-GFMDIFNEADADIFCIQESKMQAGQL----ELDTPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKE+PL+V YG+ G+ ++ GRVIT +F+ F FITVY PNS +L
Sbjct: 56 YAERKGYSGTAIFTKEEPLSVSYGL-GIEEHDKEGRVITLEFEDFYFITVYTPNSQSELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ +L +I GDLNV + IDL NP N K AG+T EER
Sbjct: 115 RLDYRMRWEDAFLAYLK-KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL+ G +D FR+ YPD EG Y++WS+R SAR N GWR+DY VSE L + IKD
Sbjct: 174 FTNLLNAGFIDTFRYFYPDAEGIYSWWSYRF-SARKKNAGWRIDYFCVSESLKDRIKDAK 232
Query: 309 IRSDVQGSTHCPVVL 323
I +++ GS HCPV L
Sbjct: 233 ILTEIMGSDHCPVEL 247
>gi|290893090|ref|ZP_06556079.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404408223|ref|YP_006690938.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
gi|290557450|gb|EFD90975.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404242372|emb|CBY63772.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
Length = 251
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 161/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VKK +EY E + DI LQ+ + QE ++ L Y +W
Sbjct: 1 MKLISWNVNGLRAAVKK-GFLEYFEEVDSDIFCLQETKLQEGQI----ELDLPAYKDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL+V+YG+ GV + GRVIT +F+ F +TVY PNS +LK
Sbjct: 56 YAVKKGYSGTAIFTKVEPLSVQYGL-GVPEHDTEGRVITLEFEEFFMVTVYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM ++ +Y+++ L +++ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTFEDAILEYVKN-LDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LD G +D+FR+ YPD AY++WS+R +AR N GWR+DY +VSE+L + + D
Sbjct: 174 FSAFLDAGFIDSFRYFYPDLTDAYSWWSYR-MNARARNTGWRIDYFVVSERLKDKLVDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +DV GS HCPV L L+L
Sbjct: 233 IHADVLGSDHCPVELELNL 251
>gi|15893514|ref|NP_346863.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|337735433|ref|YP_004634880.1| exodeoxyribonuclease ExoA [Clostridium acetobutylicum DSM 1731]
gi|384456943|ref|YP_005669363.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|15023055|gb|AAK78203.1|AE007535_5 Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|325507632|gb|ADZ19268.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|336292303|gb|AEI33437.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum DSM 1731]
Length = 250
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 156/254 (61%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K ++Y E + D+ LQ+ + QE +V L Y+ FW
Sbjct: 1 MKLISWNVNGLRACITK-GFLDYFKEVDADVFCLQETKIQEGQV----ELELPGYYDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGI-PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK+KP++ YGI ++ GRVIT +F+ F +TVY PNS KL
Sbjct: 56 YAEKKGYSGTAIFTKKKPISYSYGINEEKHDKEGRVITLEFEDFYMVTVYTPNSKEKLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F +Y+++ L +I+ GD+NV IDL NP N K AG++ EER F
Sbjct: 116 LEYRMEWEDSFRNYLKA-LDEKKPVIVCGDMNVAHTEIDLKNPKTNTKNAGFSPEERSKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D +R+ YPD+EG Y++WS+R K AR N GWR+DY SE+L + + I
Sbjct: 175 TELLEAGFIDTYRYFYPDKEGIYSWWSYRFK-AREKNAGWRIDYFCTSERLKDKLVSADI 233
Query: 310 RSDVQGSTHCPVVL 323
++V GS HCPV L
Sbjct: 234 HTEVMGSDHCPVEL 247
>gi|16803822|ref|NP_465307.1| hypothetical protein lmo1782 [Listeria monocytogenes EGD-e]
gi|16411236|emb|CAC99860.1| lmo1782 [Listeria monocytogenes EGD-e]
Length = 251
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 162/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VKK +EY E + DI LQ+ + QE ++ L Y +W
Sbjct: 1 MKLISWNVNGLRAAVKK-GFLEYFEEVDADIFCLQETKLQEGQI----ELDLPAYKDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL+V+YG+ G+ + GRVIT +F+ F +TVY PNS +LK
Sbjct: 56 YAVKKGYSGTAIFTKVEPLSVQYGL-GIPEHDTEGRVITLEFEEFFMVTVYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM ++ +Y+++ L + +++ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTFEDAILEYVKN-LDNTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LD G +D+FR+ YPD AY++WS+R +AR N GWR+DY +VSE+L + + D
Sbjct: 174 FSAFLDAGFIDSFRYFYPDLTDAYSWWSYR-MNARARNTGWRIDYFVVSERLKDKLVDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +DV GS HCPV L L+L
Sbjct: 233 IHADVLGSDHCPVELELNL 251
>gi|339521855|gb|AEJ84092.1| DNA-(apurinic or apyrimidinic site) lyase [Capra hircus]
Length = 318
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 115/275 (41%), Positives = 167/275 (60%), Gaps = 7/275 (2%)
Query: 57 DISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVP 116
D + ++ S + +K+ WNV+G RA +KK V++I EE PDI+ LQ+ +C E+++P
Sbjct: 47 DPADQKTSPSGKSATLKICPWNVDGRRAWIKKKG-VDWIKEEAPDILCLQETKCSENKLP 105
Query: 117 ESFRKSLSHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRF 173
++ H +W SDK G GVGLL+++ PL V YGI +Q GRVI A + F
Sbjct: 106 VELQELSGLPHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAGYDAF 165
Query: 174 TFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPD 233
+T YVPN+G L +++R WD+ F +++ L S +++ GDLNV + D+ NP
Sbjct: 166 VLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEESDVRNPK 224
Query: 234 KNVKTAGYTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLD 292
N K AG+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLD
Sbjct: 225 GNKKNAGFTPQERQGFGELLQAVPLTDSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLD 283
Query: 293 YHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
Y L+S+ L + D IRS GS HCP+ L L+L
Sbjct: 284 YFLLSQSLLPAVCDSKIRSKALGSDHCPITLYLAL 318
>gi|324515683|gb|ADY46281.1| Recombination repair protein 1 [Ascaris suum]
Length = 378
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 130/314 (41%), Positives = 187/314 (59%), Gaps = 32/314 (10%)
Query: 34 KRSADVIQKSDDENQIP--KKQ--VKFDISHE---------EGSRKPYTTKVKVSTWNVN 80
KR V +K+ + ++P KKQ +K D +E + + +P T + TWNV
Sbjct: 77 KRRGHVEKKASPKKKVPRIKKQSSMKVDEQNETEVEESVVDDSANRPLT----IITWNVA 132
Query: 81 GLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDKGQ--- 137
GLRA VKK+AC +I + DI+ LQ+ +C E VP F + + F +G + G+
Sbjct: 133 GLRALVKKDAC-RFITSDKADIVLLQETKCAE--VPTGF--PVKGFKAF-VGENPGKTGH 186
Query: 138 GGVGLLTKEKPLTVKYGIPGVSNQ---RGRVITAKFKRFTFITVYVPNSGIKLKAIDFRM 194
GV LL+K+KP+ V+ + V + GR+I A++ +F I YVPNSG L + R
Sbjct: 187 AGVILLSKQKPIKVQTKLENVPEELGVEGRLIVAEYDKFYLINAYVPNSGRGLVNLAKRK 246
Query: 195 IWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEERRNFRELL 253
IWD F DYI+ +L ++ +I +GDLNV + IDLANP N KTAG+T +ER +F LL
Sbjct: 247 IWDDFFIDYIK-QLDASKAVIYAGDLNVAHEEIDLANPKTNRNKTAGFTDQERGDFTRLL 305
Query: 254 DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDV 313
G VD +R L+PD+ GAYT+WS + +AR N GWRLDY +VSE+L + + C I S V
Sbjct: 306 QAGFVDVYRSLHPDKTGAYTFWSTMH-NARATNIGWRLDYFVVSERLMDKVVKCEINSRV 364
Query: 314 QGSTHCPVVLRLSL 327
GS HCP+ L+++L
Sbjct: 365 MGSDHCPLTLQINL 378
>gi|296090736|ref|NP_001171688.1| DNA-(apurinic or apyrimidinic site) lyase [Gallus gallus]
gi|194722849|dbj|BAG66138.1| APEX nuclease [Gallus gallus]
Length = 300
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 172/305 (56%), Gaps = 13/305 (4%)
Query: 28 RKKKKMKRSADVIQ-KSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACV 86
R KK A+V+ KS E P V + E +PY KV++WNV+GLRA V
Sbjct: 4 RSKKGEDGEAEVVSAKSPREAAAP--YVDPPVREETADGRPYN--FKVTSWNVDGLRAWV 59
Query: 87 KKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGS--DKGQGGVGLLT 144
+K ++++ E PD++ LQ+ +C + +P + H FW + G GVGLL+
Sbjct: 60 RKGG-LQWLQSEAPDVVCLQETKCGAESIPSELSQLPHLPHKFWGSAVGRSGYSGVGLLS 118
Query: 145 KEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYD 202
+ P+ V +GI G+ + GRV+TA+F ++ YVPNSG L + +R WD F
Sbjct: 119 RTAPIRVTHGI-GIEEHDAEGRVLTAEFPSVYVVSAYVPNSGRGLNRLQYRQRWDGAFKS 177
Query: 203 YIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFR 262
++Q L + +++ GDLNV + IDL NP N ++ G+T EER F LLD G +D+FR
Sbjct: 178 FLQ-RLDAQKPVVLCGDLNVAHREIDLRNPKSNRRSPGFTQEERDAFGALLDGGFLDSFR 236
Query: 263 HLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVV 322
LYPD AYT+W++ AR N GWRLDY L+S +L + D IRS GS HCP+
Sbjct: 237 LLYPDVPNAYTFWTYMG-GARERNVGWRLDYFLLSTRLREALCDSKIRSAAMGSDHCPIT 295
Query: 323 LRLSL 327
L L+L
Sbjct: 296 LYLAL 300
>gi|16800960|ref|NP_471228.1| hypothetical protein lin1894 [Listeria innocua Clip11262]
gi|422416297|ref|ZP_16493254.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
gi|16414395|emb|CAC97124.1| lin1894 [Listeria innocua Clip11262]
gi|313623313|gb|EFR93545.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
Length = 251
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 161/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VKK +EY E + DI LQ+ + QE ++ L Y +W
Sbjct: 1 MKLISWNVNGLRAAVKK-GFLEYFEEVDADIFCLQETKLQEGQI----ELDLPAYKDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL+V+YG+ GV + GRVIT +F+ F +TVY PNS +LK
Sbjct: 56 YAVKKGYSGTAIFTKVEPLSVQYGL-GVPEHDTEGRVITLEFEDFYMVTVYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM ++ +Y+++ L +++ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTFEDAILEYVKN-LDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LD G +D+FR+ YPD AY++WS+R +AR N GWR+DY +VSE+L + + D
Sbjct: 174 FSAFLDAGFIDSFRYFYPDLTDAYSWWSYR-MNARARNTGWRIDYFVVSERLKDKLVDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +DV GS HCPV L L+L
Sbjct: 233 IHADVLGSDHCPVELELNL 251
>gi|254854529|ref|ZP_05243877.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
gi|258607929|gb|EEW20537.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
Length = 251
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 160/259 (61%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VKK +EY E + DI LQ+ + QE ++ L Y +W
Sbjct: 1 MKLISWNVNGLRAAVKK-GFLEYFEEVDADIFCLQETKLQEGQI----ELDLPAYKDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL+V+YG GV + GRVIT +F+ F +TVY PNS +LK
Sbjct: 56 YAVKKGYSGTAIFTKVEPLSVQYGF-GVPEHDTEGRVITLEFEEFFMVTVYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM ++ +Y+++ L +++ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTFEDAILEYVKN-LDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LD G +D+FR+ YPD AY++WS+R +AR N GWR+DY +VSE+L + + D
Sbjct: 174 FSAFLDAGFIDSFRYFYPDLTDAYSWWSYR-MNARARNTGWRIDYFVVSERLKDKLVDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +DV GS HCPV L L+L
Sbjct: 233 IHADVLGSDHCPVELELNL 251
>gi|227512799|ref|ZP_03942848.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227083999|gb|EEI19311.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
Length = 252
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 158/254 (62%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKK+ E + + D +Q+ + QE ++ + L Y ++
Sbjct: 1 MKFISWNVNGLRAVVKKD-FAEIFQKLDADFFCIQETKMQEGQL----KLDLPGYRQYFN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K++PLTV YGI + GR IT ++ F +T YVPNSG KLK
Sbjct: 56 YAERKGYSGTAIFAKDEPLTVSYGIQAPEFDHEGRAITLEYPNFYLVTSYVPNSGAKLKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+DFRM WD+ F+ Y+ ++L S+ +I+ GDLNV IDL NP N AG+T EER++F
Sbjct: 116 LDFRMGWDKAFHAYL-NQLDSHKPVILCGDLNVAHYEIDLKNPQSNHHNAGFTDEERQSF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LLD G +D FRH YPD+E Y++WS+R S R N GWR+DY + S++LA++I D I
Sbjct: 175 TKLLDQGFMDTFRHFYPDKEDIYSWWSYRFHS-RDRNAGWRIDYFVTSKRLADHISDSKI 233
Query: 310 RSDVQGSTHCPVVL 323
+D+ GS HCPV L
Sbjct: 234 LTDIFGSDHCPVEL 247
>gi|365903535|ref|ZP_09441358.1| exodeoxyribonuclease III Xth [Lactobacillus malefermentans KCTC
3548]
Length = 254
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 114/255 (44%), Positives = 157/255 (61%), Gaps = 11/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKK+ E+ + D +Q+ + QE+++ L +YH ++
Sbjct: 1 MKFISWNVNGLRAVVKKDFEAEF-EALDADFFCIQETKMQENQL----SLDLPNYHQYYN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGI--PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G G+ TK +PL+V YGI P + ++ GR IT ++K F +T Y PNSG +LK
Sbjct: 56 YAEQKGYSGTGIFTKHEPLSVHYGINVPELDHE-GRTITLEYKSFFLVTCYTPNSGHELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+DFRM WD F Y+ +L +II GDLNV IDL +P N AG+T EER N
Sbjct: 115 RLDFRMQWDPAFQSYLL-KLNKRKPVIICGDLNVAHSEIDLKSPTSNHHNAGFTDEEREN 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LLD+G +D +R+ YPD++ Y++WS+R K AR N GWR+DY L S+ LA I D
Sbjct: 174 FTTLLDSGFIDTYRYFYPDKKEKYSWWSYRTK-AREVNSGWRIDYFLASKSLAPRISDAN 232
Query: 309 IRSDVQGSTHCPVVL 323
I ++V GS HCPVVL
Sbjct: 233 ILTNVMGSDHCPVVL 247
>gi|110801105|ref|YP_695823.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
gi|110675752|gb|ABG84739.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
Length = 250
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 156/254 (61%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACVKK ++Y E+ DI LQ+ + QE ++ L Y +W
Sbjct: 1 MKLISWNVNGLRACVKK-GFLDYFKSEDADIFCLQETKLQEGQID----LDLEGYFQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL V YGI + + GRVIT +F+ +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKKEPLNVYYGINMEHHDKEGRVITLEFEDLFMVTVYTPNSQSELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F +Y+ EL S +++ GDLNV + IDL NP N K AG+T EER F
Sbjct: 116 LEYRMEWEDDFRNYLL-ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL +G +D FR+ PD EG Y++WS+R +AR NN GWR+DY LVS L + IK+ I
Sbjct: 175 STLLSSGFIDTFRYFNPDLEGVYSWWSYR-FNARKNNAGWRIDYFLVSNNLEDRIKEASI 233
Query: 310 RSDVQGSTHCPVVL 323
+++ GS HCPV L
Sbjct: 234 DTEILGSDHCPVKL 247
>gi|253580808|ref|ZP_04858071.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847878|gb|EES75845.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 251
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 166/259 (64%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RAC+ K E + DI LQ+ +CQ+ +V + L Y+ +W
Sbjct: 1 MKLISWNVNGIRACIGKGF-EESFAALDADIFCLQETKCQQGQV----KLELPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ +G G + TK++PL+V YGI G+ ++ GRVIT ++++F +TVY PNS +L+
Sbjct: 56 YANRRGYSGTAVFTKKEPLSVVYGI-GIEKHDKEGRVITLEYEKFYLVTVYTPNSQSELR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W++ F Y+ +L+ + +I GD NV Q IDL NP N K AG+T EER
Sbjct: 115 RLEYRMHWEEDFLAYLL-KLQESKPVICCGDFNVAHQEIDLKNPKTNRKNAGFTDEERAC 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ++L++G +D FR+ YPD EG Y++WS+R K AR N GWR+DY + S QL + +K
Sbjct: 174 FGKVLESGFIDTFRYFYPDVEGRYSWWSYRFK-AREKNAGWRIDYFITSPQLKDKLKGAE 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S++ GS HCPV L+++L
Sbjct: 233 IHSEIMGSDHCPVELQITL 251
>gi|398309083|ref|ZP_10512557.1| exodeoxyribonuclease III [Bacillus mojavensis RO-H-1]
Length = 252
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 163/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA ++K + Y+ +E+ DI+ LQ+ + Q+ +V PE YH+
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKDEDADIVCLQETKIQDGQVDLEPEG-------YHV 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +K+KPL V YGI G+ +Q GRVIT +F+ +TVY PN+
Sbjct: 54 YWNYAEKKGYSGTAVFSKQKPLNVMYGI-GIEEHDQEGRVITLEFENMYVMTVYTPNAKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+R+ W++ +I EL +I+ GDLNV Q IDL NP N AG++ +E
Sbjct: 113 GLERIDYRLQWEEALLAFIL-ELDKKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F L+ G +D+FR+LYPD EGAY++WS+R AR N GWRLDY +VSE+L I+
Sbjct: 172 RGAFTRFLEAGFIDSFRYLYPDLEGAYSWWSYR-AGARDRNIGWRLDYFVVSERLKGQIE 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I + V GS HCPV L +++
Sbjct: 231 DAKISAQVLGSDHCPVELTINI 252
>gi|381184157|ref|ZP_09892815.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380315948|gb|EIA19409.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 251
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 111/258 (43%), Positives = 162/258 (62%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKK ++Y E + DI LQ+ + QE ++ L+ Y+ +W
Sbjct: 1 MKFISWNVNGLRAAVKK-GFMDYFNEADADIFCLQETKLQEGQI----ELDLNGYYDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL V YG+ +Q GRVIT +F++F FITVY PNS +L
Sbjct: 56 YAVKKGYSGTAIFTKKEPLRVFYGLSVAEHDQEGRVITLEFEQFYFITVYTPNSQPELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM +++ F +Y+++ L +I GDLNV + IDL NP N + G++ EER F
Sbjct: 116 LAYRMSFEEAFLNYVKN-LDQEKPVIFCGDLNVAHKEIDLKNPKTNRRNPGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L++G VD FRH YP++EGAY++WS+R +AR N GWR+DY +VS +L + + D I
Sbjct: 175 TTVLESGFVDTFRHFYPEKEGAYSWWSYR-MNARARNTGWRIDYFVVSSRLRDKLIDAKI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
+DV GS HCPV L + L
Sbjct: 234 HADVLGSDHCPVELTIDL 251
>gi|429766260|ref|ZP_19298534.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
gi|429185240|gb|EKY26229.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
Length = 250
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 161/257 (62%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACV+K +++ E N DI +Q+ + QE ++ L YH +W
Sbjct: 1 MKLISWNVNGIRACVQK-GFLDFFNEVNADIFCIQESKLQEGQI----NLELKGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V+YG+ G+ ++ GRVIT +F+ F ITVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKKEPLSVRYGL-GIEEHDKEGRVITLEFEDFFMITVYTPNSQNELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ L + +I+ GDLNV + IDL NP N K AG+T EER
Sbjct: 115 RLDYRMKWEDDFKKYLK-HLEKSKPVIVCGDLNVAHKEIDLKNPTTNRKNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LL+ G +D FR+ YP+ G Y++WS+R +AR NN GWR+DY +VSE L + ++
Sbjct: 174 LTSLLNDGFIDTFRYFYPETTGVYSWWSYRF-NARKNNAGWRIDYFVVSESLKDRLESAK 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I ++V GS HCPV L +
Sbjct: 233 IHTEVLGSDHCPVELTI 249
>gi|423100921|ref|ZP_17088626.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
gi|370792563|gb|EHN60427.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
Length = 256
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 161/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VKK +EY E + DI LQ+ + QE ++ L Y +W
Sbjct: 6 MKLISWNVNGLRAAVKK-GFLEYFEEVDADIFCLQETKLQEGQI----ELDLPAYKDYWN 60
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL+V+YG+ GV + GRVIT +F+ F +TVY PNS +LK
Sbjct: 61 YAVKKGYSGTAIFTKVEPLSVQYGL-GVPEHDTEGRVITLEFEDFYMVTVYTPNSQAELK 119
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM ++ +Y+++ L +++ GDLNV + IDL NP N K AG++ EER
Sbjct: 120 RLDYRMTFEDAILEYVKN-LDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 178
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LD G +D+FR+ YPD AY++WS+R +AR N GWR+DY +VSE+L + + D
Sbjct: 179 FSAFLDAGFIDSFRYFYPDLTDAYSWWSYR-MNARARNTGWRIDYFVVSERLKDKLVDAK 237
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +DV GS HCPV L L+L
Sbjct: 238 IHADVLGSDHCPVELELNL 256
>gi|422413323|ref|ZP_16490282.1| exodeoxyribonuclease III, partial [Listeria innocua FSL S4-378]
gi|313618350|gb|EFR90386.1| exodeoxyribonuclease III [Listeria innocua FSL S4-378]
Length = 253
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/258 (43%), Positives = 160/258 (62%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRA VKK +EY E + DI LQ+ + QE ++ L Y +W
Sbjct: 4 KLISWNVNGLRAAVKK-GFLEYFEEVDADIFCLQETKLQEGQI----ELDLPAYKDYWNY 58
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK +PL+V+YG+ GV + GRVIT +F+ F +TVY PNS +LK
Sbjct: 59 AVKKGYSGTAIFTKVEPLSVQYGL-GVPEHDTEGRVITLEFEDFYMVTVYTPNSQAELKR 117
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM ++ +Y+++ L +++ GDLNV + IDL NP N K AG++ EER F
Sbjct: 118 LDYRMTFEDAILEYVKN-LDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKF 176
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LD G +D+FR+ YPD AY++WS+R +AR N GWR+DY +VSE+L + + D I
Sbjct: 177 SAFLDAGFIDSFRYFYPDLTDAYSWWSYR-MNARARNTGWRIDYFVVSERLKDKLVDAKI 235
Query: 310 RSDVQGSTHCPVVLRLSL 327
+DV GS HCPV L L+L
Sbjct: 236 HADVLGSDHCPVELELNL 253
>gi|47097522|ref|ZP_00235061.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|254914076|ref|ZP_05264088.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|254938390|ref|ZP_05270087.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|386044090|ref|YP_005962895.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|386047434|ref|YP_005965766.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|386050759|ref|YP_005968750.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404284278|ref|YP_006685175.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404411083|ref|YP_006696671.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|405758833|ref|YP_006688109.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
gi|47014105|gb|EAL05099.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|258611002|gb|EEW23610.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|293592096|gb|EFG00431.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|345534425|gb|AEO03866.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|345537324|gb|AEO06764.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|346424605|gb|AEO26130.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404230909|emb|CBY52313.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|404233780|emb|CBY55183.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404236715|emb|CBY58117.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
Length = 251
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 161/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+++ +WNVNGLRA VKK +EY E + DI LQ+ + QE ++ L Y +W
Sbjct: 1 MRLISWNVNGLRAAVKK-GFLEYFEEVDADIFCLQETKLQEGQI----ELDLPAYKDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL+V+YG+ G+ + GRVIT +F+ F +TVY PNS +LK
Sbjct: 56 YAVKKGYSGTAIFTKVEPLSVQYGL-GIPEHDTEGRVITLEFEEFFMVTVYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM ++ +Y+++ L +++ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTFEDAILEYVKN-LDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LD G +D+FR+ YPD AY++WS+R +AR N GWR+DY +VSE+L + + D
Sbjct: 174 FSAFLDAGFIDSFRYFYPDLTDAYSWWSYR-MNARARNTGWRIDYFVVSERLKDKLVDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +DV GS HCPV L L+L
Sbjct: 233 IHADVLGSDHCPVELELNL 251
>gi|89097572|ref|ZP_01170461.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
gi|89087868|gb|EAR66980.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
Length = 251
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 156/258 (60%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACVKK +++ +EEN DI +Q+ + QE ++ +L YH +W
Sbjct: 1 MKLVSWNVNGIRACVKK-GFLDFFMEENADIFCIQESKLQEGQI----ELNLDGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKEKPL V YGI G + GR +T +F+ F + VY PNS L
Sbjct: 56 YAEKKGYSGTAVFTKEKPLYVSYGIAGRETEPEGRSLTLEFENFYLLNVYTPNSKRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +R+ W+ +YI EL +I+ GDLNV IDL N N +G+T EER
Sbjct: 116 LPYRLEWEDEIREYIL-ELEQKKPVILCGDLNVAHLDIDLKNARSNRGNSGFTDEERGKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL G VD+FR+LYP++EGAYT+WS+ K R N GWR+DY +VS++L +I D I
Sbjct: 175 TSLLSEGFVDSFRYLYPEQEGAYTWWSYMAK-VRERNIGWRIDYFIVSDKLKEHILDSKI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
D+ GS HCP++L ++L
Sbjct: 234 YCDIMGSDHCPIMLEMAL 251
>gi|347549181|ref|YP_004855509.1| putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346982252|emb|CBW86246.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 251
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 160/259 (61%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VKK +EY + DI LQ+ + Q ++ L Y +W
Sbjct: 1 MKLISWNVNGLRAAVKK-GFLEYFESVDADIFCLQETKLQAGQID----LDLPEYKDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYG--IPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +P++V+YG IP + GRVIT +F++F ITVY PNS +LK
Sbjct: 56 YAVKKGYSGTAIFTKIEPISVRYGLDIPE-HDTEGRVITLEFEKFFMITVYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM ++ Y++ +L +++ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTFEDAILTYVK-KLDETKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F L+ G VD+FR+ YPD EGAY++WS+R +AR N GWR+DY +VSE+L +N+ D
Sbjct: 174 FTTFLEAGFVDSFRYFYPDLEGAYSWWSYR-MNARAQNTGWRIDYFVVSERLKDNLVDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I DV GS HCPV L L++
Sbjct: 233 IHLDVLGSDHCPVELELNI 251
>gi|293376523|ref|ZP_06622751.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
gi|292644749|gb|EFF62831.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
Length = 251
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 156/256 (60%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRACVKK ++++ E PD + +Q+ + QE ++ L Y+ +W
Sbjct: 1 MKFISWNVNGLRACVKK-GFLDFVEAEQPDFLCVQETKLQEGQID----LQLDGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK +PL V YG+ +Q GRVIT ++ F +TVY PNS +L
Sbjct: 56 YAVKKGYSGTAIFTKHEPLQVTYGLNIAEHDQEGRVITLEYNDFYLVTVYTPNSQNELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ F +Y+ L +I+ GDLNV Q IDL NP N K AG+T+EER
Sbjct: 116 LDYRLTWEEAFRNYLIG-LDVLKPVIVCGDLNVAHQQIDLKNPKTNTKNAGFTIEERNEM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL++G +D FR+ YP +E Y++WS+R AR N GWR+DY + S+ L + ++D I
Sbjct: 175 TKLLNSGFIDTFRYFYPTKENCYSWWSYR-AGARAKNVGWRIDYFITSKALESRLEDARI 233
Query: 310 RSDVQGSTHCPVVLRL 325
DV GS HCPV L+L
Sbjct: 234 YPDVLGSDHCPVGLQL 249
>gi|225420139|ref|ZP_03762442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme
DSM 15981]
gi|225041196|gb|EEG51442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme
DSM 15981]
Length = 251
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/254 (42%), Positives = 152/254 (59%), Gaps = 11/254 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRACV K ++Y E + D+ LQ+ + QE ++ L YH +W
Sbjct: 3 KLISWNVNGLRACVGK-GFLDYFKEADADVFCLQETKLQEGQID----LDLPGYHQYWNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+P++V+YG+ G+ + GRVI A+F+ + +T Y PNS L
Sbjct: 58 AQKKGYSGTAMFTKEEPVSVRYGL-GIEEHDMEGRVIAAEFQEYFVVTCYTPNSQDGLAR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y++ +L +I GDLNV + IDL NP N K AG+T EER F
Sbjct: 117 LDYRMEWENAFLAYLK-KLEEEKPVIFCGDLNVAHKEIDLKNPKSNRKNAGFTDEERGKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL G +D FR+ YPD EG Y++WS+R SAR N GWR+DY SE L + + I
Sbjct: 176 TDLLGAGFIDTFRYFYPDREGIYSWWSYRF-SARAKNAGWRIDYFCASESLKDRLVSADI 234
Query: 310 RSDVQGSTHCPVVL 323
++V GS HCPV L
Sbjct: 235 HTEVMGSDHCPVEL 248
>gi|345861274|ref|ZP_08813541.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
gi|344325629|gb|EGW37140.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
Length = 250
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 161/256 (62%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACVK N +++ +EN DI +Q+ + QE+++P FR + Y+ +W
Sbjct: 1 MKLISWNVNGIRACVK-NGFLDFFAKENADIFCIQETKVQEEQIP--FR--VEGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + +K +P + YG+ +Q GRVIT +F + +TVY PNS L
Sbjct: 56 FAQKKGYSGTAIFSKMEPNKIVYGMGKEEHDQEGRVITLEFGEYYVVTVYTPNSQRGLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W++ F +Y++ +L ++ +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LEYRMKWEEDFLNYLK-DLENSKPVIVCGDLNVAHTEIDLKNPSTNRKNAGFSAEERNKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
EL++ G VD FR YP++ AYT+WS+ +AR NN GWR+DY VS L + +K+ II
Sbjct: 175 DELMNNGFVDTFRFFYPNKTEAYTWWSYM-FNARANNAGWRIDYFCVSAGLKDQLKEAII 233
Query: 310 RSDVQGSTHCPVVLRL 325
+V GS HCPV L +
Sbjct: 234 YKNVLGSDHCPVGLEI 249
>gi|335430178|ref|ZP_08557073.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
gi|334888594|gb|EGM26891.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
Length = 251
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/258 (43%), Positives = 163/258 (63%), Gaps = 10/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC+KK E+ E N D+ A+Q+ + QE++ F YH FW
Sbjct: 1 MKLVSWNVNGLRACMKK-GFKEFFNEMNADLFAIQETKMQEEQKTFDFEG----YHEFWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+DK G G + +K+KPL V YGI G N GR+IT +FK F F+T YVPNS L
Sbjct: 56 CADKKGYSGTLIYSKQKPLNVVYGIDGSKYNDEGRIITLEFKNFFFVTAYVPNSQRSLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM ++ F Y++ +L S +I+ GDLNV + IDL NP N K AG+T+EERR +
Sbjct: 116 LDYRMEFEDDFRAYLK-KLDSLKPVIMCGDLNVAHREIDLTNPKNNEKNAGFTIEERRKY 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ LLD G D++R+L+P E+ Y++WS+ +AR N GWR+DY ++S +L + D II
Sbjct: 175 QSLLDEGFTDSYRYLHP-EKVEYSWWSYM-FNARKRNIGWRIDYFVISNKLRGQLNDSII 232
Query: 310 RSDVQGSTHCPVVLRLSL 327
+ +GS HCP+ L + +
Sbjct: 233 HTQTEGSDHCPISLDIEV 250
>gi|160894365|ref|ZP_02075142.1| hypothetical protein CLOL250_01918 [Clostridium sp. L2-50]
gi|156864066|gb|EDO57497.1| exodeoxyribonuclease III [Clostridium sp. L2-50]
Length = 262
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/262 (41%), Positives = 160/262 (61%), Gaps = 11/262 (4%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+T +K+ +WNVNG+RACV KN +++ E + DI +Q+ + QE ++ + L Y+
Sbjct: 9 STTMKMISWNVNGIRACVGKN-FMDFFKEADADIFCIQESKMQEGQL----QLELPGYYQ 63
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + K++PL+V YGI G+ + GRVIT ++ F +TVY PNS
Sbjct: 64 YWNYAEKKGYSGTAIFAKKEPLSVAYGI-GIEEHDHEGRVITLEYDNFYMVTVYTPNSQN 122
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
+L +D+RM W+ F +Y++ +L +++ GD+NV IDL NP N K AG+T EE
Sbjct: 123 ELARLDYRMKWEDDFREYLK-QLEQTKPVVVCGDMNVAHTEIDLKNPKTNRKNAGFTDEE 181
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F LLD+G VD FR PD EG Y++WS+R K AR N GWR+DY L S+ L + +
Sbjct: 182 REKFSTLLDSGFVDTFRFFNPDAEGIYSWWSYRFK-AREKNAGWRIDYFLTSKVLESRLV 240
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I ++V GS HCPV L + L
Sbjct: 241 DAKIHTEVLGSDHCPVELDIDL 262
>gi|153812982|ref|ZP_01965650.1| hypothetical protein RUMOBE_03389 [Ruminococcus obeum ATCC 29174]
gi|149830929|gb|EDM86019.1| exodeoxyribonuclease III [Ruminococcus obeum ATCC 29174]
Length = 252
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 163/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RAC+ K + E + DI LQ+ +CQ+ +V L YH +W
Sbjct: 1 MKCISWNVNGIRACITKGF-EDRFRELDADIFCLQETKCQQGQV----ELELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ +G G + TK++P++VK GI G+ ++ GRVIT +FK F F+TVY PNS +L+
Sbjct: 56 YANRRGYSGTAVFTKKEPISVKNGI-GIEEHDKEGRVITLEFKEFYFVTVYTPNSQSELR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W++ F Y+ +L+ + +I GDLNV + IDL NP N K AG+T EER
Sbjct: 115 RLEYRMEWERDFLAYLL-KLQESKPVICCGDLNVAHEEIDLKNPKTNRKNAGFTDEERAC 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ++L++G +D FR+ YPD+EG Y++WS+R K AR N GWR+DY + S L ++
Sbjct: 174 FTKVLESGFIDTFRYFYPDKEGIYSWWSYRFK-AREKNAGWRIDYFITSPSLKEKLQGAA 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCP+ L + L
Sbjct: 233 IHTEIMGSDHCPIELDIDL 251
>gi|154688190|ref|YP_001423351.1| ExoA [Bacillus amyloliquefaciens FZB42]
gi|154354041|gb|ABS76120.1| ExoA [Bacillus amyloliquefaciens FZB42]
Length = 252
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 160/262 (61%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA +KK Y+ E DI+ LQ+ + Q+ +V PE YH
Sbjct: 1 MKLISWNVNGLRAVMKKIDINTYVQETAADILCLQETKVQDGQVSLQPEG-------YHA 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVSN--QRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +KEKPL V YG+ G+ + Q GRVIT +F+ + Y PN+
Sbjct: 54 YWNYAVKKGYSGTAVFSKEKPLHVLYGL-GIDDHDQEGRVITLEFEHVFVVNCYTPNAKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+R+ W+ F DY+Q +L +I+ GDLNV + IDL NP N K AG++ +E
Sbjct: 113 GLERIDYRLQWEADFKDYLQ-KLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSEQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F LL+ G D+FR+LYPD+EGAY++WS+R +AR N GWRLDY +VS++L I
Sbjct: 172 REAFSALLNAGFTDSFRYLYPDQEGAYSWWSYRT-NAREKNIGWRLDYVIVSDRLKQRIS 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + + L
Sbjct: 231 QAAICADIMGSDHCPVEMTVDL 252
>gi|254829588|ref|ZP_05234275.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284802226|ref|YP_003414091.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284995368|ref|YP_003417136.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|386054035|ref|YP_005971593.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
gi|258602005|gb|EEW15330.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284057788|gb|ADB68729.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284060835|gb|ADB71774.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|346646686|gb|AEO39311.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
Length = 251
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 161/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+++ +WNVNGLRA VKK +EY E + DI LQ+ + QE ++ L Y +W
Sbjct: 1 MRLISWNVNGLRAAVKK-GFLEYFEEVDADIFCLQETKLQEGQI----ELDLPAYKDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL+V+YG+ G+ + GRVIT +F+ F +TVY PNS +LK
Sbjct: 56 YAVKKGYSGTAIFTKVEPLSVQYGL-GIPEHDTEGRVITLEFEEFFMVTVYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM ++ +Y+++ L + +++ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTFEDAILEYVKN-LDNTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LD G +D+FR+ YPD AY++WS+R +AR N GWR+DY +VSE+L + + D
Sbjct: 174 FSAFLDAGFIDSFRYFYPDLTDAYSWWSYR-MNARARNTGWRIDYFVVSERLKDKLVDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +DV GS HCPV L L+
Sbjct: 233 IHADVLGSDHCPVELELNF 251
>gi|404413860|ref|YP_006699447.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|404239559|emb|CBY60960.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|441474667|emb|CCQ24421.1| Exodeoxyribonuclease [Listeria monocytogenes N53-1]
Length = 251
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 160/259 (61%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+++ +WNVNGLRA VKK +EY E + DI LQ+ + QE ++ L Y +W
Sbjct: 1 MRLISWNVNGLRAAVKK-GFLEYFEEVDADIFCLQETKLQEGQI----ELDLPAYKDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL+V+YG+ G+ + GRVIT +F+ F +TVY PNS +LK
Sbjct: 56 YAVKKGYSGTAIFTKVEPLSVQYGL-GIPEHDTEGRVITLEFEEFFMVTVYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM ++ +Y+++ L +++ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTFEDAILEYVKN-LDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LD G +D+FR+ YPD AY++WS+R +AR N GWR+DY +VSE+L + + D
Sbjct: 174 FSAFLDAGFIDSFRYFYPDLTDAYSWWSYR-MNARARNTGWRIDYFIVSERLKDKLVDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +DV GS HCPV L L+
Sbjct: 233 IHADVLGSDHCPVELELNF 251
>gi|394994125|ref|ZP_10386855.1| ExoA [Bacillus sp. 916]
gi|393805011|gb|EJD66400.1| ExoA [Bacillus sp. 916]
Length = 252
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 159/262 (60%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA +KK Y+ E DI+ LQ+ + Q+ +V PE YH
Sbjct: 1 MKLMSWNVNGLRAVMKKIDINTYVQETEADILCLQETKVQDGQVSLQPEG-------YHA 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVSN--QRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +KEKPL V YG+ G+ + Q GRVIT +F+ + Y PN+
Sbjct: 54 YWNYAVKKGYSGTAVFSKEKPLHVLYGL-GIDDHDQEGRVITLEFEHVFVVNCYTPNAKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+R+ W+ F DY+Q +L +I+ GDLNV + IDL NP N K AG++ +E
Sbjct: 113 GLERIDYRLQWEADFKDYLQ-KLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSEQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F LL+ G D+FR+LYPD EGAY++WS+R +AR N GWRLDY +VS++L I
Sbjct: 172 REAFSALLNAGFTDSFRYLYPDREGAYSWWSYRT-NAREKNIGWRLDYVIVSDRLKQRIS 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + + L
Sbjct: 231 QAAICADIMGSDHCPVEMTVDL 252
>gi|116873216|ref|YP_849997.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742094|emb|CAK21218.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 251
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 161/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VKK +EY E + DI LQ+ + QE ++ L Y +W
Sbjct: 1 MKLISWNVNGLRAAVKK-GFLEYFEEVDADIFCLQETKLQEGQI----ELDLKAYKDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL+V+YG+ G+ + GRVIT +F+ F +TVY PNS +LK
Sbjct: 56 YAVKKGYSGTAIFTKVEPLSVQYGL-GIPEHDTEGRVITLEFEAFFMVTVYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM ++ +YI++ L +++ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTFEDAILEYIKN-LDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LD G +D+FR+ YPD AY++WS+R +AR N GWR+DY +VS++L + + D
Sbjct: 174 FSAFLDAGFIDSFRYFYPDLTDAYSWWSYR-MNARARNTGWRIDYFVVSKRLKDKLVDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S+V GS HCPV L L+L
Sbjct: 233 IHSEVLGSDHCPVELELNL 251
>gi|118375590|ref|XP_001020979.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila]
gi|89302746|gb|EAS00734.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila
SB210]
Length = 396
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/263 (41%), Positives = 173/263 (65%), Gaps = 10/263 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDE-VPESFRKSL-SHYHMF 129
+K++ WNVNGLRA +K+ +YI +ENPDI+ L + + E + E K + S Y+ +
Sbjct: 117 IKIACWNVNGLRAVLKREDLQKYIKQENPDILCLNETKIDESNFIKEKVYKDIPSGYYQY 176
Query: 130 W---IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRFTFITVYVPNSGI 185
W I KG GV + +KEK +++K GI ++ GRV+TA+F +F + VYVPN+G
Sbjct: 177 WNFCIPPIKGYSGVSIFSKEKVISIKKGIDIAEHENEGRVLTAEFDKFYLVVVYVPNAGS 236
Query: 186 KLKAIDFRM-IWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVE 244
+L +D+R+ +D+ F +Y+ ++L+ N+I+ GDLNV Q ID+ANP N + G+T+E
Sbjct: 237 ELVRLDYRVNSFDKDFQNYL-NQLKLKKNVILCGDLNVAHQEIDIANPKSNRNSPGFTIE 295
Query: 245 ERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
ER +F + L++G +D FR LYP E Y++WS R K AR +N GWR+DY +V+++ ++I
Sbjct: 296 ERNSFSKFLESGWIDTFRFLYP-ETIKYSWWSVRTK-ARESNIGWRIDYFVVNKEFKSSI 353
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
KD +I +++ GS HCPV L+L
Sbjct: 354 KDSMINNNIYGSDHCPVEFILNL 376
>gi|336429860|ref|ZP_08609818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336001765|gb|EGN31900.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 252
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/257 (43%), Positives = 154/257 (59%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ E + DI +Q+ + QE ++ L YH +W
Sbjct: 1 MKLVSWNVNGLRACMGK-GFMDFFKEADADIFCIQESKLQEGQI----SLELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKE+PL+V YG+ G+ +Q GRVIT +F F +TVY PNS L
Sbjct: 56 YAVKKGYSGTAIFTKEEPLSVSYGL-GLEEHDQEGRVITLEFPDFYMVTVYTPNSQDGLA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W++ F +L +I GDLNV + IDL NP N K AG+T EER
Sbjct: 115 RLDYRMTWEEEFLK-YLKKLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL+ G +D FR+ YPD + AY++WS+R AR N GWR+DY LVS QL ++D +
Sbjct: 174 FSVLLENGFIDTFRYFYPDLKDAYSWWSYRFH-AREKNAGWRIDYFLVSPQLKERLEDAV 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I DV GS HCPV L L
Sbjct: 233 IYKDVFGSDHCPVALIL 249
>gi|407014279|gb|EKE28316.1| hypothetical protein ACD_3C00079G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 154/258 (59%), Gaps = 5/258 (1%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVN +RA +KK +EYI +E PDI+A+Q+++ ED+ P L Y ++W
Sbjct: 1 MKFISWNVNWIRASIKK-WFIEYIQDEKPDIIAMQEVKATEDQFPARLEMELMWYSIYWN 59
Query: 132 GSDKGQ-GGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ K + TKEKPL V Y + + R+IT +F++F FITVY PNS +L
Sbjct: 60 AAFKNWYSWTAIFTKEKPLEVTYWLWIWEHDNEWRIITLEFEKFYFITVYTPNSKRELNR 119
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++R +WD F DY++ L N +++ DLNV + IDL NP N AG+T EER F
Sbjct: 120 LEYRQLWDSLFLDYMR-RLEVNKPVVVCWDLNVAHKEIDLKNPKPNRWNAGFTDEEREGF 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
++ L+ G +D FR+ YP++ AY++WS AR N GWR+DY L S L +N+KD I
Sbjct: 179 QKFLNAGFIDTFRYFYPEKTEAYSWWS-NFAFARDRNIGWRIDYFLTSWGLKDNLKDAFI 237
Query: 310 RSDVQGSTHCPVVLRLSL 327
+ GS HCPV L + +
Sbjct: 238 MDQILGSDHCPVWLEIEI 255
>gi|346986376|ref|NP_001231340.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
gi|4106095|gb|AAD02702.1| apurinic/apyrimidinic endonuclease [Cricetulus griseus]
gi|344257035|gb|EGW13139.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
Length = 317
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 166/260 (63%), Gaps = 7/260 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P + H +W
Sbjct: 61 LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQDLPGLTHQYWS 119
Query: 132 G-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YVPN+G L
Sbjct: 120 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 179
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++R WD+ F +++ +L S +++ GDLNV + IDL NP N K AG+T +ER+
Sbjct: 180 RLEYRQRWDKAFCKFLK-DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQG 238
Query: 249 FRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S L +++ D
Sbjct: 239 FGELLQAVPLTDSFRHLYPNTPYAYTFWTYM-MNARAKNVGWRLDYFLLSHSLLSSLCDS 297
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
IRS GS HCP+ L L+L
Sbjct: 298 KIRSKALGSDHCPITLYLAL 317
>gi|160936797|ref|ZP_02084163.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC
BAA-613]
gi|158440289|gb|EDP18035.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC
BAA-613]
Length = 251
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/255 (43%), Positives = 151/255 (59%), Gaps = 11/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
K+ +WNVNGLRACV K +++ E D+ +Q+ + QE ++ L YH +W
Sbjct: 2 TKLISWNVNGLRACVGK-GFLDFFREAEADVFCIQESKLQEGQI----ELDLPGYHQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKE+P++V YGI G+ + GRVITA+F + +T Y PNS L
Sbjct: 57 YARKKGYSGTAMFTKEEPVSVSYGI-GMEEHDTEGRVITAEFPEYYVVTCYTPNSQDGLA 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ +L N ++ GDLNV + IDL NP N K AG+T EER
Sbjct: 116 RLDYRMKWEDDFLAYLK-KLEENKPVVFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL G VD FR+ YPD EG Y++WS+R SAR N GWR+DY VSE L + +
Sbjct: 175 FTDLLAAGFVDTFRYFYPDLEGTYSWWSYRF-SARAKNAGWRIDYFCVSESLKDRLVSAS 233
Query: 309 IRSDVQGSTHCPVVL 323
I + V GS HCPV L
Sbjct: 234 IHNTVMGSDHCPVEL 248
>gi|375364493|ref|YP_005132532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421729528|ref|ZP_16168658.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|371570487|emb|CCF07337.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407076498|gb|EKE49481.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 252
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 160/259 (61%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KK Y+ E DI+ LQ+ + Q+ +V L YH +W
Sbjct: 1 MKLISWNVNGLRAVMKKIDINTYVQETKADILCLQETKVQDGQVS----LQLEGYHDYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSN--QRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +KEKPL V YG+ G+ + Q GRVIT +F+ + Y PN+ L+
Sbjct: 57 YAVKKGYSGTAVFSKEKPLHVFYGL-GIDDHDQEGRVITLEFENLFVVNCYTPNAKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
ID+R+ W+ F +Y+Q +L +I+ GDLNV + IDL NP N K AG++ +ER
Sbjct: 116 RIDYRLQWEADFKEYLQ-KLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSDQEREA 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL+TG D+FR+LYPD EGAY++WS+R +AR N GWRLDY +VS++L I +
Sbjct: 175 FSALLNTGFTDSFRYLYPDREGAYSWWSYRT-NAREKNIGWRLDYVIVSDRLKPRISEAA 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + + L
Sbjct: 234 ICADIMGSDHCPVEMTVDL 252
>gi|225569150|ref|ZP_03778175.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
gi|225161949|gb|EEG74568.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
Length = 250
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 156/257 (60%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RACV+K +++ E + DI +Q+ + QE ++ Y +W
Sbjct: 1 MKCISWNVNGIRACVQKGF-MDFFQEADADIFCIQETKMQEGQL----ELETPGYFQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+ GI G+ ++ GRVIT +F+ F F+TVY PNS +L
Sbjct: 56 YAERKGYSGTAVFTKKEPLSFTCGI-GIEEHDKEGRVITLEFEEFYFVTVYTPNSQSELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y++ +L +I GDLNV + IDL NP N K AG+T EER
Sbjct: 115 RLSYRMEWEDAFLAYLK-KLEEKKPVIFCGDLNVAAEEIDLKNPKTNRKNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
FR++ +G VD FR+ YPDEEG Y++WS+R + AR N GWR+DY VS+ L ++D
Sbjct: 174 FRKIKASGFVDTFRYFYPDEEGIYSWWSYRFR-AREKNAGWRIDYFCVSQSLKERLEDAR 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +DV GS HCPV L L
Sbjct: 233 IHTDVMGSDHCPVELDL 249
>gi|452857678|ref|YP_007499361.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452081938|emb|CCP23712.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 252
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 159/262 (60%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA +KK Y+ E DI+ LQ+ + Q+ +V PE YH
Sbjct: 1 MKLISWNVNGLRAVMKKIDINTYVQETEADILCLQETKVQDGQVSLQPEG-------YHA 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVSN--QRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +KEKPL V YG+ G+ + Q GRVIT +F+ + Y PN+
Sbjct: 54 YWNYAVKKGYSGTAVFSKEKPLHVFYGL-GIDDHDQEGRVITLEFENVFVVNCYTPNAKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+R+ W+ F DY+Q +L +I+ GDLNV + IDL NP N K AG++ +E
Sbjct: 113 GLERIDYRLQWEADFKDYLQ-KLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSEQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F LL+ G D+FR+LYPD EGAY++WS+R +AR N GWRLDY +VS++L I
Sbjct: 172 REAFSALLNAGFTDSFRYLYPDREGAYSWWSYRT-NAREKNIGWRLDYVIVSDRLKQRIS 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + + L
Sbjct: 231 QAAICADIMGSDHCPVEMTVDL 252
>gi|299143331|ref|ZP_07036411.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298517816|gb|EFI41555.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 250
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/257 (43%), Positives = 161/257 (62%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KK V+ E N D+ ALQ+I+ E ++ L Y M++
Sbjct: 1 MKLVSWNVNGLRAVIKK-GFVDSFNEINADVFALQEIKLSEGQLD----FELEGYKMYYN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + T+ +P++V YGI G+ + GRVITA+F++F F+T Y PNS L+
Sbjct: 56 YAQRKGYSGTAIFTRIEPISVSYGI-GMEEHDTEGRVITAEFEKFYFVTCYTPNSKRGLE 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM+W+ F +Y+ ++LR +++ GDLNV + IDLANP N K AG+T EER
Sbjct: 115 RLEYRMVWEDVFRNYL-NKLRETKPVVLCGDLNVAHEEIDLANPATNHKNAGFTNEERSK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL +G +D FR+ YPD + Y++WS KS R N GWR+DY +VSE+L N+ D
Sbjct: 174 FTELLKSGYIDTFRYFYPDRKDEYSWWSNFAKS-RERNIGWRIDYFVVSEELKGNLSDAK 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I V GS HCPV L L
Sbjct: 233 IHQSVMGSDHCPVELVL 249
>gi|260682949|ref|YP_003214234.1| exodeoxyribonuclease [Clostridium difficile CD196]
gi|260686547|ref|YP_003217680.1| exodeoxyribonuclease [Clostridium difficile R20291]
gi|260209112|emb|CBA62286.1| putative exodeoxyribonuclease [Clostridium difficile CD196]
gi|260212563|emb|CBE03542.1| putative exodeoxyribonuclease [Clostridium difficile R20291]
Length = 255
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 162/259 (62%), Gaps = 9/259 (3%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K +WNVNG+RACV K +++ E + DI LQ+ + QE ++ L Y
Sbjct: 3 SISMKFISWNVNGIRACVGK-GFLDFFKEVDADIFCLQETKLQEGQI----ELDLPGYFQ 57
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIK 186
+W KG G + TK++PL V YGI ++ GRVIT +F+ F F+TVY PNS +
Sbjct: 58 YWNYAERKGYSGTAIFTKKEPLKVMYGINIEEHDKEGRVITLEFEDFYFVTVYTPNSQSE 117
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
LK +++R W+ F DY+ ++L ++ +I+ GD+NV + IDL NP N+K AG+T EER
Sbjct: 118 LKRLEYRTRWEDDFIDYL-TKLDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEER 176
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
F +LLD+G +D +R+ PD+EG Y++WS+R +AR NN GWR+DY S++L + +
Sbjct: 177 EKFSKLLDSGFIDTYRYFNPDKEGVYSWWSYRF-NARKNNAGWRIDYFCASKKLEDRLVS 235
Query: 307 CIIRSDVQGSTHCPVVLRL 325
I +++ GS HCPV L +
Sbjct: 236 ADIHTEILGSDHCPVELEI 254
>gi|289435119|ref|YP_003464991.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171363|emb|CBH27905.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 251
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 161/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VKK +EY + DI LQ+ + Q ++ L Y +W
Sbjct: 1 MKLISWNVNGLRAAVKK-GFLEYFDSVDADIFCLQETKLQAGQID----LDLPAYKDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V+YG+ G+ + GRVIT +F++F +TVY PNS +LK
Sbjct: 56 YAVKKGYSGTAIFTKKEPLSVQYGL-GIEEHDTEGRVITLEFEKFFMVTVYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM ++ Y++ +L +++ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTFEDAILAYVK-KLDETKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F L+ G VD+FR+ YPD E AY++WS+R +AR N GWR+DY +VSE+L +N+ D
Sbjct: 174 FTAFLEAGFVDSFRYFYPDLEDAYSWWSYR-MNARARNIGWRIDYFVVSERLKDNLVDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I DV GS HCPV L L++
Sbjct: 233 IHPDVLGSDHCPVELELNI 251
>gi|154484298|ref|ZP_02026746.1| hypothetical protein EUBVEN_02011 [Eubacterium ventriosum ATCC
27560]
gi|149734775|gb|EDM50692.1| exodeoxyribonuclease III [Eubacterium ventriosum ATCC 27560]
Length = 251
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 162/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACV K +++ E + DI +Q+ + QE ++ + Y+ +W
Sbjct: 1 MKLISWNVNGIRACVTK-GFMDFFNEIDADIFCIQESKMQEGQL----ELEMPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++P+ VKYGI G+ + GRVIT +F+ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFTKKEPMDVKYGI-GIEEHDHEGRVITLEFEDFYMVTCYTPNSQNELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ +L + +++ GDLNV + IDL NP N K AG+T EER
Sbjct: 115 RLDYRMQWEDDFKAYLK-KLEESKPVVLCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LLD G +D FR+ YPD EG Y++WS+R K AR N GWR+DY +VSE L + ++
Sbjct: 174 MTKLLDDGFIDTFRYFYPDLEGKYSWWSYRFK-AREKNAGWRIDYFIVSEALKDKLEGAD 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCP+ L L++
Sbjct: 233 IHTEILGSDHCPIELDLNI 251
>gi|355673738|ref|ZP_09059213.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
gi|354814451|gb|EHE99051.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
Length = 251
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 109/255 (42%), Positives = 151/255 (59%), Gaps = 11/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
K+ +WNVNGLRACV K +++ + D+ +Q+ + QE ++ L YH +W
Sbjct: 2 AKLISWNVNGLRACVGK-GFLDFFQAVDADVFCIQESKLQEGQI----ELDLPGYHQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + T+E+P++V YGI G+ + GRVITA+F + +T Y PNS L
Sbjct: 57 YARKKGYSGTAVFTREEPISVAYGI-GMEEHDTEGRVITAEFPEYYVVTCYTPNSQDGLA 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ L N +I GDLNV + IDL NP N K AG+T EER
Sbjct: 116 RLDYRMKWEDDFLSYLKG-LEKNKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL G +D FR+ YPD EG Y++WS+R SAR N GWR+DY VSE L + +
Sbjct: 175 FTDLLSAGFIDTFRYFYPDMEGIYSWWSYRF-SARAKNAGWRIDYFCVSESLKDRLVSAS 233
Query: 309 IRSDVQGSTHCPVVL 323
I +D+ GS HCPV L
Sbjct: 234 IHTDIMGSDHCPVEL 248
>gi|365854004|ref|ZP_09394256.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
gi|363711540|gb|EHL95270.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
Length = 250
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 151/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKK+ + + + D ++Q+ + QE ++ L YH ++
Sbjct: 1 MKFISWNVNGLRAVVKKDFAATFN-KLDADFFSIQETKMQEGQL----ELDLPGYHQYFN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G L K++P++V YGI + GR IT ++ F +T YVPNSG LK
Sbjct: 56 YAERKGYSGTALFAKQEPMSVMYGIQSDEFDHEGRAITLEYPDFYLVTSYVPNSGAGLKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+DFRM WD F DY+ S L +I+ GDLNV ++IDL NP N AG+T EER +F
Sbjct: 116 LDFRMGWDAAFQDYL-SRLDKEKPVILCGDLNVAHKTIDLKNPQSNHHNAGFTDEERDSF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LD G +D+FRH YPD E Y++WS+R AR N GWR+DY + S +LA I D I
Sbjct: 175 TRFLDMGFMDSFRHFYPDMEDIYSWWSYRFH-ARDRNAGWRIDYFVTSNRLAPKIADSKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 LTDIYGSDHCPVALIL 249
>gi|290562880|gb|ADD38834.1| DNA-apurinic or apyrimidinic site lyase [Lepeophtheirus salmonis]
Length = 317
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/261 (43%), Positives = 161/261 (61%), Gaps = 7/261 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILE-ENPDIMALQQIRCQEDEVPESFRKSLSHYH 127
+ +K+++WNV G+RA +KK + + Y+LE E PDI LQ+ +C E ++P ++ + H
Sbjct: 58 SCNLKITSWNVAGVRAWIKKGS-LSYLLETEKPDIFCLQETKCSETKIPCELKELKDYPH 116
Query: 128 MFWIGSDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
FW + K G GV L +K KPL V+ G+ ++ GR+I A+F+ F +T YVPN+G
Sbjct: 117 QFWAFAKKEGYSGVALFSKVKPLDVQVGLQSQDHDEEGRIIIAEFEFFFLLTTYVPNAGR 176
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
KL +D R+ WD EL +I SGDLNV IDLANP N K AG+T EE
Sbjct: 177 KLVTLDKRLDWDL-LLRKKMKELNKKKPVIASGDLNVAHTEIDLANPKTNQKNAGFTPEE 235
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ-LANNI 304
R F +LL G VD +R L P++ GAYT+W++ +AR N GWRLDY L+S++ +N+
Sbjct: 236 RAGFDDLLSLGFVDTYRKLNPEKTGAYTFWTYM-MNARAKNVGWRLDYFLISDRWFESNV 294
Query: 305 KDCIIRSDVQGSTHCPVVLRL 325
D +IRS V GS HCP+ L L
Sbjct: 295 CDSVIRSKVLGSDHCPISLLL 315
>gi|374315128|ref|YP_005061556.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350772|gb|AEV28546.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 271
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/255 (44%), Positives = 153/255 (60%), Gaps = 8/255 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
VK+ +WNVNGLRAC KK EY+ + DI LQ+ + QED++ LS YH FW
Sbjct: 23 VKLISWNVNGLRACQKK-GFEEYLSRADADIFCLQETKLQEDQIA---LDKLS-YHTFWS 77
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G L +K +P++V I + GR +TA+F+ + I Y PNS KL I
Sbjct: 78 FAEKKGYSGTALFSKIQPISVSREIGHPLDSEGRTVTAEFEDYFVICCYTPNSQEKLARI 137
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+ RM WD F Y+ S+L ++I GDLNV IDL NP +N + AGY+++ER+ F
Sbjct: 138 ELRMDWDAAFRKYV-SDLDKKKPVLICGDLNVAHNPIDLKNPKQNEQNAGYSIQERQGFS 196
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
LL +G D+FR+LYPD+ AY++WS+R AR N GWR+DY L S++ +IKD II
Sbjct: 197 TLLASGFTDSFRYLYPDKTDAYSWWSYRFH-AREKNIGWRIDYWLASKRFEQHIKDSIIE 255
Query: 311 SDVQGSTHCPVVLRL 325
V GS H PVVL L
Sbjct: 256 DQVLGSDHAPVVLVL 270
>gi|313144803|ref|ZP_07806996.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|313129834|gb|EFR47451.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|396078071|dbj|BAM31447.1| exodeoxyribonuclease [Helicobacter cinaedi ATCC BAA-847]
Length = 251
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 167/259 (64%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC+ K +++ E N DI +Q+ + Q+D+ SF+ Y +W
Sbjct: 1 MKLISWNVNGLRACMNK-GFMDFFNEVNADIFCIQESKMQKDQGDFSFQG----YSEYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G GV +L+K KPL V Y + G+S ++ GR+ITA+++RF + VY PN+ +L+
Sbjct: 56 SAEKKGYSGVVVLSKIKPLQVTYDM-GISHHDKEGRIITAEYERFYLVNVYTPNAKRELE 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F +++ +L+ + ++I GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLEYRMEWEDDFRAFVK-KLKKHKPVVICGDLNVAHKEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL++G +D FRH YP EGAY++WS+ K AR NN GWR+DY L S L +++KD
Sbjct: 174 MSELLESGFIDTFRHFYPTLEGAYSWWSYMGK-ARENNTGWRIDYFLCSTSLESHLKDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + GS HCPV L + +
Sbjct: 233 IYPHIFGSDHCPVGLSMDM 251
>gi|126698940|ref|YP_001087837.1| exodeoxyribonuclease [Clostridium difficile 630]
gi|254974886|ref|ZP_05271358.1| putative exodeoxyribonuclease [Clostridium difficile QCD-66c26]
gi|255092273|ref|ZP_05321751.1| putative exodeoxyribonuclease [Clostridium difficile CIP 107932]
gi|255100359|ref|ZP_05329336.1| putative exodeoxyribonuclease [Clostridium difficile QCD-63q42]
gi|255306301|ref|ZP_05350472.1| putative exodeoxyribonuclease [Clostridium difficile ATCC 43255]
gi|255314013|ref|ZP_05355596.1| putative exodeoxyribonuclease [Clostridium difficile QCD-76w55]
gi|255516693|ref|ZP_05384369.1| putative exodeoxyribonuclease [Clostridium difficile QCD-97b34]
gi|255649791|ref|ZP_05396693.1| putative exodeoxyribonuclease [Clostridium difficile QCD-37x79]
gi|306519893|ref|ZP_07406240.1| putative exodeoxyribonuclease [Clostridium difficile QCD-32g58]
gi|384360536|ref|YP_006198388.1| exodeoxyribonuclease III [Clostridium difficile BI1]
gi|423090927|ref|ZP_17079213.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
gi|115250377|emb|CAJ68199.1| Exodeoxyribonuclease [Clostridium difficile 630]
gi|357556042|gb|EHJ37664.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
Length = 250
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 161/256 (62%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RACV K +++ E + DI LQ+ + QE ++ L Y +W
Sbjct: 1 MKFISWNVNGIRACVGK-GFLDFFKEVDADIFCLQETKLQEGQI----ELDLPGYFQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL V YGI ++ GRVIT +F+ F F+TVY PNS +LK
Sbjct: 56 YAERKGYSGTAIFTKKEPLKVMYGINIEEHDKEGRVITLEFEDFYFVTVYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++R W+ F DY+ ++L ++ +I+ GD+NV + IDL NP N+K AG+T EER F
Sbjct: 116 LEYRTRWEDDFIDYL-TKLDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LLD+G +D +R+ PD+EG Y++WS+R +AR NN GWR+DY S++L + + I
Sbjct: 175 SKLLDSGFIDTYRYFNPDKEGVYSWWSYRF-NARKNNAGWRIDYFCASKKLEDRLVSADI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+++ GS HCPV L +
Sbjct: 234 HTEILGSDHCPVELEI 249
>gi|386760994|ref|YP_006234629.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
gi|385146010|dbj|BAM11518.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
Length = 251
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 167/259 (64%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC+ K +++ E N DI +Q+ + Q+D+ SF+ Y +W
Sbjct: 1 MKLISWNVNGLRACMNK-GFMDFFNEVNADIFCIQESKMQKDQGDFSFQG----YSEYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G GV +L+K KPL V Y + G+S ++ GR+ITA+++RF + VY PN+ +L+
Sbjct: 56 SAEKKGYSGVVVLSKIKPLQVAYDM-GISHHDKEGRIITAEYERFYLVNVYTPNAKRELE 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F +++ +L+ + ++I GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLEYRMEWEDDFRAFVK-KLKKHKPVVICGDLNVAHKEIDLKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL++G +D FRH YP EGAY++WS+ K AR NN GWR+DY L S L +++KD
Sbjct: 174 MSELLESGFIDTFRHFYPTLEGAYSWWSYMGK-ARENNTGWRIDYFLCSTSLESHLKDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + GS HCPV L + +
Sbjct: 233 IYPHIFGSDHCPVGLSMDM 251
>gi|422422487|ref|ZP_16499440.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
gi|313637385|gb|EFS02862.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
Length = 251
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 159/259 (61%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VKK +EY + DI LQ+ + Q ++ L Y +W
Sbjct: 1 MKLISWNVNGLRAAVKK-GFLEYFDSVDADIFCLQETKLQAGQI----DLDLPAYKDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL+V+YG+ G+ + GRVIT +F +F +TVY PNS +LK
Sbjct: 56 YAVKKGYSGTAIFTKTEPLSVQYGL-GIPEHDDEGRVITLEFDKFFMVTVYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM ++ Y++ +L +++ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTFEDAILAYVK-KLDETKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F L+ G VD+FR+ YPD E AY++WS+R +AR N GWR+DY +VSE+L +N+ D
Sbjct: 174 FTAFLEAGFVDSFRYFYPDLEDAYSWWSYR-MNARARNTGWRIDYFVVSERLKDNLVDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I DV GS HCPV L L++
Sbjct: 233 IHPDVLGSDHCPVELELNI 251
>gi|423082270|ref|ZP_17070862.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
gi|423087662|ref|ZP_17076048.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357543976|gb|EHJ25982.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357548596|gb|EHJ30456.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
Length = 250
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 161/256 (62%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RACV K +++ E + D+ LQ+ + QE ++ L Y +W
Sbjct: 1 MKFISWNVNGIRACVGK-GFLDFFKEVDADVFCLQETKLQEGQI----ELDLPGYFQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL V YGI ++ GRVIT +F+ F F+TVY PNS +LK
Sbjct: 56 YAERKGYSGTAIFTKKEPLKVMYGINIEEHDKEGRVITLEFEDFYFVTVYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++R W+ F DY+ ++L ++ +I+ GD+NV + IDL NP N+K AG+T EER F
Sbjct: 116 LEYRTRWEDDFIDYL-TKLDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LLD+G +D +R+ PD+EG Y++WS+R +AR NN GWR+DY S++L + + I
Sbjct: 175 SKLLDSGFIDTYRYFNPDKEGVYSWWSYRF-NARKNNAGWRIDYFCASKKLEDRLVSADI 233
Query: 310 RSDVQGSTHCPVVLRL 325
++V GS HCPV L +
Sbjct: 234 HTEVLGSDHCPVELEI 249
>gi|257783920|ref|YP_003179137.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
gi|257472427|gb|ACV50546.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
Length = 259
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 112/263 (42%), Positives = 159/263 (60%), Gaps = 11/263 (4%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEVPESFRKSLSHYH 127
T + K+ +WNVNGLRA +KK I E N D+ ALQ+ + QE +V L Y
Sbjct: 4 TQEYKLISWNVNGLRAVLKKEPSFTEIFETINADVFALQETKLQEGQV----ELDLPGYV 59
Query: 128 MFWIGSD-KGQGGVGLLTKEKPLTV--KYGIPGVSNQRGRVITAKFKRFTFITVYVPNSG 184
W +D KG G + ++E PL V + G P V++ GRV +F++F F+ VY PNS
Sbjct: 60 QTWNYADRKGYSGTAVFSRETPLQVIRQIGCP-VADDEGRVCALEFEKFWFVCVYTPNSK 118
Query: 185 IKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVE 244
+L +D R+ WDQH+ D++ +EL +I GD NV IDL NP N + AG++ E
Sbjct: 119 DQLARLDERLEWDQHYRDFL-AELSKQKPVITCGDFNVAHNEIDLKNPSSNRQNAGFSDE 177
Query: 245 ERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
ER +F +LLD G D FR+ +PD GAY++WS+R +AR NN GWR+DY LVS+++A +
Sbjct: 178 ERESFTKLLDAGFTDTFRYRHPDITGAYSWWSYR-FNARKNNAGWRIDYFLVSDRIAEQV 236
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
K I S++ GS HCP+ L + L
Sbjct: 237 KSASILSEIYGSDHCPIELSIEL 259
>gi|357054575|ref|ZP_09115657.1| exodeoxyribonuclease [Clostridium clostridioforme 2_1_49FAA]
gi|355384175|gb|EHG31244.1| exodeoxyribonuclease [Clostridium clostridioforme 2_1_49FAA]
Length = 251
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 110/255 (43%), Positives = 152/255 (59%), Gaps = 11/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
K+ +WNVNGLRACV K +++ E + ++ +Q+ + QE ++ L YH +W
Sbjct: 2 TKLISWNVNGLRACVGK-GFLDFFREADANVFCIQESKLQEGQI----ELDLPGYHQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKE+P++V YGI G+ + GRVITA+F + +T Y PNS L
Sbjct: 57 YARKKGYSGTAMFTKEEPMSVSYGI-GMEEHDTEGRVITAEFPEYYVVTCYTPNSQDGLA 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ +L N ++ GDLNV + IDL NP N K AG+T EER
Sbjct: 116 RLDYRMKWEDDFLAYLK-KLEKNKPVVFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL G VD FR+ YPD EG Y++WS+R SAR N GWR+DY VSE L + +
Sbjct: 175 FTDLLAAGFVDTFRYFYPDLEGIYSWWSYRF-SARAKNAGWRIDYFCVSESLKDRLVSAS 233
Query: 309 IRSDVQGSTHCPVVL 323
I + V GS HCPV L
Sbjct: 234 IHNTVMGSDHCPVEL 248
>gi|315303668|ref|ZP_07874193.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627958|gb|EFR96566.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
Length = 251
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 160/259 (61%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VKK +EY + DI LQ+ + Q ++ L Y +W
Sbjct: 1 MKLISWNVNGLRAVVKK-GFLEYFDSVDADIFCLQETKLQAGQID----LDLPGYKDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V+YG+ G+ + GRVIT +F+ F +TVY PNS +LK
Sbjct: 56 YAVKKGYSGTAIFTKKEPLSVQYGL-GIEEHDTEGRVITLEFENFFMVTVYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM ++ Y++ +L +I+ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTFEDAILAYVK-KLDETKPVILCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F L+ G VD+FR+ YPD E AY++WS+R +AR N GWR+DY +VSE+L +N+ D
Sbjct: 174 FTAFLEAGFVDSFRYFYPDLEDAYSWWSYR-MNARARNTGWRIDYFVVSERLKDNLVDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I DV GS HCPV L L++
Sbjct: 233 IHPDVLGSDHCPVELELNV 251
>gi|266623165|ref|ZP_06116100.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
gi|288865076|gb|EFC97374.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
Length = 251
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 150/254 (59%), Gaps = 11/254 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRACV K ++Y E + DI +Q+ + E ++ LS YH +W
Sbjct: 3 KLISWNVNGLRACVGK-GFLDYFKEVDADIFCIQESKLSEGQI----ELELSGYHQYWNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+PL+V YGI G+ + GRVITA+F + +T Y PNS L
Sbjct: 58 AEKKGYSGTAMFTKEEPLSVAYGI-GIEEHDHEGRVITAEFSDYYVVTCYTPNSKDGLAR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM+W+ F Y++ L +I GDLNV + IDL NP N K AG+T EER F
Sbjct: 117 LPYRMVWEDAFLRYLKG-LEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LLD G +D FR YPD E Y++WS+R SAR N GWR+DY VSE L + + I
Sbjct: 176 TDLLDAGFIDTFRWFYPDREEIYSWWSYRF-SARSKNAGWRIDYFCVSEALKDRLVSADI 234
Query: 310 RSDVQGSTHCPVVL 323
++V GS HCPV L
Sbjct: 235 HTEVLGSDHCPVEL 248
>gi|226309896|ref|YP_002769790.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
gi|226092844|dbj|BAH41286.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
Length = 253
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 148/256 (57%), Gaps = 7/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K EY E N DI LQ+ + QE ++ ++ YH +W
Sbjct: 1 MKLISWNVNGLRACVNK-GFYEYFKEANADIFCLQETKLQEGQIEMEIGEA---YHQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + TK +PL+V+YG+ GRVIT +F+ F +TVY PN+ L +
Sbjct: 57 YAEKKGYSGTAVFTKMEPLSVRYGLEEDHEPEGRVITLEFQDFYLVTVYTPNAKRDLSRL 116
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+R+ W+ F +Y+ +L +++ GDLNV Q IDL N N +G+T EER
Sbjct: 117 DYRLEWEDRFRNYLL-QLDGKKPVVVCGDLNVAHQEIDLKNAKSNRGNSGFTPEEREKMT 175
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
LL G VD +R+ YPD+ AYT+WSF K R N GWR+DY L SE+LA + I
Sbjct: 176 SLLAAGFVDTYRYFYPDQTDAYTWWSFMPK-VRERNIGWRIDYFLASERLAPALLRAGID 234
Query: 311 SDVQGSTHCPVVLRLS 326
S V GS HCPVVL L
Sbjct: 235 SQVMGSDHCPVVLELG 250
>gi|385267001|ref|ZP_10045088.1| ExoA [Bacillus sp. 5B6]
gi|385151497|gb|EIF15434.1| ExoA [Bacillus sp. 5B6]
Length = 252
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 158/262 (60%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA +KK Y+ E DI+ LQ+ + Q+ +V PE YH
Sbjct: 1 MKLISWNVNGLRAVMKKIDINTYVQETEADILCLQETKVQDGQVSLQPEG-------YHA 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVSN--QRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +KEKPL V YG+ G+ + Q GRVIT +F+ + Y PN+
Sbjct: 54 YWNYAVKKGYSGTAVFSKEKPLHVFYGL-GIDDHDQEGRVITLEFENVFVVNCYTPNAKR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+R+ W+ F DY+Q +L +I+ GDLNV + IDL NP N K AG++ +E
Sbjct: 113 GLERIDYRLQWEADFKDYLQ-KLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSEQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F LL+ G D FR+LYPD EGAY++WS+R +AR N GWRLDY +VS++L I
Sbjct: 172 REAFSALLNAGFTDTFRYLYPDREGAYSWWSYRT-NAREKNIGWRLDYVIVSDRLKPRIN 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + + L
Sbjct: 231 QAAICADIMGSDHCPVEMTVDL 252
>gi|302388430|ref|YP_003824252.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
gi|302199058|gb|ADL06629.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
Length = 251
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/253 (42%), Positives = 153/253 (60%), Gaps = 9/253 (3%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRACV+K ++Y E + D+ +Q+ + QE ++ +L YH +W
Sbjct: 3 KMISWNVNGLRACVEKGF-LDYFKEMDADVFCIQESKLQEGQID----LTLPGYHQYWNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G L TKEKPL+V YGI + R GRVI A++ + +T Y PNS +L +
Sbjct: 58 AEKKGYSGTALFTKEKPLSVAYGINAEEHDREGRVIAAEYPEYYVVTCYTPNSQNELARL 117
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+R+ W+ Y++ +L +I GDLNV + IDL NP N K AG+T EER F
Sbjct: 118 PYRLTWEDAVLAYLK-KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKFT 176
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
LL++G +D +R+ YP++EG Y++WS+R SAR N GWR+DY VSE L + + I
Sbjct: 177 VLLESGFIDTYRYFYPEQEGIYSWWSYRF-SARKKNAGWRIDYFCVSESLKDRLASAAIH 235
Query: 311 SDVQGSTHCPVVL 323
++V GS HCPV L
Sbjct: 236 TEVLGSDHCPVEL 248
>gi|451344782|ref|YP_007443413.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
gi|449848540|gb|AGF25532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 252
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 159/259 (61%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KK Y+ E DI+ LQ+ + Q+ +V L YH +W
Sbjct: 1 MKLISWNVNGLRAVMKKIDINTYVQETKADILCLQETKVQDGQVS----LQLEGYHDYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSN--QRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +KEKPL V YG+ G+ + Q GRVIT +F+ + Y PN+ L+
Sbjct: 57 YAVKKGYSGTAVFSKEKPLHVFYGL-GIDDHDQEGRVITLEFENLFVVNCYTPNAKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
ID+R+ W+ F +Y+Q +L +I+ GDLNV + IDL NP N K AG++ +ER
Sbjct: 116 RIDYRLQWEADFKEYLQ-KLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSDQEREA 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL+TG D+FR+LYPD EG Y++WS+R +AR N GWRLDY +VS++L I +
Sbjct: 175 FSALLNTGFTDSFRYLYPDREGGYSWWSYRT-NAREKNIGWRLDYVIVSDRLKPRISEAA 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + + L
Sbjct: 234 ICADIMGSDHCPVEMTVDL 252
>gi|373858337|ref|ZP_09601074.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
gi|372451804|gb|EHP25278.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
Length = 252
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 158/258 (61%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACV K ++Y + + D+ +Q+ + QE ++ L + +W
Sbjct: 1 MKLVSWNVNGIRACVGK-GFLDYFYQIDADVFCIQETKLQEGQIS----LELKDHSQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + +K+KPL+V+YGI + GR IT +F+ F + +Y PNS L
Sbjct: 56 YAVKKGYSGTAIFSKKKPLSVQYGIGTTEHDSEGRAITLEFEEFYLVNIYTPNSQRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++R+ W+ + +++Q EL + +I+ GD+NV IDL NP N+K +G+T EER
Sbjct: 116 LNYRVAWEDYLREFLQ-ELDTKKPVILCGDMNVAHHEIDLKNPKSNMKNSGFTPEERGKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G VD FRHL P++E YT+WS+ NK R N GWR+DY LVSE+L +I D +
Sbjct: 175 TELLNNGFVDTFRHLNPEKENVYTWWSYMNK-VRERNIGWRIDYFLVSERLRESIIDTQV 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
SD+ GS HCPV+L + L
Sbjct: 234 HSDIMGSDHCPVLLEIDL 251
>gi|423311909|ref|ZP_17289846.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
gi|392689288|gb|EIY82566.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
Length = 252
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 153/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRAC K V+ D LQ+ + QE ++ F YH +W
Sbjct: 2 LKFISWNVNGLRACYDK-GFVDVFHRLEADFFCLQETKMQEGQLDAKFEG----YHSYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K KPL+V YG+ G+ + GRVIT + + F ITVY PNS +L+
Sbjct: 57 YAEKKGYSGTAIFSKVKPLSVTYGL-GIEEHDHEGRVITLELESFYLITVYTPNSQEELR 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ +L +I+ GDLNV + IDL NP N K AG+T EER
Sbjct: 116 RLDYRMKWEDDFRAYLK-KLEEKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERTK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL++G D FR+ YP++EG Y++WS+R K AR N GWR+DY L S+ L + +K
Sbjct: 175 FTTLLESGFTDTFRYFYPEQEGIYSWWSYRFK-AREKNSGWRIDYFLTSDSLKDRLKGAH 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV L + L
Sbjct: 234 IYTDIFGSDHCPVELTIEL 252
>gi|150005146|ref|YP_001299890.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|294778957|ref|ZP_06744373.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|319642656|ref|ZP_07997302.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
gi|345520248|ref|ZP_08799647.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|149933570|gb|ABR40268.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|254836074|gb|EET16383.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|294447266|gb|EFG15850.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|317385744|gb|EFV66677.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
Length = 252
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 153/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRAC K V+ D LQ+ + QE ++ F YH +W
Sbjct: 2 LKFISWNVNGLRACYDK-GFVDVFHRLEADFFCLQETKMQEGQLDAKFEG----YHSYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K KPL+V YG+ G+ + GRVIT + + F ITVY PNS +L+
Sbjct: 57 YAEKKGYSGTAIFSKVKPLSVTYGL-GIEEHDHEGRVITLELESFYLITVYTPNSQEELR 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ +L +I+ GDLNV + IDL NP N K AG+T EER
Sbjct: 116 RLDYRMKWEDDFRAYLK-KLEEKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL++G D FR+ YP++EG Y++WS+R K AR N GWR+DY L S+ L + +K
Sbjct: 175 FTTLLESGFTDTFRYFYPEQEGIYSWWSYRFK-AREKNSGWRIDYFLTSDSLKDRLKGAH 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV L + L
Sbjct: 234 IYTDIFGSDHCPVELTIEL 252
>gi|304439168|ref|ZP_07399086.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372300|gb|EFM25888.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 254
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 160/258 (62%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K +WNVNG+RA +KK +E E NPDI+ LQ+I+ E ++ + YHM+W
Sbjct: 5 KFVSWNVNGIRAALKK-GFMESFEELNPDIIGLQEIKLSEGQLD----LEIPGYHMYWNY 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+E+PL+V YGI G+ ++ GRVIT ++ + FIT Y PNS L
Sbjct: 60 AEKKGYSGTAVFTREEPLSVSYGI-GIEEHDKEGRVITLEYPEYYFITCYTPNSQRGLAR 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W++ F +Y+ + L +++ GDLNV IDL NP+ N K AG++ EER F
Sbjct: 119 LDYRMEWEEAFLEYL-NRLDEVKPVVLCGDLNVAHNEIDLKNPESNRKNAGFSDEERDKF 177
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL+ G D FR+LYPD+E Y++WS+ + AR N GWR+DY +VS+ L + I + I
Sbjct: 178 TKLLEAGYTDTFRYLYPDKEDEYSWWSYF-RQARDRNIGWRIDYFVVSKVLEDKIVEASI 236
Query: 310 RSDVQGSTHCPVVLRLSL 327
++ GS HCPV + L+L
Sbjct: 237 HQNIMGSDHCPVSVELNL 254
>gi|432942682|ref|XP_004083031.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Oryzias latipes]
Length = 298
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/262 (41%), Positives = 150/262 (57%), Gaps = 19/262 (7%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+++WNV+GLRA VKK L + +C E ++P + H
Sbjct: 53 SANMKITSWNVDGLRAWVKKGG--------------LDETKCAEKDLPAEITSMPEYPHK 98
Query: 129 FWIGSD--KGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGI 185
+W SD +G GV +L+K +PL V YGI + + GRVITA+F F +T YVPN+
Sbjct: 99 YWAVSDDKEGYSGVAMLSKTEPLKVTYGIGKEEHDKEGRVITAEFPTFFLVTAYVPNASR 158
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +D+R WD F Y+ +EL +++ GDLNV Q IDL NP N K AG+T EE
Sbjct: 159 GLVRLDYRKTWDVDFQAYL-TELDVQKPLVLCGDLNVAHQEIDLKNPKGNKKNAGFTPEE 217
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +LL G VD+FR LYP++ AYT+W++ S R N GWRLDY L+S L +
Sbjct: 218 REGFSQLLAAGFVDSFRELYPEQANAYTFWTYMMNS-RAKNVGWRLDYFLLSSSLVPGLC 276
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D IR+ GS HCP+ L L++
Sbjct: 277 DSKIRNKAMGSDHCPITLHLAV 298
>gi|294499447|ref|YP_003563147.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
gi|294349384|gb|ADE69713.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
Length = 253
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 158/257 (61%), Gaps = 8/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACV+K ++Y E N D+ +Q+ + QE ++ L Y+ +W
Sbjct: 1 MKLISWNVNGIRACVRK-GFLDYFQEVNADVFCIQETKLQEGQID----LQLEGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + TK+KPL+V YG+ S GR+IT +F++ + VY PNS L +
Sbjct: 56 YAVKKGYSGTAVFTKQKPLSVSYGVGKESEDEGRIITLEFEQCYVVNVYTPNSKRDLARL 115
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+ R+ W+ Y++ +L S +I+ GDLNV IDL NP N +G+T+EER
Sbjct: 116 EERLQWEDDLLVYLK-KLNSRKAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMT 174
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
LL +G +D FR+LYP++EGAYT+WS+ NK R N GWR+DY +VSE++ N I++ I
Sbjct: 175 TLLASGFLDTFRYLYPNQEGAYTWWSYMNK-VRERNIGWRIDYFIVSERMKNVIQESAIH 233
Query: 311 SDVQGSTHCPVVLRLSL 327
V GS HCPV+L L++
Sbjct: 234 PHVMGSDHCPVMLELNV 250
>gi|257420126|ref|ZP_05597120.1| exonuclease III [Enterococcus faecalis T11]
gi|257161954|gb|EEU91914.1| exonuclease III [Enterococcus faecalis T11]
Length = 251
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 154/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKCISWNVNGLRAVVKKNF-MDVFSELDADFFCLQETKLQAGQID----LELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE+ L+V+YG+ GV +Q GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKEEALSVRYGL-GVEAHDQEGRVITLEYPEFFMVTCYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +EL +I+ GDLNV Q IDL N N K AG+T EER+
Sbjct: 115 RLAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 174 FTELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVSAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 233 IHTDILGSDHCPVEVVLDF 251
>gi|221194898|ref|ZP_03567954.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
gi|221184801|gb|EEE17192.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
Length = 281
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/262 (42%), Positives = 158/262 (60%), Gaps = 9/262 (3%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEVPESFRKSLSHYH 127
T + K ++WNVNGLRA +KK+ I E + DI ALQ+ + QE +V S++
Sbjct: 26 TKEYKFASWNVNGLRAVLKKDPSFTEIFETIDADIFALQETKLQEGQVDLDIP---SYFQ 82
Query: 128 MFWIGSDKGQGGVGLLTKEKPLTV--KYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGI 185
+ KG G + ++E+PL V + G P V++ GRV +F RF F+ VY PNS
Sbjct: 83 TWNYAERKGYSGTAVFSREEPLQVIRQIGSP-VADNEGRVCALEFDRFWFVDVYTPNSKE 141
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
+L +D R++WD+ + D+I +EL + +I GD NV IDL NP N K AG++ EE
Sbjct: 142 QLARLDERLVWDERYRDFI-AELSAQKPLITCGDFNVAHTEIDLKNPSSNHKNAGFSDEE 200
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R +F +LLD G D FR+ +PD GAY++WS+R +AR NN GWR+DY LVS ++A I
Sbjct: 201 RESFTKLLDAGFTDTFRYRHPDVTGAYSWWSYR-FNARKNNAGWRIDYFLVSNRIAQQIT 259
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
I ++V GS HCPV L + L
Sbjct: 260 GAAILNEVYGSDHCPVELTIEL 281
>gi|312381587|gb|EFR27301.1| hypothetical protein AND_06082 [Anopheles darlingi]
Length = 517
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 153/238 (64%), Gaps = 5/238 (2%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG 132
K+S+WNV GLR+ V K +++I E PDI+ LQ+ +C ED++P+ R + YH +W+
Sbjct: 25 KISSWNVAGLRSWVGKGG-LDFIEHEQPDILCLQETKCTEDQLPDEARH-IKGYHPYWLC 82
Query: 133 SDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAID 191
G GV + +++ P+ V YG+ +Q GR++TA++++F + VYVPN+G KL +
Sbjct: 83 KPGGYAGVAIYSRKMPIHVSYGLGDEEQDQDGRLLTAEYEKFYLVCVYVPNAGNKLVTLP 142
Query: 192 FRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRE 251
RM WD+ F+ Y++ EL S +I+ GD+NV + IDLANP N K AG+T EER +
Sbjct: 143 KRMRWDEKFHQYLR-ELDSKKPVILCGDMNVAHEEIDLANPKTNKKNAGFTQEERDGLSK 201
Query: 252 LLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL G VD FR LYPD + AY++W++ AR N GWRLDY +VS++ + + D ++
Sbjct: 202 LLSFGFVDTFRQLYPDRKAAYSFWTYMG-GARAKNVGWRLDYFIVSQRFTDKVTDNVM 258
>gi|451343821|ref|ZP_21912887.1| exodeoxyribonuclease III (xth) [Eggerthia catenaformis OT 569 = DSM
20559]
gi|449337396|gb|EMD16558.1| exodeoxyribonuclease III (xth) [Eggerthia catenaformis OT 569 = DSM
20559]
Length = 251
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/256 (43%), Positives = 155/256 (60%), Gaps = 9/256 (3%)
Query: 74 VSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGS 133
+++WNVNG+RAC+ K + + N DI ALQ+ + Q D++ F + YH F+ +
Sbjct: 3 LASWNVNGIRACLTK-GFEDSFKKINADIFALQETKAQVDQIVLDFPE----YHAFYNSA 57
Query: 134 -DKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAID 191
KG GV +LTK KP V YGI +Q GRV+T +F F F+ Y PNS +L +D
Sbjct: 58 VKKGYSGVAILTKIKPNHVYYGIDIKEHDQEGRVLTLEFDHFYFVGCYTPNSKRELARLD 117
Query: 192 FRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRE 251
+RM W+ F Y+ +L +I+ GDLNV Q IDL NP N K AG++ EER +
Sbjct: 118 YRMKWEDDFLAYLD-KLNKTKPVILCGDLNVAHQEIDLKNPSSNHKNAGFSDEEREKMTQ 176
Query: 252 LLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRS 311
LL G +D FR+ YPD+ AY++WS+ K AR N GWR+DY + SE+L + +KD I S
Sbjct: 177 LLSHGYIDTFRYFYPDQTDAYSWWSYMFK-ARERNAGWRIDYFITSERLKDKLKDAYIYS 235
Query: 312 DVQGSTHCPVVLRLSL 327
D+ GS HCPV L +SL
Sbjct: 236 DILGSDHCPVGLEISL 251
>gi|239624599|ref|ZP_04667630.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520985|gb|EEQ60851.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 251
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 151/257 (58%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
K +WNVNGLRACV K +++ E + D+ +Q+ + QE ++ L YH +W
Sbjct: 2 AKFISWNVNGLRACVGK-GFLDFFKEIDADVFCIQESKLQEGQID----LDLPGYHQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + T+E+PL+V YGI G+ + GRVITA+F + +T Y PNS L
Sbjct: 57 YALKKGYSGTAMFTREEPLSVSYGI-GMEEHDTEGRVITAEFPDYYVVTCYTPNSQDGLA 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ L ++ GDLNV + IDL NP N K AG+T EER
Sbjct: 116 RLDYRMKWEDDFLAYLKG-LEKKKPVVFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL G +D FR+ YPD EG Y++WS+R SAR N GWR+DY VSE L + +
Sbjct: 175 FTDLLSAGFIDTFRYFYPDAEGIYSWWSYRF-SARAKNAGWRIDYFCVSESLKDRLVSAA 233
Query: 309 IRSDVQGSTHCPVVLRL 325
I ++V GS HCPV L +
Sbjct: 234 IHTEVMGSDHCPVELVM 250
>gi|255971866|ref|ZP_05422452.1| exonuclease III [Enterococcus faecalis T1]
gi|255962884|gb|EET95360.1| exonuclease III [Enterococcus faecalis T1]
Length = 257
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/262 (42%), Positives = 156/262 (59%), Gaps = 11/262 (4%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH
Sbjct: 4 VSTMKCISWNVNGLRAVVKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQ 58
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + KE+ L+V+YG+ G+ +Q GRVIT ++ F +T Y PNS
Sbjct: 59 YWNYAEKKGYSGTAIFAKEEALSVRYGL-GIEAHDQEGRVITLEYPEFFMVTCYTPNSQA 117
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
+LK + +RM W+ F Y+ +EL +I+ GDLNV Q+IDL N N K AG+T EE
Sbjct: 118 ELKRLAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEE 176
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R+ F ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 177 RQKFTELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLV 235
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 236 SAKIHTDILGSDHCPVEVVLDF 257
>gi|291543155|emb|CBL16265.1| exodeoxyribonuclease III [Ruminococcus bromii L2-63]
Length = 252
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/258 (43%), Positives = 155/258 (60%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG 132
K+ +WNVNGLRACV K + + + DI LQ+ + QE ++ L YH +W
Sbjct: 3 KLISWNVNGLRACVTKGF-ENFFKDVDADIFCLQETKLQEGQID----LLLEGYHQYWCY 57
Query: 133 SDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+DK G G + TKE+PL V YGI G+ + GRVITA+F +T Y PNS +LK
Sbjct: 58 ADKKGYSGTAMFTKEEPLNVCYGI-GIDEHDHEGRVITAEFDNCFVVTCYTPNSQSELKR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y++ +L +I+ GDLNV + IDL NP N K AG+T EER
Sbjct: 117 LDYRMKWEDDFKAYLK-KLEEKKPVIMCGDLNVAHKEIDLKNPKTNRKNAGFTDEERSKM 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D +R+ YPD EG Y++WS+R K AR N GWR+DY +VS+ L + + I
Sbjct: 176 TALLDDGFIDTYRYFYPDTEGVYSWWSYRFK-AREKNAGWRIDYFIVSKALESKLDGAKI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
+++ GS HCPV L + +
Sbjct: 235 HTEILGSDHCPVELTIDI 252
>gi|420154891|ref|ZP_14661764.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
gi|394760027|gb|EJF42663.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
Length = 252
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/258 (43%), Positives = 158/258 (61%), Gaps = 11/258 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRAC+ K +++ E + DI LQ+ + QE + L Y +W
Sbjct: 1 MKFVSWNVNGLRACLNK-GFLDFFREADADIFCLQETKMQEGQA----ELDLPGYLQYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGI--PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G G + TK++PL+V Y I P + + GR IT +F+ F + VY PNS +L
Sbjct: 56 SAEKKGYSGTAVFTKKEPLSVCYDIRHPDHTGE-GRAITLEFESFYLVNVYTPNSQRELV 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F +Y+ ++L +II GDLNV Q IDL N N+ AG++ EER
Sbjct: 115 RLPYRMEWENAFREYV-TQLDEKKPVIICGDLNVAHQEIDLKNAKSNIGNAGFSYEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL +G +D+FR LYPD GAYT+WS+ K AR NN GWR+DY L+SE+L + D +
Sbjct: 174 LTELLASGFLDSFRELYPDLTGAYTWWSYMFK-ARQNNAGWRIDYFLISERLREKLSDSL 232
Query: 309 IRSDVQGSTHCPVVLRLS 326
I S+VQGS HCPV L L+
Sbjct: 233 IYSEVQGSDHCPVGLILT 250
>gi|291519655|emb|CBK74876.1| exodeoxyribonuclease III [Butyrivibrio fibrisolvens 16/4]
Length = 250
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/255 (42%), Positives = 155/255 (60%), Gaps = 11/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA + K +++ + DI+ LQ+I+ E ++ YH +W
Sbjct: 1 MKFVSWNVNGLRAVMGK-GFMDFFDGIDADIIGLQEIKLSEGQL----EWDKPGYHAYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++P++V YGI G+ + GRVIT +F+ F FIT Y PNS +LK
Sbjct: 56 YAEKKGYSGTAVFTKKEPISVSYGI-GIEEHDHEGRVITLEFEDFYFITCYTPNSQNELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+Q +L +I+ GDLNV + ID+ NP N AG+T EER
Sbjct: 115 RLDYRMTWEDDFRAYLQ-KLNEKKGVILCGDLNVAHEEIDIKNPKTNRHNAGFTDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL G VD+FR+ YPD+ Y++WS+R K AR N GWR+DY +VSE + + +KD
Sbjct: 174 MTELLSAGFVDSFRYFYPDQTDIYSWWSYRFK-AREKNAGWRIDYFIVSEDIKDRMKDSK 232
Query: 309 IRSDVQGSTHCPVVL 323
I +DV GS HCP+ L
Sbjct: 233 IHTDVMGSDHCPIEL 247
>gi|256763359|ref|ZP_05503939.1| exonuclease III [Enterococcus faecalis T3]
gi|256684610|gb|EEU24305.1| exonuclease III [Enterococcus faecalis T3]
Length = 257
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 154/261 (59%), Gaps = 9/261 (3%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH
Sbjct: 4 VSTMKCISWNVNGLRAVVKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQ 58
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIK 186
+W KG G + KE+ L+V+YG+ S +Q GRVIT ++ F +T Y PNS +
Sbjct: 59 YWNYAEKKGYSGTAIFAKEEALSVRYGLGIESHDQEGRVITLEYPEFFMVTCYTPNSQAE 118
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
LK + +RM W+ F Y+ +EL +I+ GDLNV Q IDL N N K AG+T EER
Sbjct: 119 LKRLAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEER 177
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
+ F ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 178 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVS 236
Query: 307 CIIRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 237 AKIHTDILGSDHCPVEVVLDF 257
>gi|282880102|ref|ZP_06288822.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
gi|281305975|gb|EFA98015.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
Length = 249
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 156/256 (60%), Gaps = 10/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRACVKKN E + + D LQ+ + QE ++ F S+++
Sbjct: 1 MKFISWNVNGLRACVKKN-FQESFQQLDADFFCLQETKMQEGQLDLQFPGYTSYWNY--- 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KP+ V YG+ G+ +Q GRVIT + + F ITVYVPNS +LK
Sbjct: 57 AEKKGYSGTAIYTKHKPIHVSYGL-GIEEHDQEGRVITLEMEDFFLITVYVPNSQDELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F YI ++L +II GDLNV + IDL NP N + AG+T EER
Sbjct: 116 LDYRMKWEDDFRAYI-TQLDQIKPVIICGDLNVAHEEIDLKNPKTNKRNAGFTDEERNKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+LYP E+ Y++WS+R + AR N GWR+DY L+SE+L + D I
Sbjct: 175 TRLLDNGFIDTFRYLYP-EQITYSWWSYRFR-AREKNAGWRIDYFLISERLKERLHDAKI 232
Query: 310 RSDVQGSTHCPVVLRL 325
+++ GS HCPV L L
Sbjct: 233 HTEIMGSDHCPVELEL 248
>gi|422419400|ref|ZP_16496355.1| exodeoxyribonuclease III, partial [Listeria seeligeri FSL N1-067]
gi|313632791|gb|EFR99747.1| exodeoxyribonuclease III [Listeria seeligeri FSL N1-067]
Length = 251
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 160/259 (61%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VKK +EY + DI LQ+ + Q ++ L Y +W
Sbjct: 1 MKLISWNVNGLRAAVKK-GFLEYFDSVDADIFCLQETKLQAGQID----LDLPAYKDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G TK++PL+V+YG+ G+ + GRVIT +F++F +TVY PNS +LK
Sbjct: 56 YAVKKGYSGTXXFTKKEPLSVQYGL-GIEEHDTEGRVITLEFEKFFMVTVYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM ++ Y++ +L +++ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTFEDAILAYVK-KLDETKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F L+ G VD+FR+ YPD E AY++WS+R +AR N GWR+DY +VSE+L +N+ D
Sbjct: 174 FTAFLEAGFVDSFRYFYPDLEDAYSWWSYR-MNARARNIGWRIDYFVVSERLKDNLVDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I DV GS HCPV L L++
Sbjct: 233 IHPDVLGSDHCPVELELNI 251
>gi|375091411|ref|ZP_09737704.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
gi|374563511|gb|EHR34824.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
Length = 250
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 159/257 (61%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA + K +EYI +E+PDI+ LQ+I+ + ++ L YH F+
Sbjct: 1 MKLISWNVNGLRAVMNK-GFMEYIEQEDPDIICLQEIKLAKGQL----EVDLPQYHEFYN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+G G + TKE+PL+ YGI G+ ++ GRVIT +++ F +T Y PNS L
Sbjct: 56 YAERRGYSGTAIFTKEEPLSHSYGI-GIEEHDKEGRVITLEYEDFYLVTCYTPNSKRGLL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R +W+ F +Y+ +L +I+ GDLNV + IDLANP N + AG+T EER+
Sbjct: 115 RLDYRQVWEDDFRNYLL-KLNKTKPVILCGDLNVAHKEIDLANPKSNRRNAGFTDEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD G +D FR+ YPD Y++WS+ K AR N GWR+DY +VSE + + D
Sbjct: 174 FTELLDAGFIDTFRYFYPDIPEMYSWWSYITK-ARERNVGWRIDYFVVSEDFEDRLLDAS 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I + +GS HCPVVL L
Sbjct: 233 IHMEQEGSDHCPVVLYL 249
>gi|256961018|ref|ZP_05565189.1| exonuclease III [Enterococcus faecalis Merz96]
gi|293384592|ref|ZP_06630458.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|293386821|ref|ZP_06631392.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|312906418|ref|ZP_07765426.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|312979423|ref|ZP_07791111.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|422701088|ref|ZP_16758929.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
gi|256951514|gb|EEU68146.1| exonuclease III [Enterococcus faecalis Merz96]
gi|291078138|gb|EFE15502.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|291083824|gb|EFE20787.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|310627572|gb|EFQ10855.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|311287794|gb|EFQ66350.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|315170467|gb|EFU14484.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
Length = 251
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 154/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKCISWNVNGLRAVVKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE+ L+V+YG+ GV +Q GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKEEALSVRYGL-GVEAHDQEGRVITLEYPEFFMVTCYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +EL +I+ GDLNV Q IDL N N K AG+T EER+
Sbjct: 115 RLAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 174 FTELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVSAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 233 IHTDILGSDHCPVEVVLDF 251
>gi|430362273|ref|ZP_19427003.1| exonuclease III [Enterococcus faecalis OG1X]
gi|430366851|ref|ZP_19427621.1| exonuclease III [Enterococcus faecalis M7]
gi|429512184|gb|ELA01799.1| exonuclease III [Enterococcus faecalis OG1X]
gi|429516857|gb|ELA06332.1| exonuclease III [Enterococcus faecalis M7]
Length = 271
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 155/261 (59%), Gaps = 11/261 (4%)
Query: 70 TKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMF 129
+ +K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH +
Sbjct: 19 STMKCISWNVNGLRAVVKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQY 73
Query: 130 W-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIK 186
W KG G + KE+ L+V+YG+ G+ +Q GRVIT ++ F +T Y PNS +
Sbjct: 74 WNYAEKKGYSGTAIFAKEEALSVRYGL-GIEAHDQEGRVITLEYPEFFMVTCYTPNSQAE 132
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
LK + +RM W+ F Y+ +EL +I+ GDLNV Q IDL N N K AG+T EER
Sbjct: 133 LKRLAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEER 191
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
+ F ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 192 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVS 250
Query: 307 CIIRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 251 AKIHTDILGSDHCPVEVVLDF 271
>gi|255974862|ref|ZP_05425448.1| exonuclease III [Enterococcus faecalis T2]
gi|255967734|gb|EET98356.1| exonuclease III [Enterococcus faecalis T2]
Length = 257
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/262 (42%), Positives = 155/262 (59%), Gaps = 11/262 (4%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH
Sbjct: 4 VSTMKCISWNVNGLRAVVKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQ 58
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + KE+ L+V+YG+ G+ +Q GRVIT ++ F +T Y PNS
Sbjct: 59 YWNYAEKKGYSGTAIFAKEEALSVRYGL-GIEAHDQEGRVITLEYPEFFMVTCYTPNSQA 117
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
+LK + +RM W+ F Y+ +EL +I+ GDLNV Q IDL N N K AG+T EE
Sbjct: 118 ELKRLAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEE 176
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R+ F ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 177 RQKFTELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLV 235
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 236 SAKIHTDILGSDHCPVEVVLDF 257
>gi|223985143|ref|ZP_03635238.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
gi|223962889|gb|EEF67306.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
Length = 252
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 160/260 (61%), Gaps = 12/260 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC++K +++ E++ DI ALQ+ + Q P L YH +W
Sbjct: 1 MKLISWNVNGLRACIQK-GFMDFFNEQDADIFALQETKLQ----PHQIELELPGYHQYWH 55
Query: 132 GSD-KGQGGVGLLTKEKPLTVKYGI---PGVSNQRGRVITAKFKRFTFITVYVPNSGIKL 187
++ KG G + TK+KPL+V+Y G + GRVIT +F++F F+T YVPNS +L
Sbjct: 56 SAERKGYSGTAVFTKQKPLSVRYDFDEAEGEHPKEGRVITLEFEQFYFVTAYVPNSKEEL 115
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+D+RM W+ ++ ++L ++ +GDLNV ++ IDL NP N G++ +ER+
Sbjct: 116 ARLDYRMQWEDAMARHL-AKLNETKPVVYTGDLNVAVEEIDLKNPKTNHFNPGFSDQERQ 174
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
R+LL G D FR LYP E+ Y++WS+R S R N GWR+DY +VS++L N +KD
Sbjct: 175 KMRDLLSLGFADTFRTLYP-EKVEYSWWSYRFNS-RAKNVGWRIDYFIVSQRLMNQVKDS 232
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
+I D+ GS HCPV + +
Sbjct: 233 VIYGDILGSDHCPVGVEIEF 252
>gi|229549148|ref|ZP_04437873.1| exodeoxyribonuclease [Enterococcus faecalis ATCC 29200]
gi|256957962|ref|ZP_05562133.1| exonuclease III [Enterococcus faecalis DS5]
gi|257084299|ref|ZP_05578660.1| exonuclease III [Enterococcus faecalis Fly1]
gi|257090921|ref|ZP_05585282.1| exonuclease III [Enterococcus faecalis CH188]
gi|307276972|ref|ZP_07558082.1| exodeoxyribonuclease III [Enterococcus faecalis TX2134]
gi|312902560|ref|ZP_07761766.1| exodeoxyribonuclease III [Enterococcus faecalis TX0635]
gi|312951910|ref|ZP_07770798.1| exodeoxyribonuclease III [Enterococcus faecalis TX0102]
gi|384519525|ref|YP_005706830.1| exodeoxyribonuclease III [Enterococcus faecalis 62]
gi|421513270|ref|ZP_15960049.1| Exodeoxyribonuclease III [Enterococcus faecalis ATCC 29212]
gi|422687253|ref|ZP_16745435.1| exodeoxyribonuclease III [Enterococcus faecalis TX0630]
gi|422690983|ref|ZP_16749024.1| exodeoxyribonuclease III [Enterococcus faecalis TX0031]
gi|422710887|ref|ZP_16767822.1| exodeoxyribonuclease III [Enterococcus faecalis TX0027]
gi|422725430|ref|ZP_16781891.1| exodeoxyribonuclease III [Enterococcus faecalis TX0312]
gi|229305702|gb|EEN71698.1| exodeoxyribonuclease [Enterococcus faecalis ATCC 29200]
gi|256948458|gb|EEU65090.1| exonuclease III [Enterococcus faecalis DS5]
gi|256992329|gb|EEU79631.1| exonuclease III [Enterococcus faecalis Fly1]
gi|256999733|gb|EEU86253.1| exonuclease III [Enterococcus faecalis CH188]
gi|306506395|gb|EFM75555.1| exodeoxyribonuclease III [Enterococcus faecalis TX2134]
gi|310630099|gb|EFQ13382.1| exodeoxyribonuclease III [Enterococcus faecalis TX0102]
gi|310634230|gb|EFQ17513.1| exodeoxyribonuclease III [Enterococcus faecalis TX0635]
gi|315035107|gb|EFT47039.1| exodeoxyribonuclease III [Enterococcus faecalis TX0027]
gi|315154300|gb|EFT98316.1| exodeoxyribonuclease III [Enterococcus faecalis TX0031]
gi|315159607|gb|EFU03624.1| exodeoxyribonuclease III [Enterococcus faecalis TX0312]
gi|315579630|gb|EFU91821.1| exodeoxyribonuclease III [Enterococcus faecalis TX0630]
gi|323481658|gb|ADX81097.1| exodeoxyribonuclease III [Enterococcus faecalis 62]
gi|401673644|gb|EJS80023.1| Exodeoxyribonuclease III [Enterococcus faecalis ATCC 29212]
Length = 251
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 155/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKCISWNVNGLRAVVKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE+ L+V+YG+ G+ +Q GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKEEALSVRYGL-GIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +EL +I+ GDLNV Q+IDL N N K AG+T EER+
Sbjct: 115 RLAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 174 FTELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVSAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 233 IHTDILGSDHCPVEVVLDF 251
>gi|29377212|ref|NP_816366.1| exodeoxyribonuclease [Enterococcus faecalis V583]
gi|227554220|ref|ZP_03984267.1| exodeoxyribonuclease [Enterococcus faecalis HH22]
gi|422714823|ref|ZP_16771549.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309A]
gi|422717962|ref|ZP_16774635.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309B]
gi|29344678|gb|AAO82436.1| exodeoxyribonuclease [Enterococcus faecalis V583]
gi|227176667|gb|EEI57639.1| exodeoxyribonuclease [Enterococcus faecalis HH22]
gi|315573773|gb|EFU85964.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309B]
gi|315580287|gb|EFU92478.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309A]
Length = 251
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 155/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKCISWNVNGLRAVVKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQYWS 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE+ L+V+YG+ G+ +Q GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKEEALSVRYGL-GIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +EL +I+ GDLNV Q+IDL N N K AG+T EER+
Sbjct: 115 RLAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 174 FTELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVSAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 233 IHTDILGSDHCPVEVVLDF 251
>gi|256854033|ref|ZP_05559398.1| exodeoxyribonuclease [Enterococcus faecalis T8]
gi|307290261|ref|ZP_07570177.1| exodeoxyribonuclease III [Enterococcus faecalis TX0411]
gi|422684833|ref|ZP_16743058.1| exodeoxyribonuclease III [Enterococcus faecalis TX4000]
gi|256710976|gb|EEU26019.1| exodeoxyribonuclease [Enterococcus faecalis T8]
gi|306498682|gb|EFM68183.1| exodeoxyribonuclease III [Enterococcus faecalis TX0411]
gi|315030444|gb|EFT42376.1| exodeoxyribonuclease III [Enterococcus faecalis TX4000]
Length = 251
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 155/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKCISWNVNGLRAVVKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE+ L+V+YG+ G+ +Q GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKEEALSVRYGL-GIETHDQEGRVITLEYPEFFMVTCYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +EL +I+ GDLNV Q+IDL N N K AG+T EER+
Sbjct: 115 RLAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 174 FTELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVSAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 233 IHTDILGSDHCPVEVVLDF 251
>gi|300860584|ref|ZP_07106671.1| exodeoxyribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|428767881|ref|YP_007153992.1| exodeoxyribonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|300849623|gb|EFK77373.1| exodeoxyribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|427186054|emb|CCO73278.1| exodeoxyribonuclease III [Enterococcus faecalis str. Symbioflor 1]
Length = 251
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 155/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKCISWNVNGLRAVVKKNF-LDVFNELDADFFCLQETKLQAGQID----LELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE+ L+V+YG+ G+ +Q GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKEEALSVRYGL-GIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +EL +I+ GDLNV Q+IDL N N K AG+T EER+
Sbjct: 115 RLAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 174 FTELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVSAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 233 IHTDILGSDHCPVEVVLDF 251
>gi|329120913|ref|ZP_08249545.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
gi|327471372|gb|EGF16823.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
Length = 254
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 155/256 (60%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRAC+KK ++ N D LQ+ + Q P + Y+ +W
Sbjct: 4 LKYISWNVNGLRACIKK-GFLDSFKNLNADCFCLQETKLQ----PHQIELDIPGYYQYWN 58
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG G L TK KP++V YG+ +Q GR+ITA+FK + Y PNS +L
Sbjct: 59 SAIKKGYSGTALFTKIKPISVSYGMNIEEHDQEGRLITAEFKNHFLVVCYTPNSQRQLAR 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F +Y+ +L + +I+ GDLNV + IDLANP N K AG+T +ER+ F
Sbjct: 119 LEYRMKWENDFKNYLL-KLTESKPVILCGDLNVAHKEIDLANPSSNHKNAGFTDDERKKF 177
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL+ G D FR+LYPD++ AY++WS+ KS R N GWR+DY LVS++L N IKD I
Sbjct: 178 STLLENGFTDTFRYLYPDKKDAYSWWSYFAKS-RERNIGWRIDYFLVSDKLKNKIKDAKI 236
Query: 310 RSDVQGSTHCPVVLRL 325
++QGS HCPV L
Sbjct: 237 HPEIQGSDHCPVELTF 252
>gi|227519480|ref|ZP_03949529.1| exodeoxyribonuclease [Enterococcus faecalis TX0104]
gi|422727704|ref|ZP_16784135.1| exodeoxyribonuclease III [Enterococcus faecalis TX0012]
gi|424677217|ref|ZP_18114076.1| exodeoxyribonuclease III [Enterococcus faecalis ERV103]
gi|424679202|ref|ZP_18116030.1| exodeoxyribonuclease III [Enterococcus faecalis ERV116]
gi|424682483|ref|ZP_18119253.1| exodeoxyribonuclease III [Enterococcus faecalis ERV129]
gi|424686042|ref|ZP_18122715.1| exodeoxyribonuclease III [Enterococcus faecalis ERV25]
gi|424689047|ref|ZP_18125641.1| exodeoxyribonuclease III [Enterococcus faecalis ERV31]
gi|424692659|ref|ZP_18129142.1| exodeoxyribonuclease III [Enterococcus faecalis ERV37]
gi|424695850|ref|ZP_18132222.1| exodeoxyribonuclease III [Enterococcus faecalis ERV41]
gi|424699041|ref|ZP_18135281.1| exodeoxyribonuclease III [Enterococcus faecalis ERV62]
gi|424702698|ref|ZP_18138845.1| exodeoxyribonuclease III [Enterococcus faecalis ERV63]
gi|424705840|ref|ZP_18141862.1| exodeoxyribonuclease III [Enterococcus faecalis ERV65]
gi|424716100|ref|ZP_18145417.1| exodeoxyribonuclease III [Enterococcus faecalis ERV68]
gi|424719240|ref|ZP_18148416.1| exodeoxyribonuclease III [Enterococcus faecalis ERV72]
gi|424724426|ref|ZP_18153372.1| exodeoxyribonuclease III [Enterococcus faecalis ERV73]
gi|424726233|ref|ZP_18154907.1| exodeoxyribonuclease III [Enterococcus faecalis ERV81]
gi|424734642|ref|ZP_18163137.1| exodeoxyribonuclease III [Enterococcus faecalis ERV85]
gi|424746779|ref|ZP_18175000.1| exodeoxyribonuclease III [Enterococcus faecalis ERV93]
gi|227073092|gb|EEI11055.1| exodeoxyribonuclease [Enterococcus faecalis TX0104]
gi|315151770|gb|EFT95786.1| exodeoxyribonuclease III [Enterococcus faecalis TX0012]
gi|402355247|gb|EJU90024.1| exodeoxyribonuclease III [Enterococcus faecalis ERV103]
gi|402357580|gb|EJU92285.1| exodeoxyribonuclease III [Enterococcus faecalis ERV116]
gi|402367516|gb|EJV01856.1| exodeoxyribonuclease III [Enterococcus faecalis ERV129]
gi|402368116|gb|EJV02441.1| exodeoxyribonuclease III [Enterococcus faecalis ERV25]
gi|402369475|gb|EJV03753.1| exodeoxyribonuclease III [Enterococcus faecalis ERV31]
gi|402377670|gb|EJV11567.1| exodeoxyribonuclease III [Enterococcus faecalis ERV37]
gi|402377770|gb|EJV11662.1| exodeoxyribonuclease III [Enterococcus faecalis ERV62]
gi|402379084|gb|EJV12904.1| exodeoxyribonuclease III [Enterococcus faecalis ERV41]
gi|402386727|gb|EJV20225.1| exodeoxyribonuclease III [Enterococcus faecalis ERV63]
gi|402388863|gb|EJV22288.1| exodeoxyribonuclease III [Enterococcus faecalis ERV68]
gi|402389270|gb|EJV22670.1| exodeoxyribonuclease III [Enterococcus faecalis ERV65]
gi|402395163|gb|EJV28284.1| exodeoxyribonuclease III [Enterococcus faecalis ERV73]
gi|402396815|gb|EJV29860.1| exodeoxyribonuclease III [Enterococcus faecalis ERV72]
gi|402400257|gb|EJV33096.1| exodeoxyribonuclease III [Enterococcus faecalis ERV81]
gi|402406913|gb|EJV39456.1| exodeoxyribonuclease III [Enterococcus faecalis ERV85]
gi|402409191|gb|EJV41626.1| exodeoxyribonuclease III [Enterococcus faecalis ERV93]
Length = 251
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 155/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKCISWNVNGLRAVVKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE+ L+V+YG+ G+ +Q GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKEEALSVRYGL-GIEAHDQEGRVITLEYPEFFIVTCYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +EL +I+ GDLNV Q+IDL N N K AG+T EER+
Sbjct: 115 RLAYRMTWEDAFSAYL-NELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 174 FTELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVSAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 233 IHTDILGSDHCPVEVVLDF 251
>gi|158321340|ref|YP_001513847.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
gi|158141539|gb|ABW19851.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
Length = 252
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 154/258 (59%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNG+RACV K ++Y E + DI +Q+ + Q ++ L YH +W
Sbjct: 3 KLISWNVNGIRACVTK-GFLDYFKEVDADIFCIQESKLQAGQID----LELEGYHQYWNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+P++V YGI G+ ++ GRVIT +F + +TVY PNS KL
Sbjct: 58 AEKKGYSGTAIFTKEEPISVFYGI-GIEEHDKEGRVITLEFGDYYMVTVYTPNSQQKLAR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y+ + L II+ GDLNV IDL NP N K AG++ EER F
Sbjct: 117 LDYRMTWEDCFRSYLNN-LDKQKPIIVCGDLNVAHNEIDLKNPKSNRKNAGFSDEERAKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
E L G +D +R+ YPD EGAYT+WS+ +AR NN GWR+DY VSE+L + + I
Sbjct: 176 TEFLGNGYIDTYRYFYPDREGAYTWWSYM-FNARANNAGWRIDYFCVSERLQDKLVSADI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
+ GS HCPV L +++
Sbjct: 235 HDHILGSDHCPVELVINI 252
>gi|422694022|ref|ZP_16752027.1| exodeoxyribonuclease III [Enterococcus faecalis TX4244]
gi|315148697|gb|EFT92713.1| exodeoxyribonuclease III [Enterococcus faecalis TX4244]
Length = 251
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/258 (43%), Positives = 153/258 (59%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKCISWNVNGLRAVVKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + KE+ L+V+YG+ S +Q GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKEEALSVRYGLGIESHDQEGRVITLEYPEFFMVTCYTPNSQAELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F Y+ +EL +I+ GDLNV Q IDL N N K AG+T EER+ F
Sbjct: 116 LAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L + I
Sbjct: 175 TELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVSAKI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
+D+ GS HCPV + L
Sbjct: 234 HTDILGSDHCPVEVVLDF 251
>gi|417838206|ref|ZP_12484444.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
gi|338761749|gb|EGP13018.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
Length = 254
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 156/259 (60%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA ++ + V + + DI +Q R + +EV + L Y+ +W
Sbjct: 1 MKFMSWNVNGLRAALR-HGFVNTFTDLDADIFGIQDTRVEPNEV----KIDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVK--YGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKEKP+TV +G+P V + GR IT +F F FI V VP SG KL+
Sbjct: 56 YAERKGYAGTAVFTKEKPITVANGFGVPEVDGE-GRSITLEFSNFYFINVQVPFSGEKLQ 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+DFR +W Q F +Y+ ++L +II GD++V + IDLA PD N G+T ER+
Sbjct: 115 RLDFRELWAQTFRNYV-TKLMQYKPVIIGGDMSVAHERIDLAEPDDNHHRPGFTGIERKE 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G +D FR+ +PDE YTYWS+R+K AR N GWRLDY LVS L + + +
Sbjct: 174 FSELLNAGFIDTFRYFHPDE-AKYTYWSYRDKEARAENLGWRLDYFLVSNNLEDKLTNAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S++ GS HCP+ L + +
Sbjct: 233 ILSNIMGSDHCPIELDVDI 251
>gi|42519716|ref|NP_965646.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
gi|41584005|gb|AAS09612.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
Length = 261
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 156/259 (60%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA ++ + V + + DI +Q R + +EV + L Y+ +W
Sbjct: 8 MKFMSWNVNGLRAALR-HGFVNTFTDLDADIFGIQDTRVEPNEV----KIDLPGYYQYWN 62
Query: 131 IGSDKGQGGVGLLTKEKPLTVK--YGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKEKP+TV +G+P V + GR IT +F F FI V VP SG KL+
Sbjct: 63 YAERKGYAGTAVFTKEKPITVANGFGVPEVDGE-GRSITLEFSNFYFINVQVPFSGEKLQ 121
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+DFR +W Q F +Y+ ++L +II GD++V + IDLA PD N G+T ER+
Sbjct: 122 RLDFRELWAQTFRNYV-TKLMQYKPVIIGGDMSVAHERIDLAEPDDNHHRPGFTGIERKE 180
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G +D FR+ +PDE YTYWS+R+K AR N GWRLDY LVS L + + +
Sbjct: 181 FSELLNAGFIDTFRYFHPDE-AKYTYWSYRDKEARAENLGWRLDYFLVSNNLEDRLTNAK 239
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S++ GS HCP+ L + +
Sbjct: 240 ILSNIMGSDHCPIELDVDI 258
>gi|237733965|ref|ZP_04564446.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229383046|gb|EEO33137.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 251
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 158/258 (61%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RAC+ K + + E DI +Q+ + QE ++ + +Y
Sbjct: 1 MKLVSWNVNGIRACITK-GFYDVLKESKADIFCVQETKMQEGQIE---LEKHGYYTYMNS 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + +KEKPL YGI G+ + GRV+T ++++F + Y PNS +LK
Sbjct: 57 AEKKGYSGTLVFSKEKPLNYSYGI-GIEEHDHEGRVVTLEYEKFYLVNCYTPNSQNELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W++ F Y++S L + +I+ GDLNV Q IDL NP N K AG++ EER
Sbjct: 116 LDYRMHWEEDFLAYLKS-LEKSKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL+ G +D +R+LYPD+EG Y++WS+R +AR NN GWR+DY +VS+ L IK+ I
Sbjct: 175 TNLLENGFIDTYRYLYPDQEGVYSWWSYR-FNARKNNAGWRIDYFIVSDCLKEGIKEAFI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
+D+ GS HCPV L + L
Sbjct: 234 CTDILGSDHCPVGLEIDL 251
>gi|229544881|ref|ZP_04433606.1| exodeoxyribonuclease [Enterococcus faecalis TX1322]
gi|256963841|ref|ZP_05568012.1| exonuclease III [Enterococcus faecalis HIP11704]
gi|257081702|ref|ZP_05576063.1| exonuclease III [Enterococcus faecalis E1Sol]
gi|257087702|ref|ZP_05582063.1| exonuclease III [Enterococcus faecalis D6]
gi|257416904|ref|ZP_05593898.1| exonuclease III [Enterococcus faecalis ARO1/DG]
gi|257421653|ref|ZP_05598643.1| exodeoxyribonuclease [Enterococcus faecalis X98]
gi|307271787|ref|ZP_07553058.1| exodeoxyribonuclease III [Enterococcus faecalis TX0855]
gi|307278718|ref|ZP_07559785.1| exodeoxyribonuclease III [Enterococcus faecalis TX0860]
gi|307288645|ref|ZP_07568626.1| exodeoxyribonuclease III [Enterococcus faecalis TX0109]
gi|384514063|ref|YP_005709156.1| exodeoxyribonuclease III [Enterococcus faecalis OG1RF]
gi|422703204|ref|ZP_16761029.1| exodeoxyribonuclease III [Enterococcus faecalis TX1302]
gi|422707239|ref|ZP_16764936.1| exodeoxyribonuclease III [Enterococcus faecalis TX0043]
gi|422720136|ref|ZP_16776759.1| exodeoxyribonuclease III [Enterococcus faecalis TX0017]
gi|422724491|ref|ZP_16780967.1| exodeoxyribonuclease III [Enterococcus faecalis TX2137]
gi|422734487|ref|ZP_16790776.1| exodeoxyribonuclease III [Enterococcus faecalis TX1341]
gi|422741447|ref|ZP_16795472.1| exodeoxyribonuclease III [Enterococcus faecalis TX2141]
gi|424672083|ref|ZP_18109064.1| exodeoxyribonuclease III [Enterococcus faecalis 599]
gi|229309982|gb|EEN75969.1| exodeoxyribonuclease [Enterococcus faecalis TX1322]
gi|256954337|gb|EEU70969.1| exonuclease III [Enterococcus faecalis HIP11704]
gi|256989732|gb|EEU77034.1| exonuclease III [Enterococcus faecalis E1Sol]
gi|256995732|gb|EEU83034.1| exonuclease III [Enterococcus faecalis D6]
gi|257158732|gb|EEU88692.1| exonuclease III [Enterococcus faecalis ARO1/DG]
gi|257163477|gb|EEU93437.1| exodeoxyribonuclease [Enterococcus faecalis X98]
gi|295113675|emb|CBL32312.1| exodeoxyribonuclease III [Enterococcus sp. 7L76]
gi|306500399|gb|EFM69735.1| exodeoxyribonuclease III [Enterococcus faecalis TX0109]
gi|306504579|gb|EFM73782.1| exodeoxyribonuclease III [Enterococcus faecalis TX0860]
gi|306511665|gb|EFM80664.1| exodeoxyribonuclease III [Enterococcus faecalis TX0855]
gi|315025498|gb|EFT37430.1| exodeoxyribonuclease III [Enterococcus faecalis TX2137]
gi|315032586|gb|EFT44518.1| exodeoxyribonuclease III [Enterococcus faecalis TX0017]
gi|315143871|gb|EFT87887.1| exodeoxyribonuclease III [Enterococcus faecalis TX2141]
gi|315155597|gb|EFT99613.1| exodeoxyribonuclease III [Enterococcus faecalis TX0043]
gi|315165304|gb|EFU09321.1| exodeoxyribonuclease III [Enterococcus faecalis TX1302]
gi|315168718|gb|EFU12735.1| exodeoxyribonuclease III [Enterococcus faecalis TX1341]
gi|327535952|gb|AEA94786.1| exodeoxyribonuclease III [Enterococcus faecalis OG1RF]
gi|402357128|gb|EJU91842.1| exodeoxyribonuclease III [Enterococcus faecalis 599]
Length = 251
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 154/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKCISWNVNGLRAVVKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE+ L+V+YG+ G+ +Q GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKEEALSVRYGL-GIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +EL +I+ GDLNV Q IDL N N K AG+T EER+
Sbjct: 115 RLAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 174 FTELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVSAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 233 IHTDILGSDHCPVEVVLDF 251
>gi|337746485|ref|YP_004640647.1| ExoA protein [Paenibacillus mucilaginosus KNP414]
gi|336297674|gb|AEI40777.1| ExoA [Paenibacillus mucilaginosus KNP414]
Length = 259
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 150/256 (58%), Gaps = 8/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K EY + + DI +Q+ + QE ++ + YH +W
Sbjct: 1 MKLVSWNVNGLRACVNKGFS-EYFAQTDADIFCVQETKLQEGQIALDY----PDYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + TK KPL+V+YG+ S GR+IT +F F +TVY PN+ L +
Sbjct: 56 YAEKKGYSGTAVFTKVKPLSVRYGLEEDSEPEGRIITLEFDGFYLVTVYTPNAKRDLSRL 115
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+R+ W+ F YI L + +I+ GDLNV + IDL N N +G+T EER+
Sbjct: 116 DYRLEWEDRFRRYIAG-LDAVKPVILCGDLNVAHEEIDLKNAKGNRGNSGFTAEERQKMT 174
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+LL G +D FRH YP++ AYT+WS K R N GWR+DY L S +LA +++D I
Sbjct: 175 DLLGAGFIDTFRHFYPEQTDAYTWWSNMPK-VRERNVGWRIDYFLASARLAPSLQDAQIH 233
Query: 311 SDVQGSTHCPVVLRLS 326
+ V GS HCPVVL L+
Sbjct: 234 AHVLGSDHCPVVLTLA 249
>gi|449494709|ref|XP_004159624.1| PREDICTED: LOW QUALITY PROTEIN: apurinic endonuclease-redox
protein-like [Cucumis sativus]
Length = 501
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 161/266 (60%), Gaps = 11/266 (4%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYH- 127
T VK+ +WNVNGLRA +K ++ VE E+ D++ LQ+ + QE ++ + + YH
Sbjct: 240 TKSVKILSWNVNGLRALLKGSSAVELAEREDFDVLCLQETKLQEKDILNITKSLVDGYHY 299
Query: 128 MFWIGSDK--GQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYVPNS 183
+W S G G ++++ KP++V+YG+ G+S GRV+ +F F + VYVPNS
Sbjct: 300 TYWTCSVSKLGYSGTAIISRIKPISVRYGL-GISEHDGEGRVVMVEFDSFXLLNVYVPNS 358
Query: 184 GIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYT 242
G LK + +R+ WD +YI+ EL + +I++GDLN Q IDL NP N K+AG+T
Sbjct: 359 GDGLKRLSYRITQWDPSLSNYIK-ELEKSKPVILTGDLNCAHQEIDLYNPAGNRKSAGFT 417
Query: 243 VEERRNFR-ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLA 301
EER++F L G VD FR +PD G YTYW +R+ R NKGWRLDY LVSE++A
Sbjct: 418 NEERQSFETNFLQKGFVDTFRQKHPDVVG-YTYWGYRH-GGRKTNKGWRLDYFLVSERVA 475
Query: 302 NNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ D I DV GS HCP+ L L L
Sbjct: 476 EKVHDSYILPDVGGSDHCPIGLVLKL 501
>gi|422696461|ref|ZP_16754419.1| exodeoxyribonuclease III [Enterococcus faecalis TX1346]
gi|315174931|gb|EFU18948.1| exodeoxyribonuclease III [Enterococcus faecalis TX1346]
Length = 251
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 155/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKCISWNVNGLRAVVKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G ++ KE+ L+V+YG+ G+ +Q GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIVAKEEALSVRYGL-GIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +EL +I+ GDLNV Q IDL N N K AG+T EER+
Sbjct: 115 RLAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 174 FTELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVSAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 233 IHTDILGSDHCPVEVVLDF 251
>gi|167748893|ref|ZP_02421020.1| hypothetical protein ANACAC_03667 [Anaerostipes caccae DSM 14662]
gi|317470265|ref|ZP_07929659.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
gi|167651863|gb|EDR95992.1| exodeoxyribonuclease III [Anaerostipes caccae DSM 14662]
gi|316902238|gb|EFV24158.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
Length = 251
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 157/257 (61%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+++ +WNVNGLRACVKK ++ + + + DI +Q+ + QE ++ L Y+ +W
Sbjct: 2 IQLVSWNVNGLRACVKK-GFLDVMEQLDADIFCIQETKLQEGQID----LELPDYYQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK KPL+VK GI GV + GRVIT +F + +T Y PNS +L
Sbjct: 57 YAEKKGYSGTAVFTKIKPLSVKNGI-GVDEFDHEGRVITLEFDDYFLVTCYTPNSQSELA 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+++F +Y+ +L + +I+ GDLNV IDL NP N K AG+T EER
Sbjct: 116 RLSYRMDWEENFREYLL-KLEEDKPVILCGDLNVAHTEIDLKNPKTNRKNAGFTDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL+ G +D FRH YPD AY++WS+R + AR N GWR+DY VSE L + + +
Sbjct: 175 FTKLLEAGFIDTFRHFYPDVTEAYSWWSYRFR-AREKNAGWRIDYFCVSEGLEERLAEAV 233
Query: 309 IRSDVQGSTHCPVVLRL 325
I +D+ GS HCPV L L
Sbjct: 234 IHTDIYGSDHCPVGLYL 250
>gi|379720396|ref|YP_005312527.1| ExoA protein [Paenibacillus mucilaginosus 3016]
gi|386722997|ref|YP_006189323.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
gi|378569068|gb|AFC29378.1| ExoA [Paenibacillus mucilaginosus 3016]
gi|384090122|gb|AFH61558.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
Length = 259
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 150/256 (58%), Gaps = 8/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K EY + + DI +Q+ + QE ++ + YH +W
Sbjct: 1 MKLVSWNVNGLRACVNKGFS-EYFAQTDADIFCVQETKLQEGQIALDY----PDYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + TK KPL+V+YG+ S GR+IT +F F +TVY PN+ L +
Sbjct: 56 YAEKKGYSGTAVFTKVKPLSVRYGLEEDSEPEGRIITLEFDGFYLVTVYTPNAKRDLSRL 115
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+R+ W+ F YI L + +I+ GDLNV + IDL N N +G+T EER+
Sbjct: 116 DYRLEWEDRFRRYIAG-LDAVKPVILCGDLNVAHEEIDLKNAKGNRGNSGFTAEERQKMT 174
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+LL G +D FRH YP++ AYT+WS K R N GWR+DY L S +LA +++D I
Sbjct: 175 DLLGAGFIDTFRHFYPEQTDAYTWWSNMPK-VRERNVGWRIDYFLASARLAPSLQDAQIH 233
Query: 311 SDVQGSTHCPVVLRLS 326
+ V GS HCPVVL L+
Sbjct: 234 AHVLGSDHCPVVLTLA 249
>gi|410456343|ref|ZP_11310205.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
gi|409928167|gb|EKN65287.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
Length = 250
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 154/256 (60%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACVKK ++Y E + DI +Q+ + QE ++ L YH +W
Sbjct: 1 MKLVSWNVNGLRACVKK-GFLDYFQEVDADIFCVQETKLQEGQIS----LDLDGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGI-PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK +P++V+YG+ S + GR++T +F F + +Y PNS L
Sbjct: 56 YAIKKGYSGTAVFTKIEPISVRYGVGTDESEEEGRILTLEFDDFFLVNIYTPNSQRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
I +R+ W+ ++++ EL +I+ GDLNV Q IDL N NV +G+T EER
Sbjct: 116 IGYRLEWESRILEHLK-ELDKLKPVILCGDLNVAHQEIDLRNSKSNVGNSGFTDEERGKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL G VD++RH YPD+EGAYT+WS+ K R N GWR+DY +VSE+L N+K I
Sbjct: 175 TSLLSAGFVDSYRHFYPDQEGAYTWWSYMMK-VRERNIGWRIDYFIVSEKLRENLKSADI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+V GS HCP+VL +
Sbjct: 234 HCNVMGSDHCPIVLEV 249
>gi|365832959|ref|ZP_09374485.1| exodeoxyribonuclease III (xth) [Coprobacillus sp. 3_3_56FAA]
gi|374627690|ref|ZP_09700093.1| exodeoxyribonuclease III (xth) [Coprobacillus sp. 8_2_54BFAA]
gi|365259792|gb|EHM89775.1| exodeoxyribonuclease III (xth) [Coprobacillus sp. 3_3_56FAA]
gi|373913138|gb|EHQ44980.1| exodeoxyribonuclease III (xth) [Coprobacillus sp. 8_2_54BFAA]
Length = 251
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 157/258 (60%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RAC+ K + + E DI +Q+ + QE ++ + +Y
Sbjct: 1 MKLVSWNVNGIRACITK-GFYDVLKESKADIFCVQETKMQEGQIE---LEKHGYYTYMNS 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + +KEKPL YGI G+ + GRV+T ++++F + Y PNS +LK
Sbjct: 57 AEKKGYSGTLVFSKEKPLNYSYGI-GIEEHDHEGRVVTLEYEKFYLVNCYTPNSQNELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y++S L + +I+ GDLNV Q IDL NP N K AG++ EER
Sbjct: 116 LDYRMHWEDDFLAYLKS-LEKSKPVILCGDLNVAYQEIDLKNPKTNRKNAGFSDEERAKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL+ G +D +R+LYPD+EG Y++WS+R +AR NN GWR+DY +VS+ L IK+ I
Sbjct: 175 TNLLENGFIDTYRYLYPDQEGVYSWWSYR-FNARKNNAGWRIDYFIVSDCLKEGIKEAFI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
+D+ GS HCPV L + L
Sbjct: 234 CTDILGSDHCPVGLEIDL 251
>gi|317496610|ref|ZP_07954957.1| exodeoxyribonuclease III [Gemella morbillorum M424]
gi|316913275|gb|EFV34774.1| exodeoxyribonuclease III [Gemella morbillorum M424]
Length = 254
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 153/257 (59%), Gaps = 9/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K ++NVNGLRA V KN E + + D LQ+ + QE ++ F +Y F
Sbjct: 1 MKCISFNVNGLRAIVNKN-FEEDFKKLDADFFCLQETKMQEGQLDLQFD---GYYSYFNY 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KPL V YGI G+ + GRVIT ++ +F FITVY PNSG +LK
Sbjct: 57 AERKGYSGTAIYTKHKPLNVNYGI-GIDEHDTEGRVITLEYDKFFFITVYTPNSGSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W++ F +Y+ EL +++ GDLNV IDL NP N K AG+T EER F
Sbjct: 116 LDYRMTWEEDFKNYLL-ELNKTKGVVVCGDLNVAHTEIDLKNPKSNTKNAGFTPEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LLD G +D FR+ P+ GAY++WS+R +AR NN GWR+DY L S L + I
Sbjct: 175 TKLLDAGFIDTFRYFNPELTGAYSWWSYR-FNARKNNAGWRIDYFLTSRDLEKYLVSAKI 233
Query: 310 RSDVQGSTHCPVVLRLS 326
+D+ GS HCPV + L+
Sbjct: 234 HNDILGSDHCPVEVVLN 250
>gi|329769257|ref|ZP_08260674.1| exodeoxyribonuclease [Gemella sanguinis M325]
gi|328839251|gb|EGF88834.1| exodeoxyribonuclease [Gemella sanguinis M325]
Length = 254
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/256 (44%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K ++NVNGLRA V KN E + + D LQ+ + Q ++ F +Y F
Sbjct: 1 MKCISFNVNGLRAIVGKN-FEEDFKKLDADFFCLQETKMQAGQLDLQFD---GYYSYFNY 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KPL V YGI G+ + GRVIT ++ F FITVY PNSG +LK
Sbjct: 57 AERKGYSGTAIYTKYKPLNVTYGI-GIEEHDTEGRVITLEYDNFFFITVYTPNSGSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F DY+ + L + +I+ GDLNV IDL NP NVK AG+T EER F
Sbjct: 116 LEYRMSWEDDFKDYLLT-LNKDKGVIVCGDLNVAHTEIDLKNPKTNVKNAGFTPEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LLD G +D FR+ PD GAY++WS+R +AR NN GWR+DY LVS+ L + I
Sbjct: 175 TKLLDAGFIDTFRYFNPDLTGAYSWWSYR-FNARKNNSGWRIDYFLVSKDLKKYLVSAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HNDIFGSDHCPVELVL 249
>gi|255655350|ref|ZP_05400759.1| putative exodeoxyribonuclease [Clostridium difficile QCD-23m63]
gi|296451338|ref|ZP_06893076.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
gi|296259754|gb|EFH06611.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
Length = 250
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 160/256 (62%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
++ +WNVNG+RAC K +++ E + D+ LQ+ + QE ++ L Y +W
Sbjct: 1 MRFISWNVNGIRACAGK-GFLDFFKEVDADVFCLQETKLQEGQI----ELDLPGYFQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL V YGI ++ GRVIT +F+ F F+TVY PNS +LK
Sbjct: 56 YAERKGYSGTAIFTKKEPLKVMYGINIEEHDKEGRVITLEFEDFYFVTVYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++R W+ F DY+ ++L ++ +I+ GD+NV + IDL NP N+K AG+T EER F
Sbjct: 116 LEYRTRWEDDFIDYL-TKLDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LLD+G +D +R+ PD+EG Y++WS+R +AR NN GWR+DY S++L + + I
Sbjct: 175 SKLLDSGFIDTYRYFNPDKEGVYSWWSYRF-NARKNNAGWRIDYFCASKKLEDRLISADI 233
Query: 310 RSDVQGSTHCPVVLRL 325
++V GS HCPV L +
Sbjct: 234 HTEVLGSDHCPVELEI 249
>gi|256616763|ref|ZP_05473609.1| exonuclease III [Enterococcus faecalis ATCC 4200]
gi|256596290|gb|EEU15466.1| exonuclease III [Enterococcus faecalis ATCC 4200]
Length = 251
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 154/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WN+NGLRA VKKN ++ E + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKCISWNINGLRAVVKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE+ L+V+YG+ G+ +Q GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKEEALSVRYGL-GIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +EL +I+ GDLNV Q IDL N N K AG+T EER+
Sbjct: 115 RLAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 174 FTELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVSAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 233 IHTDILGSDHCPVEVVLDF 251
>gi|125972979|ref|YP_001036889.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|256004776|ref|ZP_05429751.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|385779105|ref|YP_005688270.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|419721683|ref|ZP_14248840.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
gi|419725225|ref|ZP_14252277.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|125713204|gb|ABN51696.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|255991226|gb|EEU01333.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|316940785|gb|ADU74819.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|380771412|gb|EIC05280.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|380782260|gb|EIC11901.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
Length = 251
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 156/257 (60%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
K+ +WNVNGLRAC+ K ++Y + + DI +Q+ + Q P L YH +W
Sbjct: 2 TKLISWNVNGLRACINK-GFLDYFKKADADIFCIQESKVQ----PGQIELELDGYHQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + T+ KPL V+ GI G+ ++ GRVIT +F + + VY PN+ +L+
Sbjct: 57 YAERKGYSGTAVFTRIKPLCVQNGI-GIDEHDREGRVITLEFDNYYLVNVYTPNAKKELE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F +Y+ L++ +I+ GD+NV + IDL NP+ N ++AG+T EER
Sbjct: 116 RLDYRMKWEDDFRNYLVG-LKAKKPVIVCGDMNVAHKEIDLKNPESNRRSAGFTDEERAK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G +D FR YPD+ GAYT+WS+ +AR N GWR+DY VSE+L + +
Sbjct: 175 FTELLNAGFIDTFRFFYPDKTGAYTWWSYM-FNARARNAGWRIDYFCVSEELKDRLVSAS 233
Query: 309 IRSDVQGSTHCPVVLRL 325
I DV GS HCPV L++
Sbjct: 234 IHDDVMGSDHCPVELQI 250
>gi|308175792|ref|YP_003922497.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|384161680|ref|YP_005543753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|384166602|ref|YP_005547981.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|384170793|ref|YP_005552171.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
gi|307608656|emb|CBI45027.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|328555768|gb|AEB26260.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|328914157|gb|AEB65753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|341830072|gb|AEK91323.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
Length = 252
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 114/265 (43%), Positives = 161/265 (60%), Gaps = 22/265 (8%)
Query: 72 VKVSTWNVNGLRACVKK---NACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSH 125
+K+ +WNVNGLRA +KK N C++ E DI+ LQ+ + Q+ +V PE
Sbjct: 1 MKLISWNVNGLRAVMKKIDINTCLQ---ETKADILCLQETKVQDGQVSLQPEG------- 50
Query: 126 YHMFW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVSN--QRGRVITAKFKRFTFITVYVPN 182
YH +W KG G + +K KPL V YG+ G+ + Q GRVIT +F+ + Y PN
Sbjct: 51 YHDYWNYAVKKGYSGTAVFSKVKPLQVSYGL-GIDDHDQEGRVITLEFENVFVVNCYTPN 109
Query: 183 SGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYT 242
+ L+ ID+R+ W+ F DY+Q +L +I+ GDLNV + IDL NP N K AG++
Sbjct: 110 AKRGLERIDYRLQWEADFKDYLQ-KLDQKKPVILCGDLNVAHREIDLKNPKANRKNAGFS 168
Query: 243 VEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLAN 302
+ER F LL+ G D+FR+LYPD+EGAY++WS+R +AR N GWRLDY +VS++L
Sbjct: 169 DQEREAFSVLLNAGFTDSFRYLYPDQEGAYSWWSYRT-NAREKNIGWRLDYVIVSDRLKQ 227
Query: 303 NIKDCIIRSDVQGSTHCPVVLRLSL 327
I I +D+ GS HCPV + L L
Sbjct: 228 RITQAAICADIMGSDHCPVEMTLDL 252
>gi|323483337|ref|ZP_08088727.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323691163|ref|ZP_08105441.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|355627198|ref|ZP_09049134.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
gi|323403435|gb|EGA95743.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323504773|gb|EGB20557.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|354820443|gb|EHF04859.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
Length = 251
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 155/254 (61%), Gaps = 11/254 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRACV K ++ E + DI +Q+ + Q ++ L Y+ +W
Sbjct: 3 KLISWNVNGLRACVGK-GFLDIFKELDADIFCIQESKLQGGQID----LELDGYYQYWSY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G L TKE+PL+V YG+ G+ + GRVITA+F + IT Y PNS L
Sbjct: 58 AEKKGYSGTALFTKEEPLSVTYGL-GIEAHDHEGRVITAEFPDYYVITCYTPNSQDGLAR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F Y++ +L + +I GDLNV + IDL NP N K AG+T EER F
Sbjct: 117 LPYRMQWEDDFLSYLK-KLEEHKPVIFCGDLNVAHREIDLKNPKSNRKNAGFTDEERGKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL++G +D +RH YPD+EG Y++WS+R K AR N GWR+DY VS+ L + ++ +I
Sbjct: 176 TQLLESGFIDTYRHFYPDQEGIYSWWSYRFK-AREKNAGWRIDYFCVSKALEDRLESAMI 234
Query: 310 RSDVQGSTHCPVVL 323
+++ GS HCPV L
Sbjct: 235 HTEIMGSDHCPVEL 248
>gi|313892072|ref|ZP_07825670.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
gi|313119524|gb|EFR42718.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
Length = 254
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 156/256 (60%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRAC+KK ++ N D LQ+ + Q P ++ Y+ +W
Sbjct: 4 LKYISWNVNGLRACIKK-GFLDSFKNLNADCFCLQETKLQ----PHQIELNIPGYYQYWN 58
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG G L TK KP++V YG+ +Q GR+ITA+F+ + Y PNS +L
Sbjct: 59 SAIKKGYSGTALFTKIKPISVSYGMNIEEHDQEGRLITAEFENHFLVVCYTPNSQRQLAR 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F +Y+ +L + +I+ GDLNV + IDLANP N K AG+T +ER+ F
Sbjct: 119 LEYRMKWENDFKNYLL-KLTESKPVILCGDLNVAHKEIDLANPSSNHKNAGFTDDERKKF 177
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL+ G D FR+LYPD++ AY++WS+ KS R N GWR+DY LVS++L N IKD I
Sbjct: 178 STLLENGFTDTFRYLYPDKKDAYSWWSYFAKS-RERNIGWRIDYFLVSDKLKNKIKDAKI 236
Query: 310 RSDVQGSTHCPVVLRL 325
++QGS HCPV L
Sbjct: 237 HPEIQGSDHCPVELTF 252
>gi|281417190|ref|ZP_06248210.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
gi|281408592|gb|EFB38850.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
Length = 251
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 156/257 (60%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
K+ +WNVNGLRAC+ K ++Y + + DI +Q+ + Q P L YH +W
Sbjct: 2 TKLISWNVNGLRACINK-GFLDYFKKADADIFCIQESKVQ----PGQIELELDGYHQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + T+ KPL V+ GI G+ ++ GRVIT +F + + VY PN+ +L+
Sbjct: 57 YAERKGYSGTAVFTRIKPLYVQNGI-GIDEHDREGRVITLEFDNYYLVNVYTPNAKKELE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F +Y+ L++ +I+ GD+NV + IDL NP+ N ++AG+T EER
Sbjct: 116 RLDYRMKWEDDFRNYLVG-LKAKKPVIVCGDMNVAHKEIDLKNPESNRRSAGFTDEERAK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G +D FR YPD+ GAYT+WS+ +AR N GWR+DY VSE+L + +
Sbjct: 175 FTELLNAGFIDTFRFFYPDKTGAYTWWSYM-FNARARNAGWRIDYFCVSEELKDRLVSAS 233
Query: 309 IRSDVQGSTHCPVVLRL 325
I DV GS HCPV L++
Sbjct: 234 IHDDVMGSDHCPVELQI 250
>gi|449437801|ref|XP_004136679.1| PREDICTED: apurinic endonuclease-redox protein-like [Cucumis
sativus]
Length = 501
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 161/266 (60%), Gaps = 11/266 (4%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYH- 127
T VK+ +WNVNGLRA +K ++ VE E+ D++ LQ+ + QE ++ + + YH
Sbjct: 240 TKSVKILSWNVNGLRALLKGSSAVELAEREDFDVLCLQETKLQEKDILNITKSLVDGYHY 299
Query: 128 MFWIGS--DKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYVPNS 183
+W S G G ++++ KP++V+YG+ G+S GRV+ +F F + VYVPNS
Sbjct: 300 TYWTCSVSKLGYSGTAIISRIKPISVRYGL-GISEHDGEGRVVMVEFDSFFLLNVYVPNS 358
Query: 184 GIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYT 242
G LK + +R+ WD +YI+ EL + +I++GDLN Q IDL NP N K+AG+T
Sbjct: 359 GDGLKRLSYRITQWDPSLSNYIK-ELEKSKPVILTGDLNCAHQEIDLYNPAGNRKSAGFT 417
Query: 243 VEERRNFR-ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLA 301
EER++F L G VD FR +PD G YTYW +R+ R NKGWRLDY LVSE++A
Sbjct: 418 NEERQSFETNFLQKGFVDTFRQKHPDVVG-YTYWGYRH-GGRKTNKGWRLDYFLVSERVA 475
Query: 302 NNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ D I DV GS HCP+ L L L
Sbjct: 476 EKVHDSYILPDVGGSDHCPIGLVLKL 501
>gi|257079900|ref|ZP_05574261.1| exonuclease III [Enterococcus faecalis JH1]
gi|294779916|ref|ZP_06745298.1| exodeoxyribonuclease III [Enterococcus faecalis PC1.1]
gi|307269235|ref|ZP_07550589.1| exodeoxyribonuclease III [Enterococcus faecalis TX4248]
gi|397700923|ref|YP_006538711.1| exodeoxyribonuclease III [Enterococcus faecalis D32]
gi|422866830|ref|ZP_16913440.1| exodeoxyribonuclease III [Enterococcus faecalis TX1467]
gi|256987930|gb|EEU75232.1| exonuclease III [Enterococcus faecalis JH1]
gi|294453028|gb|EFG21448.1| exodeoxyribonuclease III [Enterococcus faecalis PC1.1]
gi|306514454|gb|EFM83015.1| exodeoxyribonuclease III [Enterococcus faecalis TX4248]
gi|329578016|gb|EGG59431.1| exodeoxyribonuclease III [Enterococcus faecalis TX1467]
gi|397337562|gb|AFO45234.1| exodeoxyribonuclease III [Enterococcus faecalis D32]
Length = 251
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 155/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKCISWNVNGLRAVVKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE+ L+V+YG+ G+ +Q GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKEEALSVRYGL-GIEAHDQEGRMITLEYPEFFMVTCYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +EL +I+ GDLNV Q+IDL N N K AG+T EER+
Sbjct: 115 RLAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 174 FTELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVSAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 233 IHTDILGSDHCPVEVVLDF 251
>gi|375086371|ref|ZP_09732783.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
gi|374565408|gb|EHR36677.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
Length = 251
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 154/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRAC+ K +E + DI LQ+ + Q P L Y +W
Sbjct: 1 MKFVSWNVNGLRACMNK-GFMETFQTLDADIFCLQETKMQ----PHQLELDLPRYKQYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G G + TK +PL V YG+ G+ + GRVIT +F +F + VY PNS +L+
Sbjct: 56 SAEKKGYSGTAIFTKVEPLNVSYGL-GIEEHDHEGRVITLEFDKFFMVCVYTPNSKRELE 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F +Y+ EL +++ GDLNV + IDL NP N ++AG+T EER
Sbjct: 115 RLDYRMQWEDAFRNYL-VELNKQKPVVMCGDLNVAHKEIDLKNPKTNRRSAGFTDEERSK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL G VD FR+LYPD+ Y++WS+ K AR NN GWR+DY +VS+ + NIK+
Sbjct: 174 MTELLQAGFVDTFRYLYPDKTSIYSWWSYMRK-ARENNAGWRIDYFIVSKDIEENIKEAG 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I ++ GS HCPV L L +
Sbjct: 233 IHNEFFGSDHCPVSLELDI 251
>gi|420263761|ref|ZP_14766397.1| exodeoxyribonuclease [Enterococcus sp. C1]
gi|394769203|gb|EJF49066.1| exodeoxyribonuclease [Enterococcus sp. C1]
Length = 250
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 153/257 (59%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN E + D LQ+ + QE ++ L YH +W
Sbjct: 1 MKFISWNVNGLRAIVKKNFS-EVFEALDADFFCLQETKLQEGQI----ELDLPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE L+V+YG+ G+ + GRVIT ++ F IT Y PNS +L+
Sbjct: 56 YAEKKGYSGTAIFAKEPALSVRYGL-GIEEHDTEGRVITLEYPEFFLITCYTPNSQNELR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+ +EL+ ++I+ GDLNV ++ID+ N N K+AG+T EER
Sbjct: 115 RLDYRMTWEDAFLAYL-TELKQQKSVILCGDLNVAHKNIDIKNWKTNQKSAGFTPEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL G D FR+ YPD EG Y++WS+R +AR NN GWR+DY +VS+ L + D
Sbjct: 174 FSTLLAAGFTDTFRYFYPDAEGIYSWWSYR-FNARKNNAGWRIDYFVVSDNLNERLLDAK 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +D+ GS HCPV L L
Sbjct: 233 IHTDIIGSDHCPVELDL 249
>gi|374295499|ref|YP_005045690.1| exodeoxyribonuclease III [Clostridium clariflavum DSM 19732]
gi|359824993|gb|AEV67766.1| exodeoxyribonuclease III [Clostridium clariflavum DSM 19732]
Length = 251
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 108/253 (42%), Positives = 156/253 (61%), Gaps = 11/253 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
K+ +WNVNG+RA + K +E+ +E+ DI +Q+ + QE ++ L Y +W
Sbjct: 2 TKMISWNVNGIRAAMGK-GFLEFFKQEDADIFCIQETKVQEGQIT----LPLEGYCQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG GV + TK +P++V YGI G+ + GRVIT +F + ITVY PNS L
Sbjct: 57 YAKKKGYSGVAVFTKVEPVSVSYGI-GIEEHDNEGRVITLEFDDYYVITVYTPNSQKGLT 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+++ L N +I+ GD NV + IDL NP N K AG+T EER
Sbjct: 116 RLDYRMKWEDDFLAYLKA-LERNKPVIVCGDFNVAHKEIDLKNPQSNRKNAGFTDEERSK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ++ G +D+FR+LYPD+ GAYT+WS+ +AR NN GWR+DY L+S+ + +KD +
Sbjct: 175 FDNYINNGFIDSFRYLYPDKTGAYTWWSYM-FNARQNNAGWRIDYFLLSDCIKERLKDAL 233
Query: 309 IRSDVQGSTHCPV 321
I S+V GS HCPV
Sbjct: 234 IYSEVMGSDHCPV 246
>gi|330843681|ref|XP_003293776.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
gi|325075853|gb|EGC29694.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
Length = 249
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 161/254 (63%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+KV +WNV G R+ + K +Y+++ENPDI+ LQ+ + + EV +S S YH F
Sbjct: 1 LKVISWNVAGFRSVLTKGFS-DYVVKENPDILCLQETKIKPTEVQKSSIPSGYEYH-FVS 58
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIK-LK 188
G G GLLTK KPL++K+GI G++ + GRVITA++ F + Y+PNSG + LK
Sbjct: 59 ADQAGHHGTGLLTKLKPLSLKFGI-GIAKHDTEGRVITAEYDDFYLVNTYIPNSGSRGLK 117
Query: 189 AIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+D+R+ WD F Y+ EL ++ GDLNV IDL NP N K+AG+T++ER
Sbjct: 118 NLDYRIKEWDVDFQKYL-VELDKKKPVVWCGDLNVAHTEIDLKNPKTNTKSAGFTIQERT 176
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
+F + L+ G +D++RH P +EGA+T+W++ AR N GWRLDY +VS++ ++IK
Sbjct: 177 SFGDFLNKGFIDSYRHYNPGKEGAFTFWTYMG-GARAKNVGWRLDYFVVSKRYIDSIKTP 235
Query: 308 IIRSDVQGSTHCPV 321
IRS V GS HCP+
Sbjct: 236 FIRSTVMGSDHCPI 249
>gi|167756678|ref|ZP_02428805.1| hypothetical protein CLORAM_02216 [Clostridium ramosum DSM 1402]
gi|167702853|gb|EDS17432.1| exodeoxyribonuclease III [Clostridium ramosum DSM 1402]
Length = 251
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 157/258 (60%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RAC+ K + + E DI +Q+ + QE ++ + +Y
Sbjct: 1 MKLVSWNVNGIRACITK-GFYDVLKESKADIFCVQETKMQEGQIE---LEKHGYYTYMNS 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + +KEKPL YGI G+ + GRV+T ++++F + Y PNS +LK
Sbjct: 57 AEKKGYSGTLVFSKEKPLNYSYGI-GIEEHDHEGRVVTLEYEKFYLVNCYTPNSQNELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y++S L + +I+ GDLNV Q IDL NP N K AG++ EER
Sbjct: 116 LDYRMHWEDDFLAYLKS-LEKSKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL+ G +D +R+LYPD+EG Y++WS+R +AR NN GWR+DY +VS+ L IK+ I
Sbjct: 175 TNLLENGFIDTYRYLYPDQEGVYSWWSYR-FNARKNNAGWRIDYFIVSDCLKEGIKEAFI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
+D+ GS HCPV L + L
Sbjct: 234 CTDILGSDHCPVGLEIDL 251
>gi|398816273|ref|ZP_10574926.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
gi|398032975|gb|EJL26295.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
Length = 254
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 148/256 (57%), Gaps = 7/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K +Y E N DI LQ+ + QE ++ + YH +W
Sbjct: 2 MKLISWNVNGLRACVNK-GFYDYFKEANADIFCLQETKLQEGQIEMEIGE---EYHQYWN 57
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + T+ +PL+V+YG+ GRVIT +F+ F +TVY PN+ L +
Sbjct: 58 YAEKKGYSGTAVFTRMEPLSVRYGLEEDHEPEGRVITLEFQDFYLVTVYTPNAKRDLSRL 117
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+R+ W+ F +Y+ +L + +++ GDLNV Q IDL N N +G+T EER
Sbjct: 118 DYRLEWEDRFRNYLL-QLDAKKPVVVCGDLNVAHQEIDLKNAKSNRNNSGFTPEEREKMT 176
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
LL G VD +R+ YPD+ AYT+WSF K R N GWR+DY L SE+LA ++ I
Sbjct: 177 SLLAAGFVDTYRYFYPDQTDAYTWWSFMPK-VRERNIGWRIDYFLASERLAPSLLGAGID 235
Query: 311 SDVQGSTHCPVVLRLS 326
S V GS HCPVVL
Sbjct: 236 SQVLGSDHCPVVLEFG 251
>gi|424756722|ref|ZP_18184524.1| exodeoxyribonuclease III [Enterococcus faecalis R508]
gi|402408116|gb|EJV40605.1| exodeoxyribonuclease III [Enterococcus faecalis R508]
Length = 251
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 155/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKCISWNVNGLRAVVKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE+ L+V+YG+ G+ +Q GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKEEALSVRYGL-GIEAHDQEGRVITLEYPEFFIVTCYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +EL +I+ GDLNV Q+IDL N N K AG+T EER+
Sbjct: 115 RLAYRMTWEDAFSAYL-NELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 174 FTDLLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVSAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 233 IHTDILGSDHCPVEVVLDF 251
>gi|257867352|ref|ZP_05647005.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257873685|ref|ZP_05653338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
gi|257801408|gb|EEV30338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257807849|gb|EEV36671.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
Length = 252
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 154/258 (59%), Gaps = 11/258 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN E + D LQ+ + QE ++ L YH +W
Sbjct: 1 MKFISWNVNGLRAIVKKNFS-EVFEALDADFFCLQETKLQEGQI----ELDLPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE L+V+YG+ G+ + GRVIT ++ F IT Y PNS +L+
Sbjct: 56 YAEKKGYSGTAIFAKEPALSVRYGL-GIEEHDTEGRVITLEYPEFFLITCYTPNSQNELR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+ +EL+ +I+ GDLNV ++ID+ N N K+AG+T EER
Sbjct: 115 RLDYRMTWEDAFLAYL-TELKQQKPVILCGDLNVAHKNIDIKNWKTNQKSAGFTPEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL G D FR+ YPD EG Y++WS+R +AR NN GWR+DY +VS+ L ++ D
Sbjct: 174 FSTLLAAGFTDTFRYFYPDAEGIYSWWSYR-FNARKNNAGWRIDYFVVSDDLNESLLDAK 232
Query: 309 IRSDVQGSTHCPVVLRLS 326
I +D+ GS HCPV L L+
Sbjct: 233 IHTDIIGSDHCPVELDLN 250
>gi|310659330|ref|YP_003937051.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
gi|308826108|emb|CBH22146.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
Length = 250
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACVKK +EY E DI +Q+ + QE ++ L+ Y +W
Sbjct: 1 MKLISWNVNGIRACVKK-GFLEYFDEVEADIFCIQETKLQEGQID----LMLNDYEQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KP++V YGI + GRVIT ++ F + VY PN+ KL
Sbjct: 56 YAEKKGYSGTAVFTKIKPISVAYGIDIEHHDTEGRVITLEYDNFYLVNVYTPNAQPKLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F Y+ ++L +I+ GDLNV IDL NP N K G++ EER F
Sbjct: 116 LEYRMQWEDDFRRYL-NDLDEKKPVIVCGDLNVAHNEIDLKNPKSNRKNPGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD+G +D+FR YPD YT+WS+R +AR NN GWR+DY VS +L N +K+ I
Sbjct: 175 TNLLDSGFIDSFRFFYPDATEMYTWWSYR-FNARENNAGWRIDYFCVSNKLKNELKNAEI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPVVL +
Sbjct: 234 HMDILGSDHCPVVLEI 249
>gi|373115658|ref|ZP_09529827.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670180|gb|EHO35266.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
Length = 250
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 157/256 (61%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ TWNVNGLRAC+ K +++ + D++ LQ+ + Q D++ L Y +FW
Sbjct: 1 MRLVTWNVNGLRACLGKGF-LDFFQRVDADVVCLQETKLQPDQIA----LELPGYRLFWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
++K G G + T+ +PL+V GI + GRVITA+F F + Y PN+ +L
Sbjct: 56 SAEKKGYSGTAVFTRVEPLSVTCGIGLDAHDHEGRVITAEFDGFFLVCCYTPNAQNELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
ID+RM W+ F Y+ EL +++ GDLNV + IDL NP N +AG++ +ER
Sbjct: 116 IDYRMQWEDDFRAYLM-ELDKKKPVVLCGDLNVAHEEIDLKNPKSNRGSAGFSDQERGKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL +G D FR LYPD GAYT+WS+R +AR NN GWR+DY +VS++L ++D II
Sbjct: 175 TELLSSGFTDTFRALYPDRTGAYTWWSYR-FNARKNNAGWRIDYFIVSDRLLPRVRDNII 233
Query: 310 RSDVQGSTHCPVVLRL 325
++V+GS HCPV L L
Sbjct: 234 HAEVEGSDHCPVELVL 249
>gi|390345498|ref|XP_789515.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Strongylocentrotus purpuratus]
Length = 342
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/301 (37%), Positives = 181/301 (60%), Gaps = 21/301 (6%)
Query: 41 QKSDDENQIPKKQVKFDISHEEGSRKPYTT----------KVKVSTWNVNGLRACVKKNA 90
+ S+ E + +K+ K +++ EE + YTT +K+S WNV G++A +KK
Sbjct: 49 EASNGEEVVAEKKAKPEVA-EEPKEEVYTTDRKSESGEACNLKISAWNVGGMKAWIKKGG 107
Query: 91 CVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSD-KGQGGVGLLTKEKPL 149
++Y+ +E+PDI Q+ + + P L YH+ + ++ KG GV L +K++PL
Sbjct: 108 -IDYLTKESPDIFFAQETKIDATKPPP--EADLDDYHITYNAAEKKGYSGVALFSKKEPL 164
Query: 150 TVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSE 207
+V G+ G+ ++ GR+ITA++ F F+ VYVPNS KL +D+R WD+ F+ Y++ +
Sbjct: 165 SVTKGM-GIEEHDKEGRLITAEYDSFYFVGVYVPNSSRKLVRLDYRQEWDKDFHAYLK-K 222
Query: 208 LRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEERRNFRELLDTGLVDAFRHLYP 266
L + +I GD+NV + IDL NP N KT G+T +ER F LLD G VD+FRHLYP
Sbjct: 223 LDAKKPVICCGDMNVAHEEIDLKNPKSNRNKTPGFTDQEREGFTSLLDMGFVDSFRHLYP 282
Query: 267 DEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLS 326
+E AY++W++ + R N GWRLDY ++S+ L + D +R GS HCP+V+ L+
Sbjct: 283 EEADAYSFWTYMG-NCRAKNVGWRLDYGVISKALVPKLCDNQMRLQTFGSDHCPMVVSLA 341
Query: 327 L 327
+
Sbjct: 342 M 342
>gi|302876908|ref|YP_003845541.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|307687596|ref|ZP_07630042.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|302579765|gb|ADL53777.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
Length = 253
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 157/254 (61%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACV+K +++ + DI LQ+ + Q+ ++ L Y +W
Sbjct: 1 MKLISWNVNGIRACVEK-GFLDFFKSVDADIFCLQETKLQQGQID----LDLEGYEQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKEKPL+ YG+ ++ GRVIT ++ F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAVFTKEKPLSASYGLNIEEHDKEGRVITLEYDDFYLVTVYTPNSKEELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F Y++ +L N +I+ GDLNV + IDL NP N K G++ EER F
Sbjct: 116 LEYRMEWEDAFRAYLK-KLEKNKPVIVCGDLNVAHKEIDLKNPKTNRKNPGFSDEERAKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL +G +D +R+ YPD+EGAY++WS+R +AR N GWR+DY ++SE+L + + I
Sbjct: 175 SELLASGFIDTYRYFYPDKEGAYSWWSYRF-NARTKNAGWRIDYFVISEELKDKLVSAEI 233
Query: 310 RSDVQGSTHCPVVL 323
+++ GS HCPV L
Sbjct: 234 HNEILGSDHCPVEL 247
>gi|312900096|ref|ZP_07759412.1| exodeoxyribonuclease III [Enterococcus faecalis TX0470]
gi|311292731|gb|EFQ71287.1| exodeoxyribonuclease III [Enterococcus faecalis TX0470]
Length = 251
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 153/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA KKN ++ E + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKCISWNVNGLRAVFKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE+ L+V+YG+ G+ +Q GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKEEALSVRYGL-GIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +EL +I+ GDLNV Q IDL N N K AG+T EER+
Sbjct: 115 RLAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 174 FTELLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVSAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 233 IHTDILGSDHCPVEVVLDF 251
>gi|304385589|ref|ZP_07367933.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
gi|304328093|gb|EFL95315.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
Length = 251
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 158/259 (61%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VK + ++ E + DI +Q+ + QE ++ L YH +W
Sbjct: 1 MKLISWNVNGLRAAVK-HGFLDVFNELDADIFCVQETKLQEGQID----LDLPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +P+ V YG+ G+ +Q GRVIT ++++F +T Y PNS +L+
Sbjct: 56 YAEKKGYSGTAVFTKREPVAVSYGL-GIPEFDQEGRVITLEYEKFFLVTCYTPNSQPELR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM WD F Y++ +L +I GDLNV + IDL N N AG+T EER+
Sbjct: 115 RLDYRMNWDDAFRAYVK-QLADTKPVIFCGDLNVAHEEIDLKNDRTNHHNAGFTDEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL +G D +R+ YPD+EG Y++WS+R +AR NN GWR+DY + S+ L + D
Sbjct: 174 FTELLQSGFTDTYRYFYPDKEGVYSWWSYR-FNARANNAGWRIDYFVTSQALDKQLADAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCP+ L L+L
Sbjct: 233 IHTEIFGSDHCPIELDLNL 251
>gi|312898827|ref|ZP_07758215.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
gi|310619989|gb|EFQ03561.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
Length = 250
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 153/254 (60%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRA +KK E E + DI LQ+ + Q ++ L Y +W
Sbjct: 1 MKFISWNVNGLRAVMKK-GFPEIFKELDADIFCLQETKLQAGQI----EMDLPGYEQYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+DK G G + T+ KPL+V YG+ + GR+IT +F+ F FIT Y PNS +L
Sbjct: 56 YADKKGYSGTAIFTRIKPLSVSYGMNIDEHDHEGRLITLEFEDFYFITCYTPNSQSELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F +Y+ +EL +I GDLNV + IDL NP N K AG++ EER
Sbjct: 116 LDYRMRWEDDFRNYV-TELNRTKPVIFCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL G D +R+ YPD+EG Y++WS+R K AR NN GWR+DY + S L + +K+ +I
Sbjct: 175 TELLAAGFTDTWRYFYPDKEGVYSWWSYRFK-ARQNNSGWRIDYFITSSALDSRLKEALI 233
Query: 310 RSDVQGSTHCPVVL 323
++++GS HCPV L
Sbjct: 234 YTNIEGSDHCPVGL 247
>gi|257877428|ref|ZP_05657081.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325568814|ref|ZP_08145107.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
gi|257811594|gb|EEV40414.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325157852|gb|EGC70008.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
Length = 250
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 153/258 (59%), Gaps = 11/258 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN E + D LQ+ + QE ++ L YH +W
Sbjct: 1 MKFISWNVNGLRAIVKKNFS-EVFEALDADFFCLQETKLQEGQI----ELDLPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE L+V+YG+ G+ + GRVIT ++ F IT Y PNS +L+
Sbjct: 56 YAEKKGYSGTAIFAKEPALSVRYGL-GIEEHDTEGRVITLEYPEFFLITCYTPNSQNELR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+ +EL+ +I+ GDLNV ++ID+ N N K+AG+T EER
Sbjct: 115 RLDYRMTWEDAFLAYL-TELKQQKPVILCGDLNVAHKNIDIKNWKTNQKSAGFTPEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL G D FR+ YPD EG Y++WS+R +AR NN GWR+DY +VS+ L + D
Sbjct: 174 FSTLLAAGFTDTFRYFYPDAEGIYSWWSYR-FNARKNNAGWRIDYFVVSDDLNERLLDAK 232
Query: 309 IRSDVQGSTHCPVVLRLS 326
I +D+ GS HCPV L L+
Sbjct: 233 IHTDIIGSDHCPVELDLN 250
>gi|375309937|ref|ZP_09775215.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
gi|375077890|gb|EHS56120.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
Length = 254
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 148/255 (58%), Gaps = 7/255 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K Y+ E NPDI +Q+ + QE ++ +++ Y +W
Sbjct: 1 MKLISWNVNGLRACVTK-GFYTYLKETNPDIFCVQETKLQEGQI---LMENMEEYTQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + TK KPL+V YG+ GR IT +F+RF + VY PN+ L +
Sbjct: 57 YAEKKGYSGTAIFTKFKPLSVHYGLEENGEPEGRTITLEFERFYLVNVYTPNTKRDLSRL 116
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+R+ W+ F +Y+Q +L ++ +I+ GDLNV Q IDL N N AG+T EER
Sbjct: 117 PYRLEWEDRFRNYLQ-QLDASKPVIVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMS 175
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+LL G +D FRH YPD Y++WS+ K R N GWR+DY LVS++L + D I
Sbjct: 176 QLLGAGFIDTFRHFYPDRTDVYSWWSYMPK-VRERNIGWRIDYFLVSDRLRPLLIDASID 234
Query: 311 SDVQGSTHCPVVLRL 325
+ GS HCPV+L +
Sbjct: 235 CHITGSDHCPVILDM 249
>gi|406027905|ref|YP_006726737.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
gi|405126394|gb|AFS01155.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
Length = 256
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 111/258 (43%), Positives = 150/258 (58%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VK + E + + D +Q+ + QE ++ L Y ++
Sbjct: 1 MKFISWNVNGLRAAVKHD-FAETFKKLDADFFCIQETKMQEGQL----ELDLPGYQQYFN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK PL V YGI N GR IT ++ F +T YVPNSG LK
Sbjct: 56 YAERKGYSGTAIFTKHAPLDVTYGINSDEFNHEGRAITLEYPDFYLVTSYVPNSGAGLKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+DFRM W++ FY Y+ +EL + +I+ GDLNV + IDL NP N AG+T EER++F
Sbjct: 116 LDFRMGWNKAFYQYL-TELDAKKPVILCGDLNVAHKEIDLKNPQSNHHNAGFTDEERQDF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL G +D FRH YPD+ Y++WS+R S R N GWR+DY + S +LA+ I+D I
Sbjct: 175 TNLLKAGFMDTFRHFYPDQTDIYSWWSYRFHS-RDRNAGWRIDYFVASNRLADEIEDSKI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
+DV GS HCPV L L
Sbjct: 234 LTDVFGSDHCPVELDTKL 251
>gi|429735837|ref|ZP_19269760.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429156761|gb|EKX99382.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 250
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/256 (43%), Positives = 151/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++ +WNVNGLRA +KK +E E N D LQ+ + QE + + + F+
Sbjct: 1 MRFVSWNVNGLRAALKK-GFMESFKELNADAFCLQETKMQEGQ---AILDLPGYEQYFYS 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+ KPL+V YGI G+ + GRVIT +F+ +TVY PNS L
Sbjct: 57 AEKKGYSGTAIFTRLKPLSVSYGI-GIEEHDNEGRVITMEFEDVYLVTVYTPNSKNGLLR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM+W+ F ++ +LR+ +++ GDLNV IDL NP N + AG+T EER F
Sbjct: 116 LDYRMVWEDAFRAFLL-DLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL G VD FR LYPD GAYT+WS+ + AR N GWR+DY LVSE+L + I I
Sbjct: 175 TELLAAGFVDTFRALYPDLTGAYTWWSYL-RHARETNAGWRIDYFLVSEELRDRIAAAEI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+DV GS HCPV L L
Sbjct: 234 HADVFGSDHCPVSLTL 249
>gi|366166303|ref|ZP_09466058.1| exodeoxyribonuclease III [Acetivibrio cellulolyticus CD2]
Length = 251
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 156/257 (60%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA + K ++ +E+ DI +Q+ + QE ++ F Y+ +W
Sbjct: 2 LKMISWNVNGIRAVMGK-GFTDFFQKEDADIFCIQETKVQEGQIEIPFEG----YYKYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG GV + TK KP+TV YGI G+ ++ GRVIT +F + +TVY PNS L
Sbjct: 57 YAEKKGYSGVAVFTKIKPITVSYGI-GIEEHDKEGRVITLEFDEYYVVTVYTPNSQRGLT 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y++S L +I+ GDLNV + IDL NP N K AG+T EER
Sbjct: 116 RLHYRMKWEDDFLSYLKS-LERYKPVIVCGDLNVAHKEIDLKNPQSNKKNAGFTEEERSK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ++ G +D FR+ YPD G YT+WS+ S R NN GWR+DY +VSE++ + +KD +
Sbjct: 175 FDSYVNNGFIDTFRYFYPDRIGVYTWWSYMFNS-RQNNAGWRIDYFIVSERIKDRLKDAL 233
Query: 309 IRSDVQGSTHCPVVLRL 325
+ S++ GS HCPV + L
Sbjct: 234 VYSEITGSDHCPVGILL 250
>gi|288799645|ref|ZP_06405104.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
gi|288332893|gb|EFC71372.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
Length = 250
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 160/260 (61%), Gaps = 14/260 (5%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
+K +WNVNGLRA V K E I + + D LQ+ + Q ++ F Y +W
Sbjct: 1 MKFISWNVNGLRASVTKG--FEDIFKTLDADFFCLQETKMQAGQLDLQFEG----YESYW 54
Query: 131 IGSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKL 187
+DK G G + TK PL+V+YGI G+ + GRV+T +F++F +TVY PNS +L
Sbjct: 55 NYADKKGYSGTAIYTKHSPLSVQYGI-GIDQHDHEGRVVTLEFEQFYLVTVYTPNSQDEL 113
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
K +D+RM W++ F Y+ +L ++ +++ GD+NV Q IDL NP N + AG+T EER
Sbjct: 114 KRLDYRMEWERDFQAYL-VKLDASKPVVVCGDMNVAHQEIDLKNPKTNRRNAGFTDEERE 172
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
LLD G +D FR+LYP EE Y++WS+R K AR N GWR+DY L+SE+L +N+ D
Sbjct: 173 KMTNLLDNGFIDTFRYLYP-EEVTYSWWSYRFK-AREKNTGWRIDYFLISERLKSNLTDA 230
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV L L+
Sbjct: 231 KIHTDIFGSDHCPVELDLTF 250
>gi|385826522|ref|YP_005862864.1| exodeoxyribonuclease A [Lactobacillus johnsonii DPC 6026]
gi|329667966|gb|AEB93914.1| exodeoxyribonuclease A [Lactobacillus johnsonii DPC 6026]
Length = 260
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 156/259 (60%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA ++ + V + + DI +Q R + +EV + L Y+ +W
Sbjct: 7 MKFMSWNVNGLRAALR-HGFVNTFTDLDADIFGIQDTRVEPNEV----KIDLPGYYQYWN 61
Query: 131 IGSDKGQGGVGLLTKEKPLTVK--YGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKEKP+TV +G+P V + GR IT +F F FI V VP SG KL+
Sbjct: 62 YAERKGYAGTAVFTKEKPITVANGFGVPEVDGE-GRSITLEFSNFYFINVQVPFSGEKLQ 120
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+DFR +W Q F +Y+ ++L +II GD++V + IDLA PD N G+T ER+
Sbjct: 121 RLDFRELWAQIFRNYV-TKLMQYKPVIIGGDMSVAHERIDLAEPDDNHHRPGFTGIERKE 179
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G +D FR+ +PDE YTYWS+R+K AR N GWRLDY LVS L + + +
Sbjct: 180 FSELLNAGFIDTFRYFHPDE-AKYTYWSYRDKEARAENLGWRLDYFLVSNNLEDKLTNAK 238
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCP+ L + +
Sbjct: 239 ILNNIMGSDHCPIELDVDI 257
>gi|270290148|ref|ZP_06196374.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|418069863|ref|ZP_12707140.1| exonuclease III [Pediococcus acidilactici MA18/5M]
gi|270281685|gb|EFA27517.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|357536394|gb|EHJ20425.1| exonuclease III [Pediococcus acidilactici MA18/5M]
Length = 251
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 157/259 (60%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VK + ++ E + DI +Q+ + QE ++ L YH +W
Sbjct: 1 MKLISWNVNGLRAAVK-HGFLDVFNELDADIFCVQETKLQEGQID----LDLPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +P+ V YG+ G+ +Q GRVIT +++ F +T Y PNS +L+
Sbjct: 56 YAEKKGYSGTAVFTKREPVAVSYGL-GIPEFDQEGRVITLEYEEFFLVTCYTPNSQPELR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM WD F Y++ +L +I GDLNV + IDL N N AG+T EER+
Sbjct: 115 RLDYRMNWDDAFRAYVK-QLADTKPVIFCGDLNVAHEEIDLKNDRTNHHNAGFTDEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL +G D +R+ YPD+EG Y++WS+R +AR NN GWR+DY + S+ L + D
Sbjct: 174 FTELLQSGFTDTYRYFYPDKEGVYSWWSYR-FNARANNAGWRIDYFVTSQALDKQLADAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCP+ L L+L
Sbjct: 233 IHTEIFGSDHCPIELDLNL 251
>gi|254479049|ref|ZP_05092404.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
gi|214035005|gb|EEB75724.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
Length = 258
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 160/254 (62%), Gaps = 6/254 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC++K ++Y + DI +Q+ + QE++ + L+ Y+ FW
Sbjct: 1 MKLVSWNVNGLRACLQK-GFMDYFKAIDADIFCIQETKLQENQ-KDIEGLDLNGYYAFWN 58
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KPL+V YGI + + GRVIT ++++F + Y PNS L
Sbjct: 59 FAEKKGYSGTAVFTKYKPLSVSYGIGTPHHDKEGRVITLEYEKFFLVNTYTPNSQRGLTR 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W++ F Y+ +L S +I+ GDLNV Q ID+ NP N + AG+T EER
Sbjct: 119 LDYRMQWEEDFRSYLL-KLDSLKPVILCGDLNVAHQEIDIKNPAANRRNAGFTDEEREKM 177
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL++G +D FR+ YPD++ AYT+WS+ + +AR N GWR+DY +VSE+L + + D I
Sbjct: 178 TILLNSGFIDTFRYFYPDKKDAYTWWSYMH-NAREKNIGWRVDYFIVSERLKDYLIDSQI 236
Query: 310 RSDVQGSTHCPVVL 323
S+V GS HCPVVL
Sbjct: 237 HSEVMGSDHCPVVL 250
>gi|427440664|ref|ZP_18924936.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
gi|425787371|dbj|GAC45724.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
Length = 256
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 158/261 (60%), Gaps = 11/261 (4%)
Query: 70 TKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMF 129
T +K+ +WNVNGLRA VK + ++ E + D+ +Q+ + QE ++ L YH +
Sbjct: 4 TVLKLISWNVNGLRAAVK-HGFLDVFNELDADMFCVQETKLQEGQID----LDLPGYHQY 58
Query: 130 W-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIK 186
W KG G + TK +P+ V YG+ G+ +Q GRVIT +++ F +T Y PNS +
Sbjct: 59 WNYAEKKGYSGTAIFTKREPVAVSYGL-GIPEFDQEGRVITLEYEEFFLVTCYTPNSQPE 117
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
L+ +D+RM WD F Y++ +L +I GDLNV + IDL N N AG+T EER
Sbjct: 118 LRRLDYRMNWDDAFRAYVK-QLADTKPVIFCGDLNVAHEEIDLKNDRTNHHNAGFTDEER 176
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
+ F ELL +G D +R+ YPD+EG Y++WS+R +AR NN GWR+DY + S+ L + D
Sbjct: 177 QKFTELLQSGFTDTYRYFYPDKEGVYSWWSYR-FNARANNAGWRIDYFVTSQALDKQLAD 235
Query: 307 CIIRSDVQGSTHCPVVLRLSL 327
I +++ GS HCP+ L L+L
Sbjct: 236 AKIHTEIFGSDHCPIELDLNL 256
>gi|365843219|ref|ZP_09384168.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
gi|364573045|gb|EHM50567.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
Length = 250
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 156/256 (60%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ TWNVNGLRAC+ K +++ + D++ LQ+ + Q D++ L Y +FW
Sbjct: 1 MRLVTWNVNGLRACLGK-GFLDFFQRVDADVVCLQETKLQPDQIA----LELPGYRLFWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
++K G G + T+ +PL+V GI + GRVITA+F F + Y PN+ +L
Sbjct: 56 SAEKKGYSGTAVFTRVEPLSVTCGIGLDAHDHEGRVITAEFDGFFLVCCYTPNAQNELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
ID+RM W+ F Y+ EL +++ GDLNV + IDL NP N AG++ +ER
Sbjct: 116 IDYRMQWEDDFRAYLM-ELDKKKPVVLCGDLNVAHEEIDLKNPRSNRGNAGFSDQERGKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL +G D FR LYPD GAYT+WS+R +AR NN GWR+DY +VS++L ++D II
Sbjct: 175 TELLSSGFTDTFRALYPDRTGAYTWWSYR-FNARKNNAGWRIDYFIVSDRLLPRVRDNII 233
Query: 310 RSDVQGSTHCPVVLRL 325
++V+GS HCPV L L
Sbjct: 234 HAEVEGSDHCPVELVL 249
>gi|392987530|ref|YP_006486123.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
gi|392334950|gb|AFM69232.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
Length = 250
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 151/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN ++ E + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKFISWNVNGLRAIVNKN-FLDVFHELDADFFCLQETKLQAGQI----ELDLPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + KE L V YG+ + +Q GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAERKGYSGTAIFAKEPALNVSYGMGIDLHDQEGRLITLEYPEFFLVTCYTPNSQNELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY Y++ EL+ +I+ GDLNV Q IDL N N K AG+T+EER F
Sbjct: 116 LDYRLQWEEAFYHYLE-ELKKQKPVIVCGDLNVAHQEIDLKNWKTNQKNAGFTMEERTAF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL G +D FR+ YP++ G Y++WS+R +AR NN GWR+DY L S++L + D I
Sbjct: 175 SHLLANGFIDTFRYFYPEQTGIYSWWSYR-FNARKNNAGWRIDYFLTSDELKPRLIDAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+ + GS HCPV L L
Sbjct: 234 HTSIMGSDHCPVELDL 249
>gi|331002672|ref|ZP_08326187.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
gi|330407085|gb|EGG86589.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
Length = 262
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 156/258 (60%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRA V K +++ + + DI +Q+ + E ++ L Y+ +W
Sbjct: 13 KMISWNVNGLRAAVTK-GFLDFFRDIDADIFCIQESKLSEGQI----ELDLPGYYDYWNY 67
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG GV + TK+KP+ V YGI G+ + GRVITA++ F IT Y PNS L
Sbjct: 68 AAKKGYSGVAVFTKDKPIGVTYGI-GIEEHDNEGRVITAEYDDFYLITCYTPNSQRGLTR 126
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F DY+ +L +I GDLNV + IDL NP N K AG+T EER
Sbjct: 127 LDYRMAWEDAFLDYVL-KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKM 185
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L +G D+FR LYPD+EGAY++WS+ AR N GWR+DY +VS++L + IK+ I
Sbjct: 186 DIVLSSGFADSFRVLYPDKEGAYSWWSYMG-GARAKNVGWRIDYFIVSDKLKDRIKEAKI 244
Query: 310 RSDVQGSTHCPVVLRLSL 327
SD+ GS HCPV L + +
Sbjct: 245 HSDILGSDHCPVELDIEI 262
>gi|300362953|ref|ZP_07059123.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353003|gb|EFJ68881.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
Length = 268
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 158/259 (61%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA ++ + V + + DI A+Q R + +EV + L Y+ +W
Sbjct: 15 MKFMSWNVNGLRAALR-HGFVNTFTDLDADIFAIQDTRVEANEV----QIDLPGYYQYWN 69
Query: 131 IGSDKGQGGVGLLTKEKPLTVK--YGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKEKP+TV +G+P V + GR IT +F F FI V VP SG KL+
Sbjct: 70 YAKRKGYAGTAVFTKEKPITVANGFGVPEVDGE-GRSITLEFPNFYFIDVQVPFSGEKLQ 128
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+DFR +W Q F +Y+ ++L +II GD++V + IDLA PD N + AG+T ER+
Sbjct: 129 RLDFRELWAQTFRNYV-TKLMQYKPVIIGGDMSVAHEKIDLAEPDDNHRHAGFTGIERKE 187
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G +D FR+ +PD E YTYWS+R + AR N GWRLDY LVS L + I +
Sbjct: 188 FSELLNAGFIDTFRYFHPD-EAKYTYWSYR-EDARAKNIGWRLDYFLVSHNLEDKIINTK 245
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCP+ L L +
Sbjct: 246 ILNNIMGSDHCPIELDLDI 264
>gi|20808602|ref|NP_623773.1| exonuclease III [Thermoanaerobacter tengcongensis MB4]
gi|20517232|gb|AAM25377.1| Exonuclease III [Thermoanaerobacter tengcongensis MB4]
Length = 258
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 160/254 (62%), Gaps = 6/254 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC++K ++Y + DI +Q+ + QE++ + L+ Y+ FW
Sbjct: 1 MKLVSWNVNGLRACLQK-GFMDYFKAIDADIFCIQETKLQENQ-KDIEGLDLNGYYAFWN 58
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KPL+V YGI + + GRVIT ++K+F + Y PNS L
Sbjct: 59 FAEKKGYSGTAVFTKYKPLSVSYGIGTPHHDKEGRVITLEYKKFFLVNAYTPNSQRGLTR 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W++ F Y+ +L S +I+ GDLNV Q ID+ NP N + AG+T EER
Sbjct: 119 LNYRMEWEEDFRSYLL-KLDSVKPVILCGDLNVAHQEIDIKNPAANRRNAGFTDEEREKM 177
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL++G +D FR+ YPD++ AYT+WS+ + +AR N GWR+DY +VSE+L + + D I
Sbjct: 178 TILLNSGFIDTFRYFYPDKKDAYTWWSYMH-NAREKNIGWRVDYFIVSERLKDYLIDSQI 236
Query: 310 RSDVQGSTHCPVVL 323
S+V GS HCPVVL
Sbjct: 237 HSEVMGSDHCPVVL 250
>gi|319935137|ref|ZP_08009577.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
gi|319809962|gb|EFW06345.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
Length = 252
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 161/252 (63%), Gaps = 10/252 (3%)
Query: 76 TWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK 135
+WNVNGLRAC+KK ++ + + DI A+Q+ + Q +++ F S+Y+ K
Sbjct: 5 SWNVNGLRACLKK-GFEDFFKDVDADIFAIQETKLQRNQIDLEFEGYTSYYN---DAIKK 60
Query: 136 GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFR 193
G GV + TK++P+ V YG+ G+ +Q GR+IT +F++F F+ VY PNS +L+ +D+R
Sbjct: 61 GYSGVAIYTKKEPMNVIYGM-GIEEHDQEGRLITLEFEKFYFVAVYTPNSKRELERLDYR 119
Query: 194 MIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELL 253
+W+ F ++Q +L+ + +++ GDLNV IDL N N K AG+T +ER F ELL
Sbjct: 120 QVWEDAFRQHVQ-KLKESKPVVLCGDLNVAHNEIDLKNDKTNHKNAGFTDQERAKFSELL 178
Query: 254 DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDV 313
++G +D FR+ YP+ E Y++WS+ K AR N GWR+DY +VSE L NIKD I +++
Sbjct: 179 NSGFIDTFRYKYPETE-MYSWWSYMFK-AREKNAGWRIDYFVVSEDLKENIKDAYIYTEI 236
Query: 314 QGSTHCPVVLRL 325
GS HCPV + L
Sbjct: 237 MGSDHCPVGVEL 248
>gi|347531556|ref|YP_004838319.1| exodeoxyribonuclease [Roseburia hominis A2-183]
gi|345501704|gb|AEN96387.1| exodeoxyribonuclease [Roseburia hominis A2-183]
Length = 255
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/262 (41%), Positives = 151/262 (57%), Gaps = 17/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRAC++K E+ + DI +Q+ + QE ++ PE Y+
Sbjct: 1 MKLISWNVNGLRACMQK-GFAEFFTASDADIFCIQESKLQEGQIDFAPEG-------YYA 52
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + T+++PL+V YGI G+ + GRVIT +F F +T Y PNS
Sbjct: 53 YWNYAQKKGYSGTAIFTRKEPLSVHYGI-GIPQHDTEGRVITLEFPDFYMVTCYTPNSQN 111
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
+L + +RM W+ F Y++ L N +I+ GDLNV + IDL NP N K AG+T EE
Sbjct: 112 ELARLSYRMEWEDAFLSYLKG-LDRNKPLILCGDLNVAHEEIDLKNPKTNRKNAGFTDEE 170
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R LL G D FRH YPD EG Y++WS+R AR N GWR+DY + S L + +
Sbjct: 171 RTKMTALLSAGFTDTFRHFYPDTEGIYSWWSYRFH-AREKNAGWRIDYFITSSALDDRLV 229
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I +DV GS HCPV L + L
Sbjct: 230 DAGILTDVTGSDHCPVTLTVDL 251
>gi|406931444|gb|EKD66730.1| hypothetical protein ACD_49C00017G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 159/259 (61%), Gaps = 7/259 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ ++NVNG+R+ ++K ++Y++ ENPDI+ LQ+++ QE+E+P + Y ++W
Sbjct: 1 MKLISFNVNGIRSNIQK-GFLDYLISENPDIIGLQEVKAQENELPIKIDLASLWYEIYWN 59
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
++K G + TK KPL+V Y + ++ R+IT +F+ F F+ VY PN+ +L+
Sbjct: 60 SANKKWYSGTAIFTKIKPLSVSYWLWLAEHDEEWRIITLEFENFYFVNVYTPNAKRELER 119
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R +WD F DY++ L N +I D NV Q IDL NP N AG+T EER F
Sbjct: 120 LDYRQLWDSLFLDYLK-RLEQNKPVITCWDFNVAHQEIDLTNPKTNKWNAGFTPEEREWF 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWS-FRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+ + +G +D FR+ YPD+ Y++WS F N AR N GWR+DY L+S L N +K
Sbjct: 179 SKFISSGFIDTFRYFYPDKTWEYSWWSNFANSRAR--NIGWRIDYFLISNTLKNKLKSAF 236
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I+ +V+ S HCPV + + L
Sbjct: 237 IKQEVRWSDHCPVGIEIEL 255
>gi|323490286|ref|ZP_08095501.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
gi|323395956|gb|EGA88787.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
Length = 251
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/257 (39%), Positives = 162/257 (63%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KK +++ E N D+ LQ+I+ QE ++ L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVMKK-GFMDFFTEVNADVFCLQEIKLQEGQI----EMDLPGYYTYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK+KP+ V+YG+ G+ + GR+IT +F + ITVY PNS L
Sbjct: 56 YAHKKGYSGTAIFTKQKPVAVQYGL-GLEELDTEGRIITLEFDSYYVITVYTPNSQHGLL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R++W++ ++++ L ++ +++ GDLNV + IDL NP N K +G+T EER
Sbjct: 115 RLDYRLLWEEAILSFVKT-LDNHKPVLLCGDLNVAHEEIDLKNPKANKKNSGFTPEERSK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+ L++G VD FR+ YP+EEG Y++WS+R+ + R N GWR+DY L S++L +++
Sbjct: 174 MTQFLESGFVDTFRYFYPEEEGHYSWWSYRS-NCREKNVGWRIDYFLASQRLVPELQNAK 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I D+ GS HCPV L++
Sbjct: 233 IHKDIWGSDHCPVELQI 249
>gi|227874120|ref|ZP_03992326.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
gi|227840032|gb|EEJ50456.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
Length = 254
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/258 (43%), Positives = 157/258 (60%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRA + KN +E + D+ LQ+ + QE ++ L Y +W
Sbjct: 5 KLISWNVNGLRAVMGKN-FMEDFKRLDADMFCLQETKLQEGQID----LDLPGYFQYWNY 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+PL+V+YGI GV +Q GRVIT ++ F ITVYVPNS +LK
Sbjct: 60 AVKKGYSGTAIFTKEEPLSVQYGI-GVEEHDQEGRVITLEYPEFYLITVYVPNSQGELKR 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM ++ F +YI + L +I GDLNV + IDL NPD N AG++ EER F
Sbjct: 119 LPYRMKFEDAFLNYILT-LEKKKPVIYCGDLNVAHEEIDLKNPDSNHMNAGFSDEERAKF 177
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LD+G +D+FRH YP++E Y++WS+R K AR N GWR+DY +VS+QL + I
Sbjct: 178 SRVLDSGYLDSFRHFYPNKEEEYSWWSYRTK-ARDRNVGWRIDYFVVSKQLEKKLLSASI 236
Query: 310 RSDVQGSTHCPVVLRLSL 327
+V GS HCPV + L L
Sbjct: 237 HQEVMGSDHCPVEITLDL 254
>gi|422731891|ref|ZP_16788239.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
gi|315162099|gb|EFU06116.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
Length = 251
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 153/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN ++ E + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKCISWNVNGLRAVVKKNF-MDVFNELDADFFCLQETKLQAGQID----LELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE+ L+V+YG+ G+ +Q GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKEEALSVRYGL-GIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +EL +I+ GDLNV Q IDL N N K AG+T EER+
Sbjct: 115 RLAYRMTWEDAFRAYL-NELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LLD+G D FR+ YP+ EG Y++WS+R +AR NN GWR+DY +VSE L +
Sbjct: 174 FTGLLDSGFTDTFRYFYPEAEGIYSWWSYR-FNARKNNAGWRIDYFVVSESLNERLVSAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L
Sbjct: 233 IHTDILGSDHCPVEVVLDF 251
>gi|420145437|ref|ZP_14652903.1| Exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402932|gb|EJN56217.1| Exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 254
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 155/259 (59%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN +E+ +++ D +Q+ + Q ++ +L Y+ +W
Sbjct: 1 MKFISWNVNGLRAVVKKN-FMEFFEQQDADFFCIQETKLQAGQI----ELTLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL V YG+ GV+ +Q GR+IT ++K F +T Y PNS KLK
Sbjct: 56 YAERKGYSGTAIFTKHEPLNVTYGM-GVAEHDQEGRLITLEYKDFYLLTCYTPNSQTKLK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI S L +I GDLNV + IDL N N AG++ EER
Sbjct: 115 RLDYRMSWEDAFRSYI-STLNQKKPVIFCGDLNVAHEPIDLKNDKTNHHNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL G D+FR+ YPD+ Y++WS+R +AR NN GWR+DY + ++QL + D
Sbjct: 174 FSQLLAAGFTDSFRYFYPDQV-TYSWWSYR-FNARQNNAGWRIDYFVTADQLQPQLADAA 231
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +DV GS HCPV+L L
Sbjct: 232 ILTDVLGSDHCPVMLTTKL 250
>gi|336392108|ref|ZP_08573507.1| exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 257
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 108/255 (42%), Positives = 154/255 (60%), Gaps = 12/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN +E+ +++ D +Q+ + Q ++ +L Y+ +W
Sbjct: 4 LKFISWNVNGLRAVVKKN-FMEFFEQQDADFFCIQETKLQAGQI----ELTLPGYYQYWN 58
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL V YG+ GV+ +Q GR+IT ++K F +T Y PNS KLK
Sbjct: 59 YAERKGYSGTAIFTKHEPLNVTYGM-GVAEHDQEGRLITLEYKDFYLLTCYTPNSQTKLK 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI S L +I GDLNV + IDL N N AG++ EER
Sbjct: 118 RLDYRMSWEDAFRSYI-STLNQKKPVIFCGDLNVAHEPIDLKNDKTNHHNAGFSDEERAK 176
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL G D+FR+ YPD+ Y++WS+R +AR NN GWR+DY + ++QL + D
Sbjct: 177 FSQLLSAGFTDSFRYFYPDQV-TYSWWSYR-FNARQNNAGWRIDYFVTADQLQPQLADAA 234
Query: 309 IRSDVQGSTHCPVVL 323
I +DV GS HCPV+L
Sbjct: 235 ILTDVLGSDHCPVML 249
>gi|257897862|ref|ZP_05677515.1| AP endonuclease [Enterococcus faecium Com15]
gi|257835774|gb|EEV60848.1| AP endonuclease [Enterococcus faecium Com15]
Length = 250
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 151/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E+ E + D LQ+ + Q ++ L Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVNKN-FLEFFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + KE L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAERKGYSGTAIFAKEPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q+IDL N N K AG+T EER
Sbjct: 116 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAAL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ LA + D I
Sbjct: 175 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLAPRLADAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HTDIMGSDHCPVELDL 249
>gi|251794788|ref|YP_003009519.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
gi|247542414|gb|ACS99432.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
Length = 258
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 150/256 (58%), Gaps = 8/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V K ++Y E + D LQ+ + QE ++ ++ YH+FW
Sbjct: 1 MKFVSWNVNGLRASVNK-GFLDYFNEMDADFFCLQETKLQEGQIKLELGEA---YHLFWH 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGV-SNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KPL++ YG+ + GRVIT +++ F +TVY PN+ L
Sbjct: 57 YAEKKGYSGTAIFTKHKPLSISYGLGEEDEDTEGRVITLEYENFYLVTVYTPNARRDLSR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+DFR+ W++ F Y+ +L + +I+ GDLNV Q IDL N N +G+T EER
Sbjct: 117 LDFRLAWEEMFRGYL-IKLDEHKPVIVCGDLNVAHQDIDLKNAKSNRGNSGFTDEEREKM 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D+FR+LYPD AYT+WSF K R N GWR+DY L S +LA I + I
Sbjct: 176 TRLLDAGFIDSFRYLYPDRTDAYTWWSFMPK-IRERNVGWRIDYFLASARLAPAIVEAGI 234
Query: 310 RSDVQGSTHCPVVLRL 325
S + GS HCPVVL L
Sbjct: 235 DSQILGSDHCPVVLTL 250
>gi|374604001|ref|ZP_09676972.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
gi|374390357|gb|EHQ61708.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
Length = 264
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 149/255 (58%), Gaps = 7/255 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K ++Y + DI +Q+ + QE ++ +S Y +W
Sbjct: 1 MKLISWNVNGLRACVNK-GFIDYFKASDADIFCVQETKLQEGQICLELGES---YRQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + T+ +PL+V+YG+ GR+IT +F+ F +TVY PN+ L +
Sbjct: 57 YAEKKGYSGTAVFTRIEPLSVRYGMEEDREPEGRMITLEFESFYLVTVYTPNAKRDLSRL 116
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
++R+ W++ F Y+Q EL + +I+ GDLNV Q +DL N N +G+T EER
Sbjct: 117 EYRLEWEERFRRYLQ-ELDARKPVIVCGDLNVAHQEMDLKNAKSNHGNSGFTPEERDKMT 175
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
LLD G D FRH YPD AYT+WSF K R N GWR+DY LVS +L IKD I
Sbjct: 176 RLLDAGFTDTFRHRYPDRTDAYTWWSFMPK-VRERNIGWRIDYFLVSARLKEYIKDAEID 234
Query: 311 SDVQGSTHCPVVLRL 325
+ + GS HCPV+L +
Sbjct: 235 AAITGSDHCPVILEM 249
>gi|422344654|ref|ZP_16425579.1| exodeoxyribonuclease [Selenomonas noxia F0398]
gi|355376723|gb|EHG23965.1| exodeoxyribonuclease [Selenomonas noxia F0398]
Length = 250
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 151/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++ +WNVNGLRA +KK +E E N D+ LQ+ + QE + + + F+
Sbjct: 1 MRFVSWNVNGLRAALKK-GFMESFKELNADVFCLQETKMQEGQ---AILDLPGYEQYFYS 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+ KPL+V YGI G+ + GRVIT + +TVY PN+ L+
Sbjct: 57 AEKKGYSGTAIFTRVKPLSVSYGI-GIEEHDNEGRVITMELPDVYLVTVYTPNAKRALER 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F ++ +LR+ +++ GDLNV IDL NP N + AG+T EER F
Sbjct: 116 LDYRMAWEDSFRAFLL-DLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL G VD FR LYPD+ GAYT+WS+ + AR N GWR+DY LVSE+L + I I
Sbjct: 175 GELLAAGFVDTFRALYPDKTGAYTWWSYL-RHARETNAGWRIDYFLVSEELRDRISAAEI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+DV GS HCPV L L
Sbjct: 234 HADVFGSDHCPVSLTL 249
>gi|160933576|ref|ZP_02080964.1| hypothetical protein CLOLEP_02430 [Clostridium leptum DSM 753]
gi|156867453|gb|EDO60825.1| exodeoxyribonuclease III [Clostridium leptum DSM 753]
Length = 261
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/271 (41%), Positives = 162/271 (59%), Gaps = 17/271 (6%)
Query: 60 HEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESF 119
HE+G ++ +WNVNGLRAC+ K E+ + + DI LQ+ + Q+ +V
Sbjct: 5 HEKGD-----YPMRFISWNVNGLRACLTK-GFPEFFQQIDADIFCLQETKLQQGQV---- 54
Query: 120 RKSLSHYHMFWIGS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFI 176
L Y +W + KG G + +K++PL+V YG+ G+ +Q GRVIT +F F
Sbjct: 55 EMVLPGYRQYWNSAVKKGYSGTAVFSKKEPLSVSYGL-GIEEHDQEGRVITLEFPAFYLT 113
Query: 177 TVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV 236
TVY PNS LK + +RM W+ F DY++ L S +++ GD+NV Q IDL NP N
Sbjct: 114 TVYTPNSQEGLKRLSYRMEWEDAFRDYLKG-LDSKKPVVVCGDMNVAHQEIDLKNPKTNR 172
Query: 237 KTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLV 296
K AG+T EER F +LL G +D++R LYP E+ Y++WS+R +AR NN GWR+DY LV
Sbjct: 173 KNAGFTDEERERFSQLLAAGFIDSYRSLYP-EKIEYSWWSYRF-NARKNNAGWRIDYFLV 230
Query: 297 SEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
S+++ I+D I + V GS HCPV L L +
Sbjct: 231 SDRIGGRIQDAKIHTQVMGSDHCPVELDLDI 261
>gi|212694611|ref|ZP_03302739.1| hypothetical protein BACDOR_04139 [Bacteroides dorei DSM 17855]
gi|237711123|ref|ZP_04541604.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|265750710|ref|ZP_06086773.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|345515228|ref|ZP_08794734.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|423228072|ref|ZP_17214478.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|423239233|ref|ZP_17220349.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
gi|423243335|ref|ZP_17224411.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|212663112|gb|EEB23686.1| exodeoxyribonuclease III [Bacteroides dorei DSM 17855]
gi|229434345|gb|EEO44422.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|229454967|gb|EEO60688.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|263237606|gb|EEZ23056.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|392637108|gb|EIY30983.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|392645342|gb|EIY39070.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|392647020|gb|EIY40726.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
Length = 252
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 152/259 (58%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRAC K + E D LQ+ + QE ++ F Y +W
Sbjct: 2 LKFISWNVNGLRACYDKGFADAFNRLE-ADFFCLQETKMQEGQLDVQFEG----YQSYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K KPL+V YG+ G+ + GRVIT + + + ITVY PNS +L+
Sbjct: 57 YAEKKGYSGTAIFSKVKPLSVTYGL-GIEEHDHEGRVITLELESYYLITVYTPNSQEELR 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM WD F Y++ +L +I+ GDLNV + IDL NP N K AG+T EER
Sbjct: 116 RLDYRMKWDDDFRAYLK-KLEEKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL++G D FR+ YP++EG Y++WS+R K AR N GWR+DY L S+ L + ++
Sbjct: 175 FTTLLESGFTDTFRYFYPEQEGIYSWWSYRFK-AREKNAGWRIDYFLTSDSLKDKLRGAQ 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV L + L
Sbjct: 234 IHTDILGSDHCPVELTIEL 252
>gi|329768092|ref|ZP_08259601.1| exodeoxyribonuclease III [Gemella haemolysans M341]
gi|328838247|gb|EGF87859.1| exodeoxyribonuclease III [Gemella haemolysans M341]
Length = 254
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K ++NVNGLRA V KN E + + D LQ+ + Q ++ F +Y F
Sbjct: 1 MKCISFNVNGLRAIVGKN-FEEDFKKLDADFFCLQETKMQAGQLDLQFN---GYYSYFNY 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK +P+ V YGI G+ + GRVIT ++ +F FITVY PNSG +LK
Sbjct: 57 AERKGYSGTAIYTKHEPINVTYGI-GIEEHDTEGRVITLEYDKFFFITVYTPNSGSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W++ F +Y+ EL I++ GDLNV IDL NP N K AG+T EER F
Sbjct: 116 LEYRMSWEEDFKNYLL-ELNKTKGIVVCGDLNVAHTEIDLKNPKSNTKNAGFTQEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LLD G +D FR+ PD GAY++WS+R +AR NN GWR+DY LVS L ++ I
Sbjct: 175 TKLLDAGFIDTFRYYNPDLTGAYSWWSYR-FNARKNNAGWRIDYFLVSRDLEKYLESAAI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+++ GS HCPV L L
Sbjct: 234 HNEIFGSDHCPVELVL 249
>gi|320529778|ref|ZP_08030856.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
gi|320138017|gb|EFW29921.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
Length = 250
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/257 (44%), Positives = 149/257 (57%), Gaps = 9/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++ +WNVNGLRA +KK +E E + D LQ+ + QE + + + F+
Sbjct: 1 MRFVSWNVNGLRAALKK-GFMESFKELDADAFCLQETKMQEGQ---AILDLPGYEQYFYS 56
Query: 132 GSDKGQGGVGLLTKEKPLTVK--YGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+ KPL+V GIP N+ GRVIT +F +TVY PNS L
Sbjct: 57 AEKKGYSGTAIFTRVKPLSVARGIGIPQHDNE-GRVITMEFDDLYLVTVYTPNSQNALAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F ++ ELRS +++ GDLNV IDL NP N + AG+T EER F
Sbjct: 116 LDYRMAWEDAFRSFLL-ELRSKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL G VD FR LYPD+ GAYT+WS+ + AR N GWR+DY LVSE+L I I
Sbjct: 175 GELLAAGFVDTFRALYPDKVGAYTWWSYL-RHARETNAGWRIDYFLVSEELRGRIAAAEI 233
Query: 310 RSDVQGSTHCPVVLRLS 326
+DV GS HCPV L LS
Sbjct: 234 HADVFGSDHCPVSLTLS 250
>gi|224543695|ref|ZP_03684234.1| hypothetical protein CATMIT_02905 [Catenibacterium mitsuokai DSM
15897]
gi|224523348|gb|EEF92453.1| exodeoxyribonuclease III [Catenibacterium mitsuokai DSM 15897]
Length = 248
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 157/257 (61%), Gaps = 13/257 (5%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNG+RAC+KK +E + DI ALQ+ + Q+D++ + Y ++
Sbjct: 1 MKYVSWNVNGIRACLKK-GFLESFKSLDADIFALQETKAQKDQID----LDIPGYTLYTN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G +LT+ KPL+V YGI G+ +Q GRVIT +F+ + F+ Y PNS +L
Sbjct: 56 DAIKKGYSGTAILTRMKPLSVSYGI-GIEEYDQEGRVITLEFEDYYFVPCYTPNSKKELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
ID+RM W+ F Y+ + N +I+ GDLNV IDL NP N AG++ +ER
Sbjct: 115 RIDYRMEWEDAFLAYLDA---LNKPVILCGDLNVAHHEIDLKNPSSNHHNAGFSDQERSK 171
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL G +D FR+LYPD++ AYT+WS+ KS R N GWR+DY +VSE L IK+ +
Sbjct: 172 MTELLSHGYIDTFRYLYPDKKDAYTWWSYMFKS-RERNAGWRIDYFIVSESLKERIKESL 230
Query: 309 IRSDVQGSTHCPVVLRL 325
I SD+ GS HCP+ L +
Sbjct: 231 IYSDILGSDHCPIGLEM 247
>gi|291457988|ref|ZP_06597378.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291419320|gb|EFE93039.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 272
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 154/257 (59%), Gaps = 9/257 (3%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRA + K ++ + D+ LQ+ + QE + SL YH +W
Sbjct: 4 KLISWNVNGLRAVLGKTFLSDF-HALDADVFCLQETKLQEGQA----ELSLPDYHQYWNY 58
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G L +KE+PL+V YGI + R GRVI+A+F +TVYVPNS +L+ +
Sbjct: 59 AEKKGYSGTALFSKEEPLSVSYGIGIPEHDREGRVISAEFPDCYILTVYVPNSQNELQRL 118
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+RM W+ F +YI S L +I GDLNV Q IDL NP N AG+T +ER F
Sbjct: 119 SYRMEWEDAFREYILS-LEEKKPVIYCGDLNVAHQEIDLKNPASNHHNAGFTDDERAKFS 177
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
LLD G +D+FR L+P+E AY++WS+R K AR N GWR+DY +VSE+L I+ I
Sbjct: 178 RLLDCGYLDSFRFLHPEERDAYSWWSYRTK-ARERNVGWRIDYFVVSEKLRERIRGASIH 236
Query: 311 SDVQGSTHCPVVLRLSL 327
++ GS HCPV L L++
Sbjct: 237 PEIMGSDHCPVELDLAV 253
>gi|198276716|ref|ZP_03209247.1| hypothetical protein BACPLE_02915 [Bacteroides plebeius DSM 17135]
gi|198270241|gb|EDY94511.1| exodeoxyribonuclease III [Bacteroides plebeius DSM 17135]
Length = 252
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 152/252 (60%), Gaps = 9/252 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC K + + + D LQ+ + QE ++ SF S+++
Sbjct: 2 IKLISWNVNGLRACCDK-GFRDIFTQLDADFFCLQETKMQEGQLDLSFEGYTSYWNY--- 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK +PL V YG+ G+ + GRVIT + ++F +TVY PNS LK
Sbjct: 58 AEKKGYSGTAIFTKHQPLQVTYGL-GIDEHDHEGRVITLEMEKFFLVTVYTPNSQDGLKR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM WD F Y+Q +L + +++ GDLNV + IDL NP N AG+T +ER F
Sbjct: 117 LDYRMTWDDDFRAYLQ-KLDQSKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ LLD G +D FR+ YP++ Y++WS+R K AR N GWR+DY L S LA+ +K+ I
Sbjct: 176 QLLLDAGFIDTFRYFYPEQTNIYSWWSYRFK-AREKNAGWRIDYFLASASLADKLKEAKI 234
Query: 310 RSDVQGSTHCPV 321
+++ GS HCPV
Sbjct: 235 HTEIFGSDHCPV 246
>gi|160879133|ref|YP_001558101.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
gi|160427799|gb|ABX41362.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
Length = 250
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 102/257 (39%), Positives = 155/257 (60%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACV+K C ++ E + DI +Q+ + Q ++ F Y+ +W
Sbjct: 1 MKLISWNVNGIRACVQKGFC-DFFKEVDADIFCIQESKLQAGQIELDFEG----YYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL V YG+ G+ ++ GRVIT +F+ F +TVY PNS +L
Sbjct: 56 YAEKKGYSGTAIFTKKEPLQVTYGM-GIEEHDKEGRVITLEFEDFYMVTVYTPNSQNELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F +++ +L +++ GDLNV + IDL NP+ N AG+T+EER
Sbjct: 115 RLSYRMEWEDEFRRFLK-KLEETKPVVVCGDLNVAHKEIDLKNPNTNQMNAGFTIEERTK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G +D FR+ YPD Y++WS+R K AR N GWR+DY L S+ L + +
Sbjct: 174 FSELLEAGFIDTFRYFYPDAMDMYSWWSYRFK-AREKNTGWRIDYFLASQGLESKLVSAK 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I S + GS HCP+ L +
Sbjct: 233 IHSQILGSDHCPIELEI 249
>gi|241888975|ref|ZP_04776279.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
gi|241864224|gb|EER68602.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
Length = 254
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 154/256 (60%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K ++NVNGLRA V KN E + + D LQ+ + Q ++ F +Y F
Sbjct: 1 MKCISFNVNGLRAIVGKN-FEEDFKQLDADFFCLQETKMQAGQLDLQFD---GYYSYFNY 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK +PL V YGI G+ + GRVIT ++ +F FITVY PNSG +LK
Sbjct: 57 AERKGYSGTAIYTKHEPLNVTYGI-GIEEHDTEGRVITLEYDKFFFITVYTPNSGSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W++ F +Y+ + L +++ GDLNV IDL NP N+K AG+T EER F
Sbjct: 116 LEYRMSWEEDFKNYLLA-LNKTKGVVVCGDLNVAHTEIDLKNPKSNMKNAGFTPEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LLD G +D FR+ PD GAY++WS+R +AR NN GWR+DY LVS L ++ I
Sbjct: 175 TKLLDAGFIDTFRYYNPDLTGAYSWWSYR-FNARKNNAGWRIDYFLVSRDLEEYLESAAI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+++ GS HCPV L L
Sbjct: 234 HNEIFGSDHCPVELVL 249
>gi|390455653|ref|ZP_10241181.1| exodeoxyribonuclease III [Paenibacillus peoriae KCTC 3763]
Length = 254
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 147/255 (57%), Gaps = 7/255 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K Y+ E NPDI +Q+ + QE ++ +++ Y +W
Sbjct: 1 MKLISWNVNGLRACVTK-GFYTYLKETNPDIFCVQETKLQEGQI---LMENMEEYTQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + TK KPL+V YG+ GR IT +F++F + VY PN+ L +
Sbjct: 57 YAEKKGYSGTAIFTKIKPLSVHYGLEENGEPEGRTITLEFEKFYLVNVYTPNTKRDLSRL 116
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+R+ W+ F Y+Q +L ++ +II GDLNV Q IDL N N AG+T EER
Sbjct: 117 PYRLEWEDRFRSYLQ-QLDASKPVIICGDLNVAHQEIDLKNAKANYGNAGFTPEERERMS 175
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+LL G +D FRH YPD Y++WS+ K R N GWR+DY LVS++L + D I
Sbjct: 176 QLLGAGFIDTFRHFYPDRTEVYSWWSYMPK-VRERNIGWRIDYFLVSDRLRPLLIDASID 234
Query: 311 SDVQGSTHCPVVLRL 325
+ GS HCPV+L +
Sbjct: 235 CHITGSDHCPVILDM 249
>gi|330836714|ref|YP_004411355.1| exodeoxyribonuclease III [Sphaerochaeta coccoides DSM 17374]
gi|329748617|gb|AEC01973.1| exodeoxyribonuclease III Xth [Sphaerochaeta coccoides DSM 17374]
Length = 252
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/257 (42%), Positives = 147/257 (57%), Gaps = 9/257 (3%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K +WNVNG+R+C+ K ++Y + DI LQ+ + QE + L YH +W
Sbjct: 3 KFVSWNVNGIRSCLGK-GFLDYFFSTDADIFCLQETKLQEGQ----HDIELPDYHQYWNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGI-PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G L +KEKP+ V +GI P + + GRVITA++ + + VY PNS +L +
Sbjct: 58 AQKKGYSGTALFSKEKPVRVTFGIAPFIEDAEGRVITAEYPAYFLVCVYTPNSQRELLRL 117
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+RM WD F YI S L + + + GDLNV + IDL NP NV+ AG+T EER F
Sbjct: 118 DYRMKWDDAFRAYILS-LEAMKPVFVCGDLNVAHKEIDLKNPKSNVRNAGFTQEERDKFS 176
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
LD G D+FRHLYP Y++WS+ +AR N GWR+DY L S + A+ I D +I
Sbjct: 177 LFLDAGFTDSFRHLYPHVIDRYSWWSYM-ANARAKNIGWRIDYWLTSNRYADKIHDSLID 235
Query: 311 SDVQGSTHCPVVLRLSL 327
+ GS H PV L L L
Sbjct: 236 DHIPGSDHAPVALLLDL 252
>gi|333394549|ref|ZP_08476368.1| exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 257
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/255 (42%), Positives = 154/255 (60%), Gaps = 12/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN +E+ +++ D +Q+ + Q ++ +L Y+ +W
Sbjct: 4 LKFISWNVNGLRAVVKKN-FMEFFEQQDADFFCIQETKLQAGQI----ELTLPGYYQYWN 58
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL V YG+ GV+ +Q GR+IT ++K F +T Y PNS KLK
Sbjct: 59 YAERKGYSGTAIFTKHEPLNVTYGM-GVAEHDQEGRLITLEYKDFYLLTCYTPNSQTKLK 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YI S L +I GDLNV + IDL N N AG++ EER
Sbjct: 118 RLDYRMSWEDAFRSYI-STLNQKKPVIFCGDLNVAHEPIDLKNDKTNHHNAGFSDEERAK 176
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL G D+FR+ YPD+ Y++WS+R +AR NN GWR+DY + ++QL + D
Sbjct: 177 FSQLLAAGFTDSFRYFYPDQV-TYSWWSYR-FNARQNNAGWRIDYFVTADQLQPQLADAA 234
Query: 309 IRSDVQGSTHCPVVL 323
I +DV GS HCPV+L
Sbjct: 235 ILTDVLGSDHCPVML 249
>gi|328870805|gb|EGG19178.1| transcription factor IIIC-gamma subunit [Dictyostelium
fasciculatum]
Length = 1238
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ ++K+ +WNV G AC KK +Y+++E PDI+ LQ+ + +VP+S YH
Sbjct: 112 SNQIKIVSWNVAGFGACTKK-GFKDYLIKEQPDIVCLQETKIAVAKVPKSEIPEGYTYHF 170
Query: 129 FWIGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI- 185
G G LLTK KP+++ GI G+S +Q GRV+TA+F+ F + YVPNSG+
Sbjct: 171 NPCIEKTGHHGTALLTKIKPISITSGI-GISKHDQEGRVVTAEFEDFYVVNAYVPNSGVD 229
Query: 186 ---KLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGY 241
LK + +R WD F+ Y+ S+L + ++ GDLNV IDLANP N +TAG+
Sbjct: 230 RKEPLKRLGYRTKEWDVDFFKYM-SDLNTKKPVVWCGDLNVAHTEIDLANPKSNSRTAGF 288
Query: 242 TVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLA 301
T+EER +F L++G +D RH P + G YT+WS+ AR N GWRLDY +V
Sbjct: 289 TIEERTSFSGHLNSGFIDTHRHFNPGKTGTYTFWSYMG-GARAKNAGWRLDYFIVPATFI 347
Query: 302 NNIKDCIIRSDVQGSTHCPV 321
+I IRS VQGS HCP+
Sbjct: 348 GSIAASFIRSKVQGSDHCPI 367
>gi|313895351|ref|ZP_07828908.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976246|gb|EFR41704.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 250
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/257 (44%), Positives = 149/257 (57%), Gaps = 9/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++ +WNVNGLRA +KK +E E + D LQ+ + QE + + + F+
Sbjct: 1 MRFVSWNVNGLRAALKK-GFMESFKELDADAFCLQETKMQEGQ---AILDLPGYEQYFYS 56
Query: 132 GSDKGQGGVGLLTKEKPLTVK--YGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+ KPL+V GIP N+ GRVIT +F +TVY PNS L
Sbjct: 57 AEKKGYSGTAIFTRVKPLSVARGIGIPQHDNE-GRVITMEFDDLYLVTVYTPNSQNALAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F ++ ELRS +++ GDLNV IDL NP N + AG+T EER F
Sbjct: 116 LDYRMAWEDAFRAFLL-ELRSKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL G VD FR LYPD+ GAYT+WS+ + AR N GWR+DY LVSE+L I I
Sbjct: 175 GELLAAGFVDTFRALYPDKVGAYTWWSYL-RHARETNAGWRIDYFLVSEELRGRIAAAEI 233
Query: 310 RSDVQGSTHCPVVLRLS 326
+DV GS HCPV L LS
Sbjct: 234 HADVFGSDHCPVSLTLS 250
>gi|384046695|ref|YP_005494712.1| exodeoxyribonuclease III [Bacillus megaterium WSH-002]
gi|345444386|gb|AEN89403.1| Exodeoxyribonuclease III [Bacillus megaterium WSH-002]
Length = 253
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 157/257 (61%), Gaps = 8/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACV+K ++Y E N D+ +Q+ + QE ++ L Y+ +W
Sbjct: 1 MKLISWNVNGIRACVRK-GFLDYFQEVNADVFCIQETKLQEGQID----LQLEGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + TK+KPL+V YG+ S GR+IT +F++ + VY PNS L +
Sbjct: 56 YAVKKGYSGTAVFTKQKPLSVSYGVDKESEDEGRIITLEFEQCYVVNVYTPNSKRDLARL 115
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+ R+ W+ Y+ ++L S +I+ GDLNV IDL NP N +G+T+EER
Sbjct: 116 EERLQWEDDLLVYL-NKLNSRKAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMT 174
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
LL +G +D FR+LYP++E AYT+WS+ NK R N GWR+DY +VSE++ + I++ I
Sbjct: 175 TLLASGFLDTFRYLYPNQEEAYTWWSYMNK-VRERNIGWRIDYFIVSERIKDVIQEATIH 233
Query: 311 SDVQGSTHCPVVLRLSL 327
V GS HCPV+L L++
Sbjct: 234 PHVMGSDHCPVMLELNV 250
>gi|220930682|ref|YP_002507591.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
gi|220001010|gb|ACL77611.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
Length = 253
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 108/257 (42%), Positives = 158/257 (61%), Gaps = 9/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
K+ +WNVNGLRAC+ K ++ E + DI +Q+ + QE +V + L Y +W
Sbjct: 2 TKLVSWNVNGLRACIGKGFW-DFFKEVDSDIFCIQETKLQEGQV--ELEQELEGYEQYWN 58
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK KP++ GI G+ + GRVIT +F ++ + VY PNS +L+
Sbjct: 59 YAVKKGYSGTAIFTKIKPVSSSCGI-GIEEHDNEGRVITLEFDQYFLVNVYTPNSKRELE 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F Y++ +L +II GD+NV + ID+ NP N ++AG+T+EER
Sbjct: 118 RLEYRMKWEDDFRIYLK-QLEETKPVIICGDMNVAHKEIDIKNPRSNKRSAGFTMEEREK 176
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G VD++R LYPD+ GAYT+WS+ K AR N GWR+DY VSE L N I++
Sbjct: 177 FSELLEQGFVDSYRTLYPDKTGAYTWWSYMFK-ARERNVGWRIDYFCVSEVLKNIIEEAD 235
Query: 309 IRSDVQGSTHCPVVLRL 325
I S++ GS HCPV L +
Sbjct: 236 IYSEIMGSDHCPVGLTI 252
>gi|254168985|ref|ZP_04875824.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197622091|gb|EDY34667.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 158/254 (62%), Gaps = 7/254 (2%)
Query: 76 TWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSD 134
+WNVNG+RACV+ N ++++ + PDI+ALQ+I+ ED VP R YH +W
Sbjct: 7 SWNVNGIRACVR-NGFLDFLEKYKPDILALQEIKATEDNVPMEVR-YYPDYHKYWNPAKK 64
Query: 135 KGQGGVGLLTKEKPLTVKYGI-PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFR 193
KG G L TK +PL VK+GI + GRVITA++++F + Y PNS L +DF+
Sbjct: 65 KGYAGTALFTKIEPLNVKFGIGEDKFDSEGRVITAEYEKFYLVNAYFPNSQHGLTRLDFK 124
Query: 194 MIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELL 253
+ +D+ + Y+ +ELR +I+ GD NV + IDLANP +NVK AG+T +ER + L
Sbjct: 125 IEFDKLIHSYL-NELRKKKPVILCGDFNVAHKEIDLANPKQNVKNAGFTPQERAWMDKFL 183
Query: 254 DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDV 313
G +D FR ++ E G YT+W++R K AR N GWR+DY +VSE+L + +K I S+V
Sbjct: 184 QDGYIDTFR-MFTKEGGHYTWWTYRFK-ARERNIGWRVDYFVVSEELKDKVKSSWILSEV 241
Query: 314 QGSTHCPVVLRLSL 327
GS H P+ + L +
Sbjct: 242 YGSDHAPIAMVLDI 255
>gi|227498619|ref|ZP_03928763.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904075|gb|EEH89993.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 251
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ TWNVNGLRAC+ K E + + + DI+++Q+ + Q ++ F Y+ +W
Sbjct: 1 MKLVTWNVNGLRACMNK-GFKESMEKLDADIISIQETKMQREQASFDF----PGYYEYWN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + ++ KPL+V YG+ G+ +Q GRVITA++ F + VY PNS +L
Sbjct: 56 SAVKKGYSGTAIFSRIKPLSVTYGL-GIEEHDQEGRVITAEYDDFYLVNVYTPNSQRELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y + +L I+ GD+NV + IDL NPD N AG++ EER+
Sbjct: 115 RLSYRMAWEDAFQAYCE-DLSKKKTTIVCGDMNVAHEPIDLKNPDSNHHNAGFSDEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
L G VD+FR LYPD EGAYT+WS+ K AR N GWR+DY LVSE + I+D
Sbjct: 174 LDAFLARGFVDSFRMLYPDREGAYTWWSYMFK-ARERNAGWRIDYFLVSEAGRDKIRDVT 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCPVVL +
Sbjct: 233 IMNEIMGSDHCPVVLEYGV 251
>gi|304438523|ref|ZP_07398463.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368606|gb|EFM22291.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 250
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 151/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++ +WNVNGLRA +KK +E E + D LQ+ + QE + + + F+
Sbjct: 1 MRFVSWNVNGLRAALKK-GFMEAFKELDADAFCLQETKMQEGQ---AILDLPGYEQYFYS 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+ KPL+V YGI G+ + GRVIT +F +TVY PN+ L+
Sbjct: 57 AEKKGYSGTAIFTRVKPLSVAYGI-GIPEHDHEGRVITMEFNDVYLVTVYTPNAKRALER 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F ++ +LR+ +++ GDLNV IDL NP N + AG+T EER F
Sbjct: 116 LDYRMTWEDAFRAFLL-DLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G VD FR LYPD GAYT+WS+ + AR N GWR+DY LVSE+L + I I
Sbjct: 175 TELLNAGFVDTFRALYPDLTGAYTWWSYL-RHARETNAGWRIDYFLVSEELRDRIAAAEI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+DV GS HCPV L L
Sbjct: 234 HADVFGSDHCPVSLTL 249
>gi|352683918|ref|YP_004895902.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
gi|350278572|gb|AEQ21762.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
Length = 258
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ TWNVNGLRAC+ K E + + + DI+++Q+ + Q ++ F Y+ +W
Sbjct: 8 MKLVTWNVNGLRACMNK-GFKESMEKLDADIISIQETKMQREQASFDF----PGYYEYWN 62
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + ++ KPL+V YG+ G+ +Q GRVITA++ F + VY PNS +L
Sbjct: 63 SAVKKGYSGTAIFSRIKPLSVTYGL-GIEEHDQEGRVITAEYDDFYLVNVYTPNSQRELA 121
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y + +L I+ GD+NV + IDL NPD N AG++ EER+
Sbjct: 122 RLSYRMAWEDAFQAYCE-DLSKKKTTIVCGDMNVAHEPIDLKNPDSNHHNAGFSDEERQK 180
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
L G VD+FR LYPD EGAYT+WS+ K AR N GWR+DY LVSE + I+D
Sbjct: 181 LDAFLARGFVDSFRMLYPDREGAYTWWSYMFK-ARERNAGWRIDYFLVSEAGRDKIRDVT 239
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCPVVL +
Sbjct: 240 IMNEIMGSDHCPVVLEYGV 258
>gi|403071080|ref|ZP_10912412.1| exodeoxyribonuclease [Oceanobacillus sp. Ndiop]
Length = 253
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACVKK ++Y E + DI +Q+ + QE ++ L YH +W
Sbjct: 1 MKLVSWNVNGIRACVKK-GFLDYFNEIDADIFCIQESKLQEGQI----NLELDGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK+KPL V+YG+ NQ GR+IT +F F + VY PNS L
Sbjct: 56 YAIRKGYSGTAVFTKKKPLHVRYGLGKEDNQEEGRIITLEFNEFFLVNVYTPNSKRDLTR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W+ Y Y++ EL +I GDLNV Q IDL N N +G+T +ER
Sbjct: 116 LDYRLEWEDELYSYLR-ELDEEKPVIYCGDLNVAHQEIDLKNHKTNHGNSGFTAQERGKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD+G VD RH +PD+EG Y++WS+ K+ R N GWR+DY +VS++L +K+ +
Sbjct: 175 TRLLDSGFVDTLRHFHPDKEGIYSWWSYM-KTIRERNIGWRIDYFIVSKRLVPYLKNSDV 233
Query: 310 RSDVQGSTHCPVVLRL 325
S V GS HCPV L +
Sbjct: 234 HSLVMGSDHCPVALDM 249
>gi|253574957|ref|ZP_04852296.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845413|gb|EES73422.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 251
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 105/253 (41%), Positives = 147/253 (58%), Gaps = 7/253 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K ++Y E + DI LQ+ + QE ++ S Y +W
Sbjct: 1 MKLVSWNVNGLRACVGK-GFLDYFKEADADIFCLQETKLQEGQIELDLG---SEYEQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + T+ KPL+V+YG+ GR+IT +F++F +TVY PN+ L +
Sbjct: 57 YAEKKGYSGTAVFTRIKPLSVRYGMEEDYEPEGRIITLEFEQFYLVTVYTPNAKRDLSRL 116
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+RM W+ F Y+ L + +I+ GDLNV ID+ N N +GYT+EER
Sbjct: 117 DYRMEWEDRFRTYLTG-LDAVKPVIVCGDLNVAHNPIDIKNAKSNEGNSGYTLEERGKMT 175
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
ELL +G +D FRH YPD EG Y++WS+ K R N GWR+DY L S +LA ++D I
Sbjct: 176 ELLASGFIDTFRHFYPDREGVYSWWSYMPK-IRERNIGWRIDYFLASSRLAPKLQDAGID 234
Query: 311 SDVQGSTHCPVVL 323
+ GS HCPV L
Sbjct: 235 CHILGSDHCPVSL 247
>gi|254166764|ref|ZP_04873618.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289596498|ref|YP_003483194.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197624374|gb|EDY36935.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289534285|gb|ADD08632.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 107/254 (42%), Positives = 158/254 (62%), Gaps = 7/254 (2%)
Query: 76 TWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSD 134
+WNVNG+RACV+ N ++++ + PDI+ALQ+I+ ED +P R YH +W
Sbjct: 7 SWNVNGIRACVR-NGFLDFLEKYKPDILALQEIKATEDNIPIEVR-YYPDYHKYWNPAKK 64
Query: 135 KGQGGVGLLTKEKPLTVKYGI-PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFR 193
KG G L TK +PL +K+GI + GRVITA++++F + Y PNS L +DF+
Sbjct: 65 KGYAGTALFTKIEPLNIKFGIGEDKFDSEGRVITAEYEKFYLVNAYFPNSQHGLTRLDFK 124
Query: 194 MIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELL 253
+ +D+ + Y+ +ELR +I+ GD NV + IDLANP +NVK AG+T +ER E L
Sbjct: 125 IEFDKLIHSYL-NELRKKKPVILCGDFNVAHKEIDLANPKQNVKNAGFTPQERAWMDEFL 183
Query: 254 DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDV 313
G +D FR ++ E G YT+W++R K AR N GWR+DY +VSE+L + +K I S+V
Sbjct: 184 QDGYIDTFR-MFTKEGGHYTWWTYRFK-ARERNIGWRVDYFVVSEELKDKVKSSWILSEV 241
Query: 314 QGSTHCPVVLRLSL 327
GS H P+ + L +
Sbjct: 242 YGSDHAPIAMVLDI 255
>gi|225016166|ref|ZP_03705370.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
gi|224951039|gb|EEG32248.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
Length = 253
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 158/257 (61%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC+ K +++ E + D+ +Q+ + Q+ + +L Y FW
Sbjct: 1 MKLISWNVNGLRACLNK-GFLDFFQEADADVFCVQETKMQQGQA----ELALEGYEQFWC 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G G + T+ P++V YGI G+ + GRVIT +F++FT I VY PN+ L
Sbjct: 56 SAEKKGYSGTAVFTRIPPVSVAYGI-GIPEFDTEGRVITVEFEKFTLINVYTPNAQRGLT 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
IDFRM W+ F Y+ L+ + +++ GDLNV IDL N N AG++ EER
Sbjct: 115 RIDFRMQWEDAFRVYLL-RLQESKPVVVCGDLNVAHNEIDLKNYKTNRGNAGFSDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL +GL D+FR+LYP++ G YT+WS+ +AR NN GWR+DY L S+ L + I+D +
Sbjct: 174 MTELLQSGLTDSFRYLYPEKTGCYTWWSYM-FNARANNAGWRIDYFLTSDVLKDQIEDSV 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I S+V GS HCP+ L L
Sbjct: 233 IYSEVLGSDHCPIGLFL 249
>gi|401564907|ref|ZP_10805765.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
gi|400188269|gb|EJO22440.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
Length = 250
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 151/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++ +WNVNGLRA +KK +E E + D LQ+ + QE + + + F+
Sbjct: 1 MRFVSWNVNGLRAALKK-GFMESFKELDADAFCLQETKMQEGQ---AILDLPGYEQYFYS 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+ KPL+V YGI G+ + GRVIT +F+ +TVY PNS L
Sbjct: 57 AEKKGYSGTAIFTRLKPLSVSYGI-GIEEHDNEGRVITMEFEDVYLVTVYTPNSKNGLLR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM+W+ F ++ +LR+ +++ GDLNV IDL NP N + AG+T EER F
Sbjct: 116 LDYRMVWEDAFRAFLL-DLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL G VD FR LYPD GAYT+WS+ + AR N GWR+DY LVSE+L + I I
Sbjct: 175 TELLAAGFVDTFRALYPDLTGAYTWWSYL-RHARETNAGWRIDYFLVSEELRDRIAAAEI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HADIFGSDHCPVSLTL 249
>gi|363896773|ref|ZP_09323322.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
gi|361960338|gb|EHL13587.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
Length = 251
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 12/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRA + KN +E + + DI LQ+ + Q ++ L Y +W
Sbjct: 3 KLISWNVNGLRAVMGKN-FMEDFRKLDADIFCLQETKLQAGQI----ELDLPGYFQYWNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+PL+V YGI GV +Q GRVITA+FK F ITVYVPNS +LK
Sbjct: 58 AVKKGYSGTAIFTKEEPLSVSYGI-GVEEHDQEGRVITAEFKDFYLITVYVPNSQGELKR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM ++ F +YI + L ++ GDLNV + IDL NPD N +AG++ EER F
Sbjct: 117 LPYRMEFEDAFLNYILN-LEKKKPVVYCGDLNVAHEEIDLKNPDTNHLSAGFSDEERAKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LD G +D+FR+ YP++E Y++WS+R K AR N GWR+DY +VS+QL + I
Sbjct: 176 SRVLDNGYLDSFRYFYPEKE-EYSWWSYRTK-ARERNVGWRIDYFVVSKQLEKKLHSASI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
++V GS HCPV L L L
Sbjct: 234 HTEVMGSDHCPVELILDL 251
>gi|374319924|ref|YP_005073053.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
gi|357198933|gb|AET56830.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
Length = 254
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 103/255 (40%), Positives = 147/255 (57%), Gaps = 7/255 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K Y+ E NPDI +Q+ + QE ++ +++ Y +W
Sbjct: 1 MKLISWNVNGLRACVTK-GFYTYLKETNPDIFCVQETKLQEGQI---LMENMEEYTQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + TK KPL+V YG+ GR IT +F++F + VY PN+ L +
Sbjct: 57 YAEKKGYSGTAIFTKIKPLSVHYGLEENGEPEGRTITLEFEKFYLVNVYTPNTKRDLSRL 116
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+R+ W+ F Y+Q +L ++ +I+ GDLNV Q IDL N N AG+T EER
Sbjct: 117 PYRLEWEDRFRSYLQ-QLDASKPVIVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMS 175
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+LL G +D FRH YPD Y++WS+ K R N GWR+DY LVS++L + D I
Sbjct: 176 QLLGAGFIDTFRHFYPDRTEVYSWWSYMPK-VRERNIGWRIDYFLVSDRLRPLLIDASID 234
Query: 311 SDVQGSTHCPVVLRL 325
+ GS HCPV+L +
Sbjct: 235 CHITGSDHCPVILDM 249
>gi|402303594|ref|ZP_10822685.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
gi|400378209|gb|EJP31070.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
Length = 250
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 113/257 (43%), Positives = 149/257 (57%), Gaps = 9/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++ +WNVNGLRA +KK +E E + D LQ+ + QE + + + F+
Sbjct: 1 MRFVSWNVNGLRAALKK-GFMESFKELDADAFCLQETKMQEGQ---AILDLPGYEQYFYS 56
Query: 132 GSDKGQGGVGLLTKEKPLTVK--YGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+ KPL+V GIP N+ GRVIT +F +TVY PNS L
Sbjct: 57 AEKKGYSGTAIFTRVKPLSVARGIGIPQHDNE-GRVITMEFDDLYLVTVYTPNSQNALAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F ++ ELRS +++ GDLNV IDL NP N + AG+T EER F
Sbjct: 116 LDYRMAWEDAFRAFLL-ELRSKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL G VD FR LYPD+ GAYT+WS+ + AR N GWR+DY LVSE+L I I
Sbjct: 175 GELLAAGFVDTFRALYPDKVGAYTWWSYL-RHARETNAGWRIDYFLVSEELRGRIAAAEI 233
Query: 310 RSDVQGSTHCPVVLRLS 326
+D+ GS HCPV L LS
Sbjct: 234 HADIFGSDHCPVSLTLS 250
>gi|357059246|ref|ZP_09120090.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
gi|355372575|gb|EHG19915.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
Length = 250
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 109/255 (42%), Positives = 148/255 (58%), Gaps = 7/255 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++ +WNVNGLRA +KK +E E + D LQ+ + QE + + + F+
Sbjct: 1 MRFVSWNVNGLRAALKK-GFMESFKELDADAFCLQETKMQEGQ---AILDLPGYEQYFYS 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + T+ +PL+V YGI + GRVIT +F +TVY PNS L +
Sbjct: 57 AEKKGYSGTAIFTRIRPLSVNYGIGTPEHDHEGRVITMEFADVYLVTVYTPNSKNALARL 116
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+RM+W+ F ++ +LR+ +++ GDLNV IDL NP N + AG+T EER F
Sbjct: 117 DYRMVWEDAFRAFLL-DLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFT 175
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
ELL+ G VD FR LYPD GAYT+WS+ + AR N GWR+DY LVSE+L I I
Sbjct: 176 ELLNAGFVDTFRALYPDVTGAYTWWSYL-RHARETNAGWRIDYFLVSEELRERIAAAEIH 234
Query: 311 SDVQGSTHCPVVLRL 325
+DV GS HCPV L L
Sbjct: 235 ADVFGSDHCPVSLTL 249
>gi|331702430|ref|YP_004399389.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
gi|329129773|gb|AEB74326.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
Length = 256
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 151/258 (58%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VK + E + + D +Q+ + QE ++ L Y ++
Sbjct: 1 MKFISWNVNGLRAAVKHD-FAETFQQLDADFFCIQETKMQEGQL----ELDLPGYQQYFN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK P+ V YGI + GR IT ++ F +T YVPNSG LK
Sbjct: 56 YAERKGYSGTAIFTKHAPMHVTYGINSDEFDHEGRAITLEYPDFYLVTSYVPNSGAGLKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+DFRM W++ FY Y+ +EL + +I+ GDLNV + I+L NP N AG+T EER++F
Sbjct: 116 LDFRMGWNKAFYQYL-TELDAKKPVILCGDLNVAHKEIELKNPQSNHHNAGFTDEERQDF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL G +D FRH YPD+ Y++WS+R S R N GWR+DY + S +LA+ I+D I
Sbjct: 175 TKLLKAGFMDTFRHFYPDQTDIYSWWSYRFHS-RDRNAGWRIDYFVASNRLADQIEDSKI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
+DV GS HCPV L L
Sbjct: 234 LTDVFGSDHCPVELDTKL 251
>gi|311110171|ref|ZP_07711568.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
gi|311065325|gb|EFQ45665.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
Length = 265
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 157/259 (60%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA ++ + V + + DI A+Q R + +EV + L Y+ +W
Sbjct: 12 MKFMSWNVNGLRAALR-HGFVNTFTDLDADIFAIQDTRVEPNEV----QIDLPGYYQYWN 66
Query: 131 IGSDKGQGGVGLLTKEKPLTVK--YGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKEKP+TV +G+P V + GR IT +F F FI V VP SG KL+
Sbjct: 67 YAKRKGYAGTAVFTKEKPITVANGFGVPEVDGE-GRSITLEFSNFYFIDVQVPFSGEKLQ 125
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+DFR +W Q F +Y+ ++L +II GD++V IDLA PD N + AG+T ER+
Sbjct: 126 RLDFRELWAQTFRNYV-TKLMQYKPVIIGGDMSVAHDKIDLAEPDDNHRHAGFTGIERKE 184
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G +D FR+ +PD E YTYWS+R + AR N GWRLDY LVS L + + +
Sbjct: 185 FSELLNAGFIDTFRYFHPD-EAKYTYWSYR-EDARAKNIGWRLDYFLVSNNLEDKMINAQ 242
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCP+ L L +
Sbjct: 243 ILNNIMGSDHCPIELDLDI 261
>gi|237753149|ref|ZP_04583629.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
gi|229375416|gb|EEO25507.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
Length = 250
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 102/257 (39%), Positives = 161/257 (62%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNGLRAC+ K +E+ N D+ +Q+ + Q ++ F +Y +W
Sbjct: 1 MRLISWNVNGLRACMNK-GFMEFFNSVNADVFCIQESKMQREQAEFDF----PNYEEYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G GV + +K KPL+V+Y + G++ ++ GR+ITA+F F + VY PNS +L+
Sbjct: 56 SAEKKGYSGVAIFSKIKPLSVEYDM-GIAHHDKEGRIITAEFSDFYLVNVYTPNSKRELE 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F ++++ L S +I+ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLEYRMEWEDDFRTFLKN-LESKKPVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LLD+G D +RH YP+++GAYT+WS+ K AR NN GWR+DY L S+ L + +K
Sbjct: 174 MSALLDSGFTDTYRHFYPEKQGAYTWWSYMGK-ARANNTGWRIDYFLCSKILDSRLKSAS 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I ++ GS HCPV + +
Sbjct: 233 IYPEILGSDHCPVGIEI 249
>gi|116630243|ref|YP_815415.1| exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|420148175|ref|ZP_14655447.1| Exonuclease III [Lactobacillus gasseri CECT 5714]
gi|116095825|gb|ABJ60977.1| Exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|398400333|gb|EJN53898.1| Exonuclease III [Lactobacillus gasseri CECT 5714]
Length = 268
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 157/259 (60%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA ++ + V + + DI A+Q R + +EV + L Y+ +W
Sbjct: 15 MKFMSWNVNGLRAALR-HGFVNTFTDLDADIFAIQDTRVEPNEV----QIDLPGYYQYWN 69
Query: 131 IGSDKGQGGVGLLTKEKPLTVK--YGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKEKP+TV +G+P V + GR IT +F F FI V VP SG KL+
Sbjct: 70 YAKRKGYAGTAVFTKEKPITVANGFGVPEVDGE-GRSITLEFSNFYFIDVQVPFSGEKLQ 128
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+DFR +W Q F +Y+ ++L +II GD++V IDLA PD N + AG+T ER+
Sbjct: 129 RLDFRELWAQTFRNYV-TKLMQYKPVIIGGDMSVAHDKIDLAEPDDNHRHAGFTGIERKE 187
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G +D FR+ +PD E YTYWS+R + AR N GWRLDY LVS L + + +
Sbjct: 188 FSELLNAGFIDTFRYFHPD-EAKYTYWSYR-EDARAKNIGWRLDYFLVSNNLEDKMINAQ 245
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCP+ L L +
Sbjct: 246 ILNNIMGSDHCPIELDLDI 264
>gi|253826925|ref|ZP_04869810.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313142047|ref|ZP_07804240.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|253510331|gb|EES88990.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313131078|gb|EFR48695.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
Length = 252
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 158/258 (61%), Gaps = 11/258 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q ++ F +Y +W
Sbjct: 1 MKLISWNVNGLRACMNK-GFMDFFETVNADVFCIQESKMQREQATFDF----PNYEEYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G GV + +K KPL+V Y + G++ ++ GR+I A++K F + VY PNS +L+
Sbjct: 56 SAEKKGYSGVAIFSKTKPLSVAYDM-GIAHHDKEGRIICAEYKDFYLVNVYTPNSKRELE 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+++ L +I+ GDLNV Q IDL NP N + AG+T EER
Sbjct: 115 RLSYRMEWEDDFRAYLKN-LEKTKPVIVCGDLNVAHQEIDLKNPKTNRRNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LLD+G D FRH YP EGAY++WS+ K AR NN GWR+DY L S+ L + + D
Sbjct: 174 MTQLLDSGFTDTFRHFYPTLEGAYSWWSYMGK-ARENNTGWRIDYFLCSKALDSKLLDAK 232
Query: 309 IRSDVQGSTHCPVVLRLS 326
I +V GS HCPV L ++
Sbjct: 233 IYPEVFGSDHCPVGLEIN 250
>gi|328958150|ref|YP_004375536.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
gi|328674474|gb|AEB30520.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
Length = 253
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKK VE E + D LQ+ + QE ++ F Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVKK-GFVEIFEELDADFFCLQETKLQEGQIELDF----PGYYDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KPL V YGI +Q GRVIT + + +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFTKHKPLDVSYGIGKPEHDQEGRVITLSYPNYYVVTCYTPNSKSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y++ +L S +I+ GDLNV ++IDL N N +AG++ EER F
Sbjct: 116 LDYRMQWEDDFQLYLK-KLDSEKPVILCGDLNVAHENIDLKNWKTNQLSAGFSKEERMKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YPD EGAYT+W++R +AR N GWR+DY VS +L +++++ I
Sbjct: 175 SALLDAGFIDTFRYFYPDLEGAYTWWNYRF-NARKTNAGWRIDYFCVSTRLQDHLQEARI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 LDDIVGSDHCPVELIL 249
>gi|282852873|ref|ZP_06262214.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|282555981|gb|EFB61602.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
Length = 254
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 157/259 (60%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA ++ + V + + DI A+Q R + +EV + L Y+ +W
Sbjct: 1 MKFMSWNVNGLRAALR-HGFVNTFTDLDADIFAIQDTRVEPNEV----QIDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVK--YGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKEKP+TV +G+P V + GR IT +F F FI V VP SG KL+
Sbjct: 56 YAKRKGYAGTAVFTKEKPITVANGFGVPEVDGE-GRSITLEFSNFYFIDVQVPFSGEKLQ 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+DFR +W Q F +Y+ ++L +II GD++V IDLA PD N + AG+T ER+
Sbjct: 115 RLDFRELWAQTFRNYV-TKLMQYKPVIIGGDMSVAHDKIDLAEPDDNHRHAGFTGIERKE 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G +D FR+ +PD E YTYWS+R + AR N GWRLDY LVS L + + +
Sbjct: 174 FSELLNAGFIDTFRYFHPD-EAKYTYWSYR-EDARAKNIGWRLDYFLVSNNLEDKMINAQ 231
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCP+ L L +
Sbjct: 232 ILNNIMGSDHCPIELDLDI 250
>gi|456012224|gb|EMF45930.1| Exodeoxyribonuclease III [Planococcus halocryophilus Or1]
Length = 252
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/257 (39%), Positives = 161/257 (62%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KK +++ E N D+ LQ+I+ QE ++ L Y+ +W
Sbjct: 2 LKLISWNVNGLRAVMKK-GFMDFFTEVNADVFCLQEIKLQEGQI----EMDLPGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK+KPL+++YG+ G+ + GR+IT +F + ITVY PNS L
Sbjct: 57 YAHKKGYSGTAIFTKQKPLSIQYGL-GLEELDTEGRIITLEFDNYYVITVYTPNSQHGLL 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R++W+ ++++ L ++ +++ GDLNV + IDL NP N K +G+T+EER
Sbjct: 116 RLDYRLLWEDAILSFVKA-LDNHKPVLLCGDLNVAHEEIDLRNPKANKKNSGFTLEERGK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+ L+ G VD FRH +P+EEG Y++WS+R+ + R N GWR+DY L S++L ++
Sbjct: 175 MTQFLEKGFVDTFRHFHPEEEGHYSWWSYRS-NCREKNVGWRIDYFLASQRLVPALQSAK 233
Query: 309 IRSDVQGSTHCPVVLRL 325
I D+ GS HCPV L++
Sbjct: 234 IHIDIWGSDHCPVELQV 250
>gi|238928084|ref|ZP_04659844.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
gi|238884044|gb|EEQ47682.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
Length = 250
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/256 (42%), Positives = 150/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++ +WNVNGLRA +KK +E E + D LQ+ + QE + + + F+
Sbjct: 1 MRFVSWNVNGLRAALKK-GFMESFRELDADAFCLQETKMQEGQ---AILDLPGYEQYFYS 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+ KPL+V YGI G+S + GRVIT +F +TVY PN+ L+
Sbjct: 57 AEKKGYSGTAIFTRVKPLSVAYGI-GISAHDNEGRVITMEFDDVYLVTVYTPNAKRALER 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM+W+ F ++ LR+ +++ GDLNV IDL NP N + AG+T EER F
Sbjct: 116 LDYRMMWEDAFRAFLLG-LRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL G +D FR LYPD GAYT+WS+ + AR N GWR+DY LVS +L + I I
Sbjct: 175 TELLQAGFIDTFRALYPDRTGAYTWWSYL-RHARETNAGWRIDYFLVSAELRDRIAAAEI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HADIFGSDHCPVSLTL 249
>gi|403234513|ref|ZP_10913099.1| exodeoxyribonuclease III [Bacillus sp. 10403023]
Length = 251
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 154/256 (60%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACVKK ++Y E + DI +Q+ + QE ++ L YH FW
Sbjct: 1 MKLVSWNVNGLRACVKK-GFLDYFHEMDADIFCVQETKLQEGQI----ELDLEGYHQFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK+KPL+V YG+ + + GR++T +F+ F I VY PNS L
Sbjct: 56 YAIKKGYSGTAVFTKKKPLSVSYGVADENEEDEGRILTLEFEDFYLINVYTPNSQRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ FR+ W+ +Y+ +L I++ GDLNV IDL N N +G+T EER
Sbjct: 116 LHFRLNWEDRIREYL-IQLNKLKPIVLCGDLNVAHSDIDLKNAKSNRGNSGFTEEERGKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL++G +D+FR+ YPD YT+WS+ ++ R N GWR+DY +VSE+L + +KD I
Sbjct: 175 TDLLNSGFIDSFRYFYPDMTDKYTWWSYM-RNVREKNIGWRIDYFIVSEELKHRLKDSQI 233
Query: 310 RSDVQGSTHCPVVLRL 325
S V GS HCPVVL++
Sbjct: 234 HSHVMGSDHCPVVLQI 249
>gi|383754456|ref|YP_005433359.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366508|dbj|BAL83336.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 250
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 152/257 (59%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRAC+KK +E + + D+ LQ+ + Q PE L Y +W
Sbjct: 1 MKFISWNVNGLRACLKK-GFMESFCKLDADVFCLQETKMQ----PEQAILDLPGYKQYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G G + ++ +PL V YG+ G+ + GRVIT +F +TVY PNS +L+
Sbjct: 56 SAEKKGYSGTAVFSRIEPLHVTYGL-GIEEHDHEGRVITLEFPEMFLVTVYTPNSKRELE 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +L +I+ GDLNV Q IDL NP N AG+T EER
Sbjct: 115 RLAYRMEWEDAFRAYLM-KLDEQKPVIVCGDLNVAHQEIDLKNPKTNHHNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD G +D FR LYPD G YT+WS+ K AR NN GWR+DY + S++L I+D
Sbjct: 174 FGELLDAGFIDTFRTLYPDRTGIYTWWSYLRK-ARDNNAGWRIDYFVASKRLQEKIQDAT 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +++ GS HCPV L L
Sbjct: 233 IHNEIFGSDHCPVGLEL 249
>gi|260881707|ref|ZP_05405068.2| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
gi|260848221|gb|EEX68228.1| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
Length = 253
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 152/259 (58%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRAC+KK +E ++ + D+ ALQ+ + Q PE L Y +W
Sbjct: 3 MKCISWNVNGLRACLKK-GFMESFVKLDADVFALQETKMQ----PEQAILDLPGYRQYWN 57
Query: 132 GSD-KGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++ KG G + ++ +PL V YG+ G+ + GRVIT +F F+TVY PNS L+
Sbjct: 58 SAERKGYSGTAVFSRIEPLAVTYGL-GIEEHDHEGRVITLEFPDCYFVTVYTPNSKRGLE 116
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ + L + +I+ GDLNV IDL NP N AG+T EER
Sbjct: 117 RLAYRMEWEDAFRAYLVA-LDAKKPVIVCGDLNVAHTEIDLKNPKTNHHNAGFTDEERGK 175
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD G +D FR LYPD G YT+WS+ K AR N GWR+DY + S +L I D
Sbjct: 176 FTELLDAGFIDTFRALYPDRTGIYTWWSYLRK-ARDTNAGWRIDYFVTSARLREKIADAT 234
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I ++V GS HCPV L L L
Sbjct: 235 IHNEVFGSDHCPVGLELRL 253
>gi|257886665|ref|ZP_05666318.1| AP endonuclease [Enterococcus faecium 1,141,733]
gi|257895240|ref|ZP_05674893.1| AP endonuclease [Enterococcus faecium Com12]
gi|293377228|ref|ZP_06623433.1| exodeoxyribonuclease III [Enterococcus faecium PC4.1]
gi|431752459|ref|ZP_19541142.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2620]
gi|431757305|ref|ZP_19545936.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3083]
gi|431762576|ref|ZP_19551136.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3548]
gi|257822719|gb|EEV49651.1| AP endonuclease [Enterococcus faecium 1,141,733]
gi|257831805|gb|EEV58226.1| AP endonuclease [Enterococcus faecium Com12]
gi|292644089|gb|EFF62194.1| exodeoxyribonuclease III [Enterococcus faecium PC4.1]
gi|430613950|gb|ELB50949.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2620]
gi|430619594|gb|ELB56421.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3083]
gi|430623625|gb|ELB60304.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3548]
Length = 250
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 150/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + KE L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAERKGYSGTAIFAKEPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q+IDL N N K AG+T EER
Sbjct: 116 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAAL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ LA + D I
Sbjct: 175 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLAPRLADAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HTDIMGSDHCPVELDL 249
>gi|421858846|ref|ZP_16291099.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
gi|410831608|dbj|GAC41536.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
Length = 257
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 153/258 (59%), Gaps = 13/258 (5%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQED----EVPESFRKSLSHYH 127
+K+ +WNVNGLRACV K ++Y + DI +Q+ + QE E+ E +RK ++
Sbjct: 1 MKLISWNVNGLRACVNK-GFLDYFKASDADIFCVQETKLQEGQIGIELGEPYRKYWNY-- 57
Query: 128 MFWIGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKL 187
KG G + T+ +P +V+YG+ + GR+IT +F+ F +TVY PN+ L
Sbjct: 58 ----AEKKGYSGTAIFTRIEPQSVRYGMEEDAEPEGRIITLEFESFYLVTVYTPNAKRDL 113
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+++R+ W++ F Y+Q EL ++ +I+ GDLNV Q IDL N N +G+T EER
Sbjct: 114 SRLEYRLEWEERFRRYLQ-ELDAHKPVIVCGDLNVAHQEIDLKNAKSNQGNSGFTPEERD 172
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
LL+ G +D FRH YPD AYT+WSF K R N GWR+DY LVS +L + IKD
Sbjct: 173 KMTRLLEAGFIDTFRHRYPDRTDAYTWWSFMPK-VRERNIGWRIDYFLVSARLNDFIKDA 231
Query: 308 IIRSDVQGSTHCPVVLRL 325
I + + GS HCPV+L +
Sbjct: 232 KIDAAITGSDHCPVILEM 249
>gi|210634817|ref|ZP_03298323.1| hypothetical protein COLSTE_02250 [Collinsella stercoris DSM 13279]
gi|210158621|gb|EEA89592.1| exodeoxyribonuclease III [Collinsella stercoris DSM 13279]
Length = 280
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/277 (39%), Positives = 158/277 (57%), Gaps = 26/277 (9%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
+K+++WNVNGLRA +KK+ I+ E + DI+ LQ+ + QE +V L YH W
Sbjct: 9 LKLASWNVNGLRAVLKKDPSFTDIVSELDADILGLQETKLQEGQV----EIDLPGYHQVW 64
Query: 131 IGSD-KGQGGVGLLTKEKPLTVKYG------------------IPGVSNQRGRVITAKFK 171
++ KG G + T+++PL+V++ + V+ GRV +F+
Sbjct: 65 SYAERKGYSGTAVFTRDEPLSVRHADAVLAAGRAAGLTDDQLELVAVAATEGRVCALEFE 124
Query: 172 RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQS-ELRSNSNIIISGDLNVCLQSIDLA 230
RF F+ VY PN+ +L +D RM WD + ++ S E + ++ GD NV IDL
Sbjct: 125 RFWFVDVYTPNAQGELARLDTRMAWDDAYRAFLLSLEDETGKPVVTCGDFNVAHNEIDLK 184
Query: 231 NPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWR 290
NP N AG++ EER F ELLD G D FR PD EGAY++WS+R +AR NN GWR
Sbjct: 185 NPKSNRGNAGFSDEERSKFVELLDAGYTDTFRAANPDLEGAYSWWSYR-FNARKNNAGWR 243
Query: 291 LDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+DY LVS+ +A+ ++ IRSD+ GS HCPV L + L
Sbjct: 244 IDYFLVSDSIADRVRATGIRSDIFGSDHCPVTLEIGL 280
>gi|425056645|ref|ZP_18460091.1| exodeoxyribonuclease III [Enterococcus faecium 505]
gi|403031334|gb|EJY42950.1| exodeoxyribonuclease III [Enterococcus faecium 505]
Length = 269
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 150/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 20 LKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 74
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + KE L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 75 YAERKGYSGTAIFAKEPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 134
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q+IDL N N K AG+T EER
Sbjct: 135 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAAL 193
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ LA + D I
Sbjct: 194 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLAPRLADAKI 252
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 253 HTDIMGSDHCPVELDL 268
>gi|395244503|ref|ZP_10421467.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
gi|394483150|emb|CCI82475.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
Length = 265
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 159/259 (61%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG RA ++ + ++ E N DI +Q IR +EV + Y+ +W
Sbjct: 12 MKFISWNVNGFRAAMR-HGFLDTFKELNADIFGMQDIRLSPNEV----SIDTTGYYQYWN 66
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+K G + TK KPL V GI GVS +Q+GR IT ++ F F+T YVP SG +L+
Sbjct: 67 YSKEKSFDGTAIFTKIKPLAVANGI-GVSEFDQQGRTITLEYPNFYFVTTYVPFSGEQLQ 125
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+DFR+ WDQ F Y+ +L +N +II GD++V + IDLA P +N AG+T +ER +
Sbjct: 126 RLDFRIAWDQAFRKYLL-KLEANKPVIIGGDMSVAHEPIDLAQPSENHHHAGFTEQERDD 184
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL++G D FR+L+P+E+ Y+YWS+R R N+GWRLDY LVS L + IK
Sbjct: 185 FTKLLNSGFTDTFRYLHPNEKDIYSYWSYR-YHGREKNEGWRLDYILVSNSLDSKIKKAN 243
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCPV L + +
Sbjct: 244 ILTEIPGSDHCPVSLEMDI 262
>gi|227552171|ref|ZP_03982220.1| exodeoxyribonuclease III [Enterococcus faecium TX1330]
gi|257892875|ref|ZP_05672528.1| exodeoxyribonuclease, partial [Enterococcus faecium 1,231,408]
gi|227178703|gb|EEI59675.1| exodeoxyribonuclease III [Enterococcus faecium TX1330]
gi|257829254|gb|EEV55861.1| exodeoxyribonuclease [Enterococcus faecium 1,231,408]
Length = 269
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 150/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 20 LKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 74
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + KE L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 75 YAERKGYSGTAIFAKEPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 134
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q+IDL N N K AG+T EER
Sbjct: 135 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAAL 193
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ LA + D I
Sbjct: 194 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLAPRLADAKI 252
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 253 HTDIMGSDHCPVELDL 268
>gi|336452587|ref|YP_004607053.1| exodeoxyribonuclease III [Helicobacter bizzozeronii CIII-1]
gi|335332614|emb|CCB79341.1| exodeoxyribonuclease III [Helicobacter bizzozeronii CIII-1]
Length = 251
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 154/257 (59%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
V + +WNVNGLRAC++K E++ + DI +Q+ + PE Y FW
Sbjct: 2 VHLISWNVNGLRACMQK-GFKEFLEQSGADIFCVQETKMH----PEQANFIFEDYASFWN 56
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYVPNSGIKLK 188
+ K G GV L+K P+ YGI GV+ GRV+T ++ F + VYVPNS L
Sbjct: 57 SAQKKGYSGVLTLSKNAPINTTYGI-GVAQHDLEGRVVTCEYADFYLVNVYVPNSQRGLL 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R+ W++ F ++ ++L + +++ GDLNV + IDL NP+ N AG++ EER
Sbjct: 116 RLDYRLKWEEAFRRFL-ADLMGHKAVVVCGDLNVAHKEIDLKNPESNHHNAGFSPEERHA 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LLD GL+D +RH YP+++G YT+WS+ N+ AR N GWR+DY LVS L +KD +
Sbjct: 175 FSQLLDLGLIDTYRHFYPNQQGIYTWWSYMNE-ARARNIGWRIDYFLVSHTLQEQLKDAL 233
Query: 309 IRSDVQGSTHCPVVLRL 325
I + GS HCPV L++
Sbjct: 234 IHPHILGSDHCPVGLKI 250
>gi|189460159|ref|ZP_03008944.1| hypothetical protein BACCOP_00795 [Bacteroides coprocola DSM 17136]
gi|189433149|gb|EDV02134.1| exodeoxyribonuclease III [Bacteroides coprocola DSM 17136]
Length = 253
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 152/252 (60%), Gaps = 9/252 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC K E E + D LQ+ + QE ++ +F S+++
Sbjct: 3 MKLISWNVNGLRACCDK-GFREIFNELDADFFCLQETKMQEGQLDLAFEGYTSYWNY--- 58
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+ +PL+V YG+ G+ + GRVIT + + F +TVY PNS LK
Sbjct: 59 AEKKGYSGTAIFTRHQPLSVTYGL-GIDEHDHEGRVITLEMENFYLVTVYTPNSQDGLKR 117
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W++ F Y+ +L +++ GDLNV + IDL NP N AG+T +ER F
Sbjct: 118 LDYRMTWEEDFRKYLL-QLDRQKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKF 176
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ LLD G +D FRH YP +E Y++WS+R K AR N GWR+DY L S ++A+ ++D I
Sbjct: 177 QLLLDAGFIDTFRHFYPTQENIYSWWSYRFK-AREKNAGWRIDYFLASSRIADKLQDAKI 235
Query: 310 RSDVQGSTHCPV 321
+++ GS HCPV
Sbjct: 236 HTEIFGSDHCPV 247
>gi|260589662|ref|ZP_05855575.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|331083093|ref|ZP_08332210.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
gi|260539902|gb|EEX20471.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|330405095|gb|EGG84632.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
Length = 251
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/262 (40%), Positives = 152/262 (58%), Gaps = 17/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K +WNVNGLRACVKK E+ + + D +Q+ + QE ++ PE Y
Sbjct: 1 MKFISWNVNGLRACVKK-GFTEFFEQTDADFFCIQETKLQEGQIDFEPEG-------YFC 52
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + K++PL+V+YGI G+ +Q GRVIT +++ F +TVY PNS
Sbjct: 53 YWNYAVKKGYSGTAIFAKKEPLSVQYGI-GIEEHDQEGRVITLEYENFYMVTVYTPNSQS 111
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
+L + +RM W+ F Y+Q +L +I+ GDLNV Q IDL NP N AG+T EE
Sbjct: 112 ELARLSYRMQWEDDFRAYLQ-QLDEKKPVIMCGDLNVAHQEIDLKNPKTNRHNAGFTDEE 170
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F LD G D FR+ YPD+ Y++WS+R K AR N GWR+DY S++L +
Sbjct: 171 REKFTTFLDAGFTDTFRYFYPDKTEIYSWWSYRFK-AREKNAGWRIDYFCTSKRLDEKLL 229
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV +++ L
Sbjct: 230 SASIHTDIFGSDHCPVEVQIEL 251
>gi|421882518|ref|ZP_16313789.1| Exodeoxyribonuclease III [Helicobacter bizzozeronii CCUG 35545]
gi|375315363|emb|CCF81785.1| Exodeoxyribonuclease III [Helicobacter bizzozeronii CCUG 35545]
Length = 250
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 152/253 (60%), Gaps = 11/253 (4%)
Query: 76 TWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK 135
+WNVNGLRAC++K E++ + DI +Q+ + PE Y FW + K
Sbjct: 5 SWNVNGLRACMQK-GFKEFLEQSGADIFCVQETKMH----PEQANFIFEDYASFWNSAQK 59
Query: 136 -GQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYVPNSGIKLKAIDF 192
G GV L+K P+ YGI GV+ GRV+T ++ F + VYVPNS L +D+
Sbjct: 60 KGYSGVLTLSKNAPINTTYGI-GVAQHDLEGRVVTCEYANFYLVNVYVPNSQRGLLRLDY 118
Query: 193 RMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFREL 252
R+ W++ F ++ ++L + +++ GDLNV + IDL NP+ N AG++ EER F +L
Sbjct: 119 RLKWEEAFRQFL-ADLMGHKAVVVCGDLNVAHKEIDLKNPESNHHNAGFSPEERHAFSQL 177
Query: 253 LDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSD 312
LD GL+D +RH YP+++G YT+WS+ N+ AR N GWR+DY LVS L +KD +I
Sbjct: 178 LDLGLIDTYRHFYPNQQGIYTWWSYMNE-ARARNIGWRIDYFLVSHTLQEQLKDALIHPH 236
Query: 313 VQGSTHCPVVLRL 325
+ GS HCPV L++
Sbjct: 237 ILGSDHCPVGLKI 249
>gi|292670448|ref|ZP_06603874.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
gi|292647858|gb|EFF65830.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
Length = 250
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 149/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++ +WNVNGLRA +KK +E E N D+ LQ+ + QE + + + F+
Sbjct: 1 MRFVSWNVNGLRAALKK-GFMESFKELNADVFCLQETKMQEGQ---AILDLPGYEQYFYS 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+ KPL+V YGI G+ + GRVIT + +TVY PN+ L+
Sbjct: 57 AEKKGYSGTAIFTRVKPLSVSYGI-GIEEHDNEGRVITMELPDVYLVTVYTPNAKRALER 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F ++ +LR+ +++ GDLNV IDL NP N + AG+T EER F
Sbjct: 116 LDYRMAWEDSFRAFLL-DLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL G VD FR LYPD GAYT+WS+ + AR N GWR+DY LVS +L + I I
Sbjct: 175 GELLAAGFVDTFRALYPDRTGAYTWWSYL-RHARETNAGWRIDYFLVSAELRDRIAAAEI 233
Query: 310 RSDVQGSTHCPVVLRL 325
SD+ GS HCPV L L
Sbjct: 234 HSDIFGSDHCPVSLTL 249
>gi|238854034|ref|ZP_04644388.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
gi|238833354|gb|EEQ25637.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
Length = 254
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 157/259 (60%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA ++ + V + + DI A+Q R + +EV + L Y+ +W
Sbjct: 1 MKFMSWNVNGLRAALR-HGFVNTFTDLDADIFAIQDTRVEANEV----QIDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVK--YGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKEKP+TV +G+P V + GR IT +F F FI V VP SG KL+
Sbjct: 56 YAKRKGYAGTAVFTKEKPITVANGFGVPEVDGE-GRSITLEFPNFYFIDVQVPFSGEKLQ 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+DFR +W Q F +Y+ ++L +II GD++V + IDLA PD N + AG+T ER+
Sbjct: 115 RLDFRELWAQTFRNYV-TKLMQYKPVIIGGDMSVAHEKIDLAEPDDNHRHAGFTGIERKE 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G +D FR+ +PD E YTYWS+R + AR N GWRLDY L S L + + +
Sbjct: 174 FSELLNAGFIDTFRYFHPD-EAKYTYWSYR-EDARAKNIGWRLDYFLASHNLEDKMINTK 231
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCP+ L L +
Sbjct: 232 ILNNIMGSDHCPIELDLDI 250
>gi|163814023|ref|ZP_02205416.1| hypothetical protein COPEUT_00176 [Coprococcus eutactus ATCC 27759]
gi|158450717|gb|EDP27712.1| exodeoxyribonuclease III [Coprococcus eutactus ATCC 27759]
Length = 257
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 154/258 (59%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG 132
K+ +WNVNG+RAC K +++ + DI +Q+ + QE ++ + Y+ +W
Sbjct: 8 KLISWNVNGIRACAGK-GFMDFFNSIDADIFCIQESKMQEGQLT----LDMPGYYQYWNY 62
Query: 133 SDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+DK G G + TKEK L+ GI G+ + GRVIT +++ F +TVY PNS +L
Sbjct: 63 ADKKGYSGTAIFTKEKSLSETKGI-GIDEHDHEGRVITLEYENFYMVTVYTPNSQNELAR 121
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y++ +L N +I+ GD+NV IDL NP N K AG+T EER
Sbjct: 122 LDYRMKWEDDFRAYLK-KLEENKPVIVCGDMNVAHNEIDLKNPKTNRKNAGFTDEEREKM 180
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YPD+E Y++WS+R K AR N GWR+DY L SE L + + D I
Sbjct: 181 TVLLDDGFIDTFRYFYPDQENIYSWWSYRFK-AREKNAGWRIDYFLTSESLKDKLIDAKI 239
Query: 310 RSDVQGSTHCPVVLRLSL 327
+D+ GS HCPV L + +
Sbjct: 240 HTDIMGSDHCPVELDIDM 257
>gi|304407353|ref|ZP_07389006.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
gi|304343794|gb|EFM09635.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
Length = 255
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 151/254 (59%), Gaps = 5/254 (1%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRACV K ++Y E + DI LQ+ + Q ++ S Y + +
Sbjct: 1 MKLISWNVNGLRACVTK-GFMDYFNESDADIFCLQETKLQAGQIELPLEGRYSQYWNYAV 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAID 191
KG G + TK +PLTV+YGI S GR++T +F RF + VY PN+ L +
Sbjct: 60 --KKGYSGTAVFTKVEPLTVRYGIEEDSEDEGRILTLEFDRFYLVNVYTPNAKRDLSRLG 117
Query: 192 FRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRE 251
+R+ W+ F Y+ EL + +I+ GDLNV Q IDL N N +G+T EER +
Sbjct: 118 YRLEWEDRFRAYLL-ELDAQKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTTEERGKMTD 176
Query: 252 LLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRS 311
LL++G +D FRHL+P+ + A+++WSF K R N GWR+DY L S +LA ++ D I S
Sbjct: 177 LLESGFIDTFRHLHPERDDAFSWWSFMPK-VRERNIGWRIDYFLASARLAPHVTDAGIDS 235
Query: 312 DVQGSTHCPVVLRL 325
+ GS HCPV+++L
Sbjct: 236 AILGSDHCPVMVQL 249
>gi|169347307|ref|ZP_02866245.1| hypothetical protein CLOSPI_00022 [Clostridium spiroforme DSM 1552]
gi|169293924|gb|EDS76057.1| exodeoxyribonuclease III [Clostridium spiroforme DSM 1552]
Length = 252
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 156/259 (60%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RAC+ K + + + + DI +Q+ + QE ++ H + ++
Sbjct: 1 MKLISWNVNGIRACINK-GFYDILKDFDADIFCIQETKMQEGQIEIE-----DHGYYLYM 54
Query: 132 GS--DKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
S KG G + TK KPL+ YGI +Q GRVIT ++ +F + Y PNS LK
Sbjct: 55 NSAVKKGYSGTLVFTKVKPLSYSYGINIEEHDQEGRVITLEYNKFYLVNCYTPNSQDGLK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++R +W+ F Y++S L +I+ GDLNV Q IDL NP N K AG++ EER
Sbjct: 115 RLEYRQVWEDDFLAYLKS-LEEKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LL+ G +D FR+LYPD +GAY++WS+R +AR NN GWR+DY +VS+ L IKD
Sbjct: 174 MTQLLNHGFIDTFRYLYPDLQGAYSWWSYR-FNARKNNAGWRIDYFIVSDCLKEKIKDAY 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I D+ GS HCPV L + L
Sbjct: 233 IFKDIMGSDHCPVGLDIEL 251
>gi|15227354|ref|NP_181677.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
gi|8488963|sp|P45951.2|ARP_ARATH RecName: Full=Apurinic endonuclease-redox protein; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|3241944|gb|AAC23731.1| DNA-(apurinic or apyrimidinic site) lyase (ARP) [Arabidopsis
thaliana]
gi|330254890|gb|AEC09984.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 536
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/271 (42%), Positives = 164/271 (60%), Gaps = 14/271 (5%)
Query: 67 PYTTK-VKVSTWNVNGLRACVK--KNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
P TK VKV TWNVNGLR +K + ++ EN DI+ LQ+ + Q +V E + +
Sbjct: 270 PEGTKCVKVMTWNVNGLRGLLKFESFSALQLAQRENFDILCLQETKLQVKDVEEIKKTLI 329
Query: 124 SHY-HMFWIGS--DKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITV 178
Y H FW S G G ++++ KPL+V+YG G+S GR++TA+F F I
Sbjct: 330 DGYDHSFWSCSVSKLGYSGTAIISRIKPLSVRYGT-GLSGHDTEGRIVTAEFDSFYLINT 388
Query: 179 YVPNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVK 237
YVPNSG LK + +R+ WD+ ++I+ EL + ++++GDLN + ID+ NP N +
Sbjct: 389 YVPNSGDGLKRLSYRIEEWDRTLSNHIK-ELEKSKPVVLTGDLNCAHEEIDIFNPAGNKR 447
Query: 238 TAGYTVEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLV 296
+AG+T+EER++F LLD G VD FR +P G YTYW +R+ R NKGWRLDY LV
Sbjct: 448 SAGFTIEERQSFGANLLDKGFVDTFRKQHPGVVG-YTYWGYRH-GGRKTNKGWRLDYFLV 505
Query: 297 SEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
S+ +A N+ D I D+ GS HCP+ L L L
Sbjct: 506 SQSIAANVHDSYILPDINGSDHCPIGLILKL 536
>gi|373107112|ref|ZP_09521412.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
gi|371652051|gb|EHO17477.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
Length = 254
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 157/258 (60%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRA K + E + DI +Q+ + QE ++ L Y+ +W
Sbjct: 5 KMISWNVNGLRAAAGK-TFFDAFHELDADIFCIQESKLQEGQI----ELDLPGYYDYWNY 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV + TKEKP+ V YG+ G+ ++ GRVIT +F + +T Y PNS +LK
Sbjct: 60 AEKKGYSGVAMFTKEKPVNVSYGL-GIPEHDKEGRVITLEFPDYYVLTCYTPNSQNELKR 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F+ YI+ L +I GDLNV + IDL NP N + AG+T EER
Sbjct: 119 LDYRMEWEDAFFAYIKG-LDQKKPLIYCGDLNVAHEEIDLKNPSTNRRNAGFTDEEREKM 177
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L G VD+FR+L+P+E+ AY++WS+R K AR N GWR+DY +VSE+L + I+ I
Sbjct: 178 TRVLTNGFVDSFRYLHPEEKDAYSWWSYRMK-ARERNVGWRIDYFIVSERLKDRIQGASI 236
Query: 310 RSDVQGSTHCPVVLRLSL 327
S++ GS HCPV L++ L
Sbjct: 237 HSEILGSDHCPVELKIDL 254
>gi|345018486|ref|YP_004820839.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033829|gb|AEM79555.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
Length = 257
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 158/257 (61%), Gaps = 8/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC++K ++Y + N DI +Q+ + Q + +L Y+ FW
Sbjct: 1 MKLVSWNVNGLRACLQK-GFMDYFKKVNADIFCIQETKLQPHQTDLE-ELNLEGYYAFWN 58
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGI--PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
K G + TK KPL+V YGI P N+ GRVIT ++++F + Y PNS L
Sbjct: 59 FAEKKAYSGTAVFTKYKPLSVNYGIGIPQHDNE-GRVITLEYEKFYLVNTYTPNSQRGLT 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W++ F +Y+ +L S II+ GDLNV + ID+ NP N + AG+T EER
Sbjct: 118 RLSYRMEWEEDFRNYLL-KLDSVKPIILCGDLNVAHKEIDIKNPSANRRNAGFTDEEREK 176
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LL++G +D FR+ YP ++ AYT+WS+ ++AR N GWR+DY +VS++L + + D
Sbjct: 177 MTMLLNSGFIDTFRYFYPHKKDAYTWWSYM-RNAREKNIGWRIDYFIVSQRLKDYLIDAE 235
Query: 309 IRSDVQGSTHCPVVLRL 325
I SDV GS HCPVVL +
Sbjct: 236 IHSDVMGSDHCPVVLEI 252
>gi|358065851|ref|ZP_09152385.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
gi|356695714|gb|EHI57339.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
Length = 251
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 151/258 (58%), Gaps = 11/258 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
K+ +WNVNGLRACV K +EY E + D+ +Q+ + Q ++ L Y+ +W
Sbjct: 2 TKLISWNVNGLRACVGK-GFLEYFNEVDADVFCIQESKLQAGQI----DLPLEGYYQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TKE+P++V YGI G+ ++ GRVITA+F + +T Y PNS L
Sbjct: 57 YAEKKGYSGTAMFTKEEPVSVAYGI-GIEEHDKEGRVITAEFPEYYVVTCYTPNSKDGLA 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y++ L +I GDLNV Q IDL NP N K AG++ EER
Sbjct: 116 RLPYRMEWEDAFLAYLKG-LEEKKPVIFCGDLNVAHQEIDLKNPKTNRKNAGFSDEERGK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ++L G +D +R+ YPD+ Y++WS+R SAR N GWR+DY VSE L + +
Sbjct: 175 FSDVLAAGFIDTYRYFYPDKTEVYSWWSYRF-SARAKNAGWRIDYFCVSEALKDRLVSAD 233
Query: 309 IRSDVQGSTHCPVVLRLS 326
I +VQGS HCPV L +S
Sbjct: 234 IHMEVQGSDHCPVELVIS 251
>gi|420417863|ref|ZP_14916958.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
gi|393031044|gb|EJB32117.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
Length = 250
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N DI +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVNADIFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEMEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|414085431|ref|YP_006994142.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum LMA28]
gi|412999018|emb|CCO12827.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum LMA28]
Length = 251
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 157/258 (60%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VKK ++ + + D LQ+ + Q D++ L YH +W
Sbjct: 1 MKLISWNVNGLRAVVKK-GFIDIFNQLDADFFCLQETKLQADQID----LELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK +P V YG+ +Q GRVIT + + +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFTKHEPDDVFYGLGKEEHDQEGRVITLSYPDYYVVTCYTPNSQNELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W++ F Y+ ++L + +I+ GDLNV ++ID+ N N K AG+T EER F
Sbjct: 116 LDYRMTWEEDFLAYL-NQLDAEKPVIVCGDLNVAHENIDIKNWKTNRKNAGFTDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
E L+ G +D FR+ YP+ EGAY++WS+R +AR NN GWR+DY +VSE+L + I
Sbjct: 175 TEFLENGYIDTFRYFYPELEGAYSWWSYR-FNARANNAGWRIDYFIVSERLQEKLVSAAI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
++V GS HCPV L+++L
Sbjct: 234 LNEVVGSDHCPVELQINL 251
>gi|402301696|ref|ZP_10820957.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
gi|401723230|gb|EJS96766.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
Length = 250
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/256 (39%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNG+RACVKK ++Y + + D A+Q+ +CQ+ ++ L Y +W
Sbjct: 1 MKFVSWNVNGIRACVKK-GFLDYFHQVDADFFAIQETKCQKGQI----ELQLDGYEQYWN 55
Query: 132 GSD-KGQGGVGLLTKEKPLTVKYGI-PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
++ KG G + TK PL+V+YGI + +Q GRVI ++ +F +T Y PNS L
Sbjct: 56 DAERKGYSGTAIFTKHTPLSVQYGIGEDLIDQEGRVIALEYSKFYLVTCYTPNSKRDLSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +R+ W++HF Y+++ L +I+ GDLNV IDL N N +G+T EER
Sbjct: 116 LPYRLSWEEHFLAYLKN-LEEKKPVILCGDLNVAHTEIDLKNAKSNHGNSGFTQEERGKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL +G D+FR+LYP+ Y++WS+ NK R N GWR+DY +VS +L N+IK I
Sbjct: 175 TTLLSSGFTDSFRYLYPETTDKYSWWSYMNK-VRERNIGWRIDYFIVSNELTNSIKKAEI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+++ GS HCPV L L
Sbjct: 234 HNEILGSDHCPVFLEL 249
>gi|340352974|ref|ZP_08675807.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
gi|339611994|gb|EGQ16810.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
Length = 250
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/258 (43%), Positives = 153/258 (59%), Gaps = 10/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRACV K E +E N D LQ+ + QE ++ +F Y +W
Sbjct: 1 MKFISWNVNGLRACVTK-GFKESFVELNADFFCLQETKMQEGQLDITF----DGYESYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+DK G G + TK KP+ V YG+ + GRVIT + + F +T Y PNS LK
Sbjct: 56 YADKKGYSGTAIFTKHKPINVHYGLDIDEHDHEGRVITLEMETFFLVTCYTPNSQDGLKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F YI+ +L ++I GDLNV + IDL NP N K AG+T EER
Sbjct: 116 LDYRMKWEDDFQAYIK-QLDKKKPVVICGDLNVAHEEIDLKNPKTNRKNAGFTDEERAKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ L+ G +D+FR LYP E+ Y++WS+R K AR N GWR+DY L+S +L N + D I
Sbjct: 175 TQFLNNGFIDSFRTLYP-EQITYSWWSYRFK-AREKNAGWRIDYFLLSNRLRNQLIDAKI 232
Query: 310 RSDVQGSTHCPVVLRLSL 327
++V GS HCPV + L+L
Sbjct: 233 HTEVYGSDHCPVEVELNL 250
>gi|347753480|ref|YP_004861045.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
gi|347585998|gb|AEP02265.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
Length = 251
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 152/254 (59%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRACVKK + + E + DI +Q+ + Q ++ L Y+ +W
Sbjct: 1 MKFVSWNVNGLRACVKK-GFLAFFAETDADIFCVQETKLQAGQIA----LDLDGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGI-PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL+V+YG+ + GR++T +++ F + VY PNS L
Sbjct: 56 YAERKGYSGTAVFTKKEPLSVRYGVGEDRTEPEGRILTLEYEDFYLVNVYTPNSQRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +R+ W+ Y+ +EL +I+ GD+NV Q IDL N NV +G+T EER
Sbjct: 116 LGYRLEWEDRMRAYL-TELDKKKPVIVCGDMNVAHQEIDLKNAKNNVGNSGFTAEERGKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL++G +D+FR+ YP+ EGAYT+WS+ NK R N GWR+DY LVS++LA +KD +
Sbjct: 175 TGLLNSGFIDSFRYFYPEREGAYTWWSYMNK-VRERNIGWRIDYFLVSKRLAGRLKDAGM 233
Query: 310 RSDVQGSTHCPVVL 323
++ GS HCPV L
Sbjct: 234 YPEIMGSDHCPVFL 247
>gi|472869|emb|CAA54234.1| ARP protein [Arabidopsis thaliana]
Length = 527
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/271 (42%), Positives = 164/271 (60%), Gaps = 14/271 (5%)
Query: 67 PYTTK-VKVSTWNVNGLRACVK--KNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
P TK VKV TWNVNGLR +K + ++ EN DI+ LQ+ + Q +V E + +
Sbjct: 261 PEGTKCVKVMTWNVNGLRGLLKFESFSALQLAQRENFDILCLQETKLQVKDVEEIKKTLI 320
Query: 124 SHY-HMFWIGS--DKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITV 178
Y H FW S G G ++++ KPL+V+YG G+S GR++TA+F F I
Sbjct: 321 DGYDHSFWSCSVSKLGYSGTAIISRIKPLSVRYGT-GLSGHDTEGRIVTAEFDSFYLINT 379
Query: 179 YVPNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVK 237
YVPNSG LK + +R+ WD+ ++I+ EL + ++++GDLN + ID+ NP N +
Sbjct: 380 YVPNSGDGLKRLSYRIEEWDRTLSNHIK-ELEKSKPVVLTGDLNCAHEEIDIFNPAGNKR 438
Query: 238 TAGYTVEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLV 296
+AG+T+EER++F LLD G VD FR +P G YTYW +R+ R NKGWRLDY LV
Sbjct: 439 SAGFTIEERQSFGANLLDKGFVDTFRKQHPGVVG-YTYWGYRH-GGRKTNKGWRLDYFLV 496
Query: 297 SEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
S+ +A N+ D I D+ GS HCP+ L L L
Sbjct: 497 SQSIAANVHDSYILPDINGSDHCPIGLILKL 527
>gi|346311925|ref|ZP_08853923.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
gi|345899662|gb|EGX69501.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
Length = 277
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 158/272 (58%), Gaps = 22/272 (8%)
Query: 73 KVSTWNVNGLRACVKKN-ACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
K+++WNVNGLRA +KK+ + ++ + + + D++ALQ+ + QE +V L YH W
Sbjct: 11 KLASWNVNGLRAVLKKDPSFIDIVHQLDADVIALQETKLQEGQV----EIDLPGYHQVWS 66
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYG---IPGVSN-----------QRGRVITAKFKRFTFI 176
KG G + T+ +PL+V++ +P GRV +F RF F+
Sbjct: 67 YAQRKGYSGTAVFTRVEPLSVRHADSLLPFAGEGEAAELLAVAATEGRVCALEFDRFWFV 126
Query: 177 TVYVPNSGIKLKAIDFRMIWDQHFYDYIQS-ELRSNSNIIISGDLNVCLQSIDLANPDKN 235
VY PN+ +L ID RM WD + +++S E + +I GD NV IDL NP N
Sbjct: 127 DVYTPNAQNELARIDTRMAWDDAYRAFLKSLEDETGKPVITCGDFNVAHNEIDLKNPKSN 186
Query: 236 VKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHL 295
AG++ EER F ELLD G D +R L PD EG Y++WS+R +AR NN GWR+DY L
Sbjct: 187 RGNAGFSDEERSKFTELLDAGFTDTWRSLNPDVEGVYSWWSYR-FNARKNNAGWRIDYFL 245
Query: 296 VSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
VS+ +A+N++D IR+D+ GS HCPV L + L
Sbjct: 246 VSDAIASNVRDARIRNDIFGSDHCPVELEIEL 277
>gi|257870107|ref|ZP_05649760.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
gi|257804271|gb|EEV33093.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
Length = 261
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/264 (40%), Positives = 153/264 (57%), Gaps = 11/264 (4%)
Query: 66 KPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSH 125
+P T +K +WNVNGLRA VKKN +E + D LQ+ + Q ++ L
Sbjct: 6 EPRRTNMKFISWNVNGLRAIVKKN-FLEAFETFDADFFCLQETKLQAGQI----ELDLPG 60
Query: 126 YHMFW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPN 182
Y +W KG G + KE L YGI G+ + GRVIT ++ F +T Y PN
Sbjct: 61 YTQYWNYAEKKGYSGTAIFAKEPALAAHYGI-GIEEHDAEGRVITLEYPEFFLVTCYTPN 119
Query: 183 SGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYT 242
+ +L+ +D+RM W+ F Y+ ++L+ +I+ GDLNV Q+IDL N N K AG+T
Sbjct: 120 AQNELRRLDYRMTWEDAFRAYL-TDLKQQKPVILCGDLNVAHQNIDLKNWKTNQKNAGFT 178
Query: 243 VEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLAN 302
EER F LL G D FR+ YPD EG Y++WS+R +AR NN GWR+DY +VS+ L +
Sbjct: 179 PEEREKFSTLLSAGFTDTFRYFYPDAEGIYSWWSYR-FNARKNNAGWRIDYFVVSDDLND 237
Query: 303 NIKDCIIRSDVQGSTHCPVVLRLS 326
+ D I +++ GS HCPV L+L+
Sbjct: 238 RLVDAKIHTEILGSDHCPVELQLN 261
>gi|376263099|ref|YP_005149819.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
gi|373947093|gb|AEY68014.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
Length = 253
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 154/257 (59%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
K+ +WNVNGLRAC+ K ++ E + DI +Q+ + QE ++ L Y +W
Sbjct: 2 TKLVSWNVNGLRACIGKGF-WDFFKEVDADIFCVQETKLQEGQI----ELELEGYEHYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK KP++ GI G+ + GRVIT +F+ + + VY PNS +L+
Sbjct: 57 YAVKKGYSGTAIFTKIKPVSSSCGI-GIEEHDNEGRVITLEFEEYFLVNVYTPNSKRELE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F Y++ +L +II GD+NV Q ID+ NP N ++AG+T+EER
Sbjct: 116 RLEYRMKWEDDFRVYLK-QLEQTKPVIICGDMNVAHQEIDIKNPRSNKRSAGFTMEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G VD FR LYPD+ GAYT+WS+ K AR N GWR+DY +SE L + I+
Sbjct: 175 FSELLEQGFVDTFRTLYPDKTGAYTWWSYMFK-AREKNVGWRIDYFCISEALKDRIEAAE 233
Query: 309 IRSDVQGSTHCPVVLRL 325
I D+ GS HCPV L +
Sbjct: 234 IYCDIMGSDHCPVGLTI 250
>gi|373454216|ref|ZP_09546089.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
gi|371936051|gb|EHO63787.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
Length = 254
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 152/257 (59%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRAC+KK ++ + D LQ+ + Q P L YH +W
Sbjct: 4 LKYISWNVNGLRACIKKGF-MDAFNALDADCFCLQETKLQ----PHQIELELPGYHQYWN 58
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + TKE+PL+V YG+ G+ +Q GR+ITA F + Y PNS L
Sbjct: 59 SAVKKGYSGTAIFTKEEPLSVTYGL-GIEEHDQEGRLITADFGSHYLLCCYTPNSQRGLA 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W++ +Y+ ++L + +I+ GDLNV + ID+ANP N K AG+T EER
Sbjct: 118 RLSYRMTWEKAMKEYM-TKLAAEKPVILCGDLNVAHEDIDIANPASNHKNAGFTDEERGR 176
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LL G D+FRHL+PDE+ AY++WS+ K AR N GWR+DY LVS ++IK
Sbjct: 177 MTDLLAAGFTDSFRHLHPDEKDAYSWWSYFAK-ARERNVGWRIDYFLVSSVWKDHIKGAS 235
Query: 309 IRSDVQGSTHCPVVLRL 325
I SD+ GS HCPV L L
Sbjct: 236 IHSDILGSDHCPVELDL 252
>gi|134045625|ref|YP_001097111.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
gi|132663250|gb|ABO34896.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
Length = 249
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/252 (42%), Positives = 152/252 (60%), Gaps = 10/252 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RAC+K N ++++ E+PD+M +Q+ + Q +V + L Y +W
Sbjct: 1 MKMLSWNVNGIRACLK-NGFMDFLKRESPDVMCIQETKVQSGQV----QLGLDGYFQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KP V YGI N GRVIT KF + + VY PNS L
Sbjct: 56 YAERKGYSGTAVFTKIKPNEVIYGIKNSEHNGEGRVITLKFDEYYLVNVYTPNSQRGLTR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +R WDQ F +Y+++ L + +I GDLNV + IDL NP NVK AG+T EER+ F
Sbjct: 116 LKYRQKWDQDFLNYVKT-LENKKPVIFCGDLNVAHKEIDLKNPKTNVKNAGFTPEERKGF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
++++G +D FR + E Y++WS+R +AR N GWR+DY +SE L NN+KD I
Sbjct: 175 DNIVNSGFLDTFRE-FNKEPDNYSWWSYR-FNARARNIGWRIDYFCISESLRNNLKDAFI 232
Query: 310 RSDVQGSTHCPV 321
S++ GS HCPV
Sbjct: 233 MSEIMGSDHCPV 244
>gi|427406978|ref|ZP_18897183.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
gi|425707453|gb|EKU70497.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
Length = 250
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 148/256 (57%), Gaps = 7/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++ +WNVNGLRA +KK +E + D LQ+ + QE + + + F+
Sbjct: 1 MRFVSWNVNGLRAALKKG-FMESFKALDADAFCLQETKMQEGQ---AILDLPGYEQYFYS 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + T+ +PL+V YGI + GRVIT +F+ +TVY PN+ L+ +
Sbjct: 57 AEKKGYSGTAIFTRVQPLSVAYGIGAPEHDDEGRVITMEFEELYLVTVYTPNAKRALERL 116
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+RM W+ F ++ + LR+ +++ GDLNV + IDL NP N AG+T EER F
Sbjct: 117 DYRMAWEDAFRAFLLN-LRAKKPVVVCGDLNVAHKEIDLKNPKSNRHNAGFTDEERGKFG 175
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
ELL G VD FR LYPD GAYT+WS+ + AR N GWR+DY LVSE+L + I
Sbjct: 176 ELLAAGFVDTFRALYPDRRGAYTWWSYL-RHARETNAGWRIDYFLVSEELRGRVAAAEIH 234
Query: 311 SDVQGSTHCPVVLRLS 326
+D+ GS HCPV L LS
Sbjct: 235 ADIFGSDHCPVSLTLS 250
>gi|373465510|ref|ZP_09556970.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
gi|371760225|gb|EHO48917.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
Length = 256
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/254 (42%), Positives = 147/254 (57%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKK+ + + + D +Q+ + Q ++ +L YH ++
Sbjct: 5 MKFISWNVNGLRAVVKKDFDKTFN-DLDADFFCIQETKMQAGQLA----LTLPGYHQYFN 59
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK PL V YGI + GR IT ++ F +T YVPNSG KLK
Sbjct: 60 YAERKGYSGTAIFTKHAPLNVYYGIQSDEFDHEGRAITLEYPTFYLVTSYVPNSGAKLKR 119
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+DFRM WD F Y+ + L +I+ GDLNV ++IDL NP N AG+T EER +F
Sbjct: 120 LDFRMGWDVAFQQYL-ANLNKEKPVILCGDLNVAHKTIDLKNPQTNHHNAGFTDEERNSF 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LD G +D FRH YPD Y++WS+R AR N GWR+DY + S +LA++I D I
Sbjct: 179 SHFLDQGFMDTFRHFYPDMTDIYSWWSYR-FHARDRNAGWRIDYFVASNRLADHISDSKI 237
Query: 310 RSDVQGSTHCPVVL 323
+DV GS HCPV L
Sbjct: 238 LTDVFGSDHCPVEL 251
>gi|326390442|ref|ZP_08212000.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392939538|ref|ZP_10305182.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
gi|325993560|gb|EGD51994.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392291288|gb|EIV99731.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
Length = 257
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 157/257 (61%), Gaps = 8/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRAC++K ++Y + N DI +Q+ + Q + +L Y+ FW
Sbjct: 1 MKFVSWNVNGLRACLQK-GFMDYFKKVNADIFCIQETKLQPHQTGLE-ELNLEGYYAFWN 58
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGI--PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
K G + TK KPL+V YGI P N+ GRVIT ++++F + Y PNS L
Sbjct: 59 FAEKKAYSGTAVFTKYKPLSVNYGIGIPQHDNE-GRVITLEYEKFYLVNTYTPNSQRGLT 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W++ F +Y+ +L S II+ GDLNV + ID+ NP N + AG+T EER
Sbjct: 118 RLSYRMEWEEDFRNYLL-KLDSVKPIILCGDLNVAHKEIDIKNPSANRRNAGFTDEEREK 176
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LL++G +D FR+ YP ++ AYT+WS+ ++AR N GWR+DY +VS++L + + D
Sbjct: 177 MTMLLNSGFIDTFRYFYPHKKDAYTWWSYM-RNAREKNIGWRIDYFIVSQRLKDYLIDAE 235
Query: 309 IRSDVQGSTHCPVVLRL 325
I SDV GS HCPVVL +
Sbjct: 236 IHSDVMGSDHCPVVLEI 252
>gi|420494787|ref|ZP_14993354.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
gi|393109942|gb|EJC10470.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
Length = 250
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI G ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIGEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|295704797|ref|YP_003597872.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
gi|294802456|gb|ADF39522.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
Length = 253
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/257 (39%), Positives = 156/257 (60%), Gaps = 8/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACV+K ++Y E D+ +Q+ + QE ++ L Y+ +W
Sbjct: 1 MKLISWNVNGIRACVRK-GFLDYFQEVTADVFCIQETKLQEGQID----LQLEGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + TK+KPL+V +G+ GR+IT +F++ + VY PNS L +
Sbjct: 56 YAVKKGYSGTAVFTKQKPLSVSFGVDKELEDEGRIITLEFEQCYVVNVYTPNSKRDLARL 115
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+ R+ W+ Y++ +L S +I+ GDLNV IDL NP N +G+T+EER
Sbjct: 116 EERLQWEDDLLVYLK-KLNSRKAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMT 174
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
LL +G +D FR+LYP++EGAYT+WS+ NK R N GWR+DY +VSE++ + I++ I
Sbjct: 175 TLLASGFLDTFRYLYPNQEGAYTWWSYMNK-VRERNIGWRIDYFIVSERIKDVIQEAAIH 233
Query: 311 SDVQGSTHCPVVLRLSL 327
V GS HCPV+L L++
Sbjct: 234 PHVMGSDHCPVMLELNV 250
>gi|424762341|ref|ZP_18189850.1| exodeoxyribonuclease III [Enterococcus faecium TX1337RF]
gi|402425021|gb|EJV57179.1| exodeoxyribonuclease III [Enterococcus faecium TX1337RF]
Length = 253
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 149/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 4 LKFISWNVNGLRAIANKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 58
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + KE L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 59 YAERKGYSGTAIFAKEPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q+IDL N N K AG+T EER
Sbjct: 119 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAAL 177
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ LA + D I
Sbjct: 178 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLAPRLADAKI 236
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 237 HTDIMGSDHCPVELDL 252
>gi|335047397|ref|ZP_08540418.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761205|gb|EGL38760.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
Length = 250
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++ +WNVNGLRAC+KK ++Y E N D LQ+I+ E ++ ++Y+
Sbjct: 1 MRFVSWNVNGLRACIKK-GFLDYFNEINADFFCLQEIKMSEGQLDLELEGYETYYNY--- 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK PL+VKYG+ G+ + GR+IT +++ F +T Y PNS +L
Sbjct: 57 AQRKGYSGTAIFTKYTPLSVKYGM-GIEEHDNEGRLITLEYEDFFLVTCYTPNSKQELLR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM+W+ F +Y+ EL ++I+ GDLNV + IDL NP N K AG+T +ER
Sbjct: 116 LDYRMVWEDAFRNYLL-ELNKTKSVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDQEREKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD+G D FR+ YPD+E Y++WS+ KS R N GWR+DY L S+ + + + D I
Sbjct: 175 SILLDSGFTDTFRYFYPDKENEYSWWSYFGKS-RERNTGWRIDYFLTSKDMDDRLVDAQI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+ GS HCPV L +
Sbjct: 234 HQRILGSDHCPVYLEI 249
>gi|308183626|ref|YP_003927753.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
gi|384893489|ref|YP_005767582.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308062786|gb|ADO04674.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308065811|gb|ADO07703.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
Length = 250
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + DI +Q+ + Q+D+ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADIFCIQESKMQQDQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VYVPNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|160947302|ref|ZP_02094469.1| hypothetical protein PEPMIC_01235 [Parvimonas micra ATCC 33270]
gi|343520435|ref|ZP_08757404.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
gi|158446436|gb|EDP23431.1| exodeoxyribonuclease III [Parvimonas micra ATCC 33270]
gi|343397393|gb|EGV09927.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
Length = 250
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 152/257 (59%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
++ +WNVNGLRAC+KK ++Y E N D LQ+I+ E ++ L Y F+
Sbjct: 1 MRFISWNVNGLRACIKK-GFLDYFNEINADFFCLQEIKMSEGQLD----LELEGYETFYN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK KPL+VKYG+ G+ + GR+IT ++ F +T Y PNS +L
Sbjct: 56 YAQRKGYSGTAIFTKFKPLSVKYGM-GMEEHDNEGRLITLEYDDFFLVTCYTPNSKQELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F +Y+ +L ++I+ GDLNV + IDL NP N K AG+T EER
Sbjct: 115 RLDYRMVWEDAFRNYLL-DLNKTKSVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LLD+G D FR+ YPD+E Y++WS+ KS R N GWR+DY L S+ + + + D
Sbjct: 174 MSILLDSGFTDTFRYFYPDKENEYSWWSYFGKS-RERNTGWRIDYFLTSKDMDDRLVDAQ 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I + GS HCPV L +
Sbjct: 233 IHQSILGSDHCPVYLEI 249
>gi|442804155|ref|YP_007372304.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740005|gb|AGC67694.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 251
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 163/259 (62%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RAC+ K +++ + DI +Q+ + Q+ +V + L Y+ +W
Sbjct: 1 MKLVSWNVNGIRACLAK-GFMDFFNSVSADIFCIQETKVQQGQV----QLDLEGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G L T+EKPL+V GI G++ + GRV+TA++ +F +TVY PNS L
Sbjct: 56 YAIRKGYSGTALFTREKPLSVVDGI-GMNEHDNEGRVLTAEYDKFYLVTVYTPNSQRGLT 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F +Y++ L + +II GDLNV + ID+ NP+ N + AG+T EER
Sbjct: 115 RLDYRMKWEDDFREYLK-RLDTTKPVIICGDLNVAHREIDIKNPEANRRNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
L+ +G D+FR+LYPD+ AYT+WS+ +AR N GWR+DY LVS+++ + I+D
Sbjct: 174 MTMLIQSGFTDSFRYLYPDKTDAYTWWSYM-FNAREKNIGWRIDYFLVSDRIRDKIRDAG 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
+ S++ GS HCPV L + +
Sbjct: 233 MYSEIYGSDHCPVFLEIDI 251
>gi|224024813|ref|ZP_03643179.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
gi|224018043|gb|EEF76047.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
Length = 251
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/257 (40%), Positives = 151/257 (58%), Gaps = 7/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC K E + D LQ+ + QE ++ SF S+++
Sbjct: 1 MKLISWNVNGLRACCDK-GFREAFQTLDADFFCLQETKMQEGQLDLSFEGYTSYWNY--- 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + T KPL V YG+ V + GRVIT + F +TVY PNS LK +
Sbjct: 57 AEKKGYSGTAIFTHLKPLNVTYGLGIDVHDHEGRVITLEMDNFYLVTVYTPNSQDGLKRL 116
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+RM W+ F +Y+ EL +++ GDLNV + IDL NP N AG+T +ER F+
Sbjct: 117 DYRMTWEDDFRNYLL-ELDKKKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQ 175
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
LLD G +D FR+ YP++ G Y++WS+R K AR N GWR+DY L S +LA+ ++ I
Sbjct: 176 ILLDAGFIDTFRYFYPEQTGIYSWWSYRFK-AREKNAGWRIDYFLASRRLADKLESAKIH 234
Query: 311 SDVQGSTHCPVVLRLSL 327
+++ GS HCPV + L++
Sbjct: 235 TEIFGSDHCPVEVTLNV 251
>gi|194466723|ref|ZP_03072710.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
gi|194453759|gb|EDX42656.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
Length = 253
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 158/254 (62%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +W+VNGL++ + + VE ++ D LQ+ R + E P + +Y+ +W
Sbjct: 1 MKFISWSVNGLKSAIN-HGFVEDFKRQDADFFCLQRTRLDKGEEP----FQIPNYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KP V YG+ + ++ GR+IT ++ F I VYVP SG KL+
Sbjct: 56 YAEKKGYSGTAIFTKYKPENVIYGMNNSIFDKEGRLITLEYPNFYLIDVYVPVSGEKLQH 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ WD+ F DY+ + L+S+ +II GD++V Q IDLA P ++ AG+T +ER +F
Sbjct: 116 LDYRLDWDRAFLDYV-TNLQSSKPVIIGGDMSVAYQPIDLAEPTEDHHKAGFTKQERSDF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LLD GL D FR+L+P+ GAYT+WS+R AR N GWRLDY LVS+ I++ I
Sbjct: 175 GKLLDAGLTDTFRYLHPNLHGAYTWWSYR-YDARERNVGWRLDYFLVSDVWKERIEEAKI 233
Query: 310 RSDVQGSTHCPVVL 323
SDV+GS+HCP+ L
Sbjct: 234 LSDVKGSSHCPIEL 247
>gi|402835045|ref|ZP_10883630.1| exodeoxyribonuclease III [Selenomonas sp. CM52]
gi|402276400|gb|EJU25510.1| exodeoxyribonuclease III [Selenomonas sp. CM52]
Length = 250
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 153/258 (59%), Gaps = 11/258 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++ +WNVNGLRAC+ K ++ + D+ +Q+ + Q PE L+ Y +W
Sbjct: 1 MRFVSWNVNGLRACLGK-GFMQSFKALDADVFGVQETKMQ----PEQAILELTGYKQYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G G + ++ +PL+V YG+ G+ + GRVI +F F+TVY PNS L+
Sbjct: 56 SAEKKGYSGTAVFSRIEPLSVSYGL-GIEEHDHEGRVIALEFDDLYFVTVYTPNSQRGLE 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W++ F DY+ + L + +++ GDLNV IDL NP N K AG+T EER
Sbjct: 115 RLAYRMTWEEAFRDYLLT-LDAKKPVVVCGDLNVAHTEIDLKNPKTNRKNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL G D FR LYPD+ G YT+WS+ K AR N GWR+DY LVS++LA IK+
Sbjct: 174 MTELLQAGFTDTFRALYPDKTGIYTWWSYLRK-ARETNAGWRIDYFLVSDRLAPKIKEAT 232
Query: 309 IRSDVQGSTHCPVVLRLS 326
I ++V GS HCPV L L
Sbjct: 233 IHNEVFGSDHCPVGLVLG 250
>gi|334127299|ref|ZP_08501227.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
gi|333389799|gb|EGK60957.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
Length = 255
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 150/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++ +WNVNGLRA +KK +E E + D LQ+ + QE + + + F+
Sbjct: 6 MRFVSWNVNGLRAALKK-GFMESFKELDADAFCLQETKMQEGQ---AILDLPGYEQYFYS 61
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+ KPL+V YG+ G+ + GRVIT +F+ +TVY PNS L
Sbjct: 62 AEKKGYSGTAIFTRVKPLSVAYGL-GIEEHDHEGRVITMEFEDIYLVTVYTPNSKNALAR 120
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R++W+ F ++ +LR+ +++ GDLNV IDL NP N + AG+T EER
Sbjct: 121 LDYRLVWEDAFRAFLL-DLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKL 179
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL G +D FR LYPD GAYT+WS+ + AR N GWR+DY LVSE+L + I I
Sbjct: 180 TELLGAGFIDTFRALYPDLTGAYTWWSYL-RHARETNAGWRIDYFLVSEELRDRIAAAEI 238
Query: 310 RSDVQGSTHCPVVLRL 325
+DV GS HCPV L L
Sbjct: 239 HADVFGSDHCPVSLTL 254
>gi|363900200|ref|ZP_09326706.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|395209879|ref|ZP_10398907.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
gi|361957054|gb|EHL10366.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|394704864|gb|EJF12396.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
Length = 252
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 111/258 (43%), Positives = 159/258 (61%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRA + KN +E + N DI LQ+ + QE ++ L Y +W
Sbjct: 3 KLISWNVNGLRAVLGKN-FMEDFQKLNADIFCLQETKLQEGQI----HLDLPGYFQYWNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+PL+V+YGI G++ +Q GRVIT +FK + ITVYVPNS +LK
Sbjct: 58 AIKKGYSGTAIFTKEEPLSVQYGI-GITEHDQEGRVITLEFKDYYLITVYVPNSQNELKR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM ++ F ++I + L +I GDLNV + IDL NPD N AG++ EER F
Sbjct: 117 LPYRMEFEDAFLNFILN-LEKKKPVIYCGDLNVAHEEIDLKNPDTNHLNAGFSDEERAKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L +G +D+FR+ YPD+E Y++WS+R K AR N GWR+DY +VS +L + + I
Sbjct: 176 SRVLSSGYLDSFRYFYPDKEEEYSWWSYRTK-ARDRNVGWRIDYFVVSVKLKDKLLSASI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
+V GS HCPV + L +
Sbjct: 235 HQEVMGSDHCPVEITLDI 252
>gi|431033474|ref|ZP_19491320.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1590]
gi|430564575|gb|ELB03759.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1590]
Length = 250
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 149/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + KE L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAERKGYSGTAIFAKEPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q+IDL N N K AG+T EER
Sbjct: 116 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAAL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ L + D I
Sbjct: 175 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLTPRLADAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HTDIMGSDHCPVELDL 249
>gi|335045714|ref|ZP_08538737.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333759500|gb|EGL37057.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 251
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/258 (43%), Positives = 159/258 (61%), Gaps = 12/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRA + KN +E + + DI LQ+ + Q ++ L Y +W
Sbjct: 3 KLISWNVNGLRAVMGKN-FMEDFRKLDADIFCLQETKLQAGQI----ELDLPGYFQYWNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+P++V YGI GV +Q GRVITA+FK F ITVYVPNS +LK
Sbjct: 58 AVKKGYSGTAIFTKEEPISVSYGI-GVEEHDQEGRVITAEFKDFYLITVYVPNSQGELKR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM ++ F YI + L ++ GDLNV + IDL NPD N +AG++ EER F
Sbjct: 117 LPYRMEFEDAFLSYILN-LEKKKPVVYCGDLNVAHEEIDLKNPDTNHLSAGFSDEERAKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LD+G +D+FR+ YP++E Y++WS+R K AR N GWR+DY +VS++L + I
Sbjct: 176 SRVLDSGYLDSFRYFYPEKE-EYSWWSYRTK-ARERNVGWRIDYFVVSKKLEKKLHSASI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
+++ GS HCPV L L L
Sbjct: 234 HTEIMGSDHCPVELILDL 251
>gi|326202355|ref|ZP_08192224.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325987473|gb|EGD48300.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 253
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 154/257 (59%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
K+ +WNVNGLR+C+ K ++ E + DI +Q+ + QE ++ + Y +W
Sbjct: 2 TKLVSWNVNGLRSCIGKGF-WDFFKEVDADIFCVQETKLQEGQL----ELEIEGYEHYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK KP++ GI G+ + GRVIT +F+ F + VY PNS +L+
Sbjct: 57 YAVKKGYSGTAIFTKIKPVSSSCGI-GIEEHDNEGRVITLEFEEFFLVNVYTPNSKRELE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F +Y++ +L +II GD+NV Q IDL NP N ++AG+T+EER
Sbjct: 116 RLEYRMKWEDDFREYLK-QLEQTKPVIICGDMNVAHQEIDLKNPRSNKRSAGFTMEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL+ G VD FR LYPD+ GAYT+WS+ KS R N GWR+DY VS L + I+
Sbjct: 175 FSQLLEHGFVDTFRMLYPDKTGAYTWWSYMFKS-REKNAGWRIDYFCVSGALKDRIEAAE 233
Query: 309 IRSDVQGSTHCPVVLRL 325
I SD GS HCPV L +
Sbjct: 234 IYSDTMGSDHCPVGLTI 250
>gi|260887970|ref|ZP_05899233.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|330838548|ref|YP_004413128.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|260862221|gb|EEX76721.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|329746312|gb|AEB99668.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
Length = 250
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 153/258 (59%), Gaps = 11/258 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++ +WNVNGLRAC+ K ++ + D+ +Q+ + Q PE L+ Y +W
Sbjct: 1 MRFVSWNVNGLRACLGK-GFMQSFKALDADVFGVQETKMQ----PEQAILELTGYKQYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G G + ++ +PL+V YG+ G+ + GRVI +F F+TVY PNS L+
Sbjct: 56 SAEKKGYSGTAVFSRIEPLSVSYGL-GIEEHDHEGRVIALEFDDLYFVTVYTPNSQRGLE 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W++ F DY+ + L + +++ GDLNV IDL NP N K AG+T EER
Sbjct: 115 RLAYRMTWEEAFRDYLLA-LDAKKPVVVCGDLNVAHTEIDLKNPKTNRKNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL G D FR LYPD+ G YT+WS+ K AR N GWR+DY LVS++LA IK+
Sbjct: 174 MTELLAAGFTDTFRALYPDKTGIYTWWSYLRK-ARETNAGWRIDYFLVSDRLAPKIKEAT 232
Query: 309 IRSDVQGSTHCPVVLRLS 326
I ++V GS HCPV L L
Sbjct: 233 IHNEVFGSDHCPVGLVLG 250
>gi|419718967|ref|ZP_14246261.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
gi|383304836|gb|EIC96227.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
Length = 252
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 154/258 (59%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRA V K +++ + + DI +Q+ + E ++ L Y+ +W
Sbjct: 3 KMISWNVNGLRAAVTK-GFLDFFRDIDADIFCIQESKLSEGQI----ELDLPGYYDYWNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG GV + TK+KP+ V YGI G+ + GRVITA++ F IT Y PNS L
Sbjct: 58 ATKKGYSGVAVFTKDKPINVTYGI-GIDEHDNEGRVITAEYDEFYLITCYTPNSQRGLTR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F DY+ +L +I GDLNV + IDL NP N K AG+T EER
Sbjct: 117 LDYRMTWEDAFLDYVL-KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKM 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L +G VD+FR LYPD+ AY++WS+ AR N GWR+DY +VS +L + IK+ I
Sbjct: 176 DIILSSGFVDSFRVLYPDKTDAYSWWSYMG-GARAKNVGWRIDYFIVSAKLKDRIKEAKI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
S+V GS HCPV L + +
Sbjct: 235 HSEVLGSDHCPVELDIEI 252
>gi|32266427|ref|NP_860459.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
gi|32262477|gb|AAP77525.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
Length = 252
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 105/257 (40%), Positives = 160/257 (62%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC+ K +++ E N DI +Q+ + +++ F +Y +W
Sbjct: 1 MKLISWNVNGLRACMNK-GFMDFFNEVNADIFCIQESKMCKEQAQFHFE----NYKEYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G GV +L+K +P+ V Y + G++ ++ GR+ITA++ F + VY PNS +L+
Sbjct: 56 SAEKKGYSGVVILSKTQPINVAYDM-GITYHDKEGRIITAEYPHFYLVNVYTPNSKRELE 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F ++++ L ++ ++II GDLNV Q IDL NP N + AG+T EER
Sbjct: 115 RLDYRMKWEDDFRAFVKN-LENHKSVIICGDLNVAHQEIDLKNPKTNRRNAGFTDEERNK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LLD G +D FR+ YP GAY++WS+ K AR NN GWR+DY L S+ L ++KD
Sbjct: 174 MSALLDAGFIDTFRYFYPTLTGAYSWWSYMGK-ARENNTGWRIDYFLCSQSLTPSLKDAN 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I + GS HCPV L L
Sbjct: 233 IYPHIFGSDHCPVGLEL 249
>gi|315452849|ref|YP_004073119.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
gi|315131901|emb|CBY82529.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
Length = 255
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 158/259 (61%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNGLRAC++K +++L+ DI +Q+ + Q D+ F +YH FW
Sbjct: 1 MRLVSWNVNGLRACMQK-GFKDFLLKSGADIFCVQETKMQPDQADFVFE----NYHAFWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ K G GV L+K PL V+YG+ G+ + GRVIT +++ F + VY PNS L
Sbjct: 56 SAQKKGYSGVLTLSKSAPLDVRYGL-GLEEHDTEGRVITCEYEYFYLVNVYTPNSQRGLL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +R+ W+ F +++Q+ L S+ ++I GDLNV IDL NP N AG++ ER
Sbjct: 115 RLPYRLQWESVFREFLQN-LASHKEVLICGDLNVAHTEIDLTNPQSNRYNAGFSDPERNA 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL GL+D +RH YPD+ YT+WS+ N+S R N GWR+DY L S+ L + +KD
Sbjct: 174 FGQLLQLGLIDTYRHFYPDKTEVYTWWSYMNQS-RARNIGWRIDYFLASQGLRSQLKDAC 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + + GS HCPV L +S+
Sbjct: 233 IYAHILGSDHCPVGLEMSI 251
>gi|385218180|ref|YP_005779656.1| exodeoxyribonuclease [Helicobacter pylori F16]
gi|317178229|dbj|BAJ56018.1| exodeoxyribonuclease [Helicobacter pylori F16]
Length = 250
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI N+ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHNKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|315641336|ref|ZP_07896412.1| exodeoxyribonuclease III [Enterococcus italicus DSM 15952]
gi|315482909|gb|EFU73429.1| exodeoxyribonuclease III [Enterococcus italicus DSM 15952]
Length = 252
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 152/258 (58%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KKN ++ + + D LQ+ + Q ++ L Y +W
Sbjct: 1 MKLISWNVNGLRAVMKKN-FMDVFTQLDADFFCLQETKLQAGQI----EMDLPGYTQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + KE V YGI +Q GRVIT ++ +F +T Y PNS +LK
Sbjct: 56 YAVKKGYSGTAIFAKEPADNVFYGIGKEEHDQEGRVITLEYPQFYLVTCYTPNSQNELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y+ EL+ + +I+ GDLNV Q IDL N N K AG+T EER F
Sbjct: 116 LDYRMEWEDDFVAYL-DELKKDRPVIVCGDLNVAHQEIDLKNWKTNQKNAGFTNEERAKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G D FRH YP+ GAY++WS+R +AR NN GWR+DY +VS L +++ I
Sbjct: 175 TALLDHGYTDTFRHFYPELTGAYSWWSYR-FNARKNNAGWRIDYFIVSNDLTSHLTSASI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
+D+ GS HCPV L+++L
Sbjct: 234 HADILGSDHCPVELQVTL 251
>gi|229816298|ref|ZP_04446607.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
gi|229808149|gb|EEP43942.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
Length = 280
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 158/277 (57%), Gaps = 26/277 (9%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
+K+++WNVNGLRA +KK+ I+ E + DI+ LQ+ + QE +V L YH W
Sbjct: 9 LKLASWNVNGLRAVLKKDPSFTDIVAELDADILGLQETKLQEGQV----ELDLPGYHQVW 64
Query: 131 IGSD-KGQGGVGLLTKEKPLTVKYG------------------IPGVSNQRGRVITAKFK 171
++ KG G + +E+PL+V++ + V+ GRV +F+
Sbjct: 65 SYAERKGYSGTAVFCREEPLSVRHADAVLAAGRAAGLSDDELELVAVAATEGRVCALEFE 124
Query: 172 RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQS-ELRSNSNIIISGDLNVCLQSIDLA 230
RF F+ VY PN+ +L + RM WD + +++S E + ++ GD NV IDL
Sbjct: 125 RFWFVDVYTPNAQGELARLSTRMAWDDAYRAFLRSLEDETGKPVVTCGDFNVAHNEIDLK 184
Query: 231 NPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWR 290
NP N AG++ EER F ELLD G D FR P+ EGAY++WS+R +AR NN GWR
Sbjct: 185 NPKSNRGNAGFSDEERAKFGELLDAGYTDTFRAANPNLEGAYSWWSYR-FNARKNNAGWR 243
Query: 291 LDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+DY LVS+ +A+ ++ C IR+D+ GS HCPV L + L
Sbjct: 244 IDYFLVSDAIADRVRACGIRNDIFGSDHCPVTLEIEL 280
>gi|386753431|ref|YP_006226650.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|386754997|ref|YP_006228215.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
gi|384559689|gb|AFI00157.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|384561255|gb|AFI01722.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
Length = 250
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+D+ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQDQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VYVPNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|149180849|ref|ZP_01859351.1| exodeoxyribonuclease [Bacillus sp. SG-1]
gi|148851368|gb|EDL65516.1| exodeoxyribonuclease [Bacillus sp. SG-1]
Length = 253
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 158/258 (61%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACVKK +++ + + DI +Q+ + QE ++ + L +YH +W
Sbjct: 1 MKIVSWNVNGIRACVKK-GFMDFFKDVDADIFCIQESKLQEGQI----QLDLENYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL+V YGI ++ GR IT +F+ F + VY PNS L
Sbjct: 56 YAERKGYSGTAVFTKQEPLSVSYGIGEDDDEPEGRCITLEFEDFYLLNVYTPNSKRDLSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
++ R+ W++ YI+ EL +I GDLNV IDL NP N +G+T EER
Sbjct: 116 LEDRLHWEERVRAYIK-ELDEIKPVIYCGDLNVAHNEIDLRNPKSNHGNSGFTTEEREKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL+ G VD+FRHLYP+++ +YT+WS+ +K R N GWR+DY +VS++L +++KD +
Sbjct: 175 STLLNEGFVDSFRHLYPEKDQSYTWWSYMSK-VRERNIGWRIDYFIVSDRLKDSLKDAGM 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
+DV GS HCPV + +
Sbjct: 234 HTDVLGSDHCPVYIEIDF 251
>gi|330996654|ref|ZP_08320532.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
gi|329572726|gb|EGG54359.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
Length = 250
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 148/255 (58%), Gaps = 7/255 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRAC +K E + D LQ+ + QE ++ F S+++
Sbjct: 1 MKFISWNVNGLRACCEK-GFKESFAALDADFFCLQETKMQEGQLDLEFEGYRSYWNY--- 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + ++ PL V YG+ + R GRVIT + F +TVY PNS LK +
Sbjct: 57 AEKKGYSGTAIFSRHAPLNVTYGLGLEEHDREGRVITLEMPDFFLVTVYTPNSQDGLKRL 116
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+RM W++ F Y+ +L + +I+ GDLNV + IDL NP N K AG+T EER F
Sbjct: 117 DYRMQWEEAFRAYLL-QLDTRKPVIVCGDLNVAHREIDLKNPKSNRKNAGFTDEEREKFG 175
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
LLD+G D FR YPD EG Y++WS+R K AR N GWR+DY LVS++L +K I
Sbjct: 176 ILLDSGFTDTFRFFYPDREGIYSWWSYRFK-AREKNAGWRIDYFLVSKRLEAQLKSATIH 234
Query: 311 SDVQGSTHCPVVLRL 325
+++ GS HCPV + L
Sbjct: 235 TEIFGSDHCPVEVDL 249
>gi|160915303|ref|ZP_02077516.1| hypothetical protein EUBDOL_01312 [Eubacterium dolichum DSM 3991]
gi|158433102|gb|EDP11391.1| exodeoxyribonuclease III [Eubacterium dolichum DSM 3991]
Length = 252
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 105/257 (40%), Positives = 155/257 (60%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RAC+KK +++ + DI +Q+ + Q P Y +
Sbjct: 1 MKLVSWNVNGIRACMKK-GFMDFFQAIDADIFCIQETKMQ----PGQLEIETDGYVQYMN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G GV + +K++PL+V YG+ G+ + GRVIT ++ F + VY PNS L
Sbjct: 56 SADKKGYSGVMVFSKKEPLSVSYGL-GIDEHDHEGRVITCEYDTFYLVCVYTPNSKDGLL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+Q L+ + ++++ GDLNV Q IDL NP N + AG+T EER
Sbjct: 115 RLDYRMQWEDAFRAYLQ-RLKESKSVVVCGDLNVAHQEIDLKNPKTNRRNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LL +G VD++R+LYPD+E Y++WS+R SAR N GWR+DY LVSE I++
Sbjct: 174 MTTLLSSGFVDSYRYLYPDKENVYSWWSYRF-SAREKNAGWRIDYFLVSEDAKERIEEAQ 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +D+ GS HCPV L
Sbjct: 233 IHTDIYGSDHCPVSLSF 249
>gi|402846244|ref|ZP_10894559.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
gi|402268322|gb|EJU17703.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
Length = 250
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRA K + I E + D + LQ+ + Q ++ +S+++
Sbjct: 1 MKFISWNVNGLRAVFTK-GFPDIIKELDADFVCLQETKMQAGQLDADLPSYISYWNY--- 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+ +PL+V YGI G+ +Q GRVIT ++ F +TVY PNS L+
Sbjct: 57 AVKKGYSGTAIYTRHEPLSVSYGI-GIEEHDQEGRVITLEYPEFFLVTVYTPNSQDDLRR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y++ L + +II GDLNV + IDL NP N + AG+T EER
Sbjct: 116 LDYRMTWEDAFRSYLKG-LDAKKPVIICGDLNVAHKEIDLKNPKSNRRNAGFTDEERGKL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ELLD G +D FR+ YPD+ Y++WS+R K AR N GWR+DY + SE+LA ++ I
Sbjct: 175 QELLDAGFIDTFRYFYPDQADIYSWWSYRFK-ARERNSGWRIDYFVASERLAPRLQGAAI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+++ GS HCPV L L
Sbjct: 234 HTEIYGSDHCPVELIL 249
>gi|188528295|ref|YP_001910982.1| exodeoxyribonuclease III [Helicobacter pylori Shi470]
gi|188144535|gb|ACD48952.1| exodeoxyribonuclease [Helicobacter pylori Shi470]
Length = 250
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+D+ F+ Y FW
Sbjct: 1 MKLVSWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQDQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VYVPNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFELFYLVNVYVPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSHPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420411264|ref|ZP_14910396.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
gi|393030053|gb|EJB31132.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
Length = 250
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVNADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKT-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|373471031|ref|ZP_09562109.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371761191|gb|EHO49827.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 259
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 153/258 (59%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRA V K +++ + + DI +Q+ + E ++ L Y+ +W
Sbjct: 10 KMISWNVNGLRAAVTK-GFLDFFRDIDADIFCIQESKLSEGQI----ELDLPGYYDYWNY 64
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV + TK+KPL V YGI G+ + GRVITA+++ F IT Y PNS L
Sbjct: 65 AQKKGYSGVAVFTKDKPLNVTYGI-GIEEHDNEGRVITAEYEDFYMITCYTPNSQRGLTR 123
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F YI EL N +I GDLNV IDL NP N K AG+T EER
Sbjct: 124 LEYRMTWEDAFLKYIL-ELEKNKPVIFCGDLNVAHTEIDLKNPKTNRKNAGFTDEERAKM 182
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L +G VD+FR LYPD+ AY++WS+ AR N GWR+DY +VS +L + IK+ I
Sbjct: 183 DVILSSGFVDSFRVLYPDKTDAYSWWSYMG-GARAKNVGWRIDYFIVSAKLKDRIKEAKI 241
Query: 310 RSDVQGSTHCPVVLRLSL 327
S++ GS HCPV L + +
Sbjct: 242 HSEIFGSDHCPVELDIEI 259
>gi|328947089|ref|YP_004364426.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
gi|328447413|gb|AEB13129.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
Length = 251
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 153/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA + KN +E + D LQ+ + Q ++ + L YH FW
Sbjct: 1 MKFISWNVNGLRAVMGKN-FMEAFGSLDADFFCLQETKLQAGQI----QMELPDYHQFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +P++ YGI G++ + GRVIT ++++F +TVY PNS +L+
Sbjct: 56 YAEKKGYSGTAVFTKHEPISASYGI-GIAEHDTEGRVITLEYEKFFLVTVYTPNSQDELR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F Y+++ L +I+ GD+NV + ID+ NP N + AG+T EER
Sbjct: 115 RLEYRMKWEDDFRAYLKT-LALKKGVIVCGDMNVAHEEIDIKNPKTNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL +G D+FRH YPD G Y++WS+R AR N GWR+DY LVS+ + + +
Sbjct: 174 MTELLSSGFTDSFRHFYPDTAGVYSWWSYRFH-AREKNTGWRIDYFLVSDSIKDKMTGAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCPV L +
Sbjct: 233 IHTEILGSDHCPVELDMEF 251
>gi|283796572|ref|ZP_06345725.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|291075985|gb|EFE13349.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|295092540|emb|CBK78647.1| exodeoxyribonuclease III [Clostridium cf. saccharolyticum K10]
gi|295115277|emb|CBL36124.1| exodeoxyribonuclease III [butyrate-producing bacterium SM4/1]
Length = 251
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 151/253 (59%), Gaps = 9/253 (3%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG 132
K+ +WNVNGLRACV K ++ + + DI +Q+ + Q ++ + Y+ +W
Sbjct: 3 KMISWNVNGLRACVGK-GFLDVFRKLDADIFCIQESKLQAGQID----LDIPGYYQYWSY 57
Query: 133 SDK-GQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
+DK G G L +KE+P++V YG+ + GRVITA+++ + +T Y PNS +L +
Sbjct: 58 ADKKGYSGTALFSKEEPISVVYGLGIDAHDHEGRVITAEYEDYYVLTCYTPNSQNELARL 117
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+RM W+ F Y++ +L +I GDLNV + IDL NP N K AG+T EER F
Sbjct: 118 PYRMEWEDAFLAYLK-KLEEKKPVIFCGDLNVAHREIDLKNPRTNRKNAGFTDEERGKFS 176
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
LLD G +D +RH YPD EG Y++WS+R K AR N GWR+DY VSE L + + I
Sbjct: 177 ALLDAGFIDTYRHFYPDTEGVYSWWSYRFK-AREKNAGWRIDYFCVSESLEDRLVSASIH 235
Query: 311 SDVQGSTHCPVVL 323
+++ GS HCPV L
Sbjct: 236 TEIMGSDHCPVEL 248
>gi|310643609|ref|YP_003948367.1| exodeoxyribonuclease iii xth [Paenibacillus polymyxa SC2]
gi|309248559|gb|ADO58126.1| Exodeoxyribonuclease III Xth [Paenibacillus polymyxa SC2]
gi|392304359|emb|CCI70722.1| exodeoxyribonuclease III [Paenibacillus polymyxa M1]
Length = 254
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 103/255 (40%), Positives = 146/255 (57%), Gaps = 7/255 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K Y+ E + DI +Q+ + QE ++ +++ Y +W
Sbjct: 1 MKLISWNVNGLRACVTK-GFYTYLKETDADIFCVQETKLQEGQI---LMENMEEYAQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + TK KPL+V YG+ GR IT +F++F + VY PN+ L +
Sbjct: 57 YAEKKGYSGTAIFTKIKPLSVHYGLEENEEPEGRTITLEFEKFYLVNVYTPNTKRDLSRL 116
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+R+ W+ F Y+Q +L + +II GDLNV Q IDL N N AG+T EER
Sbjct: 117 PYRLEWEDRFRSYLQ-QLDAQKPVIICGDLNVAHQEIDLKNAKANYGNAGFTPEERDRMS 175
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+LL+ G +D FR+ YPD Y++WS+ K R N GWR+DY LVSE+L + D I
Sbjct: 176 QLLNAGFIDTFRYFYPDRTDVYSWWSYMPK-VRERNIGWRIDYFLVSERLRPLLMDASID 234
Query: 311 SDVQGSTHCPVVLRL 325
+ GS HCPV+L L
Sbjct: 235 CHITGSDHCPVILDL 249
>gi|425790226|ref|YP_007018143.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
gi|425628541|gb|AFX89081.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
Length = 250
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VYVPNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMGWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELLD G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLDAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|386751875|ref|YP_006225095.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
gi|384558133|gb|AFH98601.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
Length = 250
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+D+ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQDQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VYVPNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFELFYLVNVYVPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSHPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|109946643|ref|YP_663871.1| exodeoxyribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|109713864|emb|CAJ98872.1| exodeoxyribonuclease [Helicobacter acinonychis str. Sheeba]
Length = 250
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 154/256 (60%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + DI +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADIFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GR+IT +F+ F + +Y PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRIITCEFESFYLVNIYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LNYRMSWEVEFRRFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+TG +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNTGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNSLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|257883889|ref|ZP_05663542.1| AP endonuclease [Enterococcus faecium 1,231,501]
gi|430852149|ref|ZP_19469884.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1258]
gi|257819727|gb|EEV46875.1| AP endonuclease [Enterococcus faecium 1,231,501]
gi|430542731|gb|ELA82839.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1258]
Length = 250
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 149/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K+ L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +II GDLNV Q+IDL N N K AG+T EER
Sbjct: 116 LDYRLEWEEAFYNYLEN-LKKQKPVIICGDLNVAHQTIDLKNWKTNQKNAGFTPEERAAL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G VD FR+ YP +EG Y++W++R S R NN GWR+DY L S+ L + D I
Sbjct: 175 SRLLDNGFVDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLASKDLEPRLADAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HTDIMGSDHCPVELDL 249
>gi|297824099|ref|XP_002879932.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325771|gb|EFH56191.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
Length = 550
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 116/273 (42%), Positives = 163/273 (59%), Gaps = 16/273 (5%)
Query: 67 PYTTK-VKVSTWNVNGLRACVKKNA--CVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
P TK VKV TWNVNGLRA +K + ++ EN DI+ LQ+ + Q +V E +
Sbjct: 282 PEGTKCVKVMTWNVNGLRALLKLESFSALQLAQRENFDILCLQETKLQVKDVEEIKNTLI 341
Query: 124 SHY-HMFWIGS--DKGQGGVGLLTKEKPLTVKYGIPGVS----NQRGRVITAKFKRFTFI 176
Y H FW S G G ++++ KPL+V+YG G+S + GR++TA+F F I
Sbjct: 342 DGYDHSFWSCSVSKLGYSGTAIISRIKPLSVRYGT-GLSGSDHDMEGRIVTAEFDSFYLI 400
Query: 177 TVYVPNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKN 235
YVPNSG LK + +R+ WD+ ++I+ EL + ++++GDLN + ID+ NP N
Sbjct: 401 NTYVPNSGDGLKRLSYRIEEWDRTLSNHIK-ELEKSKPVVLTGDLNCAHEEIDIFNPAGN 459
Query: 236 VKTAGYTVEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYH 294
+ AG+T+EER++F LD G VD FR +P G YTYW +R+ R N+GWRLDY
Sbjct: 460 KRNAGFTIEERQSFGANFLDKGFVDTFRKQHPGVVG-YTYWGYRH-GGRKTNRGWRLDYF 517
Query: 295 LVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
LVSE +A N+ D I D+ GS HCP+ L L L
Sbjct: 518 LVSESIAANVHDSYILPDINGSDHCPIGLILKL 550
>gi|332882010|ref|ZP_08449645.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357048168|ref|ZP_09109722.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
gi|332679934|gb|EGJ52896.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355528751|gb|EHG98229.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
Length = 250
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 150/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRAC +K E + D LQ+ + QE ++ F S+++
Sbjct: 1 MKFISWNVNGLRACCEK-GFKESFAALDADFFCLQETKMQEGQLDLEFEGYRSYWNY--- 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + ++ PL V YG+ G+ ++ GRVIT + F +TVY PNS LK
Sbjct: 57 AEKKGYSGTAIFSRHAPLNVTYGL-GLEEHDKEGRVITLEMPDFFLVTVYTPNSQDGLKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W++ F Y+ +L + +I+ GDLNV + IDL NP N K AG+T EER F
Sbjct: 116 LDYRMQWEEAFRAYLL-QLDTRKPVIVCGDLNVAHREIDLKNPKSNRKNAGFTDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD+G D FR YPD EG Y++WS+R K AR N GWR+DY LVS++L +K I
Sbjct: 175 GILLDSGFTDTFRFFYPDREGIYSWWSYRFK-AREKNAGWRIDYFLVSKRLEAQLKSATI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+++ GS HCPV + L
Sbjct: 234 HTEIFGSDHCPVEVDL 249
>gi|346314587|ref|ZP_08856106.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|373124043|ref|ZP_09537885.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|422327142|ref|ZP_16408169.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium
6_1_45]
gi|345906322|gb|EGX76051.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|371659875|gb|EHO25135.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|371663836|gb|EHO29020.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium
6_1_45]
Length = 254
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/260 (39%), Positives = 157/260 (60%), Gaps = 17/260 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQ----EDEVPESFRKSLSHYH 127
+++ +WNVNG+RAC++K +++ E + D+ +Q+ + Q E E P +Y
Sbjct: 1 MRLVSWNVNGIRACMQK-GFMDFFKEIDADVFCIQETKMQPGQLEIETP-------GYYQ 52
Query: 128 MFWIGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
KG G + +K+KPL+V YG+ G+ + GRVIT +++ F + VY PNS
Sbjct: 53 YMNSAEKKGYSGTMVFSKQKPLSVTYGL-GIEEHDHEGRVITCEYEDFYLVCVYTPNSKD 111
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +D+RM+W+ F Y+ +L ++++ GDLNV + IDL NP N + AG+T EE
Sbjct: 112 GLLRLDYRMVWEDAFRAYLH-KLNETKSVLVCGDLNVAHKEIDLKNPKTNRRNAGFTDEE 170
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R LL++G +D+FR+LYP++EG Y++WS+R K AR N GWR+DY LVSE I+
Sbjct: 171 RGKMSVLLESGFIDSFRYLYPEQEGIYSWWSYRFK-AREKNAGWRIDYFLVSEDAKEAIR 229
Query: 306 DCIIRSDVQGSTHCPVVLRL 325
+ I +D+ GS HCPV L
Sbjct: 230 EARIHTDIYGSDHCPVSLEF 249
>gi|315652833|ref|ZP_07905807.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485035|gb|EFU75443.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
Length = 259
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 153/258 (59%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRA V K +++ + + DI +Q+ + E ++ L Y+ +W
Sbjct: 10 KMISWNVNGLRAAVTK-GFLDFFRDIDADIFCIQESKLSEGQI----ELDLPGYYDYWNY 64
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG GV + TK+KP+ V YGI G+ + GRVITA++ F IT Y PNS L
Sbjct: 65 ATKKGYSGVAVFTKDKPINVTYGI-GIDEHDNEGRVITAEYDEFYLITCYTPNSQRGLTR 123
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F DY +L +I GDLNV + IDL NP N K AG+T EER
Sbjct: 124 LDYRMTWEDAFLDY-ALKLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKM 182
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L +G VD+FR LYPD+ AY++WS+ AR N GWR+DY +VS +L + IK+ I
Sbjct: 183 DIILSSGFVDSFRLLYPDKTDAYSWWSYMG-GARAKNVGWRIDYFIVSAKLKDRIKEAKI 241
Query: 310 RSDVQGSTHCPVVLRLSL 327
S+V GS HCPV L + +
Sbjct: 242 HSEVLGSDHCPVELDIEI 259
>gi|320528523|ref|ZP_08029680.1| exodeoxyribonuclease III [Solobacterium moorei F0204]
gi|320131109|gb|EFW23682.1| exodeoxyribonuclease III [Solobacterium moorei F0204]
Length = 251
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/257 (40%), Positives = 157/257 (61%), Gaps = 7/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRA +KK ++ E++ D ALQ+ + Q D++ ++ + YHM+
Sbjct: 1 MKFISWNVNGLRAAMKK-GFADFFHEQDADFFALQETKMQPDQLEDAMK--FEGYHMYMN 57
Query: 132 GSD-KGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
++ KG G + TK +PL+V Y I G + GRVIT ++ F F+ YVPNS L +
Sbjct: 58 SAERKGYSGTLIYTKHEPLSVTYEIEGDVTKEGRVITLEYPDFYFVCAYVPNSKDGLLRL 117
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+R+ W++ ++ EL +I +GDLNV + IDL NP N K G++ EER
Sbjct: 118 PYRIEWEEMLRKHLM-ELDKKKPVIYTGDLNVAHEEIDLKNPATNHKNPGFSDEERAAMT 176
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+LLD+G D FR LYPD + +++WS+R K AR N GWR+DY LVSE+L N++D +I
Sbjct: 177 KLLDSGFSDTFRELYPDTQ-KFSWWSYRMK-ARERNVGWRIDYFLVSERLLANVQDALIF 234
Query: 311 SDVQGSTHCPVVLRLSL 327
+ +GS HCPV L ++L
Sbjct: 235 DETEGSDHCPVGLNINL 251
>gi|373493819|ref|ZP_09584429.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
gi|371969524|gb|EHO86969.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
Length = 249
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/257 (40%), Positives = 149/257 (57%), Gaps = 9/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA +KK + + E + D +Q+ + QE + L YH ++
Sbjct: 1 MKFVSWNVNGLRAVLKK-GFEDIVKEFDADFFCIQETKMQEGQAD----VDLPGYHQYFS 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + TK +PL+V Y G + GR + ++ +F + VYVPN+ +LK +
Sbjct: 56 YAEKKGYSGTAIFTKHEPLSVTYNFEG-HDDEGRAVLLEYDKFYLLNVYVPNAQPELKRL 114
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
++RM W+ + SEL ++++ GDLNV + IDL NP N G++ EER
Sbjct: 115 EYRMQWEDDLRAML-SELAKKKHVVMCGDLNVAHEEIDLKNPKTNRGNPGFSDEERAKMT 173
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
ELL G D FRHLYP++EGAY++WS+R +AR NN GWR+DY +V E L + IK+ I
Sbjct: 174 ELLGAGFTDTFRHLYPEQEGAYSWWSYRG-NARKNNTGWRIDYFVVDEGLKDKIKEAAIH 232
Query: 311 SDVQGSTHCPVVLRLSL 327
DV GS HCPV L L +
Sbjct: 233 PDVMGSDHCPVSLELDI 249
>gi|355574795|ref|ZP_09044431.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
gi|354818271|gb|EHF02763.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
Length = 261
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 153/258 (59%), Gaps = 9/258 (3%)
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEVPESFRKSLSHYHMF 129
++++ +WNVNGLRA +KK+ I E + D+ A+Q+ + QE ++ L YH
Sbjct: 8 ELRLVSWNVNGLRAVMKKDPSFPQIFEAADADVFAIQETKLQEGQLD----LDLPGYHQT 63
Query: 130 W-IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKL 187
W KG G + ++E+PL V I ++ GRV +F+R+ F+ VY PNS L
Sbjct: 64 WNYAERKGYSGTAVFSREEPLRVIRQIGCEFADDEGRVCALEFERYWFVDVYTPNSKNGL 123
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+D RM+WD+ + +++ S L ++ GD NV + IDL NPD N AG++ EER
Sbjct: 124 LRLDERMVWDRSYREFL-SGLAKEKPVVTCGDFNVAHEEIDLKNPDTNHMNAGFSDEERE 182
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
F +LL+ G VD+FR LYPD E AY++WS+R + AR N GWR+DY LVSE A+ I +
Sbjct: 183 GFGKLLEAGFVDSFRRLYPDREDAYSWWSYRMR-ARERNVGWRIDYFLVSEDAADGIVEA 241
Query: 308 IIRSDVQGSTHCPVVLRL 325
I DV GS HCPV L L
Sbjct: 242 SILDDVYGSDHCPVQLTL 259
>gi|154497021|ref|ZP_02035717.1| hypothetical protein BACCAP_01314 [Bacteroides capillosus ATCC
29799]
gi|150273420|gb|EDN00548.1| hypothetical protein BACCAP_01314 [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 250
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 149/254 (58%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC+ K +E + DI ++Q+ + Q P L Y +W
Sbjct: 1 MKLISWNVNGLRACLGK-GFLESFAALDADIFSIQETKMQ----PGQAELDLPGYKQYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
++K G G + T+ +PL V YGI + R GR IT +F+ F + YVPN+ +L
Sbjct: 56 SAEKKGYSGTAVFTRLEPLNVTYGIGSEEHDREGRAITLEFEDFYLVNCYVPNAQRELTR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ Y+ EL S +I GDLNV Q IDL N N AG+T EER
Sbjct: 116 LDWRMEWEDALRAYLL-ELDSRKPVIYCGDLNVAHQEIDLKNAKSNRGNAGFTDEERAKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL+ G VD+FRHLYPD+ GAY++WS+ AR N GWR+DY LVS+ +A+ I D II
Sbjct: 175 TQLLEAGFVDSFRHLYPDKTGAYSWWSYMFH-AREKNAGWRIDYFLVSKSIADKIGDSII 233
Query: 310 RSDVQGSTHCPVVL 323
++ GS HCPV L
Sbjct: 234 HPEIMGSDHCPVEL 247
>gi|167771017|ref|ZP_02443070.1| hypothetical protein ANACOL_02371 [Anaerotruncus colihominis DSM
17241]
gi|167666687|gb|EDS10817.1| exodeoxyribonuclease III [Anaerotruncus colihominis DSM 17241]
Length = 250
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 153/257 (59%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC+ K +++ + D + LQ+ + +++ L Y FW
Sbjct: 1 MKLVSWNVNGLRACLGK-GFLDFFSAADADAVCLQETKMHQEQAD----LELPGYQQFWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G G + T+ PL V YGI G++ + GRVIT +++ F + Y PN+ +L
Sbjct: 56 SAEKKGYSGTAVFTRVPPLNVTYGI-GMAEHDSEGRVITVEYEPFYLVNCYTPNAQRELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F Y+ S L + +++ GDLNV Q IDL NP N + AG++ EER
Sbjct: 115 RLEYRMKWEDDFRAYLMS-LDAKKPVVLCGDLNVAHQEIDLKNPKTNRRNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL G VD FR LYPD GAYT+WS+ + AR N GWR+DY +VSE+L + D
Sbjct: 174 MTELLAGGFVDTFRALYPDVTGAYTWWSYLRR-ARDTNAGWRIDYFIVSERLRGAVHDSR 232
Query: 309 IRSDVQGSTHCPVVLRL 325
IR+DV GS HCPV L L
Sbjct: 233 IRADVMGSDHCPVELDL 249
>gi|385222881|ref|YP_005772014.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
gi|317011660|gb|ADU85407.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 250
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + DI +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADIFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LNYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420457745|ref|ZP_14956558.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
gi|393072264|gb|EJB73043.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
Length = 250
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVNADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|402836561|ref|ZP_10885097.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
gi|402271037|gb|EJU20293.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
Length = 249
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 149/259 (57%), Gaps = 16/259 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEV---PESFRKSLSHYH 127
+K +WNVNG RA +KK E + ++ + D LQ+ + QE + PE YH
Sbjct: 1 MKFISWNVNGFRAVLKKG--FEDVFKDLDADFFCLQETKMQEGQADFHPEG-------YH 51
Query: 128 MFWIGSDK-GQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIK 186
++ +DK G G + KE PL V YGI G N GRVIT ++ F I YVPNS +
Sbjct: 52 EYYSYADKKGYSGTAIFAKEAPLRVAYGIEGKHNDEGRVITLEYDDFYLICAYVPNSQDE 111
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
LK ID+RM ++ Y+ S+L ++ GDLNV + IDL NP N AG++ EER
Sbjct: 112 LKRIDYRMEYEDDLRAYM-SKLDKVKPVVYCGDLNVAHEEIDLKNPKSNRGNAGFSDEER 170
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
ELL G D +RHL+PD G Y++WS+R +AR NN GWR+DY +VS +L IK+
Sbjct: 171 SKMTELLGAGFTDTYRHLHPDTPGVYSWWSYRF-NARANNAGWRIDYFIVSNRLETKIKE 229
Query: 307 CIIRSDVQGSTHCPVVLRL 325
I +DV GS HCPV L L
Sbjct: 230 AAILTDVYGSDHCPVSLVL 248
>gi|386747928|ref|YP_006221136.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
gi|384554170|gb|AFI05926.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
Length = 250
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 152/258 (58%), Gaps = 11/258 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMNK-GFMDFFTSVNADVFCIQESKMQQEQNTFDFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG GV +K +PL V YGI G+ + GRV+T +F +F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFSKTEPLNVSYGI-GIEEHDTEGRVVTCEFDKFYLVNVYTPNSQRALA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER
Sbjct: 115 RLEYRMSWEVEFRKFLKN-LELQKPVIVCGDLNVAHNEIDLENPKANRKNAGFSDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G +D FRH YP +E AYT+WS+ + AR N GWR+DY L S+ L +KD
Sbjct: 174 FSELLNAGFIDTFRHFYPTKEKAYTWWSYM-QQARDKNIGWRIDYFLCSKSLKTELKDAK 232
Query: 309 IRSDVQGSTHCPVVLRLS 326
I ++ GS HCPV L L+
Sbjct: 233 IYENILGSDHCPVGLELA 250
>gi|347525140|ref|YP_004831888.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
gi|345284099|gb|AEN77952.1| Exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
Length = 254
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/253 (41%), Positives = 151/253 (59%), Gaps = 9/253 (3%)
Query: 76 TWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSD 134
+WNVNGLRA +KKN E + + D +Q+ + QE +V L YH +W
Sbjct: 5 SWNVNGLRAVLKKNFS-EVFEKLDADFFCIQETKLQEGQV----ELDLPGYHQYWNYAER 59
Query: 135 KGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFR 193
KG G + TK +P +V YGI + GRVIT ++ F + Y PNS KLK +DFR
Sbjct: 60 KGYSGTAIFTKHEPQSVSYGIQNSEFDHEGRVITLEYASFYLVCCYSPNSQPKLKRLDFR 119
Query: 194 MIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELL 253
M ++ F +Y+ + L+ +I+ GDLNV + IDL NP N K AG++ EER LL
Sbjct: 120 MGFEDAFLNYLNA-LKEKKPVIMCGDLNVAHEEIDLKNPKTNHKNAGFSNEERSCMTRLL 178
Query: 254 DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDV 313
+ G +D FR +PDE G Y++WS+R +AR NN GWR+DY +VSE L +++++ I +D+
Sbjct: 179 ENGYLDTFRFFHPDETGIYSWWSYR-FNARKNNAGWRIDYFIVSESLKDSLENAEILTDI 237
Query: 314 QGSTHCPVVLRLS 326
GS HCPV+L +
Sbjct: 238 MGSDHCPVLLETA 250
>gi|385229195|ref|YP_005789128.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
gi|344335633|gb|AEN16077.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
Length = 250
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + DI +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADIFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GR+IT +F+ F + VYVPNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRIITCEFESFYLVNVYVPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|407016220|gb|EKE29973.1| Exodeoxyribonuclease III Xth [uncultured bacterium (gcode 4)]
Length = 255
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 152/259 (58%), Gaps = 7/259 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVN +RA ++K ++YI E PDI+ALQ+++ ED+ P + Y ++W
Sbjct: 1 MKFISWNVNWIRAAIQK-GFLDYINNEKPDIIALQEVKATEDQFPARMDMEMMWYSVYWN 59
Query: 132 GSDKGQ-GGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ K + TKEKPL+V Y + + R+IT ++++F F+TVY PNS +L+
Sbjct: 60 SASKNWYSWTAVFTKEKPLSVSYWLWMEEHDNEWRIITVEYEKFYFVTVYTPNSKRELER 119
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++R +WD F D+++ L + I + DLNV + IDL NP N A +T EER F
Sbjct: 120 LEYRQLWDSLFLDHMR-RLEAIKPIFVCWDLNVAHKEIDLTNPKPNRWNAWFTDEERMGF 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWS-FRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
++ LD G +D FR YPD+ G Y++WS F N AR N GWR+DY L S L N+K+
Sbjct: 179 QKFLDAGFIDTFRFFYPDKAGEYSWWSNFAN--ARSRNIGWRIDYFLASWILKENLKNAF 236
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I GS HCPV + + +
Sbjct: 237 IMQQTLGSDHCPVWIEVEI 255
>gi|336114106|ref|YP_004568873.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
gi|335367536|gb|AEH53487.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
Length = 251
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 151/254 (59%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRACVKK + + E DI +Q+ + QE ++ L Y+ +W
Sbjct: 1 MKFVSWNVNGLRACVKK-GFLAFFAETGADIFCVQETKLQEGQIA----LDLDGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGI-PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL+V+YG+ + GR++T +++ F + VY PNS L
Sbjct: 56 YAERKGYSGTAVFTKKEPLSVRYGVGENRTEPEGRILTLEYEDFYLVNVYTPNSQRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +R+ W+ Y+ ++L +I+ GD+NV Q IDL N N+ +G+T EER
Sbjct: 116 LGYRLEWENRMRAYL-TDLDKKKPVIVCGDMNVAHQEIDLKNAKSNIGNSGFTAEERDKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL++G +D+FR+ YP+ EGAYT+WS+ NK R N GWR+DY LVS++LA +K +
Sbjct: 175 TGLLNSGFIDSFRYFYPEREGAYTWWSYMNK-VRERNIGWRIDYFLVSKRLAGRLKGAGM 233
Query: 310 RSDVQGSTHCPVVL 323
++ GS HCPV L
Sbjct: 234 YPEIMGSDHCPVFL 247
>gi|15646134|ref|NP_208316.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|410024766|ref|YP_006894019.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|410502530|ref|YP_006937057.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
gi|410683049|ref|YP_006935451.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|419417169|ref|ZP_13957646.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|2314703|gb|AAD08563.1| exodeoxyribonuclease (lexA) [Helicobacter pylori 26695]
gi|384373631|gb|EIE29102.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|409894690|gb|AFV42748.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|409896423|gb|AFV44345.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|409898081|gb|AFV45935.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
Length = 250
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420466271|ref|ZP_14965031.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
gi|393078846|gb|EJB79584.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
Length = 250
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N DI +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVNADIFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|385230800|ref|YP_005790716.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
gi|344337238|gb|AEN19199.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
Length = 250
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + DI +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADIFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VYVPNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420531938|ref|ZP_15030309.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
gi|393135788|gb|EJC36183.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
Length = 250
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVNADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|403378650|ref|ZP_10920707.1| exodeoxyribonuclease [Paenibacillus sp. JC66]
Length = 256
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/255 (39%), Positives = 148/255 (58%), Gaps = 6/255 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K +Y + + D+ +Q+ + QE ++ ++ H +W
Sbjct: 1 MKLVSWNVNGLRACVNKGCFTDYFEQIDADVFCVQETKMQEGQLSLELGDNI---HSYWN 57
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + +K +P++V+YG+ GR++T +F F + VY PN+ L +
Sbjct: 58 YALKKGYSGTAVFSKIEPISVRYGLEEDEEAEGRILTLEFASFYLVNVYTPNAKRDLSRL 117
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+R+ W+ F YI +L +II GDLNV Q ID+ N NV +G+T EER F
Sbjct: 118 PYRLEWEDRFRKYI-VQLDEKKPVIICGDLNVAHQEIDIKNAKSNVGNSGFTHEERGKFN 176
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
ELL G +D+FR LYPD AYT+WSF K R N GWR+DY L+SE+L ++K+ I
Sbjct: 177 ELLGAGFLDSFRELYPDRTDAYTWWSFMPK-VRERNIGWRIDYFLISEKLRPHLKEAGID 235
Query: 311 SDVQGSTHCPVVLRL 325
S + GS HCPV + L
Sbjct: 236 SHIMGSDHCPVYVEL 250
>gi|384895292|ref|YP_005769281.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
gi|315585908|gb|ADU40289.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
Length = 250
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+D+ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQDQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|169829765|ref|YP_001699923.1| exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
gi|168994253|gb|ACA41793.1| Exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
Length = 251
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 149/258 (57%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RAC+ K +++ + D +Q+ +CQ +V +L Y +W
Sbjct: 1 MKFISWNVNGIRACLGK-GFLDFFHQIEADFFCIQETKCQAGQV----ELALDGYEQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK PL+VKYG+ +Q GR+IT +++ F + VY PN+ L
Sbjct: 56 YAQKKGYSGTAIFTKHTPLSVKYGVGDEDSQDEGRIITLEYEDFYLVNVYTPNAQRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ R+ W++H Y+Q +L S ++ GDLNV IDL N N+ +G+T EER F
Sbjct: 116 LPLRLTWEEHLASYLQ-DLNSKKPVVYCGDLNVAHTEIDLKNAKSNIGNSGFTYEERAKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL +G VD+FR+ +P+E +T+WS+ NK R N GWR+DY +VSEQL N I I
Sbjct: 175 SELLASGFVDSFRYKHPNETDHFTWWSYMNK-VRERNIGWRIDYFIVSEQLKNQINQATI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
+ GS HCP+ L+L +
Sbjct: 234 HPHIMGSDHCPIELQLHV 251
>gi|358068175|ref|ZP_09154645.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
gi|356693719|gb|EHI55390.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
Length = 252
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 154/258 (59%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNG+RAC++K ++ + DI +Q+ + E ++ L Y+ +W
Sbjct: 3 KMISWNVNGIRACIEK-GFLDVFKNMDADIFCIQESKVSEGQL----ELDLPGYYDYWNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV + TK+KP+ V YG+ G+ + GR+ITA+F+ + +T Y PNS +L
Sbjct: 58 AQKKGYSGVAMFTKDKPVKVTYGM-GIEEHDNEGRIITAEFENYYMLTCYTPNSQRQLTR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F DYI++ L +I GDLNV IDL NP N K AG+T EER+
Sbjct: 117 LEYRMDWEDAFLDYIKN-LSQKKPLIYCGDLNVAFADIDLKNPKTNRKNAGFTDEERQKM 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ +G D+FR+LYPD EG Y++WS+ AR N GWR+DY +VS+ L N IK I
Sbjct: 176 AVVQASGFTDSFRYLYPDLEGVYSWWSYMG-GARSKNIGWRIDYFMVSDSLKNCIKQARI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
+D+ GS HCPV L + +
Sbjct: 235 HTDIMGSDHCPVELEIDI 252
>gi|420469789|ref|ZP_14968500.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
gi|393086835|gb|EJB87505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
Length = 250
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N DI +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTKGF-MDFFNSVNADIFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTCLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420441204|ref|ZP_14940154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
gi|393054345|gb|EJB55274.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
Length = 250
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVNADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|300726843|ref|ZP_07060273.1| exodeoxyribonuclease III [Prevotella bryantii B14]
gi|299775956|gb|EFI72536.1| exodeoxyribonuclease III [Prevotella bryantii B14]
Length = 250
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 150/258 (58%), Gaps = 10/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRACV K E + D +Q+ + QE ++ F Y FW
Sbjct: 1 MKLISWNVNGLRACVTK-GFKETFKSFDADFFCIQETKMQEGQLDLQF----DGYESFWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+DK G G + K KPL V YGI N GRVIT ++ F +TVY PNS +LK
Sbjct: 56 YADKKGYSGTAIYAKTKPLNVTYGIDIDDHNHEGRVITLEYDNFFLVTVYTPNSQNELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RMIW++ F Y+ +L II+ GD+NV Q ID+ NP N K+AG+T EER
Sbjct: 116 LNYRMIWEKDFQTYLH-KLDKRKPIIVCGDMNVAHQEIDIKNPKTNHKSAGFTDEEREKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL G D FR YP E+ Y++WS+R + AR N GWR+DY LVS+++ + D I
Sbjct: 175 TQLLSNGFTDTFRFKYP-EQITYSWWSYRFR-AREKNAGWRIDYFLVSDRIKEKVLDAKI 232
Query: 310 RSDVQGSTHCPVVLRLSL 327
+D+ GS HCPV L + L
Sbjct: 233 HTDIMGSDHCPVELTIEL 250
>gi|226322793|ref|ZP_03798311.1| hypothetical protein COPCOM_00565 [Coprococcus comes ATCC 27758]
gi|225208774|gb|EEG91128.1| exodeoxyribonuclease III [Coprococcus comes ATCC 27758]
Length = 231
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/235 (43%), Positives = 145/235 (61%), Gaps = 10/235 (4%)
Query: 92 VEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGS-DKGQGGVGLLTKEKPLT 150
+++ E + DI LQ+ + QE ++ L YH +W + KG G + TK++PL+
Sbjct: 1 MDFFKEADADIFCLQETKMQEGQLV----LDLPEYHQYWNSAVKKGYSGTAIFTKKEPLS 56
Query: 151 VKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSEL 208
V YG+ G+ +Q GRVIT +F+ F FITVY PNS +L +D+RM W+ F Y++ +L
Sbjct: 57 VTYGL-GIEEHDQEGRVITLEFEDFYFITVYTPNSQSELARLDYRMTWEDAFLAYLK-KL 114
Query: 209 RSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDE 268
+I GDLNV + IDL NP N K AG+T EER F LLD G +D +R+ YPD+
Sbjct: 115 EETKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKFSALLDAGFIDTYRYFYPDK 174
Query: 269 EGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVL 323
EG Y++WS+R K AR N GWR+DY S+ L + ++D I ++V GS HCPV L
Sbjct: 175 EGIYSWWSYRFK-AREKNAGWRIDYFCTSKALESRLEDAKILTNVFGSDHCPVEL 228
>gi|421712646|ref|ZP_16151978.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
gi|407217447|gb|EKE87280.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
Length = 250
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F + Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEF----NGYFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+TG +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNTGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420397741|ref|ZP_14896957.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
gi|393011286|gb|EJB12474.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
Length = 250
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+D+ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQDQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420461013|ref|ZP_14959808.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
gi|393074587|gb|EJB75346.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
Length = 250
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVNADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|169823955|ref|YP_001691566.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|417925665|ref|ZP_12569084.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
gi|167830760|dbj|BAG07676.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|341591291|gb|EGS34499.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
Length = 253
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 158/259 (61%), Gaps = 9/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG RA +KK ++ N DI LQ+I+ +E+++ + ++ YH +
Sbjct: 1 MKLISWNVNGYRAVMKK-GFMDAFNSLNADIFCLQEIKMKENQMTDEM--NIEGYHRYSY 57
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G G + TK +P+ V YGI G+ + GRVIT +++ F + VY PNS KL+
Sbjct: 58 SANKAGYSGTLVYTKVEPIGVSYGI-GIDEHDTEGRVITCEYEDFFLVNVYTPNSKQKLE 116
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F++Y+ LR +I+ GDLNV IDL NP N ++AG+T EER
Sbjct: 117 RLDYRMVWEDEFHNYLNI-LRDRKPVIVCGDLNVAHNEIDLKNPQSNRRSAGFTDEERNK 175
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LL+ G +D FR+ YPD+ Y+YWS+ K AR N GWR+DY LVS+ L +N+ D
Sbjct: 176 MSLLLNDGYIDTFRYFYPDKTDEYSYWSYFAK-ARERNAGWRIDYFLVSDDLKDNLVDAK 234
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + GS HCPV L ++
Sbjct: 235 IHQSIMGSDHCPVELEINF 253
>gi|384895029|ref|YP_005769078.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
gi|308064283|gb|ADO06170.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
Length = 250
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + DI +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLVSWNVNGLRACMTK-GFMDFFNSVDADIFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VYVPNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFELFYLVNVYVPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSHPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420407902|ref|ZP_14907061.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
gi|393025387|gb|EJB26493.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
Length = 250
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVNADVFCIQESKMQQEQNIFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LNYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420456020|ref|ZP_14954844.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
gi|393071140|gb|EJB71927.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
Length = 250
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARNKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420462757|ref|ZP_14961538.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
gi|393078158|gb|EJB78902.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
Length = 250
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVNADVFCIQESKMQQEQNAFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|385219782|ref|YP_005781257.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
gi|317014940|gb|ADU82376.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMNWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNVGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420500328|ref|ZP_14998874.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
gi|393152095|gb|EJC52396.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420484933|ref|ZP_14983551.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|420515427|ref|ZP_15013890.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|420517129|ref|ZP_15015584.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
gi|393103068|gb|EJC03631.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|393123726|gb|EJC24194.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|393124943|gb|EJC25409.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + DI +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADIFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|421720757|ref|ZP_16160034.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
gi|407225541|gb|EKE95311.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVNADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|238922913|ref|YP_002936426.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
gi|238874585|gb|ACR74292.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
Length = 251
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 151/253 (59%), Gaps = 11/253 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRACV+K +++ + D +Q+ + Q ++ L YH +W
Sbjct: 1 MKFISWNVNGLRACVQK-GFLDFFNSIDADFFCIQESKLQAGQID----LDLPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + K +PL+V YGI G+ ++ GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKNEPLSVSYGI-GIEEHDKEGRVITLEYDNFYLVTCYTPNSQNELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F +Y+++ L + +++ GDLNV IDL NP N K AG++ EER
Sbjct: 115 RLPYRMQWEDDFREYLKT-LDAKKPVVLCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL +G D FR+ YPD EG Y++WS+R K AR N GWR+DY + S+++ + +K
Sbjct: 174 MTELLGSGFTDTFRYFYPDAEGIYSWWSYRFK-AREKNAGWRIDYFITSKRINDKLKKAA 232
Query: 309 IRSDVQGSTHCPV 321
I +DV GS HCPV
Sbjct: 233 IHTDVLGSDHCPV 245
>gi|430841915|ref|ZP_19459832.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1007]
gi|431741213|ref|ZP_19530119.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2039]
gi|430493733|gb|ELA70024.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1007]
gi|430601870|gb|ELB39452.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2039]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 148/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K+ L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q IDL N N K AG+T EER
Sbjct: 116 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAAL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ L + D I
Sbjct: 175 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLETRLADAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HTDIMGSDHCPVELDL 249
>gi|376316682|emb|CCG00067.1| exodeoxyribonuclease III [uncultured Flavobacteriia bacterium]
Length = 253
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 157/257 (61%), Gaps = 8/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ ++NVNG+RA +KK+ E + +PD++ +Q+ + Q+D+V E+ K ++ YH+F
Sbjct: 1 MKIVSFNVNGIRAIMKKDFH-ESLAMMDPDVLCIQETKAQDDQVAEAL-KPINGYHIFSN 58
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG G +LTKEKP++V Y I + GRVI A+F + +TVYVPNSG LK
Sbjct: 59 SAVKKGYSGTAILTKEKPISVSYDINIEEHDTEGRVICAEFSAYFVVTVYVPNSGSALKR 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEERRN 248
+ +R WD+ F Y+++ L +I+ GDLNV + IDLANP N K+AGY EE
Sbjct: 119 LTYRQTWDKAFLAYLKA-LEKKKPVIVCGDLNVAHRDIDLANPKPNYNKSAGYMQEEIDG 177
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
L G VD FRH PD + Y++WS+R AR+ N GWR+DY L+S L +K
Sbjct: 178 IDAYLSAGFVDTFRHFQPDTQ-KYSWWSYR-AGARVRNVGWRIDYFLISPDLLKKVKKAD 235
Query: 309 IRSDVQGSTHCPVVLRL 325
I ++V GS HCPV L L
Sbjct: 236 IYNEVMGSDHCPVALEL 252
>gi|420410840|ref|ZP_14909976.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
gi|393026053|gb|EJB27153.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420451071|ref|ZP_14949925.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
gi|393065003|gb|EJB65833.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVNADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKT-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|402312986|ref|ZP_10831909.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
gi|400367562|gb|EJP20578.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
Length = 258
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 153/258 (59%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRA V K +++ + + DI +Q+ + E ++ L Y+ +W
Sbjct: 9 KMISWNVNGLRAAVTK-GFLDFFRDIDADIFCIQESKLSEGQI----ELDLPGYYDYWNY 63
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV + TK+KPL V YGI G+ + GRVITA+++ F IT Y PNS L
Sbjct: 64 AQKKGYSGVAVFTKDKPLNVTYGI-GIEEHDNEGRVITAEYEDFYLITCYTPNSQRGLTR 122
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F YI +L +I GDLNV + IDL NP N K AG+T EER
Sbjct: 123 LDYRMTWEDAFLSYIL-KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKM 181
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L +G D+FR LYPD+ AY++WS+ AR N GWR+DY +VS++L + IK+ I
Sbjct: 182 DVILTSGFCDSFRVLYPDKTDAYSWWSYMG-GARAKNVGWRIDYFIVSDKLKDRIKEAKI 240
Query: 310 RSDVQGSTHCPVVLRLSL 327
SD+ GS HCPV L + +
Sbjct: 241 HSDILGSDHCPVELDIEI 258
>gi|325854960|ref|ZP_08171676.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
gi|325483938|gb|EGC86878.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
Length = 249
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 156/257 (60%), Gaps = 12/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRACV K+ ++ N D LQ+ + Q ++ SF Y +W
Sbjct: 1 MKLISWNVNGLRACVGKDFEQQF-KALNADFFCLQETKMQAGQLDISF----PGYASYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G G + TK KPL V YGI G+ + GRVIT + F +TVY PNS L+
Sbjct: 56 YADKKGYSGTAIFTKHKPLDVTYGI-GMDEHDHEGRVITLEMDDFYLVTVYTPNSQDGLR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W++ F DY+ L +++ GD+NV + ID+ NP N + AG+T EER
Sbjct: 115 RLDYRMKWEKDFQDYLH-RLDRKKPVVVCGDMNVAHEEIDIKNPKTNRRNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LLD+G +D FR LYP E+ Y++WS+R + AR N GWR+DY L+SE+L + ++D
Sbjct: 174 MTQLLDSGFIDTFRTLYP-EQVTYSWWSYRFR-ARERNTGWRIDYFLISERLRDRLEDAK 231
Query: 309 IRSDVQGSTHCPVVLRL 325
I +++ GS HCPV + L
Sbjct: 232 IHTEIMGSDHCPVEVDL 248
>gi|404483949|ref|ZP_11019164.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
gi|404342961|gb|EJZ69330.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
Length = 276
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 153/258 (59%), Gaps = 11/258 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-I 131
K+ +WNVNGLRA V K +++ + + DI +Q+ + E ++ L Y+ +W
Sbjct: 27 KMISWNVNGLRAAVTK-GFLDFFRDIDADIFCIQESKLSEGQI----ELDLPGYYDYWNY 81
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV + TK+KPL V YGI G+ + GRVITA+++ F IT Y PNS L
Sbjct: 82 AQKKGYSGVAVFTKDKPLNVTYGI-GIEEHDNEGRVITAEYEDFYLITCYTPNSQRGLTR 140
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F YI +L +I GDLNV + IDL NP N K AG+T EER
Sbjct: 141 LDYRMTWEDAFLSYIL-KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKM 199
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L +G D+FR LYPD+ AY++WS+ AR N GWR+DY +VS++L + IK+ I
Sbjct: 200 DVILTSGFCDSFRVLYPDKTDAYSWWSYMG-GARAKNVGWRIDYFIVSDKLKDRIKEAKI 258
Query: 310 RSDVQGSTHCPVVLRLSL 327
SD+ GS HCPV L + +
Sbjct: 259 HSDILGSDHCPVELDIEI 276
>gi|282877708|ref|ZP_06286523.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
gi|281300280|gb|EFA92634.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
Length = 249
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 72 VKVSTWNVNGLRACVKKN--ACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMF 129
+K +WNVNGLRACVKK+ A ++ + D LQ+ + Q ++ F Y +
Sbjct: 1 MKFISWNVNGLRACVKKDFEASFHHL---DADFFCLQETKMQAGQLDLQFEG----YQSY 53
Query: 130 WIGSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIK 186
W +DK G G + TK PL V YG+ G+ + GRVIT + F ITVYVPNS +
Sbjct: 54 WNYADKKGYSGTAIYTKHTPLNVTYGL-GIDEHDHEGRVITMEMDDFFLITVYVPNSQDE 112
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
L+ +D+RM W+ F Y+ +L + +II GDLNV + IDL NP N + AG+T EER
Sbjct: 113 LRRLDYRMQWEDDFRAYVM-QLDAIKPVIICGDLNVAHEEIDLKNPKTNRRNAGFTDEER 171
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
LL+ G VD FRHLYP E+ Y++WS+R + AR N GWR+DY L+SE+L + D
Sbjct: 172 EKMTILLNNGFVDTFRHLYP-EQVTYSWWSYRFR-AREKNAGWRIDYFLISERLKERLVD 229
Query: 307 CIIRSDVQGSTHCPVVLRL 325
I +++ GS HCPV L L
Sbjct: 230 AKIHTEILGSDHCPVELEL 248
>gi|293571415|ref|ZP_06682444.1| exodeoxyribonuclease III [Enterococcus faecium E980]
gi|430819435|ref|ZP_19438090.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0045]
gi|431736951|ref|ZP_19525908.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1972]
gi|291608506|gb|EFF37799.1| exodeoxyribonuclease III [Enterococcus faecium E980]
gi|430440618|gb|ELA50858.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0045]
gi|430599606|gb|ELB37304.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1972]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 149/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K+ L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q+IDL N N K AG+T EER
Sbjct: 116 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAAL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ L + D I
Sbjct: 175 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLEPRLADAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HTDIMGSDHCPVELDL 249
>gi|325679379|ref|ZP_08158964.1| exodeoxyribonuclease III [Ruminococcus albus 8]
gi|324108976|gb|EGC03207.1| exodeoxyribonuclease III [Ruminococcus albus 8]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 149/259 (57%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNG RAC++K ++ + DI +Q+ + Q D+ PE + K
Sbjct: 1 MKLISWNVNGFRACLQKGF-EDFFKSADADIFCIQETKMQPDQADFSPEGYHK------Y 53
Query: 129 FWIGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
F KG G + TK +P V YG+ G GRVIT ++ F F+ YVPN+ +LK
Sbjct: 54 FHSAVKKGYSGTAVYTKNEPKAVTYGLNGAHTDEGRVITCEYDDFYFVCCYVPNAQNELK 113
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
ID+RM ++ Y+ L +I GDLNV + IDL NP NV AG++ +ER
Sbjct: 114 RIDYRMEFEDDMRAYLCG-LDKLKPVIYCGDLNVAHEEIDLKNPKSNVGNAGFSDQERGK 172
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL G D FR LYP+ G Y++WS+R +AR NN GWR+DY +VSE+L + + D
Sbjct: 173 FTELLAAGFADTFRRLYPETTGVYSWWSYR-FNARKNNAGWRIDYFVVSERLMDKVGDSK 231
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +DV GS HCPV L +++
Sbjct: 232 ILTDVMGSDHCPVQLDITI 250
>gi|420433080|ref|ZP_14932089.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|420508405|ref|ZP_15006911.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|420510180|ref|ZP_15008676.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|420532271|ref|ZP_15030634.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|420535643|ref|ZP_15033985.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|420537346|ref|ZP_15035676.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|420540833|ref|ZP_15039141.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|420543901|ref|ZP_15042190.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
gi|393051948|gb|EJB52898.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|393115197|gb|EJC15708.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|393116707|gb|EJC17212.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|393139902|gb|EJC40275.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|393143291|gb|EJC43635.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|393144901|gb|EJC45232.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|393147453|gb|EJC47777.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|393158898|gb|EJC59154.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVNADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|385216679|ref|YP_005776636.1| exodeoxyribonuclease [Helicobacter pylori F32]
gi|317181208|dbj|BAJ58994.1| exodeoxyribonuclease [Helicobacter pylori F32]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|313897464|ref|ZP_07831007.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
gi|312957834|gb|EFR39459.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
Length = 254
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/260 (39%), Positives = 156/260 (60%), Gaps = 17/260 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQ----EDEVPESFRKSLSHYH 127
+++ +WNVNG+RAC++K +++ E + D+ +Q+ + Q E E P +Y
Sbjct: 1 MRLVSWNVNGIRACMQK-GFMDFFKEIDADVFCIQETKMQPGQLEIETP-------GYYQ 52
Query: 128 MFWIGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
KG G + +K+KPL+V YG+ G+ + GRVIT +++ F + VY PNS
Sbjct: 53 YMNSAEKKGYSGTMVFSKQKPLSVTYGL-GIEEHDHEGRVITCEYEDFYLVCVYTPNSKD 111
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +D+RM+W+ F Y+ +L ++++ GDLNV + IDL NP N + AG+T EE
Sbjct: 112 GLLRLDYRMVWEDAFRAYLH-KLNETKSVLVCGDLNVAHKEIDLKNPKTNRRNAGFTDEE 170
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R LL++G +D+FR+LYP +EG Y++WS+R K AR N GWR+DY LVSE I+
Sbjct: 171 RGKMSVLLESGFIDSFRYLYPKQEGIYSWWSYRFK-AREKNAGWRIDYFLVSEDAKEAIR 229
Query: 306 DCIIRSDVQGSTHCPVVLRL 325
+ I +D+ GS HCPV L
Sbjct: 230 EARIHTDIYGSDHCPVSLEF 249
>gi|217034282|ref|ZP_03439699.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
gi|216943254|gb|EEC22719.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|429741842|ref|ZP_19275492.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
gi|429158090|gb|EKY00657.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 150/257 (58%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA K E I + D + LQ+ + Q ++ L YH +W
Sbjct: 1 MKFISWNVNGLRAVFGK-GFPEIIQGLDADFVCLQETKMQAGQL----EADLPSYHTYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + T+ +PL+V YGI G+ + GRVIT ++ F +TVYVPNS L+
Sbjct: 56 YAEKKGYSGTAIYTRHEPLSVSYGI-GIDHHDTEGRVITLEYTDFYLVTVYVPNSQDDLR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ EL +I+ GDLNV Q IDL NP N + AG+T EER
Sbjct: 115 RLGYRMTWEDDFRAYL-VELDKKKPVIVCGDLNVAHQEIDLKNPKSNRRNAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F+ELLD G +D FR+ +PD+ Y++WS+R K AR N GWR+DY + S++LA +
Sbjct: 174 FQELLDAGFIDTFRYFHPDQRDIYSWWSYRFK-ARERNSGWRIDYFVTSQRLAPQLASAK 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +++ GS HCPV L L
Sbjct: 233 IHTEIFGSDHCPVELVL 249
>gi|384890060|ref|YP_005764362.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
gi|297380626|gb|ADI35513.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + DI +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADIFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VYVPNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFELFYLVNVYVPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|108563814|ref|YP_628130.1| exodeoxyribonuclease III [Helicobacter pylori HPAG1]
gi|107837587|gb|ABF85456.1| exodeoxyribonuclease [Helicobacter pylori HPAG1]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ FR Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFRG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|386748979|ref|YP_006222186.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
gi|384555222|gb|AFI03556.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 150/258 (58%), Gaps = 11/258 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + DI +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMNK-GFMDFFTSVDADIFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG GV +K KPL V YGI G+ + GRVIT +F +F + VY PNS L
Sbjct: 56 CALKKGYSGVVTFSKTKPLNVSYGI-GIEEHDTEGRVITCEFDKFYLVNVYTPNSQRALA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER
Sbjct: 115 RLEYRMSWEIEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKANRKNAGFSDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G +D FRH YP +E AYT+WS+ +S R N GWR+DY L S L IKD
Sbjct: 174 FSELLNAGFIDTFRHFYPTKEKAYTWWSYMQQS-RERNIGWRIDYFLCSNSLKIEIKDAK 232
Query: 309 IRSDVQGSTHCPVVLRLS 326
I + GS HCPV L L+
Sbjct: 233 IYESILGSDHCPVGLELN 250
>gi|335998084|ref|ZP_08563996.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
gi|335348598|gb|EGM50099.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
Length = 254
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 152/253 (60%), Gaps = 9/253 (3%)
Query: 76 TWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSD 134
+WNVNGLRA +KKN E + + D +Q+ + QE +V L YH +W
Sbjct: 5 SWNVNGLRAVLKKNFS-EVFEKLDADFFCIQETKLQEGQV----ELDLPGYHQYWNYAER 59
Query: 135 KGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFR 193
KG G + TK +P +V YGI + GRVIT ++ F + Y PNS KLK +DFR
Sbjct: 60 KGYSGTAIFTKHEPQSVSYGIKNSEFDHEGRVITLEYASFYLVCCYSPNSQPKLKRLDFR 119
Query: 194 MIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELL 253
M ++ F +Y+ ++L+ +I+ GDLNV + IDL NP N + AG++ EER LL
Sbjct: 120 MGFEDAFLNYL-NDLKEKKPVIMCGDLNVAHEEIDLKNPKTNHRNAGFSNEERSCMTRLL 178
Query: 254 DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDV 313
+ G +D FR +PDE G Y++WS+R +AR NN GWR+DY +VSE L +++++ I +D+
Sbjct: 179 ENGYLDTFRFFHPDETGIYSWWSYR-FNARKNNAGWRIDYFIVSESLKDSLENAEILTDI 237
Query: 314 QGSTHCPVVLRLS 326
GS HCPV+L +
Sbjct: 238 MGSDHCPVLLETA 250
>gi|325299788|ref|YP_004259705.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
gi|324319341|gb|ADY37232.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
Length = 251
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 150/252 (59%), Gaps = 9/252 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC K + N D LQ+ + Q ++ +F S+++
Sbjct: 1 MKLISWNVNGLRACCDK-GFRDAFTRLNADFFCLQETKMQAGQLDLAFDGYTSYWNY--- 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+ +PL V YG+ G+ ++ GRVIT + + F +TVY PNS LK
Sbjct: 57 AEKKGYSGTAIFTRHQPLNVSYGM-GIDEHDREGRVITLEMENFYLVTVYTPNSQDGLKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y+ EL + +++ GDLNV + IDL NP N AG+T +ER F
Sbjct: 116 LDYRMTWEDAFRRYLL-ELDAKKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ LLD G +D FR+ YP++EG Y++WS+R + AR N GWR+DY L S +LA ++ I
Sbjct: 175 QTLLDAGFIDTFRYFYPEQEGIYSWWSYRFR-AREKNAGWRIDYFLASARLAGKLESAAI 233
Query: 310 RSDVQGSTHCPV 321
+++ GS HCPV
Sbjct: 234 HTEIFGSDHCPV 245
>gi|148544535|ref|YP_001271905.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|184153898|ref|YP_001842239.1| exodeoxyribonuclease III [Lactobacillus reuteri JCM 1112]
gi|227363037|ref|ZP_03847174.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|325682856|ref|ZP_08162372.1| exodeoxyribonuclease III [Lactobacillus reuteri MM4-1A]
gi|148531569|gb|ABQ83568.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|183225242|dbj|BAG25759.1| exodeoxyribonuclease III [Lactobacillus reuteri JCM 1112]
gi|227071921|gb|EEI10207.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|324977206|gb|EGC14157.1| exodeoxyribonuclease III [Lactobacillus reuteri MM4-1A]
Length = 253
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 158/254 (62%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +W+VNGL++ + + VE ++ D LQ+ R + E P + +Y+ +W
Sbjct: 1 MKFISWSVNGLKSAIN-HGFVEDFKRQDADFFCLQRTRLDKGEEP----IQIPNYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KP V YG+ + ++ GR+IT ++ F I VYVP SG KL+
Sbjct: 56 YAEKKGYSGTAIFTKYKPENVIYGMNNSIFDKEGRLITLEYPNFYLIDVYVPVSGEKLQH 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ WD+ F DY+ + L+S+ +II GD+++ Q IDLA P +N AG+T +ER +F
Sbjct: 116 LDYRLDWDRAFLDYVIN-LQSSKPVIIGGDMSIAYQPIDLAEPTENHHKAGFTKQERADF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL+ GL D FR+L+P+ GAYT+WS+R AR N GWRLDY LVS+ I++ I
Sbjct: 175 GKLLNAGLTDTFRYLHPNLHGAYTWWSYR-YDARERNVGWRLDYFLVSDVWKERIEEAKI 233
Query: 310 RSDVQGSTHCPVVL 323
SDV+GS+HCP+ L
Sbjct: 234 LSDVKGSSHCPIEL 247
>gi|332654136|ref|ZP_08419880.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
gi|332517222|gb|EGJ46827.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
Length = 252
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 154/258 (59%), Gaps = 8/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC+KK +++ E+ PD LQ+ + ++ + +++ Y W
Sbjct: 1 MKLISWNVNGLRACLKKGF-LDFYQEQKPDFCCLQETKMEQGQADVDLGENMLEY---WN 56
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
++K G G + T +PL V+YG+ + GR+IT ++++F + Y PNS +LK
Sbjct: 57 SAEKKGYSGTAVFTPHQPLAVRYGMGKEEHDHEGRLITLEYEKFYLVCCYTPNSQSELKR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ Y+ EL +I GDLNV + IDL NP N AG+T +ER
Sbjct: 117 LDYRMEWEDDLRAYLM-ELDKVKPVIYCGDLNVAHREIDLKNPKTNRMNAGFTDQEREKM 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL +G D FR LYPD EG Y++WS+R + AR N GWR+DY +VS++L N IK I
Sbjct: 176 TTLLSSGFTDTFRFLYPDLEGVYSWWSYRFQ-ARKKNAGWRIDYFIVSDRLQNAIKRAEI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
+ V+GS HCPV+L L +
Sbjct: 235 LTQVEGSDHCPVLLELDI 252
>gi|149033629|gb|EDL88427.1| apurinic/apyrimidinic endonuclease 1, isoform CRA_b [Rattus
norvegicus]
Length = 294
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 170/303 (56%), Gaps = 28/303 (9%)
Query: 28 RKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVK 87
+ + + K+S +K++ E + D ++ S + +K+ +WNV+GLRA +K
Sbjct: 17 KSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSASGKSATLKICSWNVDGLRAWIK 76
Query: 88 KNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTK 145
K ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL++
Sbjct: 77 KKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEGYSGVGLLSR 135
Query: 146 EKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQ 205
+ PL V YGI YVPN+G L +++R WD+ F +++
Sbjct: 136 QCPLKVSYGI----------------------AYVPNAGRGLVRLEYRQRWDEAFRKFLK 173
Query: 206 SELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRHL 264
+L S +++ GDLNV + IDL NP N K AG+T +ER+ F E+L L D+FRHL
Sbjct: 174 -DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGEMLQAVPLADSFRHL 232
Query: 265 YPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLR 324
YP+ AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP+ L
Sbjct: 233 YPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLY 291
Query: 325 LSL 327
L+L
Sbjct: 292 LAL 294
>gi|421720502|ref|ZP_16159782.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
gi|407219094|gb|EKE88911.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
Length = 250
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LNYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420484801|ref|ZP_14983422.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|420515183|ref|ZP_15013650.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
gi|393098636|gb|EJB99222.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|393155626|gb|EJC55898.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
Length = 250
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L ++KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTHLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420414387|ref|ZP_14913507.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
gi|393026721|gb|EJB27818.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
Length = 250
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S+ L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSDPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420459312|ref|ZP_14958114.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
gi|393072002|gb|EJB72782.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
Length = 250
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVNADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
++ GS HCPV L L
Sbjct: 234 YKNILGSDHCPVGLEL 249
>gi|420499520|ref|ZP_14998076.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
gi|393151722|gb|EJC52025.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
Length = 250
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 151/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVNADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLNVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420481469|ref|ZP_14980108.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|420510358|ref|ZP_15008848.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
gi|393094477|gb|EJB95086.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|393122099|gb|EJC22576.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
Length = 250
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVNADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMNWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|323340218|ref|ZP_08080482.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|417972789|ref|ZP_12613677.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|323092409|gb|EFZ35017.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|346330854|gb|EGX99085.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
Length = 254
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 152/253 (60%), Gaps = 9/253 (3%)
Query: 76 TWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSD 134
+WNVNGLRA +KKN E + + D +Q+ + QE +V L YH +W
Sbjct: 5 SWNVNGLRAVLKKNFS-EVFEKLDADFFCIQETKLQEGQV----ELDLPGYHQYWNYAER 59
Query: 135 KGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFR 193
KG G + TK +P +V YGI + GRVIT ++ F + Y PNS KLK +DFR
Sbjct: 60 KGYSGTAIFTKHEPQSVSYGIHNSEFDHEGRVITLEYASFYLVCCYSPNSQPKLKRLDFR 119
Query: 194 MIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELL 253
M ++ F +Y+ ++L+ +I+ GDLNV + IDL NP N + AG++ EER LL
Sbjct: 120 MGFEDAFLNYL-NDLKEKKPVIMCGDLNVAHEEIDLKNPKTNHRNAGFSNEERSCMTRLL 178
Query: 254 DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDV 313
+ G +D FR +PDE G Y++WS+R +AR NN GWR+DY +VSE L +++++ I +D+
Sbjct: 179 ENGYLDTFRFFHPDETGIYSWWSYR-FNARKNNAGWRIDYFIVSESLKDSLENAEILTDI 237
Query: 314 QGSTHCPVVLRLS 326
GS HCPV+L +
Sbjct: 238 MGSDHCPVLLETA 250
>gi|383750553|ref|YP_005425656.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
gi|380875299|gb|AFF21080.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
Length = 250
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420467774|ref|ZP_14966523.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
gi|393083034|gb|EJB83748.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
Length = 250
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|309775417|ref|ZP_07670420.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308916806|gb|EFP62543.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 254
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 157/257 (61%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNG+RAC++K +++ E + DI +Q+ + Q P YH +
Sbjct: 1 MRLVSWNVNGIRACMQK-GFMDFFNEIDADIFCIQETKMQ----PGQLEIETPLYHQYMN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G G + +K++P+ V YG+ G+ + GRVIT +++ F + VY PNS L
Sbjct: 56 SAEKKGYSGTMVFSKQEPIHVSYGL-GIEEHDHEGRVITCEYEDFYLVCVYTPNSKDGLL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+ +L ++++ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMEWEDAFRTYLH-KLNETKSVLVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERNK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LLD+G +D++R+LYP++EG Y++WS+R K AR N GWR+DY LVSE + I++
Sbjct: 174 MSVLLDSGFIDSYRYLYPEQEGVYSWWSYRFK-AREKNAGWRIDYFLVSEDAKDGIREAK 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +D+ GS HCPV L
Sbjct: 233 IHTDIYGSDHCPVSLEF 249
>gi|384891873|ref|YP_005766006.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|385224548|ref|YP_005784474.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
gi|385232401|ref|YP_005792320.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|307638182|gb|ADN80632.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|325996778|gb|ADZ52183.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|325998370|gb|ADZ50578.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
Length = 250
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFK----GYFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F +++ L +I+ GDLNV IDL NP N K AG++ EER+ F
Sbjct: 116 LSYRMSWEMEFKKFLKV-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERKKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|357050363|ref|ZP_09111563.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
gi|355381448|gb|EHG28572.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
Length = 250
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 150/258 (58%), Gaps = 11/258 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN +E + D LQ+ + Q ++ L Y +W
Sbjct: 1 MKFISWNVNGLRAIVKKN-FLEAFETFDADFFCLQETKLQAGQI----ELDLPGYTQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE L YGI G+ + GRVIT ++ F +T Y PN+ +L+
Sbjct: 56 YAEKKGYSGTAIFAKEPALAAHYGI-GIEEHDAEGRVITLEYPEFFLVTCYTPNAQNELR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+ ++L+ +I+ GDLNV Q+IDL N N K AG+T EER
Sbjct: 115 RLDYRMTWEDAFRAYL-TDLKQQKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL G D FR+ YPD EG Y++WS+R +AR NN GWR+DY +VS+ L + + D
Sbjct: 174 FSTLLSAGFTDTFRYFYPDAEGIYSWWSYR-FNARKNNAGWRIDYFVVSDDLNDRLVDAK 232
Query: 309 IRSDVQGSTHCPVVLRLS 326
I +++ GS HCPV L+L+
Sbjct: 233 IHTEILGSDHCPVELQLN 250
>gi|385249934|ref|YP_005778153.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|420402627|ref|ZP_14901815.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
gi|317182729|dbj|BAJ60513.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|393016094|gb|EJB17254.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
Length = 250
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L ++KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTHLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|291523803|emb|CBK89390.1| exodeoxyribonuclease III [Eubacterium rectale DSM 17629]
Length = 251
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 151/253 (59%), Gaps = 11/253 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRACV+K +++ + D +Q+ + Q ++ L YH +W
Sbjct: 1 MKFISWNVNGLRACVQK-GFLDFFNSIDVDFFCIQESKLQAGQID----LDLPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + K +PL+V YGI G+ ++ GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKNEPLSVSYGI-GIEEHDKEGRVITLEYDNFYLVTCYTPNSQNELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F +Y+++ L + +++ GDLNV IDL NP N K AG++ EER
Sbjct: 115 RLPYRMQWEDDFREYLKA-LDAQKPVVLCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL +G D FR+ YPD EG Y++WS+R K AR N GWR+DY + S+++ + +K
Sbjct: 174 MTELLGSGFTDTFRYFYPDAEGIYSWWSYRFK-AREKNAGWRIDYFITSKRINDKLKKAA 232
Query: 309 IRSDVQGSTHCPV 321
I +DV GS HCPV
Sbjct: 233 IHTDVLGSDHCPV 245
>gi|293400493|ref|ZP_06644638.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305519|gb|EFE46763.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 253
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 156/259 (60%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RAC+ K +++ E + DI +Q+ + Q P + Y+ +
Sbjct: 3 MKMVSWNVNGIRACMTK-GFMDFFQEIDADIFCIQETKMQ----PGQLDIATPGYYQYIN 57
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G G + TKEKP+ V Y + G+ + GRVIT +++ F + VY PNS L
Sbjct: 58 SADKKGYSGTMVFTKEKPIAVTYDL-GIDEHDHEGRVITCEYENFYLVCVYTPNSKDGLL 116
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+ + L+ ++I+ GDLNV + IDL NP N + AG+T EER
Sbjct: 117 RLDYRMQWEDDFRAYLNA-LKEKKSVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERAK 175
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
L +G +D+FR+LYP++EG Y++WS+R K AR N GWR+DY LVSE + I++
Sbjct: 176 MTTLQQSGFIDSFRYLYPEQEGIYSWWSYRFK-AREKNAGWRIDYFLVSEDAKDKIQEAS 234
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +DV GS HCPV L +
Sbjct: 235 IHTDVFGSDHCPVSLDIDF 253
>gi|430834375|ref|ZP_19452382.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0679]
gi|430485606|gb|ELA62512.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0679]
Length = 250
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 148/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K+ L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAERKGYSGTAIFAKKPALNATYGLGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q IDL N N K AG+T EER
Sbjct: 116 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAAL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ L + D I
Sbjct: 175 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLEPRLADAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HTDIMGSDHCPVELDL 249
>gi|308070428|ref|YP_003872033.1| exodeoxyribonuclease [Paenibacillus polymyxa E681]
gi|305859707|gb|ADM71495.1| Exodeoxyribonuclease [Paenibacillus polymyxa E681]
Length = 254
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K Y+ E N DI +Q+ + QE ++ +++ Y +W
Sbjct: 1 MKLISWNVNGLRACVTK-GFYTYLKETNADIFCVQETKLQEGQI---LMENMEEYTQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + TK KPL+V YG+ GR IT +F+ F + VY PN+ L +
Sbjct: 57 YAEKKGYSGTAIFTKIKPLSVHYGLEENEEPEGRTITLEFENFYLVNVYTPNTKRDLSRL 116
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+R+ W+ F Y+Q +L + +I+ GDLNV Q IDL N N AG+T EER
Sbjct: 117 PYRLEWEDRFRSYLQ-QLDALKPVIVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMS 175
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
LLD G +D FR YPD Y++WS+ K R N GWR+DY LVSE+L + D I
Sbjct: 176 LLLDAGFIDTFRTFYPDRTDVYSWWSYMPK-VRERNIGWRIDYFLVSERLRPLLMDASID 234
Query: 311 SDVQGSTHCPVVLRL 325
+ GS HCPV+L L
Sbjct: 235 CHITGSDHCPVILDL 249
>gi|207091978|ref|ZP_03239765.1| exodeoxyribonuclease [Helicobacter pylori HPKX_438_AG0C1]
Length = 250
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
I +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 ISYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKERAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|12247526|gb|AAG49922.1|AF311054_1 APEX [Rattus norvegicus]
Length = 289
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 170/303 (56%), Gaps = 28/303 (9%)
Query: 28 RKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVK 87
+ + + K+S +K++ E + D ++ S + +K+ +WNV+GLRA +K
Sbjct: 12 KSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSASGKSATLKICSWNVDGLRAWIK 71
Query: 88 KNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTK 145
K ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL++
Sbjct: 72 KKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEGYSGVGLLSR 130
Query: 146 EKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQ 205
+ PL V YGI YVPN+G L +++R WD+ F +++
Sbjct: 131 QCPLKVSYGI----------------------AYVPNAGRGLVRLEYRQRWDEAFRKFLK 168
Query: 206 SELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRHL 264
+L S +++ GDLNV + IDL NP N K AG+T +ER+ F E+L L D+FRHL
Sbjct: 169 -DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGEMLQAVPLADSFRHL 227
Query: 265 YPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLR 324
YP+ AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP+ L
Sbjct: 228 YPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLY 286
Query: 325 LSL 327
L+L
Sbjct: 287 LAL 289
>gi|425790062|ref|YP_007017982.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
gi|425628377|gb|AFX91845.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
Length = 250
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGI-PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VYVPNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINVEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|386756397|ref|YP_006229614.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
gi|384562655|gb|AFI03121.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
Length = 250
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEMEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420401021|ref|ZP_14900220.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
gi|393016629|gb|EJB17788.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
Length = 250
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VYVPNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSHPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|432328166|ref|YP_007246310.1| exodeoxyribonuclease III [Aciduliprofundum sp. MAR08-339]
gi|432134875|gb|AGB04144.1| exodeoxyribonuclease III [Aciduliprofundum sp. MAR08-339]
Length = 257
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 161/260 (61%), Gaps = 5/260 (1%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ ++ + +WNVNG+RA V+ N ++++ + NPDI+ALQ+I+ +ED++P R +
Sbjct: 2 SMELLLMSWNVNGIRAAVR-NGFLKFLEKYNPDILALQEIKAREDDIPLEVRYYEGYRKF 60
Query: 129 FWIGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKL 187
F KG G L TK +P +V +GI + GRVITA+++RF + Y PNS L
Sbjct: 61 FNPARRKGYAGTALFTKIEPESVSFGIGDERFDSEGRVITAEYERFYLVNAYFPNSQHGL 120
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+DF++ +D+ + Y+ +ELR + +++ GD NV + IDLANP +N K AG+T EER
Sbjct: 121 TRLDFKIEFDRKIHAYL-NELRRSKPVVLCGDFNVAHKEIDLANPKQNEKNAGFTPEERA 179
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
E L+ G VD FR ++ E G YT+W++R +AR N GWR+DY +VS+ L ++K
Sbjct: 180 WMDEFLNDGYVDTFR-MFTKEGGHYTWWTYR-FNARARNIGWRVDYFVVSKDLVPHVKKS 237
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
I SDV GS H P+ + L +
Sbjct: 238 WIMSDVYGSDHAPIAMILEI 257
>gi|257881925|ref|ZP_05661578.1| AP endonuclease [Enterococcus faecium 1,231,502]
gi|257890085|ref|ZP_05669738.1| AP endonuclease [Enterococcus faecium 1,231,410]
gi|260558703|ref|ZP_05830892.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium C68]
gi|293563951|ref|ZP_06678361.1| exodeoxyribonuclease III [Enterococcus faecium E1162]
gi|294617705|ref|ZP_06697329.1| exodeoxyribonuclease III [Enterococcus faecium E1679]
gi|294623736|ref|ZP_06702567.1| exodeoxyribonuclease III [Enterococcus faecium U0317]
gi|383327975|ref|YP_005353859.1| exodeoxyribonuclease III [Enterococcus faecium Aus0004]
gi|415888406|ref|ZP_11549116.1| exodeoxyribonuclease III [Enterococcus faecium E4453]
gi|427396653|ref|ZP_18889412.1| exodeoxyribonuclease III (xth) [Enterococcus durans FB129-CNAB-4]
gi|430831423|ref|ZP_19449474.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0333]
gi|430846773|ref|ZP_19464627.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1133]
gi|430856040|ref|ZP_19473744.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1392]
gi|431535444|ref|ZP_19517290.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1731]
gi|431638743|ref|ZP_19523370.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1904]
gi|431747991|ref|ZP_19536755.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2297]
gi|431753983|ref|ZP_19542648.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2883]
gi|431769960|ref|ZP_19558364.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1644]
gi|431774095|ref|ZP_19562408.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2369]
gi|431776933|ref|ZP_19565190.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2560]
gi|431781241|ref|ZP_19569389.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E6012]
gi|431784869|ref|ZP_19572905.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E6045]
gi|257817583|gb|EEV44911.1| AP endonuclease [Enterococcus faecium 1,231,502]
gi|257826445|gb|EEV53071.1| AP endonuclease [Enterococcus faecium 1,231,410]
gi|260075162|gb|EEW63475.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium C68]
gi|291596042|gb|EFF27311.1| exodeoxyribonuclease III [Enterococcus faecium E1679]
gi|291596861|gb|EFF28081.1| exodeoxyribonuclease III [Enterococcus faecium U0317]
gi|291604080|gb|EFF33604.1| exodeoxyribonuclease III [Enterococcus faecium E1162]
gi|364094896|gb|EHM37011.1| exodeoxyribonuclease III [Enterococcus faecium E4453]
gi|378937669|gb|AFC62741.1| exodeoxyribonuclease III [Enterococcus faecium Aus0004]
gi|425723323|gb|EKU86214.1| exodeoxyribonuclease III (xth) [Enterococcus durans FB129-CNAB-4]
gi|430481306|gb|ELA58462.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0333]
gi|430538327|gb|ELA78619.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1133]
gi|430545329|gb|ELA85303.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1392]
gi|430595015|gb|ELB32963.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1731]
gi|430602222|gb|ELB39801.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1904]
gi|430614867|gb|ELB51838.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2297]
gi|430619906|gb|ELB56709.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2883]
gi|430634646|gb|ELB70761.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2369]
gi|430636029|gb|ELB72104.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1644]
gi|430639874|gb|ELB75728.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2560]
gi|430648707|gb|ELB84107.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E6045]
gi|430649602|gb|ELB84970.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E6012]
Length = 250
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 148/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K+ L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q IDL N N K AG+T EER
Sbjct: 116 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAAL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ L + D I
Sbjct: 175 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLEPGLADAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HTDIMGSDHCPVELDL 249
>gi|385226164|ref|YP_005786089.1| exodeoxyribonuclease III [Helicobacter pylori 83]
gi|332674310|gb|AEE71127.1| exodeoxyribonuclease III [Helicobacter pylori 83]
Length = 250
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+D+ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQDQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GR++T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRMVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|444374829|ref|ZP_21174132.1| exodeoxyribonuclease III [Helicobacter pylori A45]
gi|443620688|gb|ELT81131.1| exodeoxyribonuclease III [Helicobacter pylori A45]
Length = 250
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVNADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|69245045|ref|ZP_00603203.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium DO]
gi|314939354|ref|ZP_07846596.1| exodeoxyribonuclease III [Enterococcus faecium TX0133a04]
gi|314944126|ref|ZP_07850782.1| exodeoxyribonuclease III [Enterococcus faecium TX0133C]
gi|314949042|ref|ZP_07852404.1| exodeoxyribonuclease III [Enterococcus faecium TX0082]
gi|314953542|ref|ZP_07856453.1| exodeoxyribonuclease III [Enterococcus faecium TX0133A]
gi|314994499|ref|ZP_07859775.1| exodeoxyribonuclease III [Enterococcus faecium TX0133B]
gi|314998115|ref|ZP_07863002.1| exodeoxyribonuclease III [Enterococcus faecium TX0133a01]
gi|389867864|ref|YP_006375287.1| exodeoxyribonuclease III [Enterococcus faecium DO]
gi|424789721|ref|ZP_18216358.1| exodeoxyribonuclease III [Enterococcus faecium V689]
gi|424802562|ref|ZP_18228061.1| exodeoxyribonuclease III [Enterococcus faecium S447]
gi|424844097|ref|ZP_18268717.1| exodeoxyribonuclease III [Enterococcus faecium R501]
gi|424856557|ref|ZP_18280766.1| exodeoxyribonuclease III [Enterococcus faecium R499]
gi|424898737|ref|ZP_18322301.1| exodeoxyribonuclease III [Enterococcus faecium R497]
gi|424950070|ref|ZP_18365248.1| exodeoxyribonuclease III [Enterococcus faecium R496]
gi|424953364|ref|ZP_18368333.1| exodeoxyribonuclease III [Enterococcus faecium R494]
gi|424956623|ref|ZP_18371393.1| exodeoxyribonuclease III [Enterococcus faecium R446]
gi|424959074|ref|ZP_18373681.1| exodeoxyribonuclease III [Enterococcus faecium P1986]
gi|424963467|ref|ZP_18377681.1| exodeoxyribonuclease III [Enterococcus faecium P1190]
gi|424967725|ref|ZP_18381407.1| exodeoxyribonuclease III [Enterococcus faecium P1140]
gi|424970445|ref|ZP_18383957.1| exodeoxyribonuclease III [Enterococcus faecium P1139]
gi|424974530|ref|ZP_18387759.1| exodeoxyribonuclease III [Enterococcus faecium P1137]
gi|424978847|ref|ZP_18391732.1| exodeoxyribonuclease III [Enterococcus faecium P1123]
gi|424980945|ref|ZP_18393702.1| exodeoxyribonuclease III [Enterococcus faecium ERV99]
gi|424982894|ref|ZP_18395511.1| exodeoxyribonuclease III [Enterococcus faecium ERV69]
gi|424987691|ref|ZP_18400056.1| exodeoxyribonuclease III [Enterococcus faecium ERV38]
gi|424991509|ref|ZP_18403654.1| exodeoxyribonuclease III [Enterococcus faecium ERV26]
gi|424994871|ref|ZP_18406788.1| exodeoxyribonuclease III [Enterococcus faecium ERV168]
gi|424999026|ref|ZP_18410676.1| exodeoxyribonuclease III [Enterococcus faecium ERV165]
gi|424999959|ref|ZP_18411546.1| exodeoxyribonuclease III [Enterococcus faecium ERV161]
gi|425003158|ref|ZP_18414540.1| exodeoxyribonuclease III [Enterococcus faecium ERV102]
gi|425007472|ref|ZP_18418599.1| exodeoxyribonuclease III [Enterococcus faecium ERV1]
gi|425012108|ref|ZP_18422948.1| exodeoxyribonuclease III [Enterococcus faecium E422]
gi|425013534|ref|ZP_18424261.1| exodeoxyribonuclease III [Enterococcus faecium E417]
gi|425017356|ref|ZP_18427864.1| exodeoxyribonuclease III [Enterococcus faecium C621]
gi|425021463|ref|ZP_18431716.1| exodeoxyribonuclease III [Enterococcus faecium C497]
gi|425029095|ref|ZP_18435294.1| exodeoxyribonuclease III [Enterococcus faecium C1904]
gi|425033598|ref|ZP_18438554.1| exodeoxyribonuclease III [Enterococcus faecium 515]
gi|425034552|ref|ZP_18439436.1| exodeoxyribonuclease III [Enterococcus faecium 514]
gi|425038640|ref|ZP_18443244.1| exodeoxyribonuclease III [Enterococcus faecium 513]
gi|425042587|ref|ZP_18446908.1| exodeoxyribonuclease III [Enterococcus faecium 511]
gi|425044172|ref|ZP_18448350.1| exodeoxyribonuclease III [Enterococcus faecium 510]
gi|425049630|ref|ZP_18453458.1| exodeoxyribonuclease III [Enterococcus faecium 509]
gi|425051314|ref|ZP_18454984.1| exodeoxyribonuclease III [Enterococcus faecium 506]
gi|425059576|ref|ZP_18462909.1| exodeoxyribonuclease III [Enterococcus faecium 503]
gi|68196046|gb|EAN10478.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium DO]
gi|313587883|gb|EFR66728.1| exodeoxyribonuclease III [Enterococcus faecium TX0133a01]
gi|313591110|gb|EFR69955.1| exodeoxyribonuclease III [Enterococcus faecium TX0133B]
gi|313594421|gb|EFR73266.1| exodeoxyribonuclease III [Enterococcus faecium TX0133A]
gi|313597294|gb|EFR76139.1| exodeoxyribonuclease III [Enterococcus faecium TX0133C]
gi|313641358|gb|EFS05938.1| exodeoxyribonuclease III [Enterococcus faecium TX0133a04]
gi|313644519|gb|EFS09099.1| exodeoxyribonuclease III [Enterococcus faecium TX0082]
gi|388533113|gb|AFK58305.1| exodeoxyribonuclease III [Enterococcus faecium DO]
gi|402919549|gb|EJX40134.1| exodeoxyribonuclease III [Enterococcus faecium S447]
gi|402920364|gb|EJX40884.1| exodeoxyribonuclease III [Enterococcus faecium R501]
gi|402921768|gb|EJX42193.1| exodeoxyribonuclease III [Enterococcus faecium V689]
gi|402929762|gb|EJX49492.1| exodeoxyribonuclease III [Enterococcus faecium R499]
gi|402932351|gb|EJX51867.1| exodeoxyribonuclease III [Enterococcus faecium R497]
gi|402933877|gb|EJX53281.1| exodeoxyribonuclease III [Enterococcus faecium R496]
gi|402939250|gb|EJX58182.1| exodeoxyribonuclease III [Enterococcus faecium R494]
gi|402945602|gb|EJX63940.1| exodeoxyribonuclease III [Enterococcus faecium R446]
gi|402949215|gb|EJX67295.1| exodeoxyribonuclease III [Enterococcus faecium P1190]
gi|402951471|gb|EJX69397.1| exodeoxyribonuclease III [Enterococcus faecium P1986]
gi|402953715|gb|EJX71407.1| exodeoxyribonuclease III [Enterococcus faecium P1140]
gi|402956143|gb|EJX73618.1| exodeoxyribonuclease III [Enterococcus faecium P1137]
gi|402960194|gb|EJX77359.1| exodeoxyribonuclease III [Enterococcus faecium P1123]
gi|402961733|gb|EJX78737.1| exodeoxyribonuclease III [Enterococcus faecium P1139]
gi|402964834|gb|EJX81589.1| exodeoxyribonuclease III [Enterococcus faecium ERV99]
gi|402972757|gb|EJX88933.1| exodeoxyribonuclease III [Enterococcus faecium ERV69]
gi|402973819|gb|EJX89911.1| exodeoxyribonuclease III [Enterococcus faecium ERV38]
gi|402976580|gb|EJX92460.1| exodeoxyribonuclease III [Enterococcus faecium ERV26]
gi|402978889|gb|EJX94596.1| exodeoxyribonuclease III [Enterococcus faecium ERV168]
gi|402980958|gb|EJX96520.1| exodeoxyribonuclease III [Enterococcus faecium ERV165]
gi|402990162|gb|EJY05046.1| exodeoxyribonuclease III [Enterococcus faecium ERV161]
gi|402992555|gb|EJY07247.1| exodeoxyribonuclease III [Enterococcus faecium ERV102]
gi|402994365|gb|EJY08901.1| exodeoxyribonuclease III [Enterococcus faecium E422]
gi|402994911|gb|EJY09408.1| exodeoxyribonuclease III [Enterococcus faecium ERV1]
gi|403000822|gb|EJY14913.1| exodeoxyribonuclease III [Enterococcus faecium E417]
gi|403004470|gb|EJY18273.1| exodeoxyribonuclease III [Enterococcus faecium C621]
gi|403004532|gb|EJY18326.1| exodeoxyribonuclease III [Enterococcus faecium C1904]
gi|403006678|gb|EJY20306.1| exodeoxyribonuclease III [Enterococcus faecium C497]
gi|403009330|gb|EJY22785.1| exodeoxyribonuclease III [Enterococcus faecium 515]
gi|403019114|gb|EJY31740.1| exodeoxyribonuclease III [Enterococcus faecium 513]
gi|403020199|gb|EJY32755.1| exodeoxyribonuclease III [Enterococcus faecium 514]
gi|403022989|gb|EJY35297.1| exodeoxyribonuclease III [Enterococcus faecium 511]
gi|403026721|gb|EJY38668.1| exodeoxyribonuclease III [Enterococcus faecium 509]
gi|403030625|gb|EJY42301.1| exodeoxyribonuclease III [Enterococcus faecium 510]
gi|403037892|gb|EJY49141.1| exodeoxyribonuclease III [Enterococcus faecium 506]
gi|403043490|gb|EJY54397.1| exodeoxyribonuclease III [Enterococcus faecium 503]
Length = 269
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 148/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 20 LKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 74
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K+ L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 75 YAERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 134
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q IDL N N K AG+T EER
Sbjct: 135 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAAL 193
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ L + D I
Sbjct: 194 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLEPGLADAKI 252
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 253 HTDIMGSDHCPVELDL 268
>gi|345884610|ref|ZP_08836014.1| exodeoxyribonuclease [Prevotella sp. C561]
gi|345042603|gb|EGW46699.1| exodeoxyribonuclease [Prevotella sp. C561]
Length = 249
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/256 (42%), Positives = 152/256 (59%), Gaps = 10/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRACV K+ ++ + N D LQ+ + Q ++ SF Y +W
Sbjct: 1 MKFISWNVNGLRACVGKDFEQQF-KDLNADFFCLQETKMQAGQLDLSF----PGYESYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+DK G G + TK KPL V YGI + GRVIT + F ITVY PNS L+
Sbjct: 56 YADKKGYSGTAIYTKHKPLNVTYGIDIDEHDHEGRVITLEMDDFYLITVYTPNSQDGLRR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W++ F Y+ L + +I+ GD+NV Q IDL NP N K AG+T EER
Sbjct: 116 LDYRMKWEEDFQAYLH-RLDAIKPVIVCGDMNVAHQEIDLKNPKTNHKNAGFTDEEREKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL G +D FR LYP E+ Y++WS+R + AR N GWR+DY L+SE+L + ++D I
Sbjct: 175 TQLLSNGFIDTFRTLYP-EKVTYSWWSYRFR-AREKNTGWRIDYFLISERLKDRLEDAKI 232
Query: 310 RSDVQGSTHCPVVLRL 325
+++ GS HCP+ + L
Sbjct: 233 HTEIMGSDHCPIEITL 248
>gi|431779197|ref|ZP_19567393.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E4389]
gi|430642462|gb|ELB78239.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E4389]
Length = 250
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 148/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K+ L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q IDL N N K AG+T EER
Sbjct: 116 LDYRLEWEETFYNYLEN-LKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAAL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ L + D I
Sbjct: 175 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLEPGLADAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HTDIMGSDHCPVELDL 249
>gi|377809183|ref|YP_005004404.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
gi|361055924|gb|AEV94728.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
Length = 251
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 152/259 (58%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA V + + + + D +Q+ + Q+ ++ F Y+ +W
Sbjct: 1 MKLISWNVNGLRAAVT-HGFEDTFKDLDADFFCVQETKLQKGQIEIDF----PGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK KPL V YGI G+ + GR+IT ++ + IT Y PNS KLK
Sbjct: 56 YAERKGYSGTAIFTKHKPLNVTYGI-GIEEYDTEGRIITLEYANYYVITCYTPNSQPKLK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F +Y+ +L+ + +I GDLNV IDL NP N K AG++ +ER
Sbjct: 115 RLEYRMSWEDAFKNYV-DQLKKDKPVIFCGDLNVAHNEIDLKNPKTNHKNAGFSDQERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL +G D FRH YPD G Y++WS+R +AR NN GWR+DY + S L + +KD
Sbjct: 174 FTELLQSGFTDTFRHFYPDLTGIYSWWSYR-FNARKNNAGWRIDYFVTSNDLDDKLKDAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCPV L + L
Sbjct: 233 IHTEIFGSDHCPVELDIDL 251
>gi|420489725|ref|ZP_14988317.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|420523659|ref|ZP_15022077.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
gi|393105146|gb|EJC05697.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|393126008|gb|EJC26460.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
Length = 250
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ N D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSINADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMNWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|293557096|ref|ZP_06675652.1| exodeoxyribonuclease III [Enterococcus faecium E1039]
gi|293567361|ref|ZP_06678711.1| exodeoxyribonuclease III [Enterococcus faecium E1071]
gi|406581419|ref|ZP_11056574.1| exodeoxyribonuclease III [Enterococcus sp. GMD4E]
gi|406591645|ref|ZP_11065904.1| exodeoxyribonuclease III [Enterococcus sp. GMD1E]
gi|416134092|ref|ZP_11598208.1| exodeoxyribonuclease III [Enterococcus faecium E4452]
gi|430822986|ref|ZP_19441561.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0120]
gi|430825958|ref|ZP_19444156.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0164]
gi|430828054|ref|ZP_19446184.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0269]
gi|430835361|ref|ZP_19453351.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0680]
gi|430838568|ref|ZP_19456514.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0688]
gi|430843577|ref|ZP_19461476.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1050]
gi|430857677|ref|ZP_19475310.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1552]
gi|430860673|ref|ZP_19478272.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1573]
gi|430865725|ref|ZP_19481300.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1574]
gi|430882969|ref|ZP_19484174.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1575]
gi|430946137|ref|ZP_19485613.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1576]
gi|431002064|ref|ZP_19488655.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1578]
gi|431149614|ref|ZP_19499472.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1620]
gi|431230291|ref|ZP_19502494.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1622]
gi|431250993|ref|ZP_19503927.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1623]
gi|431301513|ref|ZP_19507832.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1626]
gi|431375556|ref|ZP_19510351.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1627]
gi|431742657|ref|ZP_19531542.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2071]
gi|431746687|ref|ZP_19535512.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2134]
gi|431764630|ref|ZP_19553167.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E4215]
gi|431767687|ref|ZP_19556134.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1321]
gi|447912130|ref|YP_007393542.1| Exodeoxyribonuclease III [Enterococcus faecium NRRL B-2354]
gi|291589963|gb|EFF21761.1| exodeoxyribonuclease III [Enterococcus faecium E1071]
gi|291600740|gb|EFF31036.1| exodeoxyribonuclease III [Enterococcus faecium E1039]
gi|364092709|gb|EHM35053.1| exodeoxyribonuclease III [Enterococcus faecium E4452]
gi|404452675|gb|EJZ99832.1| exodeoxyribonuclease III [Enterococcus sp. GMD4E]
gi|404467425|gb|EKA12542.1| exodeoxyribonuclease III [Enterococcus sp. GMD1E]
gi|430442915|gb|ELA52936.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0120]
gi|430445666|gb|ELA55396.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0164]
gi|430484135|gb|ELA61170.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0269]
gi|430489352|gb|ELA65966.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0680]
gi|430491810|gb|ELA68262.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0688]
gi|430497436|gb|ELA73473.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1050]
gi|430546887|gb|ELA86829.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1552]
gi|430552071|gb|ELA91821.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1573]
gi|430552790|gb|ELA92516.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1574]
gi|430556526|gb|ELA96024.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1575]
gi|430558609|gb|ELA98021.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1576]
gi|430562184|gb|ELB01435.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1578]
gi|430574277|gb|ELB13055.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1622]
gi|430575503|gb|ELB14219.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1620]
gi|430578900|gb|ELB17447.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1623]
gi|430580703|gb|ELB19170.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1626]
gi|430583020|gb|ELB21419.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1627]
gi|430607891|gb|ELB45187.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2071]
gi|430608589|gb|ELB45835.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2134]
gi|430630640|gb|ELB66995.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1321]
gi|430630770|gb|ELB67119.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E4215]
gi|445187839|gb|AGE29481.1| Exodeoxyribonuclease III [Enterococcus faecium NRRL B-2354]
Length = 250
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 148/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K+ L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q IDL N N K AG+T EER
Sbjct: 116 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAAL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ L + D I
Sbjct: 175 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLEPRLADAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HTDIMGSDHCPVELDL 249
>gi|261208808|ref|ZP_05923245.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium TC 6]
gi|289566402|ref|ZP_06446829.1| exodeoxyribonuclease III [Enterococcus faecium D344SRF]
gi|294614472|ref|ZP_06694388.1| exodeoxyribonuclease III [Enterococcus faecium E1636]
gi|430849109|ref|ZP_19466891.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1185]
gi|260077310|gb|EEW65030.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium TC 6]
gi|289161777|gb|EFD09650.1| exodeoxyribonuclease III [Enterococcus faecium D344SRF]
gi|291592780|gb|EFF24373.1| exodeoxyribonuclease III [Enterococcus faecium E1636]
gi|430538322|gb|ELA78615.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1185]
Length = 250
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 148/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K+ L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q IDL N N K AG+T EER
Sbjct: 116 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAAL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ L + D I
Sbjct: 175 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLEPRLADAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HTDIMGSDHCPVELDL 249
>gi|425057149|ref|ZP_18460578.1| exodeoxyribonuclease III [Enterococcus faecium 504]
gi|403041007|gb|EJY52049.1| exodeoxyribonuclease III [Enterococcus faecium 504]
Length = 269
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 148/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 20 LKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 74
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K+ L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 75 YAERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 134
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q IDL N N K AG+T EER
Sbjct: 135 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAAL 193
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ L + D I
Sbjct: 194 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLEPRLADAKI 252
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 253 HTDIMGSDHCPVELDL 268
>gi|420397962|ref|ZP_14897175.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
gi|393014636|gb|EJB15807.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|66910408|gb|AAH97053.1| Apex1 protein [Danio rerio]
gi|197246969|gb|AAI64240.1| Apex1 protein [Danio rerio]
Length = 296
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 149/259 (57%), Gaps = 20/259 (7%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+++WNV+GLRA VKKN L +R +E +P + H +W
Sbjct: 55 MKITSWNVDGLRAWVKKNG--------------LDWVR-KEKALPADITGMPEYPHKYWA 99
Query: 132 GSD--KGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLK 188
GS+ +G GV +L K +PL V YGI + + GRVITA+F F +T YVPN+ L
Sbjct: 100 GSEDKEGYSGVAMLCKTEPLNVTYGIGKEEHDKEGRVITAEFPDFFLVTAYVPNASRGLV 159
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R WD F Y+ L + +++ GDLNV Q IDL NP N K AG+T EER
Sbjct: 160 RLDYRKTWDVDFRAYLCG-LDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAGFTPEEREG 218
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL+ G D+FR LYPD+ AYT+W++ +AR N GWRLDY ++S L + D
Sbjct: 219 FTQLLEAGFTDSFRELYPDQAYAYTFWTYM-MNARSKNVGWRLDYFVLSSALLPGLCDSK 277
Query: 309 IRSDVQGSTHCPVVLRLSL 327
IR+ GS HCP+ L L++
Sbjct: 278 IRNTAMGSDHCPITLFLAV 296
>gi|383810829|ref|ZP_09966315.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
gi|383356543|gb|EID34041.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
Length = 249
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 153/256 (59%), Gaps = 10/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRACV K+ ++ + N D LQ+ + Q ++ SF Y +W
Sbjct: 1 MKFISWNVNGLRACVGKDFEQQF-KDFNADFFCLQETKMQAGQLDLSF----PGYESYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+DK G G + TK KPL+V YGI + GRVIT + F +TVY PNS +L+
Sbjct: 56 YADKKGYSGTAIFTKHKPLSVTYGINIDEHDHEGRVITLEMDDFYLVTVYTPNSQDELRR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W++ F Y+ +L +I+ GD+NV Q IDL NP N + AG+T EER
Sbjct: 116 LEYRMKWEEDFQSYLH-KLDETKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEEREKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR LYP E+ Y++WS+R + AR N GWR+DY L+SE+L + + D I
Sbjct: 175 TELLNNGFIDTFRTLYP-EQVTYSWWSYRFR-AREKNTGWRIDYFLISERLRDRLIDAKI 232
Query: 310 RSDVQGSTHCPVVLRL 325
++ GS HCP+ + L
Sbjct: 233 HTETMGSDHCPIEIDL 248
>gi|421715822|ref|ZP_16155136.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
gi|407214330|gb|EKE84179.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L ++KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTHLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|431077776|ref|ZP_19495241.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1604]
gi|431112344|ref|ZP_19497720.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1613]
gi|430566191|gb|ELB05312.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1604]
gi|430569298|gb|ELB08315.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1613]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/256 (39%), Positives = 148/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ + Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDIPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K+ L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q IDL N N K AG+T EER
Sbjct: 116 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAAL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ L + D I
Sbjct: 175 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLETRLADAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HTDIMGSDHCPVELDL 249
>gi|431514988|ref|ZP_19516181.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1634]
gi|430586004|gb|ELB24272.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1634]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 148/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K+ L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAERKGYSGTAIFAKKPALNTTYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q IDL N N K AG+T EER
Sbjct: 116 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAAL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ L + D I
Sbjct: 175 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLEPRLADAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HTDIMGSDHCPVELDL 249
>gi|420473317|ref|ZP_14971995.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|420525338|ref|ZP_15023743.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
gi|393090445|gb|EJB91078.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|393130144|gb|EJC30574.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420496454|ref|ZP_14995017.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
gi|393110512|gb|EJC11037.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420520352|ref|ZP_15018787.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|425433141|ref|ZP_18813679.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
gi|393124748|gb|EJC25215.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|410714293|gb|EKQ71771.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|210135690|ref|YP_002302129.1| exodeoxyribonuclease III [Helicobacter pylori P12]
gi|210133658|gb|ACJ08649.1| exodeoxyribonuclease [Helicobacter pylori P12]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVNYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTCLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420504982|ref|ZP_15003506.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
gi|393154128|gb|EJC54413.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LNYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|421715896|ref|ZP_16155208.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
gi|407221794|gb|EKE91597.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + DI +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADIFCIQESKIQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420439551|ref|ZP_14938514.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
gi|393053870|gb|EJB54812.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|387783040|ref|YP_005793753.1| exodeoxyribonuclease [Helicobacter pylori 51]
gi|261838799|gb|ACX98565.1| exodeoxyribonuclease [Helicobacter pylori 51]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIDEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420431269|ref|ZP_14930290.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
gi|393044260|gb|EJB45254.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARNKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420396107|ref|ZP_14895329.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|420402996|ref|ZP_14902182.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
gi|393011086|gb|EJB12275.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|393020162|gb|EJB21301.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|291528729|emb|CBK94315.1| exodeoxyribonuclease III [Eubacterium rectale M104/1]
Length = 251
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/253 (39%), Positives = 151/253 (59%), Gaps = 11/253 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRACV+K +++ + D +Q+ + Q ++ L YH +W
Sbjct: 1 MKFISWNVNGLRACVQK-GFLDFFNSIDADFFCIQESKLQAGQID----LDLPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + K +PL+V YGI G+ ++ GRVIT ++ F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFAKNEPLSVSYGI-GIEEHDKEGRVITLEYDNFYLVTCYTPNSQNELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F +Y+++ L + +++ GDLNV IDL NP N K AG++ EER
Sbjct: 115 RLPYRMQWEDDFREYLKT-LDAKKPVVLCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL +G D FR+ YPD EG Y++WS+R K AR N GWR+DY + S+++ + ++
Sbjct: 174 MTELLGSGFTDTFRYFYPDAEGIYSWWSYRFK-AREKNAGWRIDYFITSKRINDKLQKAA 232
Query: 309 IRSDVQGSTHCPV 321
I +DV GS HCPV
Sbjct: 233 IHTDVLGSDHCPV 245
>gi|392531481|ref|ZP_10278618.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum ATCC 35586]
Length = 251
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 156/258 (60%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VKK ++ + + D LQ+ + Q ++ L YH +W
Sbjct: 1 MKLISWNVNGLRAVVKK-GFIDIFNQLDADFFCLQETKLQAGQID----FELPGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK +P V YG+ +Q GRVIT + + +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIFTKHEPDEVFYGLGKEEHDQEGRVITLSYPDYYVVTCYTPNSQNELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W++ F Y+ ++L + +I+ GDLNV ++ID+ N N K AG+T EER F
Sbjct: 116 LNYRMTWEEDFLAYL-NQLDAEKPVIVCGDLNVAHENIDIKNWKTNRKNAGFTDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
E L+ G +D FR+ YP+ EGAY++WS+R +AR NN GWR+DY +VSE+L + I
Sbjct: 175 TEFLENGYIDTFRYFYPELEGAYSWWSYR-FNARANNAGWRIDYFIVSERLQEKLVSAAI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
++V GS HCPV L+++L
Sbjct: 234 LNEVVGSDHCPVELQINL 251
>gi|208435390|ref|YP_002267056.1| exodeoxyribonuclease III [Helicobacter pylori G27]
gi|208433319|gb|ACI28190.1| exodeoxyribonuclease [Helicobacter pylori G27]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420452902|ref|ZP_14951743.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
gi|393066715|gb|EJB67534.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
Length = 250
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|373452187|ref|ZP_09544104.1| exodeoxyribonuclease III (xth) [Eubacterium sp. 3_1_31]
gi|371967081|gb|EHO84557.1| exodeoxyribonuclease III (xth) [Eubacterium sp. 3_1_31]
Length = 251
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 155/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RAC+ K +++ E + DI +Q+ + Q P Y+ +
Sbjct: 1 MKMVSWNVNGIRACMTK-GFMDFFQEIDADIFCIQETKMQ----PGQLDIVTPGYYQYMN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G G + TKEKP+ V Y + G+ + GRVIT +++ F + VY PNS L
Sbjct: 56 SADKKGYSGTMVFTKEKPIAVTYDL-GIDEHDHEGRVITCEYENFYLVCVYTPNSKDGLL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+ + L+ ++I+ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMQWEDDFRAYLNA-LKEKKSVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
L +G +D+FR+LYP++EG Y++WS+R K AR N GWR+DY LVSE + I++
Sbjct: 174 MTTLQQSGFIDSFRYLYPEQEGIYSWWSYRFK-AREKNAGWRIDYFLVSEDAKDKIQEAS 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +DV GS HCPV L +
Sbjct: 233 IHTDVFGSDHCPVSLDIDF 251
>gi|420447816|ref|ZP_14946702.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|420476276|ref|ZP_14974943.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
gi|393061877|gb|EJB62737.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|393090183|gb|EJB90817.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
Length = 250
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|424779917|ref|ZP_18206803.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422843456|gb|EKU27893.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 253
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKK ++ + + D LQ+ + QE ++ L Y +W
Sbjct: 1 MKFISWNVNGLRAAVKK-GFLDVFNQLDADFFCLQETKLQEGQID----LPLEGYTQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + K+ L+V+YG+ G+ + GR+IT ++ F +T Y PN+ +LK
Sbjct: 56 YAEKKGYSGTAIFAKQPALSVQYGL-GIEELDHEGRLITLEYPEFYLVTCYTPNAQSELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
IDFR+ W+ F +Y+ +L +II GDLNV Q+IDL N N AG++ EER
Sbjct: 115 RIDFRLQWEAAFREYLH-QLDEKKPVIICGDLNVAHQNIDLKNWRPNRGKAGFSDEERNA 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+TG D FR+LYP+ G Y++WS+R AR NN GWR+DY LVS +L +I++
Sbjct: 174 FTELLNTGFTDTFRYLYPETTGVYSWWSYR-FHARENNAGWRIDYFLVSNRLQKDIQEAC 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +D+ GS HCPV L L
Sbjct: 233 IYTDILGSDHCPVGLTL 249
>gi|420442874|ref|ZP_14941805.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
gi|393056819|gb|EJB57729.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
Length = 250
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEMEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|281422472|ref|ZP_06253471.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
gi|281403455|gb|EFB34135.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
Length = 250
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 155/259 (59%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRACV K+ ++ E + D LQ+ + QE ++ F Y +W
Sbjct: 1 MKFISWNVNGLRACVGKDFENQF-KELDADFFCLQETKMQEGQLDLQFEG----YESYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK KPL V YG+ GV + GR+IT ++ +F +T Y PNS +LK
Sbjct: 56 YAEKKGYSGTAIYTKHKPLNVSYGM-GVEEHDHEGRIITLEYDQFYLVTCYTPNSQTELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F +++S L + +II GDLNV + ID+ NP N + AG+T EER
Sbjct: 115 RLDYRMTWEDDFRKFLKS-LDAKKPVIICGDLNVAHEEIDIKNPKTNRRNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LL+ G D+FR+L+PD E Y++WS+R K AR N GWR+DY LVS+++ I +
Sbjct: 174 MTVLLNDGFTDSFRYLHPD-EVTYSWWSYRFK-AREKNAGWRIDYFLVSDRIKEQITEAK 231
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCPV + L+
Sbjct: 232 IHTEIMGSDHCPVEVDLTF 250
>gi|390952993|ref|YP_006416751.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
gi|390418979|gb|AFL79736.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
Length = 254
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 164/260 (63%), Gaps = 10/260 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA KK+ + I + +PD++ LQ+ + Q +EV E+ + ++ YH ++
Sbjct: 1 MKIISWNVNGVRAITKKD-FFDDISKMDPDVLCLQETKAQNEEVEEALSE-MTDYHQYYN 58
Query: 132 GSD-KGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++ KG GV +L+K++P++V Y + G++ + GRVI A++ F + VYVPNSG KL+
Sbjct: 59 SAERKGYSGVAILSKKEPISVTYDM-GIAEHDTEGRVICAEYDTFYLVNVYVPNSGQKLE 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEERR 247
+D+R WD F++Y+++ + ++I+ GDLNV Q+IDL N N KTAGYT E
Sbjct: 118 RLDYRKGWDTDFHNYLKN-IEKTKSVILCGDLNVAHQAIDLKNDKANYNKTAGYTQIEID 176
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
L+ G VD FRH +P E AYTYWS+R KS R N GWR+DY LVS L +
Sbjct: 177 GMDNFLNEGFVDTFRHFHP-ETVAYTYWSYRFKS-RERNTGWRIDYFLVSNPLVEKVNKV 234
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
I S+ GS HCP+ L + +
Sbjct: 235 EILSEYFGSDHCPIKLEIGI 254
>gi|420476560|ref|ZP_14975223.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
gi|393094985|gb|EJB95590.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
Length = 250
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420491838|ref|ZP_14990414.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|420525605|ref|ZP_15024008.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
gi|393108533|gb|EJC09067.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|393133626|gb|EJC34042.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
Length = 250
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFK----GYFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|421719100|ref|ZP_16158390.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
gi|407218577|gb|EKE88401.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
Length = 250
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|387908710|ref|YP_006339044.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
gi|387573645|gb|AFJ82353.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
Length = 250
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSIDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|170665740|gb|ACB29409.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 538
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 115/273 (42%), Positives = 163/273 (59%), Gaps = 16/273 (5%)
Query: 67 PYTTK-VKVSTWNVNGLRACVK--KNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
P TK VKV TWNVNGLR +K + ++ EN DI+ LQ+ + Q +V E + +
Sbjct: 270 PEGTKCVKVMTWNVNGLRGLLKFESFSALQLAQRENFDILCLQETKLQVKDVEEIKKTLI 329
Query: 124 SHY-HMFWIGS--DKGQGGVGLLTKEKPLTVKYGIPGVS----NQRGRVITAKFKRFTFI 176
Y H FW S G G ++++ KPL+V+YG G+S + GR++TA+F F I
Sbjct: 330 DGYDHSFWSCSVSKLGYSGTAIISRIKPLSVRYGT-GLSGSDHDTEGRIVTAEFDSFYLI 388
Query: 177 TVYVPNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKN 235
YVPNSG LK + +R+ WD+ ++I+ EL + ++++GDLN + ID+ NP N
Sbjct: 389 NTYVPNSGDGLKRLSYRIEEWDRTLSNHIK-ELEKSKPVVLTGDLNCAHEEIDIFNPAGN 447
Query: 236 VKTAGYTVEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYH 294
++AG+T EER++F LD G VD FR +P G YTYW +R+ R NKGWRLDY
Sbjct: 448 KRSAGFTEEERQSFGANFLDKGFVDTFRKQHPGVVG-YTYWGYRH-GGRKTNKGWRLDYF 505
Query: 295 LVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
LVS+ +A N+ D I D+ GS HCP+ L L L
Sbjct: 506 LVSQSIAANVHDSYILPDINGSDHCPIGLILKL 538
>gi|374710435|ref|ZP_09714869.1| apurinic/apyrimidinic endonuclease [Sporolactobacillus inulinus
CASD]
Length = 253
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 154/258 (59%), Gaps = 8/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNG RA +K ++ E D + +Q+ + +D+V + YH FW
Sbjct: 1 MKFISWNVNGFRALQRKMDVFSWLKETGADALCIQETKLHQDQV----QIDTPGYHQFWN 56
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG G + TK KPL V YG+ V +Q GR+IT +++ + +TVY PN+ L
Sbjct: 57 DAVRKGYSGTAIFTKNKPLRVTYGMGIEVHDQEGRLITLEYEDYYLVTVYTPNAKRDLTR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +R+ W F DY++ L +I GDLNV Q+IDL P N +G+T+EER +F
Sbjct: 117 LAYRLEWGAAFTDYMK-RLDEKKPVIFCGDLNVAHQAIDLTYPKNNKGNSGFTIEEREDF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL+ G VD+FRHLYP+ AY++WSF +AR N GWR+DY ++S+ L+++I+D +
Sbjct: 176 TALLNNGFVDSFRHLYPERTDAYSWWSFL-FNARERNIGWRIDYFVLSKCLSSSIRDAKL 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
+++ GS HCPV L L L
Sbjct: 235 LTEIYGSDHCPVELDLDL 252
>gi|225376286|ref|ZP_03753507.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
gi|225211932|gb|EEG94286.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
Length = 255
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/255 (40%), Positives = 150/255 (58%), Gaps = 11/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRAC++K +++ E + D +Q+ + QE ++ L YH FW
Sbjct: 5 MKFISWNVNGLRACMQK-GFLDFFNEVDADFFCVQETKLQEGQIA----LDLPGYHQFWN 59
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL+V YGI G+ + GRVIT ++ F +T Y PNS +L
Sbjct: 60 YAEKKGYSGTAIFTKHEPLSVSYGI-GIPEHDHEGRVITLEYDAFYLVTCYTPNSQNELA 118
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W++ F +++ L +I+ GDLNV + IDL NP N K AG++ EER
Sbjct: 119 RLPYRMQWEEDFLAFLK-RLDEVKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 177
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LL++G D FR+ YPD+EG Y++WS+R K AR N GWR+DY + S L ++
Sbjct: 178 MTTLLNSGFTDTFRYFYPDKEGIYSWWSYRFK-AREKNAGWRIDYFITSRCLDEKLQSAG 236
Query: 309 IRSDVQGSTHCPVVL 323
I ++V GS HCPV L
Sbjct: 237 IHTEVYGSDHCPVEL 251
>gi|420421296|ref|ZP_14920374.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
gi|393037814|gb|EJB38848.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
Length = 250
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNNVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|429738347|ref|ZP_19272158.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
gi|429160421|gb|EKY02885.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
Length = 249
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 151/257 (58%), Gaps = 12/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRACV K+ ++ N D LQ+ + Q ++ F Y +W
Sbjct: 1 MKFISWNVNGLRACVGKDFEAQF-KTLNADFFCLQETKMQAGQLYLQF----DGYQSYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G G + T+ PL+V YGI GV + GRVIT + F +TVY PNS +LK
Sbjct: 56 YADKRGYSGTAIYTRHTPLSVTYGI-GVDAHDHEGRVITLEMNDFYLVTVYTPNSQDELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F ++ + L + +I+ GD+NV Q ID+ NP N + AG+T EER
Sbjct: 115 RLDYRMTWEDDFKTFLLA-LDARKPVIVCGDMNVAHQEIDIKNPKTNRRNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LLD+G D FR +YP EE Y++WS+R K AR N GWR+DY LVS++L I D
Sbjct: 174 MTVLLDSGFTDTFRFMYP-EEVTYSWWSYRFK-ARERNTGWRIDYFLVSDRLKPQIADAK 231
Query: 309 IRSDVQGSTHCPVVLRL 325
I +D+ GS HCPV L L
Sbjct: 232 IHTDILGSDHCPVELDL 248
>gi|420415952|ref|ZP_14915065.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
gi|393031857|gb|EJB32928.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
Length = 250
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|302787589|ref|XP_002975564.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
gi|300156565|gb|EFJ23193.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
Length = 306
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 117/286 (40%), Positives = 171/286 (59%), Gaps = 20/286 (6%)
Query: 54 VKFDISHEEGSRKPYTTK-VKVSTWNVNGLRACVKKNACVE---YIL-----EENPDIMA 104
+ +D S S P VKV +WNVNGLRAC+K+ +E +L E+ D++
Sbjct: 19 IAYDPSTMRPSSPPSEKNLVKVISWNVNGLRACMKRKNELEEEGSVLARLANSEDFDVLC 78
Query: 105 LQQIRCQEDEVPESFRKSLSHY-HMFWIGSDK--GQGGVGLLTKEKPLTVKYGIPGVSNQ 161
LQ+ + QE +V +K L Y + FW S G G L+++ KP++V YG+ G+S
Sbjct: 79 LQETKLQEKDVEAIKQKILGGYSNSFWTCSSSKLGYSGCALISRIKPVSVTYGL-GISQH 137
Query: 162 --RGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISG 218
GRV+TA+F F ++VYVPNSG +L+ + +R WD F Y+ EL +I++G
Sbjct: 138 DGEGRVVTAEFDTFFLVSVYVPNSGQRLERLTYRTTEWDPAFSTYLL-ELEKRKPVIVTG 196
Query: 219 DLNVCLQSIDLANPDKNVKTAGYTVEERRNFR-ELLDTGLVDAFRHLYPDEEGAYTYWSF 277
DLN + ID+ +PD N ++AG+T EER +F+ +D GLVD FR +P G +TYWS+
Sbjct: 197 DLNCAHEEIDIYDPDGNKRSAGFTCEERTSFQTNFIDKGLVDTFRKQHPLAVG-FTYWSY 255
Query: 278 RNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVL 323
R+ +AR NKGWRLDY LVS+ L +N+ D + + GS HCP+ L
Sbjct: 256 RS-NARPQNKGWRLDYFLVSQGLVSNVADSYVLPQLDGSDHCPIGL 300
>gi|224137778|ref|XP_002322649.1| predicted protein [Populus trichocarpa]
gi|222867279|gb|EEF04410.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 128/351 (36%), Positives = 198/351 (56%), Gaps = 36/351 (10%)
Query: 1 MKRSADVIQKSDDENQIPKKQVKFDISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISH 60
K+S +++S E++I K V +I K+K+ K+DD +P+ + +SH
Sbjct: 90 FKQSKRRMKQSPVEDEIVK--VGTEIVTTKRKLS------IKTDDLVTLPQAEPWTVLSH 141
Query: 61 EEGSRK--PYTTK------------VKVSTWNVNGLRACVKKN--ACVEYILEENPDIMA 104
++ + PY + VK+ +WNVNGLRA +K + +E EN D++
Sbjct: 142 KKPQKGWIPYNPRTMRPAPLTDGNSVKLMSWNVNGLRALLKFEGFSALELAQRENFDVLC 201
Query: 105 LQQIRCQEDEVPESFRKSL--SHYHMFWIGSDK--GQGGVGLLTKEKPLTVKYGIPGVSN 160
LQ+ + Q + +S ++ L + + FW S+ G G ++++ KPL+V YG+ G+ +
Sbjct: 202 LQETKLQASKDVDSIKQCLIDGYENSFWTCSNAKLGYSGTAIVSRIKPLSVCYGL-GIPD 260
Query: 161 Q--RGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIIS 217
GRV+TA+F F + YVPNSG LK + +R+ WD +Y++ EL + +I++
Sbjct: 261 HDSEGRVVTAEFDSFYLVNTYVPNSGDGLKRLSYRITQWDPSLSNYMK-ELEKSKPVILT 319
Query: 218 GDLNVCLQSIDLANPDKNVKTAGYTVEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWS 276
GDLN Q ID+ NP N ++AG+T EER++F L GLVD FR +P+ G YTYW
Sbjct: 320 GDLNCAHQEIDIFNPAGNKRSAGFTEEERQSFGSNFLSKGLVDTFRKQHPNVVG-YTYWG 378
Query: 277 FRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+R+ R NKGWRLDY LVSE +A+ + D I DV GS HCP+ L L +
Sbjct: 379 YRH-GGRKTNKGWRLDYFLVSESIADKVHDSYIVPDVNGSDHCPIGLVLKV 428
>gi|431416509|ref|ZP_19512398.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1630]
gi|431759796|ref|ZP_19548405.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3346]
gi|430588982|gb|ELB27145.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1630]
gi|430625637|gb|ELB62257.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3346]
Length = 250
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 148/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVNKN-FLEVFHELDGDFFCLQETKLQAGQID----LDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K+ L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q IDL N N K AG+T EER
Sbjct: 116 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAAL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ L + D I
Sbjct: 175 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLEPRLADAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HTDIMGSDHCPVELDL 249
>gi|254780031|ref|YP_003058138.1| exodeoxyribonuclease III [Helicobacter pylori B38]
gi|254001944|emb|CAX30201.1| Putative exodeoxyribonuclease [Helicobacter pylori B38]
Length = 250
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420478325|ref|ZP_14976978.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
gi|393097099|gb|EJB97693.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
Length = 250
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 151/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLNVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|317133644|ref|YP_004092958.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
gi|315471623|gb|ADU28227.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
Length = 256
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 103/257 (40%), Positives = 154/257 (59%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC++K ++ E DI +Q+ + PE + Y FW
Sbjct: 1 MKLISWNVNGLRACMQK-GFADFFNREEADIFCVQETKMH----PEQADFAFDGYQSFWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKY--GIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G G + T+ PL+V+Y G P + + GRVIT + + F + VY PNS L
Sbjct: 56 SAEKKGYSGTAVFTRVPPLSVRYDMGEPEHTGE-GRVITVESEAFFLVNVYTPNSQRDLV 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+ + L + +++ GD+NV + ID+ NP N+ AG+T EER+
Sbjct: 115 RLDYRMRWEDAFRAYLLT-LNRDKPVVVCGDMNVAHREIDIKNPKSNIHNAGFTPEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LL+ G +D FR LYP+++ AYT+WS+ K AR N GWR+DY LVS++L ++D
Sbjct: 174 MTDLLEAGFIDTFRALYPEQKDAYTWWSYMRK-ARERNAGWRIDYFLVSDRLRGQVEDST 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +DV GS HCPV L L
Sbjct: 233 IYADVPGSDHCPVGLLL 249
>gi|420483017|ref|ZP_14981651.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
gi|393097621|gb|EJB98214.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
Length = 250
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|332687227|ref|YP_004457001.1| exodeoxyribonuclease III [Melissococcus plutonius ATCC 35311]
gi|332371236|dbj|BAK22192.1| exodeoxyribonuclease III [Melissococcus plutonius ATCC 35311]
Length = 254
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 153/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
+K +WNVNGLRA VKKN Y+ E + D +Q+ + Q+ ++ L YH +W
Sbjct: 1 MKCISWNVNGLRAIVKKNFI--YVFNELDADFFCVQETKLQDGQID----LELPGYHQYW 54
Query: 131 -IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG GV + KE V YG+ +Q GR++T ++ F + Y PNS +LK
Sbjct: 55 DYAIKKGYSGVAVFAKEAAQKVYYGLNMEEHDQEGRLLTLEYPNFYLVNCYTPNSQPELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F DY+ +L+S +I+ GDLNV Q IDL N N +AG++ EER
Sbjct: 115 RLAYRMTWENAFRDYL-IKLKSKKQVILCGDLNVAHQPIDLKNWRTNQHSAGFSPEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LLD G +D +R+ YPD+EG Y++WS+R +AR NN GWR+DY +VS+ L +K+
Sbjct: 174 MTKLLDNGFIDTYRYFYPDKEGVYSWWSYR-FNARKNNAGWRIDYFIVSDNLKPTLKEAT 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCPV + L L
Sbjct: 233 IYTEITGSDHCPVGVELDL 251
>gi|420425904|ref|ZP_14924964.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
gi|393040802|gb|EJB41820.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
Length = 250
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFK----GYFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GR+IT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRIITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|15612480|ref|NP_224133.1| exodeoxyribonuclease III [Helicobacter pylori J99]
gi|420464550|ref|ZP_14963321.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
gi|4156036|gb|AAD06994.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
gi|393077779|gb|EJB78526.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
Length = 250
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFK----GYFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|419419212|ref|ZP_13959471.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
gi|384372800|gb|EIE28363.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
Length = 250
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNDGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|377832034|ref|ZP_09814998.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
gi|377554041|gb|EHT15756.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
Length = 252
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 149/259 (57%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
K +WNVNGLRA +K + ++ E + D +Q+ + P L YH +W
Sbjct: 2 TKFISWNVNGLRAAIK-HGFLQVFNEMDADFFCIQETKL----APGQLDLDLPDYHQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGI--PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + K+ PL+V+YGI P ++ GRVIT ++ F I YVPNSG +LK
Sbjct: 57 YAEKKGYSGTAIFAKQPPLSVQYGINVPEFDHE-GRVITLEYPDFYLINTYVPNSGAELK 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+DFR +++ FY+Y+ ++L +I+ GDLNV Q IDL NP N G+T EER +
Sbjct: 116 RLDFRHGFNEAFYEYV-NQLSQQKSIVWCGDLNVAHQEIDLKNPQSNHHHPGFTDEERFD 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL +G D FR+ YPD+E +Y++WS+R AR N GWR+DY + S L + + D
Sbjct: 175 FSKLLKSGFTDTFRYFYPDQEHSYSWWSYRFH-ARQRNAGWRIDYFVASADLDSQLVDAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + GS HCPV L + L
Sbjct: 234 IHDQILGSDHCPVELDIQL 252
>gi|389816348|ref|ZP_10207511.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
gi|388465341|gb|EIM07660.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
Length = 251
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 156/258 (60%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KK +++ E + D+ LQ+I+ QE ++ L Y+ +W
Sbjct: 1 MKLISWNVNGLRAVMKK-GFMDFFTEADADVFCLQEIKLQEGQI----EMDLPGYYTYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+PL+++YG+ + GR+I +F +TVY PNS L
Sbjct: 56 YAHKKGYSGTAIFTKEEPLSIQYGLGSEEHDTEGRMIALEFDGHYVVTVYTPNSQHGLLR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R++W++ ++++ L + +I+ GDLNV + IDL NP N K +G+T +ER
Sbjct: 116 LDYRLLWEEAILSFVKT-LDNQKPVILCGDLNVAHEEIDLKNPKANKKNSGFTPDERGKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ L G VD FRH +P E G Y++WS+R+ + R N GWR+DY + S++L +K I
Sbjct: 175 TQFLTDGFVDTFRHFHPTETGFYSWWSYRS-NCREKNVGWRIDYFIASQKLLPRLKSAKI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
+DV GS HCPV L+++L
Sbjct: 234 HADVWGSDHCPVELQIAL 251
>gi|385221296|ref|YP_005782768.1| exodeoxyribonuclease III [Helicobacter pylori India7]
gi|317010103|gb|ADU80683.1| exodeoxyribonuclease III [Helicobacter pylori India7]
Length = 250
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLVSWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +K++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFSKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LNYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|308185296|ref|YP_003929429.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|420454456|ref|ZP_14953289.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
gi|308061216|gb|ADO03112.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|393067777|gb|EJB68584.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
Length = 250
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420473134|ref|ZP_14971815.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
gi|393086638|gb|EJB87312.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
Length = 250
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFELFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LNYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKMRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420405856|ref|ZP_14905029.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
gi|393021675|gb|EJB22805.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
Length = 250
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GR++T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRMVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|386746941|ref|YP_006220158.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
gi|384553190|gb|AFI08138.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
Length = 250
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 153/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LNYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTCLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|257413807|ref|ZP_04744296.2| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|257202214|gb|EEV00499.1| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|291538795|emb|CBL11906.1| exodeoxyribonuclease III [Roseburia intestinalis XB6B4]
Length = 256
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC++K +++ E + DI +Q+ + QE ++ L Y +W
Sbjct: 5 MKLISWNVNGLRACIQK-GFLDFFHETDADIFCIQESKLQEGQID----LPLPGYFSYWN 59
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL V YGI G+ ++ GRVIT ++ F +T Y PNS +L
Sbjct: 60 YAKKKGYSGTAIFTKKEPLNVTYGI-GIEEHDKEGRVITLEYPDFYMVTCYTPNSQNELA 118
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y++ L + +I+ GDLNV + IDL NP N K AG++ EER
Sbjct: 119 RLPYRMQWEDDFRAYLK-RLDGSKPVILCGDLNVAHEEIDLKNPKTNRKNAGFSDEEREK 177
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LLD G D FR+ YPD E Y++WS+R + AR N GWR+DY + S+++ + +
Sbjct: 178 MTKLLDAGFTDTFRYFYPDTEQIYSWWSYRFR-AREKNAGWRIDYFITSKRMNDKLTGAK 236
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +DV GS HCPV L + L
Sbjct: 237 IHTDVFGSDHCPVELDIDL 255
>gi|421709245|ref|ZP_16148605.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|421722501|ref|ZP_16161760.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
gi|407211802|gb|EKE81667.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|407226285|gb|EKE96051.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
Length = 250
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNDGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|303234331|ref|ZP_07320970.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
gi|302494447|gb|EFL54214.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
Length = 253
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 158/259 (61%), Gaps = 9/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG RA +KK ++ N DI LQ+I+ +E+++ + ++ YH +
Sbjct: 1 MKLISWNVNGYRAVMKK-GFMDAFNSLNADIFCLQEIKMKENQMTDEM--NIEGYHRYSY 57
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G G + TK +P+ V +GI G+ + GRVIT +++ F + VY PNS KL+
Sbjct: 58 SANKAGYSGTLVYTKVEPIGVSFGI-GIDEHDTEGRVITCEYEDFFLVNVYTPNSKQKLE 116
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F++Y+ LR +I+ GDLNV IDL NP N ++AG+T EER
Sbjct: 117 RLDYRMVWEDEFHNYLNI-LRDRKPVIVCGDLNVAHNEIDLKNPQSNRRSAGFTDEERNK 175
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LL+ G +D FR+ YPD+ Y+YWS+ K AR N GWR+DY +VS+ L +N+ D
Sbjct: 176 MSLLLNDGYIDTFRYFYPDKTDEYSYWSYFAK-ARERNAGWRIDYFIVSDDLKDNLVDAK 234
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + GS HCPV L ++
Sbjct: 235 IHQSIMGSDHCPVELEINF 253
>gi|420424301|ref|ZP_14923369.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
gi|393039589|gb|EJB40616.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
Length = 250
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|310779700|ref|YP_003968032.1| exodeoxyribonuclease III Xth [Ilyobacter polytropus DSM 2926]
gi|309749023|gb|ADO83684.1| exodeoxyribonuclease III Xth [Ilyobacter polytropus DSM 2926]
Length = 253
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 151/254 (59%), Gaps = 2/254 (0%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA KK A + + +PDI+ LQ+ + E+++ ++ +K +Y F
Sbjct: 1 MKILSWNVNGIRAVEKKGAFQDVFEKLDPDILCLQETKASEEQLTDNIKKIPGYYSFFES 60
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAID 191
KG GV L +K KPL++K + + GR I AKF+ FT I Y PNS K K ++
Sbjct: 61 AVKKGYSGVALYSKTKPLSIKNMGIDIFDDEGRYIEAKFENFTLINCYFPNSQEKGKRLE 120
Query: 192 FRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRE 251
+++ + DY S + + NI++ GD N+ Q IDL NP N K G+ EER +
Sbjct: 121 YKLNFCSDLLDYCNSLVENGENIVLCGDYNIAHQEIDLKNPKSNTKNPGFLPEEREWMSK 180
Query: 252 LLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRS 311
L++G +D FR+LYP+ E YT+WS+R K AR N GWR+DYH V++ + IK I
Sbjct: 181 FLNSGYIDIFRYLYPN-EIKYTWWSYRFK-AREKNIGWRIDYHCVNKDFISTIKKVEILD 238
Query: 312 DVQGSTHCPVVLRL 325
++ GS HCPV++ L
Sbjct: 239 NITGSDHCPVLIEL 252
>gi|384899763|ref|YP_005775143.1| exodeoxyribonuclease [Helicobacter pylori F30]
gi|317179707|dbj|BAJ57495.1| exodeoxyribonuclease [Helicobacter pylori F30]
Length = 250
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 151/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F +++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKV-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|384898191|ref|YP_005773619.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
gi|317013296|gb|ADU83904.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
Length = 250
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +R+ W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRISWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420407656|ref|ZP_14906820.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
gi|393021114|gb|EJB22248.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
Length = 250
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIDEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR N GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKNIGWRIDYFLCSNPLKTLLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|242309877|ref|ZP_04809032.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
gi|239523878|gb|EEQ63744.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
Length = 256
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 162/260 (62%), Gaps = 11/260 (4%)
Query: 70 TKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMF 129
T +K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F +Y +
Sbjct: 3 TIMKLISWNVNGLRACMNK-GFMDFFNTIDADVFCIQESKMQKEQATFDF----PNYEEY 57
Query: 130 WIGSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIK 186
W ++K G GV + +K+KPL+V Y + G+S ++ GR+ITA++ F + VY PNS +
Sbjct: 58 WNSAEKKGYSGVAIFSKKKPLSVAYDM-GISHHDKEGRIITAEYNDFFLVNVYTPNSKRE 116
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
L+ +++RM W+ F +++++ L +I+ GDLNV + IDL NP N + AG+T EER
Sbjct: 117 LERLEYRMEWEDDFRNFLKN-LEVTKPVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEER 175
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
LLD+G D FR+ +P EGAY++WS+ K AR NN GWR+DY L S+ L + +K
Sbjct: 176 EKMSVLLDSGFTDTFRYFHPTLEGAYSWWSYMGK-ARENNTGWRIDYFLCSKALDSKLKS 234
Query: 307 CIIRSDVQGSTHCPVVLRLS 326
I ++ GS HCPV L ++
Sbjct: 235 ASIYPEIFGSDHCPVGLEIN 254
>gi|335356439|ref|ZP_08548309.1| exodeoxyribonuclease [Lactobacillus animalis KCTC 3501]
Length = 253
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 152/255 (59%), Gaps = 11/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA +KKN +E + + D LQ+ + Q +V L Y+ +W
Sbjct: 1 MKFISWNVNGLRAVLKKNF-LEVFTDLDADFFCLQETKLQAGQVD----LDLPDYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK+KPL V G+ G++ +Q GRV+T +++ F + Y PNS KLK
Sbjct: 56 YAQKKGYSGTAIFTKKKPLAVTKGL-GLAEFDQEGRVLTLEYEDFYLVNCYTPNSQDKLK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+DFR+ W+ F D++ + L + +I+ GDLNV IDL NP N K AG++++ER+
Sbjct: 115 RLDFRLQWEAAFSDHL-TNLATKKPVILCGDLNVAHNEIDLKNPKPNQKNAGFSIQERQA 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LL G D FRH+Y D+ GAY++WS+R +AR N GWR+DY + S L +KD
Sbjct: 174 MTALLARGFTDTFRHIYLDKTGAYSWWSYR-FNARARNAGWRIDYFICSNALLPQVKDSQ 232
Query: 309 IRSDVQGSTHCPVVL 323
I ++ GS HCPV+L
Sbjct: 233 ILPEILGSDHCPVML 247
>gi|420420653|ref|ZP_14919737.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
gi|393035452|gb|EJB36496.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
Length = 250
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 151/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMNWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARNKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D GS HCPV L L
Sbjct: 234 YKDTLGSDHCPVGLEL 249
>gi|302783529|ref|XP_002973537.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
gi|300158575|gb|EFJ25197.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
Length = 306
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/267 (41%), Positives = 162/267 (60%), Gaps = 19/267 (7%)
Query: 72 VKVSTWNVNGLRACVKK--------NACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
VKV +WNVNGLRAC+K+ +A E+ D++ LQ+ + QE +V +K L
Sbjct: 38 VKVISWNVNGLRACMKRKNELEEEGSALARLADSEDFDVLCLQETKLQEKDVEAIKQKIL 97
Query: 124 SHY-HMFWIGSDK--GQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITV 178
Y + FW S G G L+++ KPL+V YG+ G+S GRV+TA+F F ++V
Sbjct: 98 GGYSNSFWTCSTSKLGYSGCALISRIKPLSVTYGL-GISQHDGEGRVVTAEFDTFFLVSV 156
Query: 179 YVPNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVK 237
YVPNSG +L+ + +R WD F Y+ EL +I++GDLN + ID+ +PD N +
Sbjct: 157 YVPNSGQRLERLTYRTTEWDPAFSTYLL-ELEKRKPVIVTGDLNCAHEEIDIYDPDGNKR 215
Query: 238 TAGYTVEERRNFR-ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLV 296
+AG+T EER +F+ +D GLVD FR +P G +TYWS+R+ +AR NKGWRLDY LV
Sbjct: 216 SAGFTSEERTSFQTNFIDKGLVDTFRKQHPLAVG-FTYWSYRS-NARPQNKGWRLDYFLV 273
Query: 297 SEQLANNIKDCIIRSDVQGSTHCPVVL 323
S+ L ++ D + + GS HCP+ L
Sbjct: 274 SQGLVCSVADSYVLPQLDGSDHCPIGL 300
>gi|291276452|ref|YP_003516224.1| exodeoxyribonuclease [Helicobacter mustelae 12198]
gi|290963646|emb|CBG39478.1| putative exodeoxyribonuclease [Helicobacter mustelae 12198]
Length = 250
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 160/258 (62%), Gaps = 11/258 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNGLRAC+ K +++ + + DI +Q+ + D+ F YH +W
Sbjct: 1 MRLISWNVNGLRACMNK-GFMDFFRQIDADIFCIQESKMHPDQADFVF----DGYHGYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G GV +L+K++PL V+Y + G+ ++ GRVI A++ F I VY PNS +L+
Sbjct: 56 SAEKKGYSGVVVLSKQEPLCVEYDM-GIEHHDKEGRVICAEYPDFYLINVYTPNSKRELE 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F +++++ L +II GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLEYRMQWEDDFLNFLKN-LERKKPLIICGDLNVAHKEIDLKNPKTNRRNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LL+ G +D FR+ YPD EGAY++WS+ + AR NN GWR+DY L SE L + +
Sbjct: 174 MTTLLENGFIDTFRYFYPDLEGAYSWWSYMGR-ARQNNTGWRIDYFLCSEILQKRLIEAK 232
Query: 309 IRSDVQGSTHCPVVLRLS 326
I S++ GS HCPV L +S
Sbjct: 233 IYSEILGSDHCPVGLVIS 250
>gi|420449595|ref|ZP_14948464.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
gi|393062395|gb|EJB63250.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
Length = 250
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFK----GYFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|283769444|ref|ZP_06342342.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
gi|283103969|gb|EFC05354.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
Length = 251
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/256 (39%), Positives = 152/256 (59%), Gaps = 5/256 (1%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRA +KK E+ + D+ ALQ+ + Q D++ +Y
Sbjct: 1 MKFVSWNVNGLRAVMKK-GFKEFFERVDADVFALQETKMQADQITSEMEFE-GYYRYMNS 58
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAID 191
KG G + KE+P++V+Y I G ++ GRVIT ++ + F+T YVPNS L +
Sbjct: 59 AERKGYSGTMVYCKEEPISVQYDIEGDTSMEGRVITLEYPNYYFVTAYVPNSKEGLARLG 118
Query: 192 FRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRE 251
FRM W+ D++ + L+ +I +GDLNV + IDL NP N K G++ EER+ E
Sbjct: 119 FRMEWEDRLRDHL-NRLKEVKPVIYTGDLNVAHEEIDLKNPQSNHKNPGFSDEERQKMTE 177
Query: 252 LLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRS 311
LL G +D+FR+LYP +E Y++WS+R +AR N GWR+DY +VSE L +K+ +I
Sbjct: 178 LLADGYIDSFRYLYP-KEVKYSWWSYR-AAARERNVGWRIDYFIVSENLKEKVKNALIDD 235
Query: 312 DVQGSTHCPVVLRLSL 327
+V+GS HCP+ L +
Sbjct: 236 EVKGSDHCPIELEMDF 251
>gi|421712459|ref|ZP_16151793.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
gi|407209732|gb|EKE79620.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
Length = 250
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVITFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|228909564|ref|ZP_04073387.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
gi|228849853|gb|EEM94684.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
Length = 244
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 149/239 (62%), Gaps = 10/239 (4%)
Query: 92 VEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSDKGQGGVGLLTKEKPLT 150
+EY+ E + DI LQ+I+ QE ++ +L Y+ +W KG G + +K++PL+
Sbjct: 13 LEYLEESSADIFCLQEIKLQEGQID----LNLEGYYTYWNYAVKKGYSGTAIFSKKEPLS 68
Query: 151 VKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSEL 208
V YG+ G+ +Q GR+IT +F+ F IT+Y PNS L+ +D+RM W+ F YI+ L
Sbjct: 69 VTYGL-GIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYIKR-L 126
Query: 209 RSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDE 268
+I GDLNV + IDL NP N K G++ EER F +L+ G VD +R+LYP++
Sbjct: 127 DEKKTVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFVDTYRYLYPNQ 186
Query: 269 EGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
EGAY++WS+R AR N GWRLDY +VSE++ + I + I S+V GS HCPV L ++
Sbjct: 187 EGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDQITEVKINSEVMGSDHCPVELYINF 244
>gi|288803025|ref|ZP_06408461.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
gi|288334542|gb|EFC72981.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
Length = 249
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 151/256 (58%), Gaps = 10/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRACV K ++ + + D LQ+ + Q ++ SF Y +W
Sbjct: 1 MKFISWNVNGLRACVGKEFEQQF-KDLDADFFCLQETKMQAGQLDISFLG----YESYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+DK G G + TK KPL+V YGI + GRVIT + F +TVY PNS L+
Sbjct: 56 YADKKGYSGTAIFTKHKPLSVTYGINIDEHDHEGRVITLEMDDFYLVTVYTPNSQDGLRR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y+ +L +I+ GD+NV Q IDL NP N K AG+T EER
Sbjct: 116 LDYRMKWEDDFQAYLH-KLDEKKPVIVCGDMNVAHQEIDLKNPKTNRKNAGFTDEEREKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL G +D FR LYP E+ Y++WS+R + AR N GWR+DY L+SE+L + ++D I
Sbjct: 175 TQLLSNGFIDTFRTLYP-EQVTYSWWSYRFR-AREKNTGWRIDYFLISERLKDRLEDAKI 232
Query: 310 RSDVQGSTHCPVVLRL 325
+++ GS HCPV + L
Sbjct: 233 HTEIMGSDHCPVEIIL 248
>gi|261408787|ref|YP_003245028.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
gi|261285250|gb|ACX67221.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
Length = 250
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/255 (40%), Positives = 144/255 (56%), Gaps = 7/255 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K ++Y E + DI +Q+ + Q ++ Y +W
Sbjct: 1 MKLVSWNVNGLRACVTK-GFMDYFNEADADIFCVQETKLQAGQIELDLG---PEYQQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + T+ PL+V+YG+ S GRVIT +F+ F + VY PN+ L +
Sbjct: 57 YAEKKGYSGTAVFTRIAPLSVRYGLEEDSEPEGRVITLEFEGFYLVNVYTPNAKRDLSRL 116
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+R+ W++ F Y+ +L +I+ GDLNV Q IDL N N +G+T+EER
Sbjct: 117 DYRLEWEERFRTYLL-QLDERKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMT 175
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+LL G +D+FRH YPD Y++WS+ K R N GWR+DY L S +LA +KD I
Sbjct: 176 DLLAAGFIDSFRHFYPDRTDVYSWWSYMAK-VRERNIGWRIDYFLTSARLAEKLKDAEID 234
Query: 311 SDVQGSTHCPVVLRL 325
V GS HCPV L L
Sbjct: 235 CHVLGSDHCPVSLTL 249
>gi|300767631|ref|ZP_07077541.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300494616|gb|EFK29774.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 265
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 151/261 (57%), Gaps = 11/261 (4%)
Query: 70 TKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMF 129
T VK+ +WNVNGLRA VK + + E + D +Q+ + Q ++ F Y+ +
Sbjct: 10 THVKLISWNVNGLRAAVKHGFVMTFN-ELDADFFCVQETKLQAGQIELDFPG----YYQY 64
Query: 130 W-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIK 186
W KG G + TK +PL V YGI GV + GRVIT ++ + +T Y PNSG +
Sbjct: 65 WNYAERKGYSGTAIFTKHEPLNVTYGI-GVPEFDDEGRVITLEYADYYVLTCYTPNSGGE 123
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
LK +D+R W+ F YI S L +N +I GDLNV ++IDL N N +AG+T EER
Sbjct: 124 LKRLDYRQQWEDAFLTYINS-LSANKPLIFCGDLNVAHENIDLKNWRSNHHSAGFTDEER 182
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
F LL G D FRH YPD+ Y++WS+R AR NN GWR+DY + S+QL + + +
Sbjct: 183 TKFDRLLAAGYTDTFRHFYPDQTDIYSWWSYRGH-ARDNNSGWRIDYFITSQQLDSQLLN 241
Query: 307 CIIRSDVQGSTHCPVVLRLSL 327
I +++ GS HCPV L + L
Sbjct: 242 ARIHNEIFGSDHCPVELDIIL 262
>gi|329930518|ref|ZP_08284058.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
gi|328934896|gb|EGG31386.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
Length = 250
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/255 (40%), Positives = 144/255 (56%), Gaps = 7/255 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K ++Y E + DI +Q+ + Q ++ Y +W
Sbjct: 1 MKLVSWNVNGLRACVTK-GFMDYFNEADADIFCVQETKLQAGQIELDLG---PEYQQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + T+ PL+V+YG+ S GRVIT +F+ F + VY PN+ L +
Sbjct: 57 YAEKKGYSGTAVFTRIAPLSVRYGLEEDSEPEGRVITLEFEDFYLVNVYTPNAKRDLSRL 116
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+R+ W++ F Y+ +L +I+ GDLNV Q IDL N N +G+T+EER
Sbjct: 117 DYRLEWEERFRTYLL-QLDERKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMT 175
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+LL G +D+FRH YPD Y++WS+ K R N GWR+DY L S +LA +KD I
Sbjct: 176 DLLAAGFIDSFRHFYPDRTDVYSWWSYMAK-VRERNIGWRIDYFLTSARLAEKLKDAEID 234
Query: 311 SDVQGSTHCPVVLRL 325
V GS HCPV L L
Sbjct: 235 CHVLGSDHCPVSLTL 249
>gi|420434804|ref|ZP_14933804.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|420503423|ref|ZP_15001957.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
gi|420505338|ref|ZP_15003854.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393052572|gb|EJB53518.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|393116870|gb|EJC17374.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393149519|gb|EJC49829.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
Length = 250
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|297583616|ref|YP_003699396.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
gi|297142073|gb|ADH98830.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
Length = 254
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 152/261 (58%), Gaps = 14/261 (5%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC++K + + E D+ A+Q+I+ QE +V L Y +W
Sbjct: 1 MKLISWNVNGLRACIRK-GFLSFFEEAGADLFAVQEIKLQEGQVD----LDLQGYRQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR----GRVITAKFKRFTFITVYVPNSGIK 186
KG G + TK +PL V GV N+R GR++T +F F + VY PNS
Sbjct: 56 YAEKKGYSGTAVFTKVEPLRVFRN--GVGNERQQSEGRILTLEFASFFLVNVYTPNSQRD 113
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
L + R+ W+ FY Y+Q EL + +I+ GD+NV + IDL N N +G+T EER
Sbjct: 114 LARLHERLQWEDAFYAYLQ-ELENEKPVIVCGDMNVAHEEIDLRNAKSNRGNSGFTTEER 172
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
L L+D++R+ YPD+EGAYT+WS+ K+ R N GWR+DY LVS++L + + D
Sbjct: 173 AKMTRLQSEWLIDSYRYYYPDQEGAYTWWSYM-KTVRERNIGWRIDYFLVSDKLKSAMND 231
Query: 307 CIIRSDVQGSTHCPVVLRLSL 327
I SDV GS HCP+ L ++
Sbjct: 232 VSIYSDVLGSDHCPIGLTMAF 252
>gi|420528800|ref|ZP_15027190.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|420528961|ref|ZP_15027349.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
gi|393132399|gb|EJC32820.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|393138075|gb|EJC38457.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
Length = 250
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNIFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420488041|ref|ZP_14986644.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|420521916|ref|ZP_15020345.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
gi|393101431|gb|EJC02003.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|393126486|gb|EJC26937.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
Length = 250
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 151/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL V YGI + + GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLNVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|150399093|ref|YP_001322860.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
gi|150011796|gb|ABR54248.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
Length = 257
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 160/255 (62%), Gaps = 10/255 (3%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
T +K+ +WNVNG+RAC+K N ++++ +NP+I+ +Q+ + Q+ +V + L+ Y
Sbjct: 6 TYIMKMISWNVNGIRACLK-NGFMDFLNSKNPEIICIQETKVQKGQV----QLGLNGYFE 60
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGV-SNQRGRVITAKFKRFTFITVYVPNSGIK 186
+W KG G + TK +P +VKYGI S++ GRVIT +F+ + + VY PNS
Sbjct: 61 YWNYAEKKGYSGTAIFTKIEPKSVKYGITNYKSDKEGRVITLEFEEYFLVNVYTPNSQRG 120
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
LK ++ R WD+ F +++++ L +I GDLNV + IDL NP +N+K AG+T EER
Sbjct: 121 LKRLECRQKWDKDFLNHLKT-LEQKKPVIFCGDLNVAHKEIDLKNPKQNIKNAGFTKEER 179
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
F L+++G +D FR L + E YT+WS+R +AR N GWR+DY +S++L +KD
Sbjct: 180 NGFDNLINSGFLDTFRELNNEPEN-YTWWSYR-FNAREKNIGWRIDYFCISKKLRERLKD 237
Query: 307 CIIRSDVQGSTHCPV 321
I S+V GS HCPV
Sbjct: 238 AFIMSEVLGSDHCPV 252
>gi|291522762|emb|CBK81055.1| exodeoxyribonuclease III [Coprococcus catus GD/7]
Length = 258
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 148/257 (57%), Gaps = 9/257 (3%)
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
KVK+ +WNVNGLRA V K V+ E + DI LQ+ + Q ++ L Y +W
Sbjct: 7 KVKLISWNVNGLRAVVGK-GFVDIFNELDADIFCLQETKLQAGQI----ELDLPGYEQYW 61
Query: 131 -IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + T+ KPL+V+YG+ + GRVIT ++ F + VY PNS L
Sbjct: 62 NYAERKGYSGTAVFTRIKPLSVRYGMDIAEHDTEGRVITLEYDSFYLVNVYTPNSKDGLA 121
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F +Y+++ L +++ GDLNV + IDL NP N K AG++ EER
Sbjct: 122 RLPYRMKWEDDFRNYLKT-LEQTKPVVMCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 180
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL G +D FR+ YPD+ G Y++WS+R +AR NN GWR+DY +VS+ L +
Sbjct: 181 MTELLAAGFIDTFRYFYPDKTGEYSWWSYR-FNARKNNAGWRIDYFIVSDALKERLISAS 239
Query: 309 IRSDVQGSTHCPVVLRL 325
I ++ GS HCPV L L
Sbjct: 240 IHQEIFGSDHCPVELEL 256
>gi|269798609|ref|YP_003312509.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282849823|ref|ZP_06259207.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294792738|ref|ZP_06757885.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
gi|269095238|gb|ACZ25229.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282580760|gb|EFB86159.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294456637|gb|EFG25000.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
Length = 251
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 150/259 (57%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA V K +E E + DI LQ+ + Q D++ L Y +W
Sbjct: 1 MKLISWNVNGLRAAVTK-GFMESFNELDADIFCLQETKLQPDQIS----LELPGYEQYWN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + T+ KPL+V GI G+ +Q GRVITA++ F + Y PNS +L
Sbjct: 56 SAVKKGYSGTAVFTRIKPLSVTNGI-GIEEHDQEGRVITAEYDNFYLVCCYTPNSQRELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F +Y+ EL +I+ GDLNV Q IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTWEDAFRNYLL-ELDKKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL G D FRHLYPD Y++WS+ K AR N GWR+DY + S++L + I++
Sbjct: 174 MTELLGAGFTDTFRHLYPDAIEQYSWWSYMGK-ARERNTGWRIDYFITSKRLDDKIQEAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + GS HCPV L + L
Sbjct: 233 IHQQIFGSDHCPVELVIDL 251
>gi|410460164|ref|ZP_11313847.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
gi|409927394|gb|EKN64530.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
Length = 251
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/257 (40%), Positives = 156/257 (60%), Gaps = 9/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV+K ++Y E DI +Q+ + QE ++ +L +Y+ +W
Sbjct: 1 MKLISWNVNGLRACVQK-GFLDYFHEMGADIFCVQETKLQEGQID----LNLENYNQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGI-PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG G + TK KP++V YG+ + + GR IT +F F + VY PNS L
Sbjct: 56 YAAKKGYSGTAVFTKIKPISVSYGLGEHMEDHEGRAITLEFPSFYLVNVYTPNSQRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +R+ W+ + +Y+ EL +I+ GDLNV Q IDL N N +G+T EER
Sbjct: 116 LSYRLEWEDNIRNYLL-ELDKVKPVILCGDLNVAHQEIDLKNYKTNRGNSGFTDEEREKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD+G VD+FR+LYPD+ Y++WS+ NK R N GWR+DY ++S+ L+++I D I
Sbjct: 175 TRLLDSGFVDSFRYLYPDKGDVYSWWSYMNK-VRERNIGWRIDYFILSKGLSSSIIDSQI 233
Query: 310 RSDVQGSTHCPVVLRLS 326
+++ GS HCPV L L+
Sbjct: 234 HTEIMGSDHCPVCLELN 250
>gi|340624333|ref|YP_004742786.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
gi|339904601|gb|AEK20043.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
Length = 249
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 150/252 (59%), Gaps = 10/252 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RAC+K N ++++ E+PDIM +Q+ + Q +V + L Y +W
Sbjct: 1 MKMLSWNVNGIRACLK-NGFMDFLERESPDIMCIQETKVQSGQV----QLGLDGYFQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KP V YGI + GRVIT KF + + VY PNS L
Sbjct: 56 YAERKGYSGTAIFTKIKPNEVSYGIGNNEHDGEGRVITLKFDEYYLLNVYTPNSQRGLTR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++R WDQ F +Y+++ L + +I GDLNV + IDL NP NVK AG+T EER F
Sbjct: 116 LEYRQKWDQDFLNYVKT-LENKKPVIFCGDLNVAHKEIDLKNPKTNVKNAGFTPEERNGF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
++++G +D FR + E Y++WS+R +AR N GWR+DY +S+ L N+KD I
Sbjct: 175 DNIVNSGFLDTFRE-FNKEPDNYSWWSYR-FNARAKNIGWRIDYFCISKSLKGNLKDAFI 232
Query: 310 RSDVQGSTHCPV 321
+V GS HCPV
Sbjct: 233 MPEVMGSDHCPV 244
>gi|313894410|ref|ZP_07827975.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441234|gb|EFR59661.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
Length = 251
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 149/259 (57%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA V K +E E + DI LQ+ + Q PE L Y +W
Sbjct: 1 MKLISWNVNGLRAAVTK-GFMESFNELDADIFCLQETKLQ----PEQISLELPGYEQYWN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + T+ KPL+V GI G+ +Q GRVITA++ F + Y PNS +L
Sbjct: 56 SAVKKGYSGTAVFTRIKPLSVTNGI-GIEEHDQEGRVITAEYDNFYLVCCYTPNSQRELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F +Y+ EL +I+ GDLNV Q IDL NP N K AG++ EER
Sbjct: 115 RLEYRMAWEDAFRNYLL-ELDKKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL G D FRHLYPD Y++WS+ K AR N GWR+DY + S++L + I++
Sbjct: 174 MTELLGAGFTDTFRHLYPDAIEQYSWWSYMGK-ARERNTGWRIDYFITSKRLDDKIQEAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + GS HCPV L + L
Sbjct: 233 IHQQIFGSDHCPVELDIDL 251
>gi|420419486|ref|ZP_14918576.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
gi|393031392|gb|EJB32464.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
Length = 250
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420429441|ref|ZP_14928474.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
gi|393044771|gb|EJB45763.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
Length = 250
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 150/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLNVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F +++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKV-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|420444585|ref|ZP_14943505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
gi|393058222|gb|EJB59115.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
Length = 250
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
++ GS HCPV L L
Sbjct: 234 YKNILGSDHCPVGLEL 249
>gi|268608445|ref|ZP_06142172.1| exodeoxyribonuclease [Ruminococcus flavefaciens FD-1]
Length = 248
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/255 (42%), Positives = 152/255 (59%), Gaps = 13/255 (5%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNG RAC+ K ++ E + DI +Q+ + Q D+ PE + K ++H
Sbjct: 1 MKLISWNVNGFRACLTK-GFGDFFAEADADIFCIQETKMQPDQADFSPEGYHK---YFHS 56
Query: 129 FWIGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK++PL+V +GI G GRVIT +++ F F+ YVPN+ +LK
Sbjct: 57 ---AIKKGYSGTAVYTKKEPLSVTFGINGEHTDEGRVITCEYEDFYFVGCYVPNAQNELK 113
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
ID+RM ++ Y+ SEL +I GDLNV IDL NP NV AG++ EER
Sbjct: 114 RIDYRMEFEDAMRGYL-SELDKKKPVIYCGDLNVAHNEIDLKNPKSNVGNAGFSDEERGK 172
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL G D++R LYP E+ Y++WS+R K AR N GWR+DY +VS++ +KD
Sbjct: 173 FTELLAAGFSDSYRSLYP-EKIEYSWWSYRFK-AREKNIGWRIDYFVVSDRFMPRVKDSQ 230
Query: 309 IRSDVQGSTHCPVVL 323
I +DV GS HCPV L
Sbjct: 231 ILTDVTGSDHCPVQL 245
>gi|381180194|ref|ZP_09889037.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
gi|380767904|gb|EIC01900.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
Length = 253
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/260 (40%), Positives = 150/260 (57%), Gaps = 11/260 (4%)
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
K K +WNVNGLRA + KN +E D LQ+ + Q ++ L Y +W
Sbjct: 2 KYKFISWNVNGLRAVMGKN-FMEAFDSLGADFFCLQETKLQAGQI----EMDLPGYKEYW 56
Query: 131 -IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKL 187
KG G + TK +PL+V YGI G+ + GRVIT ++ F +TVY PNS +L
Sbjct: 57 NYAQKKGYSGTAIFTKHEPLSVSYGI-GIEQHDTEGRVITLEYADFFLVTVYTPNSQNEL 115
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
K +D+RM W+ F +++ S L++ +I+ GD+NV + ID+ NP N + AG+T EER
Sbjct: 116 KRLDYRMAWEDDFRNFLVS-LKAKKPVIVCGDMNVAHEEIDIKNPSANRRNAGFTDEERA 174
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
ELL +G +D FR L P+ + AY++WS+R AR N GWR+DY LVS+ + I D
Sbjct: 175 KMTELLASGFIDTFRTLNPELKDAYSWWSYRFH-ARERNAGWRIDYFLVSDDIKPRISDA 233
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV L L
Sbjct: 234 KIHADILGSDHCPVELELEF 253
>gi|150402181|ref|YP_001329475.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
gi|150033211|gb|ABR65324.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
Length = 249
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 152/252 (60%), Gaps = 10/252 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RAC+K N ++++ E+PDIM +Q+ + Q +V + L Y +W
Sbjct: 1 MKMISWNVNGIRACLK-NGFMDFLERESPDIMCIQETKVQSGQV----QLGLDGYFQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KP V GI + GRV+T +F ++ I VY PNS L
Sbjct: 56 YAEKKGYSGTAIFTKIKPNNVILGIKNTEHDGEGRVLTLEFDKYYLINVYTPNSQRGLTR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++R WDQ F +YI++ L + +I GDLNV + IDL NP NVK AG+T EER F
Sbjct: 116 LEYRQKWDQDFLNYIKT-LENEKPVIFCGDLNVAHKEIDLKNPKNNVKNAGFTPEERIGF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
++D+G +D FR + E Y++WS+R +AR N GWR+DY +S+ L +N+KD I
Sbjct: 175 DNIVDSGFIDTFRE-FNKEPDNYSWWSYR-FNARSKNIGWRIDYFCISKILRDNLKDAFI 232
Query: 310 RSDVQGSTHCPV 321
S+V GS HCPV
Sbjct: 233 MSEVMGSDHCPV 244
>gi|217031877|ref|ZP_03437380.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298735503|ref|YP_003728024.1| exodeoxyribonuclease III [Helicobacter pylori B8]
gi|216946529|gb|EEC25131.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298354688|emb|CBI65560.1| exodeoxyribonuclease III [Helicobacter pylori B8]
Length = 250
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F + Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEF----NGYFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|431586490|ref|ZP_19521005.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1861]
gi|430593668|gb|ELB31654.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1861]
Length = 250
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/256 (39%), Positives = 147/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V KN +E E + D LQ+ + Q ++ L Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVNKN-FLEVFHELDADFFCLQETKLQAGQID----LDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + K+ L YG+ + + GR+IT ++ F +T Y PNS +LK
Sbjct: 56 YAERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R+ W++ FY+Y+++ L+ +I+ GDLNV Q IDL N K AG+T EER
Sbjct: 116 LDYRLEWEEAFYNYLEN-LKKQKPVIVCGDLNVAHQKIDLKKWKTNQKNAGFTPEERAAL 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G +D FR+ YP +EG Y++W++R S R NN GWR+DY L S+ L + D I
Sbjct: 175 SRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNS-RKNNAGWRIDYFLTSKDLEPRLADAKI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 HTDIMGSDHCPVELDL 249
>gi|327313318|ref|YP_004328755.1| exodeoxyribonuclease III [Prevotella denticola F0289]
gi|326944960|gb|AEA20845.1| exodeoxyribonuclease III [Prevotella denticola F0289]
Length = 249
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 152/257 (59%), Gaps = 12/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRACV K ++ + + D LQ+ + Q ++ SF Y +W
Sbjct: 1 MKFISWNVNGLRACVGKEFEQQF-KDLDADFFCLQETKMQAGQLDLSF----PGYESYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G G + TK KPL V YGI G+ + GRVIT + F +TVY PNS L+
Sbjct: 56 YADKKGYSGTAIFTKHKPLNVTYGI-GIDEHDHEGRVITLEMDDFYLVTVYTPNSQDGLR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+ +L +++ GD+NV Q IDL NP N K AG+T EER
Sbjct: 115 RLDYRMKWEDDFQAYLH-KLDEKKPVVVCGDMNVAHQEIDLKNPKTNRKNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LL G +D FR LYP E+ Y++WS+R + AR N GWR+DY L+SE+L + ++D
Sbjct: 174 MTQLLGNGFIDTFRTLYP-EQVTYSWWSYRFR-ARERNTGWRIDYFLISERLRDRLEDAK 231
Query: 309 IRSDVQGSTHCPVVLRL 325
I +++ GS HCPV + L
Sbjct: 232 IHTEIMGSDHCPVEVDL 248
>gi|354580157|ref|ZP_08999062.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
gi|353202588|gb|EHB68037.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
Length = 255
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/256 (39%), Positives = 148/256 (57%), Gaps = 7/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K ++Y + + DI +Q+ + QE ++ S Y +W
Sbjct: 1 MKLVSWNVNGLRACVNK-GFLDYFKQTDADIFCVQETKLQEGQIELELG---SDYRQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + T+ +PL+V+YGI GR+IT +F+ F + VY PN+ L +
Sbjct: 57 YAQKKGYSGTAVFTRLEPLSVRYGIEEDEEPEGRIITLEFQHFYLVNVYTPNAKRDLSRL 116
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+R+ W++ F Y+Q +L + +II GDLNV Q IDL N N+ +G+T+EER
Sbjct: 117 SYRLEWEERFRRYLQ-QLDAVKPVIICGDLNVAHQEIDLKNAKSNLGNSGFTLEERGKMT 175
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+LL G +D+FR YPD Y++WS+ K R N GWR+DY LVS +L+ + D I
Sbjct: 176 DLLAAGFIDSFRFFYPDRTDVYSWWSYMAK-VRERNIGWRIDYFLVSARLSEKLVDAEID 234
Query: 311 SDVQGSTHCPVVLRLS 326
V GS HCPV L +S
Sbjct: 235 CHVLGSDHCPVRLTVS 250
>gi|297587792|ref|ZP_06946436.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302380031|ref|ZP_07268510.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
gi|297574481|gb|EFH93201.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302312257|gb|EFK94259.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
Length = 253
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 155/259 (59%), Gaps = 9/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG RA KK E N DI LQ+I+ +E+++ + + YH +
Sbjct: 1 MKLISWNVNGYRAVWKK-GFKEAFDSLNADIFCLQEIKMKENQMTDEME--IEGYHRYSY 57
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G G + TK +P+ V +GI G+ + GRVIT +++ F + VY PNS KL+
Sbjct: 58 SANKAGYSGTLVYTKTEPIGVSFGI-GIDEHDTEGRVITCEYEDFFLVNVYTPNSKQKLE 116
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM+W+ F++Y+ LR +I+ GDLNV IDL NP N ++AG+T EER
Sbjct: 117 RLDYRMVWEDEFHNYLNI-LRDRKPVIVCGDLNVAHNEIDLKNPQSNRRSAGFTDEERNK 175
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LL+ G +D FR+ YPD+ Y+YWS+ K AR N GWR+DY +VS+ L +N+ D
Sbjct: 176 MSLLLNDGYIDTFRYFYPDKTDEYSYWSYFAK-ARERNAGWRIDYFIVSDDLKDNLVDAK 234
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + GS HCPV L ++
Sbjct: 235 IHQSIMGSDHCPVELEINF 253
>gi|420427852|ref|ZP_14926893.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
gi|393040038|gb|EJB41059.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
Length = 248
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 149/252 (59%), Gaps = 9/252 (3%)
Query: 76 TWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSD 134
+WNVNGLRAC+ K +++ + DI +Q+ + Q+++ F+ Y FW
Sbjct: 3 SWNVNGLRACMTK-GFMDFFNSVDADIFCIQESKMQQEQNTFEFKG----YFDFWNCAIK 57
Query: 135 KGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFR 193
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L + +R
Sbjct: 58 KGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYR 117
Query: 194 MIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELL 253
M W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F ELL
Sbjct: 118 MSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELL 176
Query: 254 DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDV 313
+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I D+
Sbjct: 177 NAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDI 235
Query: 314 QGSTHCPVVLRL 325
GS HCPV L L
Sbjct: 236 LGSDHCPVGLEL 247
>gi|430751698|ref|YP_007214606.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
gi|430735663|gb|AGA59608.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
Length = 258
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/257 (39%), Positives = 150/257 (58%), Gaps = 15/257 (5%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQED----EVPESFRKSLSHYH 127
+K+ +WNVNGLR+CV K ++Y + DI+ +Q+ + QE E+PE +R+
Sbjct: 1 MKLISWNVNGLRSCVGK-GFLDYFRRADADIVCVQETKLQEGQLELELPEGYRQ------ 53
Query: 128 MFW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIK 186
+W KG G + T+ +PL+V+ G+ + GRV+T +F F + VY PN+
Sbjct: 54 -YWNCAEKKGYSGTAVFTRFEPLSVRKGLSDGDDPEGRVLTLEFPAFFLVNVYTPNARRD 112
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
L +++R+ W++ F Y++ EL + +++ GDLNV + IDL N N AG+T EER
Sbjct: 113 LSRLEYRIAWEERFRAYLK-ELDARKPVVVCGDLNVAHREIDLKNAKFNRGNAGFTDEER 171
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
LL+ G D FRH YPD AYT+WSF K R N GWR+DY LVS +LA ++D
Sbjct: 172 EAMTRLLEAGFTDTFRHFYPDRTDAYTWWSFMPK-VRERNIGWRIDYFLVSARLAPYLED 230
Query: 307 CIIRSDVQGSTHCPVVL 323
+I S + GS HCPV L
Sbjct: 231 ALIDSGIMGSDHCPVGL 247
>gi|294794491|ref|ZP_06759627.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
gi|294454821|gb|EFG23194.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
Length = 251
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 150/259 (57%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA V K +E E + DI LQ+ + Q D++ L Y +W
Sbjct: 1 MKLISWNVNGLRAAVTK-GFMESFNELDADIFCLQETKLQPDQIS----LELPGYEQYWN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + T+ KPL+V GI G+ +Q GRVITA++ F + Y PNS +L
Sbjct: 56 SAVKKGYSGTAVFTRIKPLSVTNGI-GIEEHDQEGRVITAEYDNFYLVCCYTPNSQRELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F +Y+ EL +I+ GDLNV Q IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTWEDAFRNYLL-ELDKKKPVILCGDLNVAHQEIDLKNPKMNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL G D FRHLYPD Y++WS+ K AR N GWR+DY + S++L + I++
Sbjct: 174 MTELLGAGFTDTFRHLYPDAIEQYSWWSYMGK-ARERNTGWRIDYFITSKRLDDKIQEAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + GS HCPV L + L
Sbjct: 233 IHQQIFGSDHCPVELVIDL 251
>gi|420513485|ref|ZP_15011963.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
gi|393155902|gb|EJC56173.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
Length = 250
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/256 (39%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI + + GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ +ER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDKEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|379726888|ref|YP_005319073.1| exodeoxyribonuclease III [Melissococcus plutonius DAT561]
gi|376317791|dbj|BAL61578.1| exodeoxyribonuclease III [Melissococcus plutonius DAT561]
Length = 254
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 153/258 (59%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKKN ++ E + D +Q+ + Q+ ++ L YH +W
Sbjct: 1 MKCISWNVNGLRAIVKKNF-IDVFNELDADFFCVQETKLQDGQI----DLELPGYHQYWD 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV + K+ V YG+ +Q GR++T ++ F + Y PNS +LK
Sbjct: 56 YAIKKGYSGVAVFAKKAAQKVYYGLNMEEHDQEGRLLTLEYPNFYLVNCYTPNSQPELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F DY+ +L+S +I+ GDLNV Q IDL N N +AG++ EER
Sbjct: 116 LAYRMTWENAFRDYL-IKLKSKKPVILCGDLNVAHQPIDLKNWRTNQHSAGFSPEEREKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LLD G +D +R+ YPD+EG Y++WS+R +AR NN GWR+DY +VS+ L +K+ I
Sbjct: 175 TQLLDNGFIDTYRYFYPDKEGVYSWWSYR-FNARKNNAGWRIDYFIVSDNLKPTLKEATI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
+++ GS HCPV + L L
Sbjct: 234 YTEITGSDHCPVGVELDL 251
>gi|302345223|ref|YP_003813576.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
gi|302150206|gb|ADK96468.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
Length = 249
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 152/256 (59%), Gaps = 10/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRACV K ++ + + D LQ+ + Q ++ SF Y +W
Sbjct: 1 MKFISWNVNGLRACVGKEFEQQF-KDLDADFFCLQETKMQAGQLDLSF----PGYESYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+DK G G + TK KPL+V YGI + GRVIT + + F +TVY PNS L+
Sbjct: 56 YADKKGYSGTAIYTKHKPLSVTYGIDIDEHDHEGRVITLEMEDFYLVTVYTPNSQDGLRR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F Y+ +L +I+ GD+NV Q IDL NP N K AG+T EER
Sbjct: 116 LEYRMKWEDDFQAYLH-KLDEKKPVIVCGDMNVAHQEIDLKNPKTNHKNAGFTDEEREKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL G +D FR LYP E+ Y++WS+R + AR N GWR+DY L+SE+L + ++D I
Sbjct: 175 TQLLSNGFIDTFRTLYP-EQVTYSWWSYRFR-AREKNTGWRIDYFLISERLKDRLEDAKI 232
Query: 310 RSDVQGSTHCPVVLRL 325
+++ GS HCPV + L
Sbjct: 233 HTEIMGSDHCPVEIIL 248
>gi|260592674|ref|ZP_05858132.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
gi|260535444|gb|EEX18061.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
Length = 249
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 154/256 (60%), Gaps = 10/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRACV K+ ++ + N D LQ+ + Q ++ SF Y +W
Sbjct: 1 MKLISWNVNGLRACVGKDFEQQF-KDFNADFFCLQETKMQAGQLDLSF----PGYESYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+DK G G + T+ KPL+V YGI + GRVIT + F +TVY PNS +L+
Sbjct: 56 YADKKGYSGTAIFTRHKPLSVTYGIDIDEHDHEGRVITLEMDDFYLVTVYTPNSQDELRR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F Y+ +L +I+ GD+NV Q IDL NP N + AG+T EER+
Sbjct: 116 LEYRMKWEDDFQSYLH-KLDEIKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEERQKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL G +D FR LYP E+ Y++WS+R + AR N GWR+DY L+SE+L + + D I
Sbjct: 175 TQLLSNGFIDTFRTLYP-EQVTYSWWSYRFR-AREKNTGWRIDYFLISERLRDRLVDAKI 232
Query: 310 RSDVQGSTHCPVVLRL 325
+++ GS HCP+ + L
Sbjct: 233 HTEIMGSDHCPIEIDL 248
>gi|384888368|ref|YP_005762879.1| exodeoxyribonuclease [Helicobacter pylori 52]
gi|261840198|gb|ACX99963.1| exodeoxyribonuclease [Helicobacter pylori 52]
Length = 250
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNIFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLSVSYGINIDEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFRKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|319652957|ref|ZP_08007062.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
gi|317395306|gb|EFV76039.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
Length = 251
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 151/258 (58%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACVKK ++Y E + DI +Q+ + QE ++ L YH +W
Sbjct: 1 MKLVSWNVNGIRACVKK-GFMDYFKEVDADIFCIQESKLQEGQI----ELILEGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PL+V+YG+ + GR++T +++ F + VY PNS L
Sbjct: 56 YAIKKGYSGTAVFTKKEPLSVRYGLGDNETEPEGRILTLEYEGFYLVNVYTPNSQRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +R+ W++ +Y+ L +I+ GDLNV IDL N N +G+T EER
Sbjct: 116 LPYRLEWEERIREYLLG-LDQIKPVIMCGDLNVAHFEIDLKNAKSNRGNSGFTDEERGKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL +G VDAFR+ YP+ EGAYT+WS+ K R N GWR+DY +VSE+L I D I
Sbjct: 175 TRLLGSGFVDAFRYKYPEAEGAYTWWSYMAK-VRERNIGWRIDYFIVSEKLKERILDSQI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
D+ GS HCPV L L +
Sbjct: 234 HCDIMGSDHCPVALELEI 251
>gi|313680366|ref|YP_004058105.1| exodeoxyribonuclease III xth [Oceanithermus profundus DSM 14977]
gi|313153081|gb|ADR36932.1| exodeoxyribonuclease III Xth [Oceanithermus profundus DSM 14977]
Length = 252
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 154/258 (59%), Gaps = 8/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+++WNVNGLRA +KK + + + D++ LQ++R +E P + L Y +W
Sbjct: 1 MKLASWNVNGLRAALKKGFW-DVVRGLDADVLGLQEVRAEE---PPELPEGLGGYRWYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
G KG GV +L + PL V YGI ++ GRVIT +++R+ + Y PN+G L
Sbjct: 57 PGDRKGYAGVAVLVRVPPLDVTYGIGHDEFDEEGRVITLEYERYYVVNAYFPNAGRGLPR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +++ +DQ +Y++ LR+ +++ GDLNV + ID+A P +N K+AG+T EER
Sbjct: 117 LGYKLAFDQAIENYLEG-LRARKGVVLMGDLNVAHREIDIARPKQNQKSAGFTPEERAWI 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G +D FRHL+PD GAYT+W++R +AR N GWR+DY L+SE L ++ D I
Sbjct: 176 DAFLKKGWIDTFRHLHPDATGAYTWWTYRF-NARAKNIGWRIDYILISEDLLPHLMDAYI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
D S H PVV L +
Sbjct: 235 YYDAYASDHVPVVAVLDV 252
>gi|159906029|ref|YP_001549691.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
gi|159887522|gb|ABX02459.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
Length = 249
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 150/252 (59%), Gaps = 10/252 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RAC+K N + ++ E+PDIM +Q+ + Q +V + L Y +W
Sbjct: 1 MKMISWNVNGIRACLK-NGFMNFLERESPDIMCIQETKVQSGQV----QLGLDGYFQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KP V YGI + GRVIT KF + + VY PNS L
Sbjct: 56 YAERKGYSGTAVFTKIKPNEVIYGIGNNEHDGEGRVITLKFDEYYLVNVYTPNSQRGLTR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++R WDQ F +Y+++ L + +I GDLNV + +DL NP NVK AG+T EER+ F
Sbjct: 116 LEYRQKWDQDFLNYVKT-LENKKPVIFCGDLNVAHKEVDLKNPKTNVKNAGFTPEERKGF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
++++G +D FR + E Y++WS+R +AR N GWR+DY +SE L N+KD I
Sbjct: 175 DNIVNSGFLDTFRE-FNKEPDNYSWWSYR-FNARARNIGWRIDYFCISESLRGNLKDAFI 232
Query: 310 RSDVQGSTHCPV 321
++ GS HCPV
Sbjct: 233 MPEIMGSDHCPV 244
>gi|385227690|ref|YP_005787614.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
gi|344332603|gb|AEN17633.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
Length = 250
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/256 (39%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLVSWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +K++PL+V YGI ++ GRV+T +F+ F + VY PNS L
Sbjct: 56 CALKKGYSGVVTFSKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 NELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
D+ GS HCPV L L
Sbjct: 234 YKDILGSDHCPVGLEL 249
>gi|311032922|ref|ZP_07711012.1| exodeoxyribonuclease III [Bacillus sp. m3-13]
Length = 254
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 148/260 (56%), Gaps = 12/260 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RACVKK ++Y + + DI +Q+ + QE ++ Y+ +W
Sbjct: 1 MKLVSWNVNGIRACVKK-GFMDYFNDMDADIFCIQETKLQEGQID----LDTPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR----GRVITAKFKRFTFITVYVPNSGIK 186
KG G + TK KPL V+YG+ + GR++T +++ F + VY PNS
Sbjct: 56 YAIKKGYSGTAVFTKMKPLQVRYGLDEKKAEECEPEGRILTLEYEDFFLVNVYTPNSQRD 115
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
L + FR+ W+ F YI+ L ++I+ GDLNV IDL NP N +G+T EER
Sbjct: 116 LARLPFRLDWEDRFLAYIKM-LDQQKSVIVCGDLNVAHAEIDLKNPKSNRNNSGFTEEER 174
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
LL G D FRH YP+ YT+WS+ NK R N GWR+DY +VS+ L ++KD
Sbjct: 175 GKMTRLLGEGFSDTFRHFYPELTDKYTWWSYMNK-VRERNIGWRIDYFIVSDNLKGSLKD 233
Query: 307 CIIRSDVQGSTHCPVVLRLS 326
I SD+ GS HCPVVL L+
Sbjct: 234 AEIHSDIMGSDHCPVVLILN 253
>gi|416999368|ref|ZP_11939959.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333976808|gb|EGL77670.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 251
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 150/259 (57%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA V K +E E + DI LQ+ + Q D++ L Y +W
Sbjct: 1 MKLISWNVNGLRAAVTK-GFMESFNELDADIFCLQETKLQPDQIS----LELPGYEQYWN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + T+ KPL+V GI G+ +Q GRVITA++ F + Y PNS +L
Sbjct: 56 SAVKKGYSGTAVFTRIKPLSVTNGI-GIEEHDQEGRVITAEYDNFYLVCCYTPNSQRELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F +Y+ EL +I+ GDLNV Q IDL NP N K AG++ EER
Sbjct: 115 RLDYRMNWEDAFRNYLL-ELDKKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL G D FRHLYPD Y++WS+ K AR N GWR+DY + S++L + I++
Sbjct: 174 MTELLGAGFTDTFRHLYPDAIEQYSWWSYMGK-ARERNTGWRIDYFITSKRLDDKIQEAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + GS HCPV L + L
Sbjct: 233 IHQQIFGSDHCPVELVIDL 251
>gi|299538266|ref|ZP_07051551.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|424736313|ref|ZP_18164773.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
gi|298726468|gb|EFI67058.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|422949916|gb|EKU44289.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
Length = 251
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 146/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RAC+ K +E+ + + D +Q+ +CQ +V S+ Y +W
Sbjct: 1 MKFISWNVNGIRACLGK-GFLEFFHQIDADFFCIQETKCQAGQVV----LSIEGYEQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK PL+VKYG+ +Q GR+IT ++K F + VY PN+ L
Sbjct: 56 YAQKKGYSGTAIFTKHTPLSVKYGVGAEDSQDEGRIITLEYKNFYLVNVYTPNAQRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ R+ W+ +Y+Q EL ++ GDLNV IDL N N+ +G+T EER F
Sbjct: 116 LPLRLQWEDRLANYLQ-ELNCQKPVVYCGDLNVAHTEIDLKNAKSNIGNSGFTYEERAKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL++G VD+FR+ +P+E YT+WS+ NK R N GWR+DY +VS QL I+ I
Sbjct: 175 SALLESGFVDSFRYKHPEETDHYTWWSYMNK-VRERNIGWRIDYFVVSNQLKEQIESATI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+ GS HCP+ L+L
Sbjct: 234 HPHIMGSDHCPIELQL 249
>gi|325269387|ref|ZP_08136004.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
gi|324988308|gb|EGC20274.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
Length = 249
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 156/257 (60%), Gaps = 12/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRACV K+ ++ + D LQ+ + Q ++ SF Y +W
Sbjct: 1 MKLISWNVNGLRACVGKDFEQQF-KALDADFFCLQETKMQAGQLDISF----PGYTSYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G G + TK KPL V YGI G+ + GRVIT + F +TVY PNS L+
Sbjct: 56 YADKKGYSGTAIFTKHKPLDVTYGI-GMDEHDHEGRVITLEMDDFYLVTVYTPNSQDGLR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W++ F +Y+ L +++ GD+NV + ID+ NP N + AG+T EER
Sbjct: 115 RLDYRMKWEKDFQNYLHW-LDEKKPVVVCGDMNVAHEEIDIKNPKTNRRNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LLD+G +D FR LYP E+ Y++WS+R + AR N GWR+DY L+SE+L + ++D
Sbjct: 174 MTQLLDSGFIDTFRSLYP-EQVTYSWWSYRFR-ARERNTGWRIDYFLISERLRDRLEDAK 231
Query: 309 IRSDVQGSTHCPVVLRL 325
I +++ GS HCP+ + L
Sbjct: 232 IHTEIMGSDHCPIEVDL 248
>gi|357405967|ref|YP_004917891.1| exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
gi|351718632|emb|CCE24306.1| Exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
Length = 254
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/260 (41%), Positives = 157/260 (60%), Gaps = 10/260 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA + K E + + + D + LQ+ + Q+D+V + +S+ YH++
Sbjct: 1 MKIISWNVNGIRAVMGK-GFAESLEKLDADCILLQETKAQDDQVQTAL-ESIDSYHIYSN 58
Query: 132 GSD-KGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG GV LLTK++P+ + I G+ +Q GRVI A+F+ F + VYVPNSG KL
Sbjct: 59 SAGRKGYSGVALLTKQEPIQILQDI-GIDEHDQEGRVIAAEFENFILLNVYVPNSGEKLV 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEERR 247
+D+R IWD+ Y Q +L S +I GD NV Q ID+A P N K+AGYT E
Sbjct: 118 RLDYRKIWDKELLAYFQ-QLNSRKPLIACGDFNVAHQEIDIARPKANYNKSAGYTQTEID 176
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
+L+ G VD FRHL+P E AY++WS+R AR N GWR+DY L S+ L +K+
Sbjct: 177 GISRMLEAGFVDTFRHLHP-ETVAYSWWSYR-AGARAKNIGWRIDYVLTSQALIGKVKNA 234
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
I D+ GS HCPV + + L
Sbjct: 235 FIAPDIFGSDHCPVGIEIDL 254
>gi|238018561|ref|ZP_04598987.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
gi|237865032|gb|EEP66322.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
Length = 251
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 150/259 (57%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA V K +E E + DI LQ+ + Q D++ L Y +W
Sbjct: 1 MKLISWNVNGLRAAVTK-GFMESFNELDADIFCLQETKLQPDQIS----LELPGYEQYWN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + T+ KPL+V GI G+ +Q GRVITA++ F + Y PNS +L
Sbjct: 56 SAVKKGYSGTAVFTRIKPLSVTNGI-GIEEHDQEGRVITAEYDNFYLVCCYTPNSQRELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F +Y+ EL +I+ GDLNV Q IDL NP N K AG++ EER
Sbjct: 115 RLEYRMAWEDAFRNYLL-ELDKKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL G D FRHLYPD Y++WS+ K AR N GWR+DY + S++L + I++
Sbjct: 174 MTELLGAGFTDTFRHLYPDAIEEYSWWSYMGK-ARERNTGWRIDYFITSKRLDDKIQEAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + GS HCPV L + L
Sbjct: 233 IHQQIFGSDHCPVELDIDL 251
>gi|405982630|ref|ZP_11040941.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
gi|404389339|gb|EJZ84415.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
Length = 285
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 154/291 (52%), Gaps = 41/291 (14%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++ +WNVNGLRA VKK E + + DI+ALQ+ + QE ++ SL Y FW
Sbjct: 1 MRFVSWNVNGLRAAVKK-GFEESVAALDADIIALQETKLQEGQID----LSLPGYFQFWS 55
Query: 132 GSD-KGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
++ KG G + ++KPL +G+ + + GR++ +F + F+ VY PN+ +L
Sbjct: 56 YAERKGYSGTAVFCRQKPLRALHGLGDSALDDEGRIVALEFDDYWFVDVYTPNAQNELAR 115
Query: 190 IDFRMIWDQHFYDYI---------------------------------QSELRSNSNIII 216
ID RM WD F D+ + E S +++
Sbjct: 116 IDHRMAWDDAFRDFCKNLEKGAIPAGVAVQDCAEGEGHVSISELPLTQEGERTSAKPVVM 175
Query: 217 SGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWS 276
GD NV Q IDL NP N AG++ EER F LLD G VD FR L+PDE GAY++WS
Sbjct: 176 CGDFNVAHQEIDLKNPGPNRGNAGFSDEEREKFTRLLDAGFVDTFRVLHPDEAGAYSWWS 235
Query: 277 FRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+R +AR NN GWR+DY LVSE L + I D + +D+ GS HCPV + L +
Sbjct: 236 YR-FNARKNNAGWRIDYFLVSESLRDAIHDARMHADIMGSDHCPVSVELDV 285
>gi|289450732|ref|YP_003475042.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289185279|gb|ADC91704.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 251
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 152/257 (59%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
K+ +WNVNGLRACV+K VE + + DI+ +Q+ + Q ++ L Y +W
Sbjct: 2 TKLISWNVNGLRACVEK-GFVESMQHLSADIICIQESKLQAGQID----LDLPGYCQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGI--PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K +PL V YG+ P +Q GR+ITA+F + TVY PNS LK
Sbjct: 57 YARKKGYSGTAIFSKIEPLRVTYGMNMPD-HDQEGRLITAEFPDYYLCTVYTPNSQDGLK 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +R W++ F Y+Q ELR +II GDLNV + IDL NP N K G+T EER
Sbjct: 116 RLVYRQSWERDFLTYLQ-ELRRVKPVIICGDLNVAHREIDLKNPAANRKNPGFTDEERAE 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F+ LLD G VD FR+ YP++ Y++WS+R +AR N GWR+DY LVS +L + ++
Sbjct: 175 FQTLLDAGFVDTFRYFYPEKPEEYSWWSYR-FNARSRNAGWRIDYFLVSNELTDRLQSAS 233
Query: 309 IRSDVQGSTHCPVVLRL 325
I ++ GS HCPV L L
Sbjct: 234 IHQEIFGSDHCPVELIL 250
>gi|340349685|ref|ZP_08672691.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|387133768|ref|YP_006299740.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|445112647|ref|ZP_21377202.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
gi|339610439|gb|EGQ15291.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|386376616|gb|AFJ08042.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|444841476|gb|ELX68491.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
Length = 250
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 152/259 (58%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRACV K E E + D LQ+ + Q ++ +F Y +W
Sbjct: 1 MKFISWNVNGLRACVTK-GFKESFAEIDADFFCLQETKMQAGQLDIAF----DGYESYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G G + TK KPL+V YG+ G+ + GRVIT + ++F +T Y PN+ LK
Sbjct: 56 YADKKGYSGTAIFTKHKPLSVSYGL-GIDEHDHEGRVITLEMEKFYLVTCYTPNAQDGLK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ L +I+ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMQWEDDFQAYVK-RLDEKKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+ L G +D+FR LYP E+ Y++WS+R K AR N GWR+DY L+S +L + D
Sbjct: 174 MTQFLGNGFIDSFRTLYP-EQVTYSWWSYRFK-AREKNAGWRIDYFLLSNRLREQLVDAK 231
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I ++V GS HCPV + L+L
Sbjct: 232 IHTEVYGSDHCPVEVELNL 250
>gi|282858966|ref|ZP_06268104.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|424898885|ref|ZP_18322433.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
gi|282588246|gb|EFB93413.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|388593595|gb|EIM33832.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
Length = 249
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 152/257 (59%), Gaps = 12/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRACV KN ++ + D LQ+ + QE ++ SF Y +W
Sbjct: 1 MKFISWNVNGLRACVGKNFKEDFA-ALDADFFCLQETKMQEGQLDLSF----PGYESYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G G + TK KPLTV GI G+ + GRVIT + F +TVY PNS +LK
Sbjct: 56 YADKKGYSGTAIFTKHKPLTVTTGI-GIDEHDHEGRVITLEMDDFYLVTVYTPNSQDELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +L + +I+ GD+NV + IDL NP N AG++ EER
Sbjct: 115 RLAYRMQWETDFQAYLH-KLDEHKPVIVCGDMNVAHEEIDLKNPKTNHHNAGFSDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LL+ G D FR+LYP E+ Y++WS+R K AR N GWR+DY L+S +L + +KD
Sbjct: 174 MTILLNNGFTDTFRYLYP-EQVTYSWWSYRFK-AREKNTGWRIDYFLISNRLRDRLKDAK 231
Query: 309 IRSDVQGSTHCPVVLRL 325
I +++ GS HCPV L L
Sbjct: 232 IHTEIFGSDHCPVELTL 248
>gi|392947967|ref|ZP_10313585.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
gi|392436819|gb|EIW14725.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
Length = 254
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 149/259 (57%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VK + ++ E++ D +Q+ + Q ++ F Y +W
Sbjct: 1 MKLISWNVNGLRAAVK-HGFIDIFNEQDADFFCVQETKLQAGQIDLDFPG----YQQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK PL V YGI GV + GRVIT ++ + +T Y PNSG +LK
Sbjct: 56 YAERKGYSGTAIFTKHTPLNVTYGI-GVPEFDTEGRVITLEYADYYVLTCYTPNSGGELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R W+ F YI S L +N +I GDLNV ++IDL N N +AG+T EER
Sbjct: 115 RLDYRQHWEDAFLTYINS-LSANKPLIFCGDLNVAHENIDLKNWRSNHHSAGFTDEERGK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL G D FRH YPD+ Y++WS+R AR NN GWR+DY + S+QL + +
Sbjct: 174 FDRLLANGYTDTFRHFYPDQTDIYSWWSYRGH-ARDNNSGWRIDYFITSQQLDGQLLNAR 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +DV GS HCPV L + L
Sbjct: 233 ILNDVFGSDHCPVELDIIL 251
>gi|297618884|ref|YP_003706989.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
gi|297377861|gb|ADI36016.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
Length = 249
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/255 (40%), Positives = 149/255 (58%), Gaps = 9/255 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG++A ++K V+++ +ENPDI+ LQ+I+ P LS Y +W
Sbjct: 1 MKLISWNVNGIKAILQK-GFVDFVKQENPDILCLQEIKTNS---PSQIL-DLSEYKQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
S KG G + TK+KP + YG+ ++ GRVITA++ + + VY PNS L +
Sbjct: 56 TASKKGYSGTAIFTKQKPKNITYGMDNFPDEEGRVITAEYDNYYLVNVYTPNSQRGLTRL 115
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+RM WD F +Y+ S L + +I GDLNV + IDL NP N K AG+T EER F
Sbjct: 116 DYRMKWDTKFLEYLLS-LNESKPLIFCGDLNVAHKEIDLKNPKTNKKHAGFTEEERMGFD 174
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+ ++ VD FR L+ E YT+WS+ + +AR N GWR+DY S + N +K +I
Sbjct: 175 KYVENNFVDTFR-LFNKESDNYTWWSYMH-NARAKNIGWRIDYFCTSNSIVNYVKKSVIL 232
Query: 311 SDVQGSTHCPVVLRL 325
+ GS HCP+ L L
Sbjct: 233 DKIYGSDHCPIKLEL 247
>gi|420469649|ref|ZP_14968365.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
gi|393083481|gb|EJB84186.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
Length = 250
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 150/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW
Sbjct: 1 MKLISWNVNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK++PL V YGI ++ GRVIT +F+ F + VY PNS L
Sbjct: 56 CAIKKGYSGVVTFTKKEPLNVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ F +++ L +I+ GDLNV IDL NP N K AG++ EER F
Sbjct: 116 LSYRMSWEVEFKKFLKV-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL+ G +D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I
Sbjct: 175 SELLNAGFIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALI 233
Query: 310 RSDVQGSTHCPVVLRL 325
++ GS HCPV L L
Sbjct: 234 YKNILGSDHCPVGLEL 249
>gi|427413104|ref|ZP_18903296.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
gi|425715920|gb|EKU78906.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
Length = 251
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 150/259 (57%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA V K +E + + D+ LQ+ + Q ++ L Y +W
Sbjct: 1 MKLISWNVNGLRAAVTK-GFMESFEKLDADMFCLQETKLQLHQI----ELELPGYEQYWN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + T+ KPL V YGI G+ +Q GRVITA++ F +T Y PNS +L
Sbjct: 56 SAVKKGYSGTAIFTRVKPLNVIYGI-GIEEHDQEGRVITAEYDNFYLVTCYTPNSQRELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F Y+ EL + +I+ GDLNV IDL NP N K AG+T EER
Sbjct: 115 RLEYRMTWEDAFRAYLL-ELDAKKPVILCGDLNVAHNEIDLKNPKTNRKNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL+ G D FR LYPD AY++WS+ K AR N GWR+DY + S +L +I +
Sbjct: 174 MTELLNAGFTDTFRKLYPDVTDAYSWWSYMGK-ARDRNVGWRIDYFITSARLDKDIVEAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I D+ GS HCPV L ++L
Sbjct: 233 IHPDIFGSDHCPVELEINL 251
>gi|392960130|ref|ZP_10325603.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
gi|392455642|gb|EIW32426.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
Length = 250
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 148/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC+ K ++ + DI +Q+ + P+ L Y +W
Sbjct: 1 MKLISWNVNGLRACLSK-GFEDFFNTADADIFCIQETKMH----PDQAEIGLIGYEKYWN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG G + T+ PL+V YG+ +Q GR+IT +F+ F + VY PNS +L
Sbjct: 56 SAVKKGYSGTAVFTRITPLSVTYGLNIEEHDQEGRIITLEFEDFFLVNVYTPNSKRELLR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y+ + L + +II GD+NV Q ID+ NP N + AG+T EER
Sbjct: 116 LDYRMRWEDEFRTYLTA-LDQSKPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL+ G D FRH+YPD+ AYT+WS+ +AR N GWR+DY LVS L + IK+ I
Sbjct: 175 TALLEAGFTDTFRHIYPDKIDAYTWWSYM-MNARARNIGWRIDYFLVSNTLRDAIKEATI 233
Query: 310 RSDVQGSTHCPVVLRL 325
DV GS HCP+ L +
Sbjct: 234 YPDVMGSDHCPIGLEI 249
>gi|429726547|ref|ZP_19261335.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
gi|429146016|gb|EKX89089.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
Length = 267
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 151/257 (58%), Gaps = 11/257 (4%)
Query: 70 TKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMF 129
+ +K +WNVNGLRAC +K E + + D LQ+ + QE ++ +F Y +
Sbjct: 16 SMMKFISWNVNGLRACREK-GFEESFAQLDADCFCLQETKLQEGQIDIAF----DGYESY 70
Query: 130 W-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIK 186
W KG G + T+ KPL+V+YG+ G+ + GRVIT +F+ +TVY PNS
Sbjct: 71 WNYAEKKGYSGTCIFTRIKPLSVRYGL-GIEEHDHEGRVITLEFEDLYLLTVYTPNSQDG 129
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
L+ +D+RM WD F Y+Q +L ++ ++I GDLNV Q IDL NP N K AG+T EER
Sbjct: 130 LRRLDYRMTWDDDFRAYVQ-QLDAHKPVVICGDLNVAHQEIDLKNPKTNRKNAGFTDEER 188
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
+ F +LL+ G D +R PD +Y++WS+R K AR N GWR+DY + S+ L + +
Sbjct: 189 QKFSQLLEAGFTDTYRFFNPDLTDSYSWWSYRFK-AREKNAGWRIDYFVTSQSLNDRLVS 247
Query: 307 CIIRSDVQGSTHCPVVL 323
I ++ GS HCPV L
Sbjct: 248 ADIHQEIFGSDHCPVEL 264
>gi|359482196|ref|XP_002274714.2| PREDICTED: apurinic endonuclease-redox protein-like [Vitis
vinifera]
Length = 479
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 167/266 (62%), Gaps = 15/266 (5%)
Query: 72 VKVSTWNVNGLRACVKKN--ACVEYILEENPDIMALQQIRCQEDEVPESFRKSL--SHYH 127
VK+ +WNVNGLR +K + ++ E+ D+++LQ+ + QE +V E+ ++S+ + +
Sbjct: 219 VKLMSWNVNGLRGLLKSKGFSALKLAQREDFDVLSLQETKLQEKDV-EAIKQSVIEGYEN 277
Query: 128 MFWIGS--DKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYVPNS 183
FW S G G ++++ KPL+V+YG+ G+S+ GR++TA+F+ F ++ YVPNS
Sbjct: 278 SFWTCSVSKLGYSGTAIISRIKPLSVRYGL-GISDHDSEGRLLTAEFESFYLLSGYVPNS 336
Query: 184 GIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYT 242
G LK + +R+ WD Y++ EL + +I++GDLN Q ID+ +P N ++AG+T
Sbjct: 337 GDGLKRLSYRVTQWDSALGSYMK-ELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFT 395
Query: 243 VEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLA 301
EER++ + L G VD+FR +P G YTYW +RN R +NKGWRLDY LVSE +A
Sbjct: 396 DEERQSLEKNFLSKGFVDSFRKQHPGVVG-YTYWGYRN-GCRKSNKGWRLDYFLVSESIA 453
Query: 302 NNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ + D I D+ GS HCP+ L L L
Sbjct: 454 DKVHDSYILPDIGGSDHCPIGLVLKL 479
>gi|392424943|ref|YP_006465937.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
gi|391354906|gb|AFM40605.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
Length = 253
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 156/252 (61%), Gaps = 9/252 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG R+C+ K +++ DI +Q+ + ++ S +++
Sbjct: 1 MKLISWNVNGFRSCLTK-GFLDFFNTVEADIFCIQESKLSAGQIELSLEGYTQYFNY--- 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYG--IPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK++PLT +G IP + ++ GR+IT ++ F I +Y PNS +L
Sbjct: 57 AERKGYSGTAVFTKKQPLTCSFGMGIP-LHDKEGRMITLEYDEFYLINLYAPNSQAELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++R+ W++ F Y+Q+ L S+ +I GDLNV Q IDL NP N + AG+T EER F
Sbjct: 116 LEYRLTWEEDFRRYVQT-LNSHKPVIFCGDLNVAHQEIDLKNPQANRRNAGFTDEERLKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL++G +D FR+LYP+++ +Y++WS+R +AR+ N GWR+DY +SE+L ++++ I
Sbjct: 175 SELLESGFIDTFRYLYPEQKDSYSWWSYR-FNARVRNAGWRIDYFCMSERLKDSLQSAEI 233
Query: 310 RSDVQGSTHCPV 321
+ V GS HCPV
Sbjct: 234 YTSVLGSDHCPV 245
>gi|126651518|ref|ZP_01723722.1| exodeoxyribonuclease [Bacillus sp. B14905]
gi|126591771|gb|EAZ85867.1| exodeoxyribonuclease [Bacillus sp. B14905]
Length = 251
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 146/258 (56%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RAC+ K +++ + D +Q+ +CQ +V +L Y +W
Sbjct: 1 MKFISWNVNGIRACLGK-GFLDFFHQIEADFFCIQETKCQAGQV----ELALDDYEQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK PL+V YG+ +Q GR+IT +++ F + VY PN+ L
Sbjct: 56 YAQKKGYSGTAIFTKHTPLSVMYGVGDEDSQDEGRIITLEYQNFYLVNVYTPNAQRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ R+ W+ Y+Q +L S ++ GDLNV IDL N NV +G+T EER F
Sbjct: 116 LPLRLTWEDRLAGYLQ-DLNSKKPVVYCGDLNVAHTEIDLKNAKSNVGNSGFTYEERAKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL +G VD+FR+ +P+E +T+WS+ NK R N GWR+DY +VSEQL N I I
Sbjct: 175 SELLASGFVDSFRYKHPNETDHFTWWSYMNK-VRERNIGWRIDYFIVSEQLKNQIDQATI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
+ GS HCP+ L+L +
Sbjct: 234 HPHIMGSDHCPIELQLHV 251
>gi|308179822|ref|YP_003923950.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308045313|gb|ADN97856.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 254
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 150/259 (57%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VK + V E + D +Q+ + Q ++ F Y+ +W
Sbjct: 1 MKLISWNVNGLRAAVK-HGFVTTFNELDADFFCVQETKLQAGQIELDFPG----YYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL V YGI GV + GRVIT ++ + +T Y PNSG +LK
Sbjct: 56 YAERKGYSGTAIFTKHEPLNVTYGI-GVPEFDDEGRVITLEYADYYVLTCYTPNSGGELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R W+ F YI S L +N +I GDLNV ++IDL N N +AG+T EER
Sbjct: 115 RLDYRQQWEDAFLTYINS-LSANKPLIFCGDLNVAHENIDLKNWHSNHHSAGFTDEERTK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL G D FRH YPD+ Y++WS+R AR NN GWR+DY + S+QL + + +
Sbjct: 174 FDRLLAAGYTDTFRHFYPDQTDIYSWWSYRGH-ARDNNSGWRIDYFITSQQLDSQLLNAR 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCPV L + L
Sbjct: 233 IHNEIFGSDHCPVELDIIL 251
>gi|297739882|emb|CBI30064.3| unnamed protein product [Vitis vinifera]
Length = 542
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 167/266 (62%), Gaps = 15/266 (5%)
Query: 72 VKVSTWNVNGLRACVKKN--ACVEYILEENPDIMALQQIRCQEDEVPESFRKSL--SHYH 127
VK+ +WNVNGLR +K + ++ E+ D+++LQ+ + QE +V E+ ++S+ + +
Sbjct: 282 VKLMSWNVNGLRGLLKSKGFSALKLAQREDFDVLSLQETKLQEKDV-EAIKQSVIEGYEN 340
Query: 128 MFWIGS--DKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYVPNS 183
FW S G G ++++ KPL+V+YG+ G+S+ GR++TA+F+ F ++ YVPNS
Sbjct: 341 SFWTCSVSKLGYSGTAIISRIKPLSVRYGL-GISDHDSEGRLLTAEFESFYLLSGYVPNS 399
Query: 184 GIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYT 242
G LK + +R+ WD Y++ EL + +I++GDLN Q ID+ +P N ++AG+T
Sbjct: 400 GDGLKRLSYRVTQWDSALGSYMK-ELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFT 458
Query: 243 VEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLA 301
EER++ + L G VD+FR +P G YTYW +RN R +NKGWRLDY LVSE +A
Sbjct: 459 DEERQSLEKNFLSKGFVDSFRKQHPGVVG-YTYWGYRN-GCRKSNKGWRLDYFLVSESIA 516
Query: 302 NNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ + D I D+ GS HCP+ L L L
Sbjct: 517 DKVHDSYILPDIGGSDHCPIGLVLKL 542
>gi|345881123|ref|ZP_08832651.1| exodeoxyribonuclease [Prevotella oulorum F0390]
gi|343920840|gb|EGV31568.1| exodeoxyribonuclease [Prevotella oulorum F0390]
Length = 250
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 149/259 (57%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRACV K+ ++ + D LQ+ + Q ++ F Y FW
Sbjct: 1 MKFISWNVNGLRACVGKDFEQQFK-ALDADFFCLQETKMQAGQLDLQF----PGYQSFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + K+ PL V YGI G+ + GRVIT +++ F +TVY PNS +L+
Sbjct: 56 YAEKKGYSGTAIYAKQAPLAVSYGI-GIDEHDHEGRVITLEYESFFLVTVYTPNSQDELR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+ L +I+ GD+NV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMQWEDDFQAYLH-RLDEQKPVIVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LL G +D FR LYP E+ Y++WS+R + AR N GWR+DY L+SE+L + D
Sbjct: 174 MTQLLGHGFIDTFRTLYP-EQQTYSWWSYRFR-AREKNTGWRIDYFLISERLRPQLTDAK 231
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV + L L
Sbjct: 232 IHTDIMGSDHCPVEVDLDL 250
>gi|403335404|gb|EJY66875.1| Exonuclease III [Oxytricha trifallax]
gi|403370677|gb|EJY85206.1| Exonuclease III [Oxytricha trifallax]
Length = 583
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 163/290 (56%), Gaps = 23/290 (7%)
Query: 50 PKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIR 109
P + D HE+ + ++ + WN+NGL+A + K ++ E+PDI+ +I+
Sbjct: 57 PSAKFHGDAKHEDFK----SDQLNIWVWNINGLQAVINKGMLDVFLQGEDPDIVCFNEIK 112
Query: 110 CQEDEVPESFRKSLSH------YHMFW--IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-- 159
PE + + H Y +W S KG G GL+TK KP+ V + I G+
Sbjct: 113 TD----PEKIKSASFHTKIPKDYEQYWNCSKSKKGYSGTGLITKIKPIKVTFDI-GIEEH 167
Query: 160 NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMI-WDQHFYDYI-QSELRSNSNIIIS 217
+Q GRVITA+F +F + VYVPNSG L+ + +R WD+ F+DY+ ++ + +N +I++
Sbjct: 168 DQEGRVITAEFSKFVLVAVYVPNSGDDLRRLSYRTQEWDKAFFDYLDRTRIETNKPLILT 227
Query: 218 GDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSF 277
GDLNV +D+ + K A YT EER++F ++ G +D FRHLYPD+ YTY+S
Sbjct: 228 GDLNVARNELDVFDTKGKDKVACYTPEERKSFESFINRGYIDTFRHLYPDKR-EYTYFSA 286
Query: 278 RNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
R + ++ NKGWR+DY +V + N + D I D GS H PV L L L
Sbjct: 287 RFNN-KVTNKGWRIDYFVVHQDDINMVTDVTIHKDYNGSDHVPVCLHLDL 335
>gi|294055155|ref|YP_003548813.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
gi|293614488|gb|ADE54643.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
Length = 262
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 157/260 (60%), Gaps = 17/260 (6%)
Query: 76 TWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHY-HMFW-IGS 133
+WNVNGLRA +KK +++ + PD++ LQ+ + D + + + Y +++W
Sbjct: 8 SWNVNGLRAVLKK-GFDDFLASQQPDVLCLQETKISADLTADF---AFAGYPYVYWNCAE 63
Query: 134 DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNS-----GIK 186
KG G ++++ +P++V+YG+ G+ +Q GRVITA+F+ + +TVY PNS +
Sbjct: 64 KKGYSGTAIISQIEPISVRYGL-GIEKHDQEGRVITAEFEDYYLVTVYTPNSQNHDENKR 122
Query: 187 LKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
+ +D+R + WD F Y++ L ++ GDLNV IDLANP N K AG+T EE
Sbjct: 123 PRRLDYRTLEWDVDFLAYVKG-LEVTKPVVFCGDLNVAHTEIDLANPKTNRKNAGFTDEE 181
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F +++ G +D FRHLYPD Y++WS+R +AR N GWR+DY VS+ + N I+
Sbjct: 182 RGRFDAIIEAGFIDTFRHLYPDRTEQYSWWSYR-AAARQRNIGWRIDYFCVSDAVKNQIR 240
Query: 306 DCIIRSDVQGSTHCPVVLRL 325
D I +D GS HCPV LRL
Sbjct: 241 DATILADTLGSDHCPVGLRL 260
>gi|421053769|ref|ZP_15516741.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|421061178|ref|ZP_15523542.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|421066246|ref|ZP_15527876.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
gi|421070869|ref|ZP_15531997.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392441646|gb|EIW19276.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|392447774|gb|EIW24993.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392450902|gb|EIW27905.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|392457143|gb|EIW33851.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
Length = 250
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 147/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC+ K ++ + DI +Q+ + P+ L Y +W
Sbjct: 1 MKLISWNVNGLRACLSK-GFEDFFNTADADIFCIQETKMH----PDQAEIGLIGYEKYWN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG G + T+ PL+V YG+ +Q GR+IT +F+ F + VY PNS +L
Sbjct: 56 SAVKKGYSGTAVFTRIAPLSVTYGLNIEEHDQEGRIITLEFEDFFLVNVYTPNSKRELLR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y+ + L + +II GD+NV Q ID+ NP N + AG+T EER
Sbjct: 116 LDYRMRWEDEFRTYLTA-LDQSKPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL+ G D FRH+YPD+ AYT+WS+ +AR N GWR+DY LVS L IK+ I
Sbjct: 175 TALLEAGFTDTFRHIYPDKIDAYTWWSYM-MNARARNIGWRIDYFLVSNALREAIKEATI 233
Query: 310 RSDVQGSTHCPVVLRL 325
DV GS HCP+ L +
Sbjct: 234 YPDVMGSDHCPIGLEI 249
>gi|45358575|ref|NP_988132.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis S2]
gi|44921333|emb|CAF30568.1| exonuclease III [Methanococcus maripaludis S2]
Length = 249
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 149/252 (59%), Gaps = 10/252 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RAC+K N + ++ E+PDIM +Q+ + Q +V + L Y +W
Sbjct: 1 MKMLSWNVNGIRACLK-NGFMNFLERESPDIMCIQETKVQSGQV----QLGLDGYFQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KP V G+ N GRVIT +F + + VY PNS L
Sbjct: 56 YAERKGYSGTAIFTKIKPNNVILGMENSEHNNEGRVITLEFDEYYLVNVYTPNSQRGLTR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++R WD+ F YI++ L + ++ GDLNV + IDL NP NVK AG+T EER F
Sbjct: 116 LEYRQKWDEDFLSYIKT-LETKKPVVFCGDLNVAHKEIDLKNPKTNVKNAGFTPEERNGF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
++++G +D FR + +E Y++WS+R +AR N GWR+DY +S+ L NN+KD I
Sbjct: 175 DNIVNSGFLDTFRE-FNNEPDNYSWWSYR-FNARARNIGWRIDYFCISKSLRNNLKDAYI 232
Query: 310 RSDVQGSTHCPV 321
+V GS HCPV
Sbjct: 233 MPEVMGSDHCPV 244
>gi|408907629|emb|CCM11287.1| Exodeoxyribonuclease III [Helicobacter heilmannii ASB1.4]
Length = 251
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 155/257 (60%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNGLRAC++K +++ + DI +Q+ + Q PE + YH FW
Sbjct: 1 MRLVSWNVNGLRACMQK-GFKDFLEQSGADIFCVQETKMQ----PEQANFAFEGYHAFWN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG GV L+KE+PL+V+YGI G++ GRV+ ++ +F + VYVPN+ L
Sbjct: 56 SAVKKGYSGVLTLSKEEPLSVRYGI-GIAEHDLEGRVVVCEYSQFYLVNVYVPNAQRGLL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +R+ W++ F ++ S L ++ +++ GDLNV IDL NP N AG++ ER
Sbjct: 115 RLPYRLSWEKAFRGFL-SGLVAHKGVLVCGDLNVAHTEIDLTNPQANRYNAGFSDPERHA 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL G +D +RH YP+++ AYT+WS+ + AR N GWR+DY L S+ L + +K+
Sbjct: 174 FSALLQEGFIDTYRHFYPEQKEAYTWWSYIGQ-ARERNVGWRIDYFLASQNLQDTLKNAH 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I + + GS HCPV L L
Sbjct: 233 IYTHIFGSDHCPVGLEL 249
>gi|403365259|gb|EJY82409.1| Exonuclease III [Oxytricha trifallax]
Length = 645
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 163/290 (56%), Gaps = 23/290 (7%)
Query: 50 PKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIR 109
P + D HE+ + ++ + WN+NGL+A + K ++ E+PDI+ +I+
Sbjct: 57 PSAKFHGDAKHEDFK----SDQLNIWVWNINGLQAVINKGMLDVFLQGEDPDIVCFNEIK 112
Query: 110 CQEDEVPESFRKSLSH------YHMFW--IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-- 159
PE + + H Y +W S KG G GL+TK KP+ V + I G+
Sbjct: 113 TD----PEKIKSASFHTKIPKDYEQYWNCSKSKKGYSGTGLITKIKPIKVTFDI-GIEEH 167
Query: 160 NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMI-WDQHFYDYI-QSELRSNSNIIIS 217
+Q GRVITA+F +F + VYVPNSG L+ + +R WD+ F+DY+ ++ + +N +I++
Sbjct: 168 DQEGRVITAEFSKFVLVAVYVPNSGDDLRRLSYRTQEWDKAFFDYLDRTRIETNKPLILT 227
Query: 218 GDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSF 277
GDLNV +D+ + K A YT EER++F ++ G +D FRHLYPD+ YTY+S
Sbjct: 228 GDLNVARNELDVFDTKGKDKVACYTPEERKSFESFINRGYIDTFRHLYPDKR-EYTYFSA 286
Query: 278 RNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
R + ++ NKGWR+DY +V + N + D I D GS H PV L L L
Sbjct: 287 RFNN-KVTNKGWRIDYFVVHQDDINMVTDVTIHKDYNGSDHVPVCLHLDL 335
>gi|403336088|gb|EJY67231.1| Exonuclease III [Oxytricha trifallax]
Length = 640
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 163/290 (56%), Gaps = 23/290 (7%)
Query: 50 PKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIR 109
P + D HE+ + ++ + WN+NGL+A + K ++ E+PDI+ +I+
Sbjct: 57 PSAKFHGDAKHEDFK----SDQLNIWVWNINGLQAVINKGMLDVFLQGEDPDIVCFNEIK 112
Query: 110 CQEDEVPESFRKSLSH------YHMFW--IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-- 159
PE + + H Y +W S KG G GL+TK KP+ V + I G+
Sbjct: 113 TD----PEKIKSASFHTKIPKDYEQYWNCSKSKKGYSGTGLITKIKPIKVTFDI-GIEEH 167
Query: 160 NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMI-WDQHFYDYI-QSELRSNSNIIIS 217
+Q GRVITA+F +F + VYVPNSG L+ + +R WD+ F+DY+ ++ + +N +I++
Sbjct: 168 DQEGRVITAEFSKFVLVAVYVPNSGDDLRRLSYRTQEWDKAFFDYLDRTRIETNKPLILT 227
Query: 218 GDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSF 277
GDLNV +D+ + K A YT EER++F ++ G +D FRHLYPD+ YTY+S
Sbjct: 228 GDLNVARNELDVFDTKGKDKVACYTPEERKSFESFINRGYIDTFRHLYPDKR-EYTYFSA 286
Query: 278 RNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
R + ++ NKGWR+DY +V + N + D I D GS H PV L L L
Sbjct: 287 RFNN-KVTNKGWRIDYFVVHQDDINMVTDVTIHKDYNGSDHVPVCLHLDL 335
>gi|116333326|ref|YP_794853.1| exonuclease III [Lactobacillus brevis ATCC 367]
gi|116098673|gb|ABJ63822.1| Exonuclease III [Lactobacillus brevis ATCC 367]
Length = 254
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 142/257 (55%), Gaps = 9/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA VKK VE E N D +Q+ + Q ++ L Y+ +W
Sbjct: 1 MKFISWNVNGLRAIVKK-GFVETFQELNADFFGIQETKLQAGQI----ELDLPGYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G L TK +PL V YGI + GR IT ++ F +T Y PNSG LK
Sbjct: 56 YAERKGYSGTALFTKHQPLNVIYGIDAPEFDHEGRAITLEYPDFYVLTCYTPNSGSGLKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+DFR+ W+ F +IQ +L + +I GDLNV IDL NP N AG+T EER
Sbjct: 116 LDFRLGWEHAFLTFIQ-KLDAQKPVIFCGDLNVAHTEIDLKNPKTNHHNAGFTDEERAKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL G D FR+ PD Y++WS+R AR NN GWR+DY + S++L N+++D I
Sbjct: 175 TALLAAGYTDTFRYFNPDVTERYSWWSYR-FHARDNNAGWRIDYFITSQRLQNHLQDAKI 233
Query: 310 RSDVQGSTHCPVVLRLS 326
+ GS HCPV L ++
Sbjct: 234 LDQIMGSDHCPVELDVT 250
>gi|365130338|ref|ZP_09341407.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
gi|363620249|gb|EHL71547.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
Length = 251
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 152/259 (58%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
+K+ +WNVNG RA + K I E D++ LQ+ + Q P S YH +W
Sbjct: 1 MKLISWNVNGFRAILGKGFAD--IFEGFGADVVCLQETKMQ----PGQAEFSPPGYHQYW 54
Query: 131 IGSDK-GQGGVGLLTKEKPLTVKYGIPGVSN-QRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G G + T+ +PL+V+YGI + GR IT +F++F + VY PNS +L
Sbjct: 55 YSAEKKGYSGTAVFTRMEPLSVRYGIGKEEHSHEGRAITLEFEQFFLVNVYTPNSQNELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ Y+ + L + ++ GDLNV + IDL NP +N+ +AG++ EER+
Sbjct: 115 RLPYRMQWEDDLRAYLCA-LDTEKPVVYCGDLNVAHREIDLKNPKQNIHSAGFSYEERQK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LL +G VD FR LYPD G YT+WS+ + AR N GWR+DY +VSE+L I D +
Sbjct: 174 MTDLLMSGFVDTFRALYPDAAGRYTWWSYFRR-ARETNAGWRIDYFIVSERLREKIGDAL 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I SDV GS HCPV L L +
Sbjct: 233 IYSDVYGSDHCPVGLVLDV 251
>gi|429759794|ref|ZP_19292289.1| exodeoxyribonuclease III [Veillonella atypica KON]
gi|429179014|gb|EKY20276.1| exodeoxyribonuclease III [Veillonella atypica KON]
Length = 251
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 147/259 (56%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+KV +WNVNGLRA V K ++ E + DI LQ+ + Q P L Y FW
Sbjct: 1 MKVISWNVNGLRAAVTK-GFIDSFNELDADIFCLQETKLQ----PHQIELELPGYEQFWN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + T+ KP+ V GI G+ +Q GRVITA++ F + Y PNS +L
Sbjct: 56 SAVKKGYSGTAVFTRIKPIAVTNGI-GIEEHDQEGRVITAEYDNFYLVCCYTPNSQRELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+ EL +I+ GDLNV IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTWEDAFRAYLL-ELDKKKPVILCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL++G D FR+LYPD Y++WS+ K AR N GWR+DY + S++L + IK+
Sbjct: 174 MTELLESGFTDTFRYLYPDAVDEYSWWSYMGK-ARDRNVGWRIDYFITSKRLDDKIKEAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + GS HCPV L + L
Sbjct: 233 IHQQIFGSDHCPVELDIEL 251
>gi|317503938|ref|ZP_07961946.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
gi|315664964|gb|EFV04623.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
Length = 250
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 153/258 (59%), Gaps = 10/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRACV K+ + N D LQ+ + Q ++ F S+++
Sbjct: 1 MKFISWNVNGLRACVGKDFSQSF-ESLNADFFCLQETKMQAGQLELQFPGYTSYWNY--- 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+++PL V YGI G+ + GRVIT ++ +F +TVY PN+ +L+
Sbjct: 57 AEKKGYSGTAIYTRKEPLAVSYGI-GIDEHDHEGRVITLEYDKFFLVTVYTPNAQEELRR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y+ +L + +I+ GD+NV Q IDL NP N ++AG+T EER
Sbjct: 116 LDYRMTWEDAFQAYLH-QLDAKKPVIVCGDMNVAHQEIDLKNPKTNRRSAGFTDEERSKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL G D FR L+P E+ Y+YWS+R + AR N GWR+DY L+S++L +K I
Sbjct: 175 TQLLSNGFTDTFRTLHP-EQITYSYWSYRFR-AREKNAGWRIDYFLISDRLRPQLKGASI 232
Query: 310 RSDVQGSTHCPVVLRLSL 327
+++ GS HCPV L + +
Sbjct: 233 HTEIYGSDHCPVELDIDI 250
>gi|254555843|ref|YP_003062260.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|380031793|ref|YP_004888784.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|418274434|ref|ZP_12889932.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448820389|ref|YP_007413551.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
gi|254044770|gb|ACT61563.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|342241036|emb|CCC78270.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|376010000|gb|EHS83326.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448273886|gb|AGE38405.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
Length = 254
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 150/259 (57%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VK + V E + D +Q+ + Q ++ F Y+ +W
Sbjct: 1 MKLISWNVNGLRAAVK-HGFVTTFNELDADFFCVQETKLQAGQIELDFPG----YYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL V YGI GV + GRVIT ++ + +T Y PNSG +LK
Sbjct: 56 YAERKGYSGTAIFTKHEPLNVTYGI-GVPEFDDEGRVITLEYADYYVLTCYTPNSGGELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R W+ F YI S L +N +I GDLNV ++IDL N N +AG+T EER
Sbjct: 115 RLDYRQQWEDAFLTYINS-LSANKPLIFCGDLNVAHENIDLKNWRSNHHSAGFTDEERTK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL G D FRH YPD+ Y++WS+R AR NN GWR+DY + S+QL + + +
Sbjct: 174 FDRLLAAGYTDTFRHFYPDQTDIYSWWSYRGH-ARDNNSGWRIDYFITSQQLDSQLLNAR 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCPV L + L
Sbjct: 233 IHNEIFGSDHCPVELDIIL 251
>gi|323342310|ref|ZP_08082542.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463422|gb|EFY08616.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 252
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 154/261 (59%), Gaps = 15/261 (5%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEV---PESFRKSLSHYH 127
+K+ +WNVNGLRA +KK+ E I E + D++ LQ+ + Q ++ PE + Y
Sbjct: 2 MKLISWNVNGLRAVMKKD--FEGIFEAMDTDVLCLQETKMQAGQLDYDPEGY------YA 53
Query: 128 MFWIGSDKGQGGVGLLTKEKPLTVKYGI-PGVSNQRGRVITAKFKRFTFITVYVPNSGIK 186
+ KG G + T+ KPL V YGI N GRVIT ++ F + VY PNS +
Sbjct: 54 YYNYAEKKGYSGTAVYTRIKPLNVTYGIQEDEHNTEGRVITCEYDDFFLVCVYTPNSQPE 113
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
LK ID+RM W+ F +Y++ L +++ GDLNV + IDL NP N K G++ +ER
Sbjct: 114 LKRIDYRMQWEDDFREYLKM-LDETKPVVLCGDLNVAHKEIDLKNPSANRKNPGFSDQER 172
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
F LLD G +D+FR L+P+ Y++WS+R +AR N GWR+DY +VSE+L N I+
Sbjct: 173 EQFTNLLDAGFIDSFRELHPNAIDRYSWWSYR-ANARSRNTGWRIDYFVVSERLRNAIEA 231
Query: 307 CIIRSDVQGSTHCPVVLRLSL 327
I V GS HCPV+++L+
Sbjct: 232 ADILDQVLGSDHCPVMIKLNF 252
>gi|323344424|ref|ZP_08084649.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
gi|323094551|gb|EFZ37127.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
Length = 249
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 154/257 (59%), Gaps = 12/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRACV K+ + + D LQ+ + Q ++ +F + Y +W
Sbjct: 1 MKLISWNVNGLRACVGKDFETSF-KSLDADFFCLQETKMQAGQLDLAF----NGYQSYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G G + TK+ PL V YG+ G+ + GRVIT + + F +TVY PNS +L+
Sbjct: 56 YADKKGYSGTAIFTKQTPLNVTYGM-GIDEHDHEGRVITLETENFFLVTVYTPNSQDELR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F Y+ + L + +I+ GD+NV + ID+ NP N + AG+T EER
Sbjct: 115 RLEYRMRWEDDFKAYLLA-LDARKPVIVCGDMNVAHEEIDIKNPKTNRRNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL G +D FR LYP E+ Y++WS+R + AR N GWR+DY L+SE+L I D
Sbjct: 174 MTELLAGGFIDTFRTLYP-EQVTYSWWSYRFR-ARERNTGWRIDYFLISERLKERIADAK 231
Query: 309 IRSDVQGSTHCPVVLRL 325
I +D+ GS HCP+ L L
Sbjct: 232 IHTDIYGSDHCPIELDL 248
>gi|81428949|ref|YP_395949.1| exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
gi|78610591|emb|CAI55642.1| Exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
Length = 254
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 147/254 (57%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA +KK+ + + + D LQ+ + Q +V L YH ++
Sbjct: 1 MKFISWNVNGLRAVLKKDFMTTF-EQFDADFFCLQETKMQAGQV----ELDLPGYHQYFN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK +PL V YGI + GRVIT ++ +F IT Y PNS +LK
Sbjct: 56 YAEKKGYSGAAIFTKHEPLNVTYGIQQPEHDHEGRVITLEYPQFFLITCYTPNSQNQLKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y+Q +L + +I GDLNV ++IDL N N K+AG++ EER
Sbjct: 116 LDYRMTWENAFRAYVQ-QLGTQKPVIFCGDLNVAHEAIDLKNDRTNHKSAGFSDEERVQM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL +G D FR+ YPD+ Y++WS+R AR NN GWR+DY + S++L + D I
Sbjct: 175 TTLLQSGFTDTFRYFYPDQTDIYSWWSYRFH-ARDNNAGWRIDYFITSDELQPKLMDAKI 233
Query: 310 RSDVQGSTHCPVVL 323
+++ GS HCPV L
Sbjct: 234 HTEIYGSDHCPVEL 247
>gi|322378535|ref|ZP_08052983.1| exodeoxyribonuclease [Helicobacter suis HS1]
gi|321149049|gb|EFX43501.1| exodeoxyribonuclease [Helicobacter suis HS1]
Length = 306
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 156/257 (60%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNGLRAC++K C +++ + DI +Q+ + Q+++ F Y +FW
Sbjct: 52 MRLVSWNVNGLRACMQKGFC-DFLEQSQADIFCVQETKMQQEQASFCFEG----YEVFWN 106
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ K G GV L+K PL V YGI G++ + GRVIT ++ F + VY PN+ L
Sbjct: 107 SAQKKGYSGVLTLSKIAPLQVSYGI-GIAEHDTEGRVITCEYPNFYLVNVYTPNAQRGLL 165
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +R+ W++ F ++Q+ ++ + +++ GDLNV IDL NP N AG++ ER
Sbjct: 166 RLPYRLEWERSFRGFLQNLMQKKA-VVVCGDLNVAHNEIDLTNPQSNRYNAGFSDPERDA 224
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
FR+LL+ GL+D FRH YP + +YT+WS+ N+ AR N GWR+DY L S+ L + ++
Sbjct: 225 FRQLLNLGLIDTFRHFYPTKAESYTWWSYINQ-ARAKNIGWRIDYFLTSQTLNSCLQSAY 283
Query: 309 IRSDVQGSTHCPVVLRL 325
I + + GS HCPV L L
Sbjct: 284 IYNHILGSDHCPVGLDL 300
>gi|381150965|ref|ZP_09862834.1| exodeoxyribonuclease III [Methylomicrobium album BG8]
gi|380882937|gb|EIC28814.1| exodeoxyribonuclease III [Methylomicrobium album BG8]
Length = 254
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 150/259 (57%), Gaps = 8/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA V+ E + + D + LQ+ + Q D++ E + YH++
Sbjct: 1 MKIVSWNVNGIRA-VQGKGFAETLARLDADCLLLQETKAQVDQI-EKVTADIDGYHIYSN 58
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV L+++ +PL V I + R GRVI A+F+ F + VYVPNSG +L
Sbjct: 59 CAERKGYSGVSLMSRAEPLAVVKDIGIAEHDREGRVIAAEFEHFHLVNVYVPNSGQELVR 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEERRN 248
+D+R WD F Y+ +L S +I+ GD NV + ID+A P N K+AGYT E
Sbjct: 119 LDYRRTWDAEFLTYLL-KLESRKPVIVCGDFNVAHREIDIARPKANYNKSAGYTQAEIDG 177
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LD G VD FRH +PD AY++WSFR +AR NN GWR+DY L S LA+ +K
Sbjct: 178 FSRFLDAGFVDTFRHHHPDTV-AYSWWSFR-ANARANNIGWRIDYALASRALADKVKQAF 235
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +V GS HCPV + + L
Sbjct: 236 ILPEVTGSDHCPVGIEIDL 254
>gi|66817330|ref|XP_642518.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
gi|161784257|sp|P51173.2|APEA_DICDI RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=Class II apurinic/apyrimidinic(AP)-endonuclease
gi|60470608|gb|EAL68586.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
Length = 361
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 165/267 (61%), Gaps = 20/267 (7%)
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRC-----QEDEVPESFRKSLSH 125
++K+ +WNV G ++ + K EY+ +ENPD++ LQ+ + ++D++P+ +
Sbjct: 104 QMKIISWNVAGFKSVLSK-GFTEYVEKENPDVLCLQETKINPSNIKKDQMPKGYE----- 157
Query: 126 YHMFWIGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNS 183
YH F KG G G+LTK+KP + +GI G++ + GRVIT ++ +F + Y+PN+
Sbjct: 158 YH-FIEADQKGHHGTGVLTKKKPNAITFGI-GIAKHDNEGRVITLEYDQFYIVNTYIPNA 215
Query: 184 GIK-LKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGY 241
G + L+ +D+R+ WD F Y++ +L + II GDLNV IDL NP N K+AG+
Sbjct: 216 GTRGLQRLDYRIKEWDVDFQAYLE-KLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGF 274
Query: 242 TVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLA 301
T+EER +F L+ G VD++RH P +EG+YT+WS+ R N GWRLDY +VS++L
Sbjct: 275 TIEERTSFSNFLEKGYVDSYRHFNPGKEGSYTFWSYLG-GGRSKNVGWRLDYFVVSKRLM 333
Query: 302 NNIK-DCIIRSDVQGSTHCPVVLRLSL 327
++IK R+ V GS HCP+ + + L
Sbjct: 334 DSIKISPFHRTSVMGSDHCPIGVVVDL 360
>gi|375342925|gb|AFA54864.1| exodeoxyribonuclease III [uncultured Eggerthella sp. SMG5]
Length = 261
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/268 (38%), Positives = 153/268 (57%), Gaps = 19/268 (7%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNGLRA +KK ++ E + D+ ALQ+ + QE ++ L YH FW
Sbjct: 1 MRLVSWNVNGLRAVMKK-GFMDAFHELDADVFALQETKLQEGQI----EMDLPGYHQFWS 55
Query: 132 GSD-KGQGGVGLLTKEKPLTV--KYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++ KG G + KE+PL V + G+P + + GRV+ +F+++ + VY PN+ +L
Sbjct: 56 YAERKGYSGTAVFCKEEPLRVIHEVGVPELDTE-GRVVICEFEQYWLVNVYTPNAQSELA 114
Query: 189 AIDFRMIWDQHFYDYIQS---------ELRSNSNIIISGDLNVCLQSIDLANPDKNVKTA 239
+D RM WD F D + + + +++ GD NV Q IDL NP N
Sbjct: 115 RLDHRMAWDDRFRDICKGLEEGVLPDGQAGNAKPVVMCGDFNVAHQEIDLKNPRSNRGNP 174
Query: 240 GYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
G++ EER F LLD G +D FR+L P EGAY++WS+R AR NN GWR+DY LVSE
Sbjct: 175 GFSDEERAKFTCLLDAGFIDTFRYLNPATEGAYSWWSYRFH-ARANNAGWRIDYFLVSEA 233
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L ++ I S++ GS HCPV + L L
Sbjct: 234 LREKVQMANIYSEIMGSDHCPVSVELDL 261
>gi|336066887|ref|YP_004561745.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296833|dbj|BAK32704.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 251
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 154/261 (59%), Gaps = 15/261 (5%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEV---PESFRKSLSHYH 127
+K+ +WNVNGLRA +KK+ E I E + D++ LQ+ + Q ++ PE + Y
Sbjct: 1 MKLISWNVNGLRAVMKKD--FEGIFEAMDTDVLCLQETKMQAGQLDYDPEGY------YA 52
Query: 128 MFWIGSDKGQGGVGLLTKEKPLTVKYGI-PGVSNQRGRVITAKFKRFTFITVYVPNSGIK 186
+ KG G + T+ KPL V YGI N GRVIT ++ F + VY PNS +
Sbjct: 53 YYNYAEKKGYSGTAVYTRIKPLNVTYGIQEDEHNTEGRVITCEYDDFFLVCVYTPNSQPE 112
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
LK ID+RM W+ F +Y++ L +++ GDLNV + IDL NP N K G++ +ER
Sbjct: 113 LKRIDYRMQWEDDFREYLKM-LDETKPVVLCGDLNVAHKEIDLKNPSANRKNPGFSDQER 171
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
F LLD G +D+FR L+P+ Y++WS+R +AR N GWR+DY +VSE+L N I+
Sbjct: 172 EQFTNLLDAGFIDSFRELHPNAIDRYSWWSYR-ANARSRNIGWRIDYFVVSERLRNAIEA 230
Query: 307 CIIRSDVQGSTHCPVVLRLSL 327
I V GS HCPV+++L+
Sbjct: 231 ADILDQVLGSDHCPVMIKLNF 251
>gi|303229843|ref|ZP_07316620.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|303231217|ref|ZP_07317955.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302514124|gb|EFL56128.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302515473|gb|EFL57438.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 251
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 147/259 (56%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA V K ++ E + DI LQ+ + Q P L Y FW
Sbjct: 1 MKLISWNVNGLRAAVTK-GFIDSFNELDADIFCLQETKLQ----PHQIELELPGYEQFWN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + T+ KP+ V GI G+ +Q GRVITA++ F + Y PNS +L
Sbjct: 56 SAVKKGYSGTAVFTRIKPIAVTNGI-GIEEHDQEGRVITAEYDNFYLVCCYTPNSQRELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+ EL +I+ GDLNV IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTWEDAFRAYLL-ELDKKKPVILCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL++G D FR+LYPD Y++WS+ K AR N GWR+DY + S++L + IK+
Sbjct: 174 MTELLESGFTDTFRYLYPDAVDEYSWWSYMGK-ARDRNVGWRIDYFITSKRLDDKIKEAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + GS HCPV L + L
Sbjct: 233 IHQQIFGSDHCPVELDIEL 251
>gi|260909404|ref|ZP_05916112.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
gi|260636496|gb|EEX54478.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
Length = 249
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 150/258 (58%), Gaps = 14/258 (5%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
+K +WNVNGLRA V K+ E I + + D LQ+ + Q ++ F Y FW
Sbjct: 1 MKFISWNVNGLRAVVGKD--FENIFKSLDADFFCLQETKMQAGQLDLQF----DGYESFW 54
Query: 131 IGSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKL 187
+DK G G + T+ KPL V YGI G+ + GRVIT + F +TVY PNS +L
Sbjct: 55 NYADKKGYSGTAIYTRHKPLNVTYGI-GIDQHDHEGRVITLEMPTFFLVTVYTPNSQDEL 113
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+ +D+RM W+ F Y+ +L +I+ GD+NV Q IDL NP N + AG+T EER+
Sbjct: 114 RRLDYRMQWEDDFQAYLH-DLDKRKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEERQ 172
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
+LL G D FR YP EE Y++WS+R K AR N GWR+DY LVS++L + + D
Sbjct: 173 KMTQLLGAGFTDTFRWKYP-EEITYSWWSYRFK-ARERNTGWRIDYFLVSDRLQSEVLDA 230
Query: 308 IIRSDVQGSTHCPVVLRL 325
I +D+ GS HCPV L L
Sbjct: 231 KIHTDILGSDHCPVELEL 248
>gi|291545257|emb|CBL18366.1| exodeoxyribonuclease III [Ruminococcus champanellensis 18P13]
Length = 256
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 149/255 (58%), Gaps = 11/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC +K + +E+ D +Q+ + Q ++ + L Y+ +W
Sbjct: 1 MKLISWNVNGLRACREK-GFEAFFAQEDADFFCIQETKLQAGQI----QLELPGYNQYWH 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVK--YGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G G + TK PL+V+ +G+P N GRV+T ++ F + YVPNS +L
Sbjct: 56 YADKKGYSGTAVFTKHIPLSVQRDFGLP-AHNGEGRVLTLEYPDFYLVNAYVPNSKRELL 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ Y+ L + +I GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMEWEDALRQYLLG-LDARKPVIYCGDLNVAHREIDLKNPKSNRRNAGFTDEERGR 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LLD+G D FR LYPD GAYT+WS+ AR N GWR+DY +VS ++A ++D +
Sbjct: 174 LSTLLDSGFTDTFRLLYPDTAGAYTWWSYMFH-AREKNAGWRIDYFIVSNRIAPLVQDSL 232
Query: 309 IRSDVQGSTHCPVVL 323
I DV GS HCPV L
Sbjct: 233 IYKDVLGSDHCPVGL 247
>gi|403374064|gb|EJY86966.1| Exonuclease III [Oxytricha trifallax]
Length = 628
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 163/290 (56%), Gaps = 23/290 (7%)
Query: 50 PKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIR 109
P + D HE+ + ++ + WN+NGL+A + K ++ E+PDI+ +I+
Sbjct: 57 PSAKFHGDAKHEDFK----SDQLNIWVWNINGLQAVINKGMLDVFLQGEDPDIVCFNEIK 112
Query: 110 CQEDEVPESFRKSLSH------YHMFW--IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-- 159
PE + + H Y +W S KG G GL+TK KP+ V + I G+
Sbjct: 113 TD----PEKIKSASFHTKIPKDYEQYWNCSKSKKGYSGTGLITKIKPIKVTFDI-GIEEH 167
Query: 160 NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMI-WDQHFYDYI-QSELRSNSNIIIS 217
+Q GRVITA+F +F + VYVPNSG L+ + +R WD+ F+DY+ ++ + +N +I++
Sbjct: 168 DQEGRVITAEFSKFVLVAVYVPNSGDDLRRLSYRTQEWDKAFFDYLDRTRIETNKPLILT 227
Query: 218 GDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSF 277
GDLNV +D+ + K A YT EER++F ++ G +D FRHLYPD+ YTY+S
Sbjct: 228 GDLNVARNELDVFDTKGKDKVACYTPEERKSFESFINRGYIDTFRHLYPDKR-EYTYFSA 286
Query: 278 RNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
R + ++ NKGWR+DY +V + N + D I D GS H PV L L L
Sbjct: 287 RFNN-KVTNKGWRIDYFVVHQDDINMVTDVTIHKDYNGSDHVPVCLHLDL 335
>gi|139439406|ref|ZP_01772847.1| Hypothetical protein COLAER_01867 [Collinsella aerofaciens ATCC
25986]
gi|133775185|gb|EBA39005.1| exodeoxyribonuclease III [Collinsella aerofaciens ATCC 25986]
Length = 272
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/270 (39%), Positives = 152/270 (56%), Gaps = 22/270 (8%)
Query: 75 STWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGS 133
++WNVNGLRA +KK+ I +E + DI+ALQ+ + QE +V L YH W +
Sbjct: 8 ASWNVNGLRAVLKKDPSFIQIAQELDVDILALQETKLQEGQVD----IDLPGYHQTWSYA 63
Query: 134 D-KGQGGVGLLTKEKPLTV-------KYGIPG-------VSNQRGRVITAKFKRFTFITV 178
+ KG G + ++++PL V Y G + GRV +F +F F+ V
Sbjct: 64 ERKGYSGTAVFSRQEPLRVLRADALLPYAGGGEAAVLVAQAATEGRVCALEFDKFWFVDV 123
Query: 179 YVPNSGIKLKAIDFRMIWDQHFYDYIQS-ELRSNSNIIISGDLNVCLQSIDLANPDKNVK 237
Y PN+ +L ID RM WD + ++ + E + ++ GD NV + IDL NP N
Sbjct: 124 YTPNAQNELARIDVRMAWDDAYRGFLNALERETGKPVVTCGDFNVAHEEIDLKNPKSNRG 183
Query: 238 TAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVS 297
AG++ EER F ELL+ G D +R PD EG Y++WS+R +AR NN GWR+DY LVS
Sbjct: 184 NAGFSDEERGKFTELLNAGFTDTWRAANPDVEGVYSWWSYR-FNARKNNAGWRIDYFLVS 242
Query: 298 EQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ +A N++D IR D+ GS HCPV L L L
Sbjct: 243 DSIAANVRDTGIRGDIFGSDHCPVTLTLEL 272
>gi|258645453|ref|ZP_05732922.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
gi|260402804|gb|EEW96351.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
Length = 254
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 150/259 (57%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRAC+KK ++ E + D LQ+ + Q D++ L Y+ +W
Sbjct: 4 LKYISWNVNGLRACMKK-GFMQSFKELDADCFCLQETKLQPDQI----ELDLPGYYQYWN 58
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G L TK KPL+V YGI G+ +Q GRVITA F +T Y PNS L
Sbjct: 59 SAVKKGYSGTALFTKIKPLSVTYGI-GMEEHDQEGRVITADFNDHCLVTCYTPNSQRGLA 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +L +I+ GDLNV + IDLANP N AG+T +ER
Sbjct: 118 RLTYRMKWEDDFKKYLL-DLSKKKPVILCGDLNVAHEEIDLANPASNHMNAGFTDDERNK 176
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
ELL G D+FR+L+ D++ AY++WS+ KS R N GWR+DY LVS+ L IK
Sbjct: 177 MTELLSDGFTDSFRYLHQDKKDAYSWWSYFAKS-RERNIGWRIDYFLVSDILQPRIKAAE 235
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S + GS HCPV L + +
Sbjct: 236 IHSSILGSDHCPVELDIEI 254
>gi|56963720|ref|YP_175451.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
gi|56909963|dbj|BAD64490.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
Length = 260
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 150/258 (58%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRACVKK +++ + + D+ LQ+ + Q+ ++ L Y +W
Sbjct: 1 MKFVSWNVNGLRACVKK-GFLDFFQQVDADVFCLQETKLQKGQI----SLELPGYEQYWN 55
Query: 132 GSD-KGQGGVGLLTKEKPLTVKYGIPG-VSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
++ KG G + TK PL+V YGI GRVIT +F+ + +T+Y PN+ L
Sbjct: 56 DAERKGYSGTAIFTKHSPLSVTYGIGDHFPENEGRVITLEFETYYVVTMYTPNAKRDLSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +R+ W++ +Y+ + L + ++ GDLNV Q ID+ N NV +G+T EER F
Sbjct: 116 LPYRLQWEKAAREYL-TLLATQKPVVFCGDLNVAHQPIDVRNDRANVGNSGFTDEERAEF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL+ G VD FRH YPD+E A+T+WS+ + R N GWR+DY L+S L + D I
Sbjct: 175 GKLLEAGFVDTFRHFYPDDEDAFTWWSYM-ANVRARNIGWRIDYFLISRALMPYLVDASI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
S V GS HCP+ L L L
Sbjct: 234 HSSVLGSDHCPIELCLDL 251
>gi|381395703|ref|ZP_09921398.1| exodeoxyribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379328582|dbj|GAB56531.1| exodeoxyribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 255
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/260 (40%), Positives = 160/260 (61%), Gaps = 10/260 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA VKK+ ++ + + D++ LQ+ + Q+++V E+ L YH+F
Sbjct: 1 MKLVSWNVNGIRAAVKKDF-LQSLAAMDCDVLCLQETKAQDEQVIEAL-CDLHGYHIFTN 58
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G ++T+ +P+ V I G+S +Q GRV+ A+F F +TVY PNSG +LK
Sbjct: 59 SAVKKGYSGTSVITRVEPIDVTKDI-GISEHDQEGRVLCAEFSDFYLVTVYTPNSGSELK 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEERR 247
+ +R WD F YI++ L + ++I GDLN + +DLA P N K+AGYT +E
Sbjct: 118 RLGYRGQWDADFLTYIKA-LEAKKPVVICGDLNAAHKDLDLARPKPNYNKSAGYTQQEID 176
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
L+ G +D+FRH++PD Y++WS+R AR N GWR+DY LVS LA NI D
Sbjct: 177 GIDNLIAAGFIDSFRHVHPDTV-KYSWWSYR-AGARERNVGWRIDYFLVSSALAANISDA 234
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
I D+ GS HCPV ++L+
Sbjct: 235 EIYDDIHGSDHCPVSVKLAF 254
>gi|288927024|ref|ZP_06420917.1| exodeoxyribonuclease III [Prevotella buccae D17]
gi|288336198|gb|EFC74586.1| exodeoxyribonuclease III [Prevotella buccae D17]
Length = 249
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 148/257 (57%), Gaps = 12/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
++ +WNVNGLRACV K E + D LQ+ + QE ++ F Y +W
Sbjct: 1 MRFISWNVNGLRACVSK-GFEESFKALDADFFCLQETKMQEGQLNLQFEG----YDSYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK KPL V YG+ G+ + GRVIT + + F ITVY PNS +L+
Sbjct: 56 YAEKKGYSGTAIYTKHKPLNVTYGL-GIEEHDHEGRVITLEMEDFYLITVYTPNSQDELR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F YIQ L + +I+ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLDYRMTWEDDFLKYIQG-LDAKKPVIVCGDLNVAHEEIDLKNPKTNRRNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
L++G D+FR+ YP E+ Y++WS+R AR N GWR+DY L+S +L + + D
Sbjct: 174 MTITLNSGFTDSFRYKYP-EQVTYSWWSYRFH-AREKNAGWRIDYFLISNRLRDRLVDAK 231
Query: 309 IRSDVQGSTHCPVVLRL 325
I ++V GS HCPV L L
Sbjct: 232 IHTEVYGSDHCPVELDL 248
>gi|366053865|ref|ZP_09451587.1| exodeoxyribonuclease III [Lactobacillus suebicus KCTC 3549]
Length = 256
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 152/259 (58%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRA V + ++ + + D +Q+ + Q ++ K +Y+ +W
Sbjct: 1 MKFISWNVNGLRAAVT-HGFMDTFNQLDADFFCVQETKLQLGQID---LKLPDNYYQYWN 56
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G G + TK KPL GI G+ + GRVIT ++ F IT Y PNSG +LK
Sbjct: 57 YADKKGYSGTAIFTKHKPLNASLGI-GIDEFDHEGRVITLEYPSFYLITCYTPNSGQQLK 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+DFR W++ F DYI ++L + ++I GDLNV ++IDL NP N AG+T EER +
Sbjct: 116 RLDFRQNWNKAFLDYI-NQLSAKKDVIFCGDLNVAHETIDLKNPSSNHHAAGFTDEERND 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL++ VD +RH YP+ Y++WS+R S R N GWR+DY + S L + + D
Sbjct: 175 FTHLLESNFVDTYRHFYPEVTEQYSWWSYRFHS-RDRNAGWRIDYFVTSTGLTDQLVDAK 233
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I S++ GS HCPV L ++
Sbjct: 234 IHSEIFGSDHCPVELTANI 252
>gi|384136257|ref|YP_005518971.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290342|gb|AEJ44452.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 260
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 140/257 (54%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRACV K A + Y + D+ +Q+ + Q ++ ++ Y FW
Sbjct: 1 MKFVSWNVNGLRACVNKGAFLPYFESVDADVFCVQETKLQAGQIQLPIGEA---YQQFWN 57
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + T+ PL V+YG + GR+IT +F F +TVY PN+ L +
Sbjct: 58 YAERKGYSGTAVFTRMPPLDVRYGFGNGVDPEGRIITLEFPSFYVVTVYTPNAKRDLSRL 117
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+R+ W+ F Y+ + L +I GDLNV Q ID+ N N +G+T EER
Sbjct: 118 PYRLEWEDAFRAYLCA-LDREKPVIACGDLNVAHQEIDIKNAKSNRGNSGFTDEERAKMT 176
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
ELLD G VD FR LYPD YT+WS R N GWR+DY LVSE+L + I D I
Sbjct: 177 ELLDAGFVDTFRALYPDVTDKYTWWS-NMPRVRERNIGWRIDYFLVSERLRDCILDARID 235
Query: 311 SDVQGSTHCPVVLRLSL 327
V GS HCPVVL ++L
Sbjct: 236 DHVLGSDHCPVVLEMAL 252
>gi|258648040|ref|ZP_05735509.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
gi|260851895|gb|EEX71764.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
Length = 250
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/257 (40%), Positives = 151/257 (58%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V + + D LQ+ + QE ++ +F Y +W
Sbjct: 1 MKFISWNVNGLRA-VDGKGFRDIFRAIDADFFCLQETKMQEGQLDIAF----DGYESYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK KPL+V+ G+ G+ + GRVIT + F + VY PNS +L+
Sbjct: 56 YAEKKGYSGTAIFTKHKPLSVQIGL-GIDEHDHEGRVITLELDDFYLVCVYTPNSQDELR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RMIW++ F ++ +L ++ +I+ GD+NV Q IDL NP N + AG+T EER
Sbjct: 115 RLDYRMIWEEAFQAHLH-KLDAHKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LL G +D FR+ +PD GAY++WS+R + AR N GWR+DY LVSE+L + +
Sbjct: 174 MTQLLSNGFIDTFRYFHPDLTGAYSWWSYRFR-AREKNTGWRIDYFLVSERLKPRLVEAN 232
Query: 309 IRSDVQGSTHCPVVLRL 325
I +D+ GS HCPV L L
Sbjct: 233 IHNDIMGSDHCPVELIL 249
>gi|345022885|ref|ZP_08786498.1| exodeoxyribonuclease III Xth [Ornithinibacillus scapharcae TW25]
Length = 252
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 151/258 (58%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV+K ++Y E + DI +Q+ + QE ++ L+ YH +W
Sbjct: 1 MKLVSWNVNGLRACVRK-GFLDYFNEIDADIFCIQETKLQEGQI----ELELNGYHQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KP++VKYG+ +Q GR++T +F+ F I VY PNS L
Sbjct: 56 YAEKKGYSGTAVFTKFKPISVKYGLSNEESQVEGRILTLEFENFFLINVYTPNSQRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D R+ W+ +++ + R +++ GDLNV + ID+ N N +G+T EER
Sbjct: 116 LDVRLEWEDVLLEHVLAHDRIKP-VVLCGDLNVAHREIDIRNYKSNYGNSGFTDEEREKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L+ G +D R+ +PD EG YT+WS+ K+ R N GWR+DY +VSE+L + D
Sbjct: 175 TRFLNAGFIDTLRYFHPDTEGIYTWWSYM-KTVRERNIGWRIDYFIVSERLREKLIDSKA 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
+ + GS HCP+VL +SL
Sbjct: 234 DTAIFGSDHCPIVLDISL 251
>gi|288556715|ref|YP_003428650.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
gi|288547875|gb|ADC51758.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
Length = 251
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 151/258 (58%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACVKK +++ E+N DI LQ+ + QE ++ L YH FW
Sbjct: 1 MKLISWNVNGLRACVKK-GFLDFFHEQNADIFCLQETKLQEGQI----ELELDGYHQFWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGV-SNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK+KP++V+YG+ + S GR+IT +F F + VY N+ L
Sbjct: 56 YALKKGYSGTAVFTKQKPISVRYGVGELESEDEGRIITLEFDSFYLVNVYTINAKRDLSR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ R+ W+ +Y+ +L + ++ GDLNV +DL N N +G+T+EER
Sbjct: 116 LPERLEWEDALKEYLL-DLDRHKPVVYCGDLNVAHAEVDLKNARSNHGNSGFTLEERGKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL++G +D+FR+LYP+ A+T+WS+ + R N GWR+DY +VS QL I + I
Sbjct: 175 TTLLESGFIDSFRYLYPERTDAFTWWSYM-RDVRARNIGWRIDYFIVSTQLKEKINEASI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
++V GS HCP+ L L +
Sbjct: 234 YAEVLGSDHCPIGLELDI 251
>gi|404485198|ref|ZP_11020397.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
gi|404338985|gb|EJZ65428.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
Length = 252
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 147/258 (56%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC K + + + D LQ+ + Q ++ F Y +W
Sbjct: 2 LKLISWNVNGLRACYDK-GFTDIFRQLDADFFCLQETKMQAGQLDLQF----DGYQSYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+ +P++V YG+ + R GR+IT + + F + VY PNS LK
Sbjct: 57 YAEKKGYSGTAVFTRLQPISVSYGMDRTEHDREGRIITLEMEDFFLVNVYTPNSQEGLKR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F +++ +L++ +I+ GDLNV Q IDL NP N K AG+T EER F
Sbjct: 117 LEYRMTWEDDFLHFLK-QLKTQKPVIVCGDLNVAHQEIDLKNPKTNRKNAGFTDEERYKF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL G D FR+ YP+++ Y++WS+R K AR N GWR+DY L S L + I
Sbjct: 176 TQLLSAGFTDTFRYFYPNQKDIYSWWSYRFK-AREKNAGWRIDYFLASASLNEKLCSAKI 234
Query: 310 RSDVQGSTHCPVVLRLSL 327
+++ GS HCPV L + L
Sbjct: 235 HTEIFGSDHCPVELEIDL 252
>gi|350268411|ref|YP_004879717.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
gi|348593251|dbj|BAK97211.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
Length = 250
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 149/258 (57%), Gaps = 10/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC+ K +++ + D++ LQ+ + + PE L Y FW
Sbjct: 1 MKLISWNVNGLRACIGKGF-LDFCKSADADVICLQETKMK----PEQADFDLPGYEKFWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+DK G G + T+ PL + Y G GRVITA+F+ F + Y PN+ +L+
Sbjct: 56 SADKPGYSGTAVFTRVPPLNMTYDFGGDEYRHEGRVITAEFEEFYLVCCYTPNAQDELRR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
ID+RM W+ F DY++ EL +++ GDLNV + IDL NP N AG++ +ER
Sbjct: 116 IDYRMRWEDDFRDYLR-ELDRVKPVVLCGDLNVAHEEIDLKNPKTNRGHAGFSDQERGKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELL TG D FR LYP E+ AY++WS+R + AR N GWR+DY +VS + + D +I
Sbjct: 175 TELLSTGFSDTFRTLYP-EKIAYSWWSYRFR-AREKNAGWRIDYFIVSRRFQEKVVDSLI 232
Query: 310 RSDVQGSTHCPVVLRLSL 327
V GS HCPV L L L
Sbjct: 233 CDQVFGSDHCPVGLELEL 250
>gi|168036056|ref|XP_001770524.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678232|gb|EDQ64693.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 363
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 158/272 (58%), Gaps = 21/272 (7%)
Query: 72 VKVSTWNVNGLRACVKKNAC--------VEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
VK+ +WNVNGLRA +K+ E+ D++ LQ+ + QE +V + RKSL
Sbjct: 97 VKLLSWNVNGLRALLKEKGAEHEQGSMIARLAAREDFDVLCLQETKLQEKDVAD-IRKSL 155
Query: 124 --SHYHMFWIGSDK--GQGGVGLLTKEKPLTVKYGIPGVSN--QRGRVITAKFKRFTFIT 177
SH W S G G ++++ KP++V+YG+ G+ N Q GR+IT +F F F+
Sbjct: 156 LASHEVSLWGCSTSKLGYSGTAIISRIKPISVQYGL-GIPNHDQEGRLITCEFDTFYFVV 214
Query: 178 VYVPNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV 236
YVPNSG KL+ + +R WD +++ EL +I++GDLN + ID+ +P N
Sbjct: 215 SYVPNSGAKLERLAYRTQEWDVALSSHLR-ELEKKKPVILTGDLNCAHEDIDINDPAGNR 273
Query: 237 KTAGYTVEERRNFR-ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHL 295
K+AG+T EER +F+ LD G VD FR +P+ AYTYW +R S R NKGWRLDY L
Sbjct: 274 KSAGFTDEERESFKTNFLDHGFVDTFRKQHPNAV-AYTYWGYRTAS-RPKNKGWRLDYFL 331
Query: 296 VSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
VS L+ N+ D DV GS HCP+ L L +
Sbjct: 332 VSGSLSENVHDSYTIPDVGGSDHCPIALILKI 363
>gi|329895423|ref|ZP_08271004.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
gi|328922306|gb|EGG29652.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
Length = 256
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 158/259 (61%), Gaps = 9/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNG+RA KK+ E PD++ LQ+ + Q+D+V E+ + Y +F
Sbjct: 1 MRLVSWNVNGIRAVTKKD-FFESFERMAPDVLCLQETKAQDDQVLEALTELDPAYKVFSN 59
Query: 132 GSDK-GQGGVGLLTKEKPLTVK--YGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G G ++T+ +P++V G+P + GRV+ A+F+ F +TVY PNSG +LK
Sbjct: 60 SAEKKGYSGTAIITRVEPISVTADMGMPE-HDTEGRVLCAEFETFYLVTVYTPNSGSELK 118
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEERR 247
+D+R WD+ F DY+++ L +++ GDLNV Q IDLA P +N K+AGY E
Sbjct: 119 RLDYRQSWDKDFADYLKT-LEQTKPVVVCGDLNVAHQDIDLARPKQNYNKSAGYMQAEID 177
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
F L+D G VD +RH P+ Y++WS+R AR N GWR+DY LV+ +L +++
Sbjct: 178 GFDRLVDLGFVDTYRHFNPN-TAKYSWWSYR-AGAREKNIGWRIDYFLVTPELTSSLTGA 235
Query: 308 IIRSDVQGSTHCPVVLRLS 326
I +DV GS HCPV + +S
Sbjct: 236 EIYNDVYGSDHCPVGIDIS 254
>gi|389575850|ref|ZP_10165878.1| exodeoxyribonuclease III [Eubacterium cellulosolvens 6]
gi|389311335|gb|EIM56268.1| exodeoxyribonuclease III [Eubacterium cellulosolvens 6]
Length = 250
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 151/260 (58%), Gaps = 14/260 (5%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K +WNVNGLRAC+KK+ + E + D +Q+ + QE ++ PE + + ++
Sbjct: 1 MKFISWNVNGLRACMKKDFDKTF-RELDADFFCIQESKLQEGQIEYCPEGWNEYWNY--- 56
Query: 129 FWIGSDKGQGGVGLLTKEKPLTVKYGI-PGVSNQRGRVITAKFKRFTFITVYVPNSGIKL 187
KG G + K+ L V YGI + GRVIT ++ F +TVY PNS L
Sbjct: 57 ---AEKKGYSGTAIWAKKPALQVTYGIGEEEHDHEGRVITLEYDTFFLVTVYTPNSQDGL 113
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
K +D+RM W+ F Y+ +L +I+ GDLNV + IDL NP N K AG+T EER
Sbjct: 114 KRLDYRMTWEDSFRAYL-GKLDEKKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFTDEERG 172
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
F ELLD G D+FR+L+P E+ Y++WS+R AR N GWR+DY L SE++ I+
Sbjct: 173 KFTELLDAGFTDSFRYLHP-EDVEYSWWSYRF-HAREKNAGWRIDYFLTSERVKEKIEQA 230
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
+I ++ GS HCPV L +S+
Sbjct: 231 VIHQEIFGSDHCPVELDISI 250
>gi|307566413|ref|ZP_07628850.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
gi|307344885|gb|EFN90285.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
Length = 249
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 151/257 (58%), Gaps = 12/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRACV KN E+ L + D LQ+ + QE ++ SF Y +W
Sbjct: 1 MKFISWNVNGLRACVGKNFKEEF-LALDADFFCLQETKMQEGQLDLSF----PGYESYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G G + TK PL+V GI G+ + GRVIT + F +TVY PNS +LK
Sbjct: 56 YADKKGYSGTAIFTKHTPLSVSRGI-GIEEHDHEGRVITLEMADFYLVTVYTPNSQDQLK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ S L + +I+ GD+NV + IDL NP N AG++ EER
Sbjct: 115 RLPYRMQWETDFQSYLHS-LDKHKPVIVCGDMNVAHEEIDLKNPKSNHFNAGFSDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LL G D FR LYP E+ Y++WS+R K AR N GWR+DY L+S++L ++++
Sbjct: 174 MTTLLSNGFTDTFRFLYP-EQVTYSWWSYRFK-AREKNIGWRIDYFLISDRLRESLEEAK 231
Query: 309 IRSDVQGSTHCPVVLRL 325
I +++ GS HCPV + L
Sbjct: 232 IHTEILGSDHCPVEIIL 248
>gi|339448653|ref|ZP_08652209.1| exodeoxyribonuclease III Xth [Lactobacillus fructivorans KCTC 3543]
Length = 256
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 153/250 (61%), Gaps = 8/250 (3%)
Query: 76 TWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK 135
+WNVNGLR+ VKKN E+ E + D +Q+ R E+++ + +Y+ +W +++
Sbjct: 5 SWNVNGLRSAVKKN-FYEFFNEIDADFFNVQETRVHENDIA---LEVPGNYYQYWDSAER 60
Query: 136 -GQGGVGLLTKEKPLTVKYGIPGV-SNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFR 193
G GV TK K V YG+ G ++ GR +T ++ F I YVPNSG +L+ +D+R
Sbjct: 61 PGYAGVTTFTKHKAQNVIYGVDGTDTDVEGRCLTLEYPDFYLINTYVPNSGEELQRLDYR 120
Query: 194 MIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELL 253
+ WDQ F ++ ++L +II GD++V Q ID+ +P+++ AGYT +ER +F LL
Sbjct: 121 LDWDQKFITFV-NKLTGTKPVIIGGDMSVAYQPIDIDDPEEDHHKAGYTQQERDDFGRLL 179
Query: 254 DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDV 313
+G VD FR L+P + GAYT+WS+R R ++GWR+DY LVS+ + N++ + I +V
Sbjct: 180 ASGFVDTFRALHPHQSGAYTWWSYR-YDERARDRGWRMDYFLVSDSIQNDVAESNILGNV 238
Query: 314 QGSTHCPVVL 323
GS H P+ L
Sbjct: 239 MGSDHAPIQL 248
>gi|356498631|ref|XP_003518153.1| PREDICTED: apurinic endonuclease-redox protein-like [Glycine max]
Length = 507
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 107/268 (39%), Positives = 163/268 (60%), Gaps = 13/268 (4%)
Query: 69 TTKVKVSTWNVNGLRACVKKN--ACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHY 126
T VK+ +WNVNGLRA +K + ++ E+ D++ LQ+ + QE ++ E ++ + Y
Sbjct: 244 TKFVKLLSWNVNGLRALLKLEGFSALQLAQREDFDVLCLQETKLQEKDIEEIKQRLIDGY 303
Query: 127 -HMFWIGS--DKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYVP 181
+ FW S G G ++++ KPL+V+YG+ G+ + GR++TA+F F I YVP
Sbjct: 304 ANSFWTCSVSKLGYSGTAIISRIKPLSVRYGL-GIPDHDSEGRLVTAEFDTFYLICGYVP 362
Query: 182 NSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
NSG LK + +R+ WD +Y++ EL + +I++GDLN + ID+ NP N ++AG
Sbjct: 363 NSGDGLKRLSYRVTEWDPSLSNYLK-ELEKSKPVILTGDLNCAHEEIDIYNPAGNKRSAG 421
Query: 241 YTVEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T EER++F + L G VD FR +P G YTYW +R+ R N+GWRLDY LVSE
Sbjct: 422 FTDEERKSFAKNFLSRGFVDTFRRQHPGVIG-YTYWGYRH-GGRKFNRGWRLDYFLVSES 479
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+A+ + D I DV GS HCP+ L + L
Sbjct: 480 IADKVHDSYILPDVTGSDHCPIGLVVKL 507
>gi|306820340|ref|ZP_07453979.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|402309414|ref|ZP_10828407.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
gi|304551669|gb|EFM39621.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|400372381|gb|EJP25325.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
Length = 251
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 147/258 (56%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA +K E + D LQ+I+ QE ++ + Y+ +W
Sbjct: 1 MKFVSWNVNGLRAAREK-GFDEIFKNFDADFFCLQEIKLQEGQID----MDMDGYYSYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+ +P+ V YG+ + GR+IT ++ F TVY PNS +L
Sbjct: 56 YAKRKGYSGTAIFTRIEPIDVFYGLGKEEHDDEGRLITLEYPEFYVSTVYTPNSKQELLR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R W+ F ++ ++ L + +II GD+NV + IDL NP N K G+T EER F
Sbjct: 116 LDYRQEWEDEFREFFKN-LDAKKPVIICGDMNVAHKEIDLKNPKTNRKNPGFTDEEREKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LLD G D FR+ YPD+E Y++WS+R +AR NN GWR+DY LVS++L + I
Sbjct: 175 TLLLDAGFTDTFRYFYPDKENEYSWWSYRF-NARKNNTGWRIDYFLVSDRLQEKLTAASI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
DV GS HCPV + LSL
Sbjct: 234 HQDVFGSDHCPVSVELSL 251
>gi|323141860|ref|ZP_08076721.1| exodeoxyribonuclease III [Phascolarctobacterium succinatutens YIT
12067]
gi|322413607|gb|EFY04465.1| exodeoxyribonuclease III [Phascolarctobacterium succinatutens YIT
12067]
Length = 236
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 145/238 (60%), Gaps = 9/238 (3%)
Query: 92 VEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSD-KGQGGVGLLTKEKPLT 150
E++ E PDI+ LQ+ + Q ++ F Y +W ++ KG G + TK KPL
Sbjct: 6 AEFLQEAAPDIICLQETKMQREQADFVF----PGYEEYWNSAERKGYSGTAVFTKVKPLA 61
Query: 151 VKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELR 209
V YG+ + + GRVIT +F F +TVY PNS L +D+RM+W+ F Y+Q EL
Sbjct: 62 VTYGLGQEEHDKEGRVITLEFASFYLVTVYTPNSKDGLARLDYRMVWEDVFRAYLQ-ELD 120
Query: 210 SNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEE 269
+ +++ GDLNV + IDL NP N + AG+T EER FREL G D+FR+L+P EE
Sbjct: 121 AKKPVVVCGDLNVAAEEIDLKNPKTNRRNAGFTDEERAKFRELKAAGFTDSFRYLHP-EE 179
Query: 270 GAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
Y++WS+R K AR N GWR+DY +VS+++A+ ++ I ++V GS HCPV + L +
Sbjct: 180 VKYSWWSYRFK-AREKNAGWRIDYFVVSDRIADKLQSAEIHNEVFGSDHCPVSIELDV 236
>gi|145529087|ref|XP_001450332.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417943|emb|CAK82935.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 112/283 (39%), Positives = 169/283 (59%), Gaps = 21/283 (7%)
Query: 55 KFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQED- 113
KFD+ G + T VK+S+WN+NG+RA K + V+Y+ + DI+ L +++ +D
Sbjct: 74 KFDL----GDGRFSTPTVKISSWNINGIRAVTKHESAVQYLNDSKFDIICLNELKADQDV 129
Query: 114 ----EVPESFRKSLSHYHMF--WIGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRV 165
+ F K HY ++ + S G GV + +K KPL+VK I GV +Q GR
Sbjct: 130 FDKENLGAKFGK---HYFLYLNFCKSKAGYSGVAIASKVKPLSVKCDI-GVDKHDQEGRT 185
Query: 166 ITAKFKRFTFITVYVPNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCL 224
+TA+F++F ++ YVPNSG KL+ +D+R WD F +Y++ LR I+ GDLNV
Sbjct: 186 LTAEFEQFYLVSCYVPNSGQKLERLDYRTKEWDIDFQNYLEG-LRKKKPTILCGDLNVAH 244
Query: 225 QSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARL 284
IDL+NP N KTAG+T++ER F L G VD+FRHL+P +E Y+++S R+ S R
Sbjct: 245 HEIDLSNPAGNKKTAGFTLQERDQFSNYLQKGWVDSFRHLHP-KEVKYSFFSARSNS-RS 302
Query: 285 NNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
NKGWRLDY +++++ ++ I I V+GS H P+ + L
Sbjct: 303 QNKGWRLDYFIINKEASDAITVSDINLTVEGSDHVPIECEVDL 345
>gi|373501432|ref|ZP_09591789.1| exodeoxyribonuclease [Prevotella micans F0438]
gi|371949088|gb|EHO66962.1| exodeoxyribonuclease [Prevotella micans F0438]
Length = 250
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 150/258 (58%), Gaps = 10/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V K VE D LQ+ + Q ++ SF Y +W
Sbjct: 1 MKFISWNVNGLRAVVGK-GFVESFETFGADFFCLQETKMQAGQLDISF----PGYESYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KPL+V YG+ + GR+IT + ++F +TVY PNS L+
Sbjct: 56 YAEKKGYSGTAIFTKYKPLSVTYGMNIDEHDHEGRIITLEMEQFFLVTVYTPNSQDGLRR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y+ S L +I+ GD+NV + IDL NP N + AG+T EER+
Sbjct: 116 LDYRMQWESDFLAYLTS-LDCRKPVIVCGDMNVAHEEIDLKNPQNNRRNAGFTDEERQKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL +G VD FR L+P+E+ Y++WS+R K AR N GWR+DY L+SE+L + + I
Sbjct: 175 TTLLASGFVDTFRTLHPEEQ-KYSWWSYRFK-AREKNVGWRIDYFLISERLVPQLVEATI 232
Query: 310 RSDVQGSTHCPVVLRLSL 327
+++ GS HCPV L L++
Sbjct: 233 HAEIMGSDHCPVELVLNI 250
>gi|421077946|ref|ZP_15538906.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
gi|392523930|gb|EIW47096.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
Length = 250
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 146/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRAC+ K + + DI +Q+ + P+ L Y +W
Sbjct: 1 MKLISWNVNGLRACLSK-GFEGFFNTADADIFCIQETKMH----PDQAEIGLIGYEKYWN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG G + T+ PL+V YG+ +Q GR+IT +F+ F + VY PNS +L
Sbjct: 56 SAVKKGYSGTAVFTRITPLSVIYGLNIEEHDQEGRLITLEFENFFLVNVYTPNSKRELLR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F Y+ + L + +II GD+NV Q ID+ NP N + AG+T EER
Sbjct: 116 LDYRMRWEDEFRTYLIT-LNQSKPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL+ G D FRH+YPD+ AYT+WS+ +AR N GWR+DY LVS L IK+ I
Sbjct: 175 TALLEAGFTDTFRHIYPDKIDAYTWWSYM-MNARARNIGWRIDYFLVSNTLREAIKEATI 233
Query: 310 RSDVQGSTHCPVVLRL 325
DV GS HCP+ L +
Sbjct: 234 YPDVMGSDHCPIGLEI 249
>gi|357041996|ref|ZP_09103703.1| exodeoxyribonuclease [Prevotella histicola F0411]
gi|355370010|gb|EHG17399.1| exodeoxyribonuclease [Prevotella histicola F0411]
Length = 249
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 153/256 (59%), Gaps = 10/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K+ ++ + + D +Q+ + Q+ ++ SF Y +W
Sbjct: 1 MKLISWNVNGLRACVGKDFEQQF-KDLDADFFCIQETKMQDGQLDISF----PGYESYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KPL+V YGI + GRVIT + F +TVY PNS L+
Sbjct: 56 YAEKKGYSGTAIFTKHKPLSVSYGIDIEEHDHEGRVITLEMDDFFLVTVYTPNSQDGLRR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++RM W+ F Y+ +L + +I+ GD+NV + ID+ NP N + AG+T EER
Sbjct: 116 LEYRMKWEDDFQAYLH-KLDAKKPVIVCGDMNVAHEEIDIKNPKTNRRNAGFTDEEREKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL+ G +D FR LYP E+ Y++WS+R + AR N GWR+DY L+S++L + + D I
Sbjct: 175 TQLLNNGFIDTFRSLYP-EQVTYSWWSYRFR-ARERNTGWRIDYFLISDRLKDRLVDAKI 232
Query: 310 RSDVQGSTHCPVVLRL 325
+++ GS HCPV + L
Sbjct: 233 HTEIMGSDHCPVEVDL 248
>gi|268569472|ref|XP_002640531.1| C. briggsae CBR-EXO-3 protein [Caenorhabditis briggsae]
Length = 290
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 115/280 (41%), Positives = 166/280 (59%), Gaps = 13/280 (4%)
Query: 52 KQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQ 111
K+VK ++GS+K + K WNV GLRACVKK+ E IL+E PDI+ L + +C+
Sbjct: 20 KKVKKLAPADDGSQKSW----KFVCWNVAGLRACVKKSDFSE-ILKEQPDIVFLGETKCK 74
Query: 112 E--DEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITA 168
E +E+ E F K S + + G GVG+L+K PL + GI + GR+I A
Sbjct: 75 EWPNEIEEKF-KDYSKTLVISTEKNGGYAGVGMLSKVAPLKIHKGIGDPEFDTAGRLIIA 133
Query: 169 KFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSID 228
+F F F+ YVPNSG KL ++ R W+ + ++S + +I GDLNV + ID
Sbjct: 134 EFVEFFFVGSYVPNSGAKLVNLEKRGRWEALLTEKLKS-MTMTKPVIYGGDLNVAHEEID 192
Query: 229 LANPDKNV-KTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNK 287
L NP+ N KTAG+T +ER F E+L+ G D FR ++P EE YT+WS+ +AR +
Sbjct: 193 LKNPESNRNKTAGFTDQERGWFTEMLEMGFTDTFRKMHP-EEKKYTFWSYL-ANAREKDV 250
Query: 288 GWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
GWRLDY++VS+++ +K I SDV+GS H P+VL +
Sbjct: 251 GWRLDYYVVSDRIMEKVKKSEIMSDVKGSDHAPIVLHIEF 290
>gi|363893051|ref|ZP_09320191.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402837946|ref|ZP_10886461.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
gi|361961782|gb|EHL14961.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402274377|gb|EJU23561.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
Length = 251
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 151/259 (58%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V++ + + D LQ+I+ QE+++ F Y+ +W
Sbjct: 1 MKFVSWNVNGLRA-VREKGFEDIFKNFDADAFCLQEIKLQENQIELHF----DGYYEYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + TK KP+ V YG+ G+ + GR+IT +++ + TVY PN+ +L
Sbjct: 56 YANKKGYSGTAIYTKHKPIDVHYGL-GIEEHDMEGRLITLEYENYYIATVYTPNAQPELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +R W++ F +Y + +L +II GD+NV Q IDL NP N K G++ EER
Sbjct: 115 RLAYRQKWEEDFREYFK-KLDEKKPVIICGDMNVAHQEIDLKNPKNNRKNPGFSDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL+ G +D FR+ YPD+ Y++WS+R +AR NN GWR+DY VS++L +K
Sbjct: 174 FTLLLNAGFIDTFRYFYPDKTDEYSWWSYR-FNARKNNAGWRIDYFCVSDRLKEKLKSAS 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I DV GS HCPV + + L
Sbjct: 233 IHQDVMGSDHCPVSIEIEL 251
>gi|325285209|ref|YP_004260999.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
gi|324320663|gb|ADY28128.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
Length = 254
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/263 (40%), Positives = 156/263 (59%), Gaps = 16/263 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+ + +WNVNG+RA VKK E + NPDI+ +Q+ + Q++EV K+LS F +
Sbjct: 1 MHIVSWNVNGVRAVVKKE-FFESVKYMNPDILCIQETKAQDNEVA----KALSPLENFSL 55
Query: 132 GSD----KGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
S+ KG G L+ KPLT+K I G+ + GRV+ +++ F + VYVPNSG
Sbjct: 56 ASNSANKKGYSGTATLSSTKPLTIKADI-GIEAHDTEGRVLCTEYENFYLVNVYVPNSGQ 114
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVE 244
KL +++R WD+ F DY+++ L +I GD NV ++IDL N N KTAGYT
Sbjct: 115 KLDRLEYRKQWDKDFLDYLKN-LEKKKPVIACGDFNVAHKAIDLKNDKSNYNKTAGYTQT 173
Query: 245 ERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
E + G VD+FR L+PDE YT+WS+R KS R N GWR+DY LVS+ + + +
Sbjct: 174 EIDGMNNFIADGFVDSFRMLHPDEV-VYTFWSYRFKS-RERNTGWRIDYFLVSQSIKDKV 231
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
K+ + SD+ GS HCP+ L++
Sbjct: 232 KEVTVFSDIMGSDHCPIGLKIDF 254
>gi|440801517|gb|ELR22535.1| exodeoxyribonuclease III, putative [Acanthamoeba castellanii str.
Neff]
Length = 317
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/256 (39%), Positives = 149/256 (58%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WN+NGL A KK V+Y+ +E+PD++ Q+ + Q + + H +W
Sbjct: 61 MKLISWNLNGLNAVHKKGHLVKYVRDEDPDVICFQETKTQTSTAIAQLLGN-DYPHEYWN 119
Query: 132 GS--DKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYVPNSGIKL 187
S G G +K KP++V YGI G++ GRVIT +F RF + Y+PN+G KL
Sbjct: 120 HSVNKLGYAGTATFSKVKPVSVTYGI-GIAEHDGEGRVITTEFDRFYLVNTYIPNAGQKL 178
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+ + +R W++ F Y+++ L ++ GDLNV ID+ANP N KTAG+T EERR
Sbjct: 179 ERLGYRQEWNKDFLAYLKN-LEQTKPVVWCGDLNVAHHDIDIANPKTNQKTAGFTKEERR 237
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
+F +LL++G VD FRH PD + +TYWS R + R N GWRLDY +VS+
Sbjct: 238 DFGQLLESGFVDTFRHQNPDLQ-QFTYWSNR-FNCRAKNLGWRLDYFVVSKDFLPECDKS 295
Query: 308 IIRSDVQGSTHCPVVL 323
+R + GS HCP+ L
Sbjct: 296 FVRPNALGSDHCPIGL 311
>gi|315606307|ref|ZP_07881323.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
gi|315251998|gb|EFU31971.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
Length = 249
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 148/257 (57%), Gaps = 12/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
++ +WNVNGLRACV K E + D LQ+ + QE ++ F Y +W
Sbjct: 1 MRFISWNVNGLRACVSK-GFEESFKALDADFFCLQETKMQEGQLNLQFEG----YDSYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK KPL V YG+ G+ + GRVIT + + F ITVY PNS +L+
Sbjct: 56 YAEKKGYSGTAIYTKHKPLNVTYGL-GIEEHDHEGRVITLEMEDFYLITVYTPNSQDELR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F YIQ L + +I+ GDLNV + IDL NP N + AG+T EER
Sbjct: 115 RLNYRMTWEDDFLKYIQG-LDAKKPVIVCGDLNVAHEEIDLKNPKTNRRNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
L++G D+FR+ YP E+ Y++WS+R AR N GWR+DY L+S +L + + D
Sbjct: 174 MTITLNSGFTDSFRYKYP-EQVTYSWWSYR-FHAREKNAGWRIDYFLISNRLRDRLVDAK 231
Query: 309 IRSDVQGSTHCPVVLRL 325
I ++V GS HCPV L L
Sbjct: 232 IHTEVYGSDHCPVELDL 248
>gi|257789897|ref|YP_003180503.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|317489355|ref|ZP_07947868.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325832619|ref|ZP_08165417.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
gi|257473794|gb|ACV54114.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|316911526|gb|EFV33122.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325485940|gb|EGC88400.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
Length = 285
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/292 (36%), Positives = 153/292 (52%), Gaps = 43/292 (14%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
++ +WNVNGLRA +KK + + E + DI+ALQ+ + QE + L Y +W
Sbjct: 1 MRFVSWNVNGLRAVLKK-GFEDIVCELDADIVALQETKLQEGQA----TLDLPQYREYWS 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGI--PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + KE+PL +G+ P + + GR++ +F +F F+ VY PN+ +L
Sbjct: 56 YAEKKGYSGTAIFCKEQPLQALHGLGFPHLDTE-GRIVALEFPKFWFVDVYTPNAQNELA 114
Query: 189 AIDFRMIWDQHFYDYIQS---------------------------------ELRSNSNII 215
ID RM WD F D+ + E ++
Sbjct: 115 RIDHRMEWDDAFRDFCKGLEEGVLPAGVPVERPALGEGHVAISELPLTQPGETADPKPVV 174
Query: 216 ISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYW 275
+ GD NV Q IDL NP N AG++ EER F +LL+ G VD+FRHL+PD GAY++W
Sbjct: 175 MCGDFNVAHQEIDLKNPGPNRGKAGFSDEERGKFTDLLEVGFVDSFRHLHPDVTGAYSWW 234
Query: 276 SFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
S+R K AR N GWR+DY LVS++LA I+ I +V GS HCPV + L L
Sbjct: 235 SYRFK-ARQTNAGWRIDYFLVSDELAPKIQSACIYDEVYGSDHCPVGIELEL 285
>gi|299141239|ref|ZP_07034376.1| exodeoxyribonuclease III [Prevotella oris C735]
gi|298577199|gb|EFI49068.1| exodeoxyribonuclease III [Prevotella oris C735]
Length = 250
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 149/259 (57%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRACV K+ + N D LQ+ + Q ++ F Y +W
Sbjct: 1 MKFISWNVNGLRACVGKDFSQSF-ETLNADFFCLQETKMQAGQLDLQF----PGYTSYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G G + +++P+ V YGI G+ + GRVIT ++ F +TVY PN+ L+
Sbjct: 56 YADKKGYSGTAIYARKEPIAVTYGI-GIDEHDHEGRVITLEYDNFFLVTVYTPNAQDGLR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+ L +I+ GDLNV Q IDL NP N + AG+T EER
Sbjct: 115 RLDYRMTWEDDFQAYLH-RLDEQKPVIVCGDLNVAHQEIDLKNPKSNRRNAGFTDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LL G D FR LYP E+ Y++WS+R + AR N GWR+DY L+S++L +KD
Sbjct: 174 MTQLLSHGFTDTFRTLYP-EQVTYSWWSYRFR-AREKNAGWRIDYFLISDRLRPQLKDAS 231
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCP+ + L L
Sbjct: 232 IHTEIFGSDHCPIEVDLEL 250
>gi|295107237|emb|CBL04780.1| exodeoxyribonuclease III [Gordonibacter pamelaeae 7-10-1-b]
Length = 285
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 150/291 (51%), Gaps = 41/291 (14%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
++ +WNVNGLRA V+K + + E + DI+ALQ+ + QE + L Y +W
Sbjct: 1 MRFISWNVNGLRA-VQKKGFEDIVCELDADIVALQETKLQEGQA----TLDLPQYREYWS 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPG-VSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TKE+PL V +G+ + GR++ +F +F F+ VY PN+ +L
Sbjct: 56 YAEKKGYSGTAVFTKEQPLQVLHGLGSDYLDAEGRIVALEFPQFWFVDVYTPNAQNELAR 115
Query: 190 IDFRMIWDQHFYDYIQ---------------------------------SELRSNSNIII 216
I RM WD F D+ + E + +++
Sbjct: 116 IAHRMEWDDAFRDFCKGLEEGVLPADVPVQRPAPGEGHVCISELPLTQPGETAAPKPVVM 175
Query: 217 SGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWS 276
GD NV Q IDL NP N AG++ EER F +LL+ G VD FR L+PD GAY++WS
Sbjct: 176 CGDFNVAHQEIDLKNPGPNRGKAGFSDEERGKFTDLLEAGFVDTFRRLHPDVTGAYSWWS 235
Query: 277 FRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+R K AR NN GWR+DY LVSE LA + I +V GS HCPV L L L
Sbjct: 236 YRFK-ARQNNAGWRIDYFLVSESLAPKVASACIYDEVYGSDHCPVGLELEL 285
>gi|410622567|ref|ZP_11333400.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM
615]
gi|410157921|dbj|GAC28774.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM
615]
Length = 255
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 156/260 (60%), Gaps = 10/260 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA +KK+ + + D++ LQ+ + Q+D+V E+ L YH+F
Sbjct: 1 MKLVSWNVNGVRAAIKKDF-FQSLASLECDVLCLQETKAQDDQVIEAL-CDLKGYHVFTN 58
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G ++T+ KP+ V I G+ +Q GRV+ A+F F +TVY PNSG LK
Sbjct: 59 SAIKKGYSGTSIITRVKPIDVTRDI-GIEEHDQEGRVLCAEFDAFYLVTVYTPNSGDSLK 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEERR 247
+ +R WD F Y++ +L + +++ GDLNV + ID+A P N K+AGYT +E
Sbjct: 118 RLSYRTQWDADFLSYVK-QLEALKPVVVCGDLNVAHRDIDIARPKPNYNKSAGYTQKEID 176
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
L+ G VD FRHL+PD Y++WS+R AR N GWRLDY LVS +L I
Sbjct: 177 GIDSLIAAGYVDTFRHLFPDTV-KYSWWSYR-AGARERNVGWRLDYFLVSHKLKEQISGA 234
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV ++LSL
Sbjct: 235 DIHNDIHGSDHCPVSVQLSL 254
>gi|295099755|emb|CBK88844.1| exodeoxyribonuclease III [Eubacterium cylindroides T2-87]
Length = 249
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 157/257 (61%), Gaps = 9/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA + K ++ + + DI +Q+ + Q D++ L Y
Sbjct: 1 MKLISWNVNGIRAVLNK-GFIDILNTLDADIFCIQETKAQPDQI--EVDCDLYLYQYINS 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + +K +PL+V YGI + GRVIT +F + +TVY PNSG LK +
Sbjct: 58 AQRKGYSGTMIFSKIEPLSVHYGIDIPEHDTEGRVITLEFDSYYVVTVYTPNSGDGLKRL 117
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
++RM WD+ F +YIQS + ++++GDLNV + ID+ NP N + AG+T EER +F+
Sbjct: 118 EYRMEWDKAFSNYIQS---LDKPVLLTGDLNVANEEIDIKNPKTNRRNAGFTDEERDSFK 174
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+ L T L D++R LYPD+ Y++WS+R K AR N GWR+DY LVSE+L +KD I
Sbjct: 175 KNLLTILKDSYRTLYPDKV-EYSWWSYRFK-AREKNAGWRIDYWLVSEELMPKVKDSKIL 232
Query: 311 SDVQGSTHCPVVLRLSL 327
+D+ GS HCPV L + L
Sbjct: 233 TDIYGSDHCPVQLEIEL 249
>gi|255578467|ref|XP_002530098.1| ap endonuclease, putative [Ricinus communis]
gi|223530409|gb|EEF32297.1| ap endonuclease, putative [Ricinus communis]
Length = 486
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/265 (40%), Positives = 156/265 (58%), Gaps = 18/265 (6%)
Query: 69 TTKVKVSTWNVNGLRACVKKN--ACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHY 126
T VK+ +WNVNGLRA +K + VE EN D++ Q+ + Q SF + SH
Sbjct: 234 TKFVKLMSWNVNGLRALLKLEGFSAVELAQRENFDVLCFQETKLQAKGYENSFW-TCSHS 292
Query: 127 HMFWIGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYVPNSG 184
+ G G ++++ KPL+V YG+ G+++ GR++TA+F F + YVPNSG
Sbjct: 293 KL-------GYSGTAIVSRVKPLSVSYGL-GIADHDSEGRLVTAEFDSFYLLNAYVPNSG 344
Query: 185 IKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTV 243
LK + +R+ WD +Y++ EL + +I++GDLN Q ID+ NP N + AG+T
Sbjct: 345 DGLKRLSYRVSQWDLSLSNYMK-ELEKSKPVILNGDLNCAHQEIDIYNPAGNRRNAGFTD 403
Query: 244 EERRNFR-ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLAN 302
EER++F L G VD+FR +PD G YTYW +R+ R NKGWRLDY LVSE +++
Sbjct: 404 EERQSFETNFLSRGFVDSFRKQHPDVVG-YTYWGYRH-GGRKTNKGWRLDYFLVSESISD 461
Query: 303 NIKDCIIRSDVQGSTHCPVVLRLSL 327
+ D I DV GS HCP+ L L +
Sbjct: 462 QVHDSYIVPDVTGSDHCPIGLVLKV 486
>gi|256827574|ref|YP_003151533.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
gi|256583717|gb|ACU94851.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
Length = 262
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/268 (39%), Positives = 149/268 (55%), Gaps = 18/268 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNGLRA KK + D+ ALQ+ + QE ++ F SH+
Sbjct: 1 MRLVSWNVNGLRAAEKKGFS-DIFTSLKADVFALQETKLQEGQIDLEFPDYESHWSY--- 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + ++KPL V +G+ GV + GR+ +F F F+ VY PN+ +L
Sbjct: 57 AERKGYSGTAVYARQKPLQVLHGL-GVPHLDTEGRICALEFPEFWFVDVYTPNAQNELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSN----------IIISGDLNVCLQSIDLANPDKNVKTA 239
ID RM WD F D+ + + + +I+ GD NV + IDL NP N A
Sbjct: 116 IDHRMEWDDAFRDFCKGLEKGTTPLGPDTAQPKPVIMCGDFNVAHEEIDLKNPKSNRGNA 175
Query: 240 GYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
G++ EER F +LLD G VD FR L P E GAY++WS+R +AR NN GWR+DY LVS+
Sbjct: 176 GFSDEEREKFTKLLDAGFVDTFRLLNPTEVGAYSWWSYR-FNARANNAGWRIDYFLVSKS 234
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
LA+ ++ I +D+ GS HCPV L + L
Sbjct: 235 LADRVRAARIHADLFGSDHCPVSLDIDL 262
>gi|354806768|ref|ZP_09040248.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
gi|354514743|gb|EHE86710.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
Length = 254
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 142/254 (55%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA +KK+ + + + D LQ+ + Q +V L YH ++
Sbjct: 1 MKFISWNVNGLRAVLKKDFMTTFN-QLDADFFCLQETKMQAGQV----ELDLPGYHQYFN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KPLT YGI +Q GRVIT ++ F IT Y PNS KLK
Sbjct: 56 YAEKKGYSGTAIFTKHKPLTATYGIGQPEHDQEGRVITLEYPTFYLITCYTPNSQDKLKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F YI ++L + +I GDLNV + IDL N N AG++ EER
Sbjct: 116 LDYRMRWENAFQTYI-ADLSTQKPVIFCGDLNVAHEPIDLKNDKTNHHNAGFSDEERGQM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL+ G D FR+ YPD+ Y++WS+R AR NN GWR+DY + S L + D I
Sbjct: 175 TTLLNRGFTDTFRYFYPDQPDIYSWWSYR-FHARDNNAGWRIDYFITSNDLQPKLVDAKI 233
Query: 310 RSDVQGSTHCPVVL 323
+++ GS HCPV L
Sbjct: 234 HTEIFGSDHCPVEL 247
>gi|326523229|dbj|BAJ88655.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 531
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/269 (40%), Positives = 161/269 (59%), Gaps = 15/269 (5%)
Query: 69 TTKVKVSTWNVNGLRACVKKN--ACVEYILEENPDIMALQQIRCQEDEVPESFRKSL--S 124
T +K+ +WNVNGLRA VK + E E+ D++ LQ+ + QE +V E ++SL
Sbjct: 268 TRALKILSWNVNGLRALVKSRGFSIHELAQREDFDVLCLQETKMQEKDV-EVIKESLLEG 326
Query: 125 HYHMFWIGSDK--GQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYV 180
+ + FW S G G ++++ KPL++KYG+ GV + GR++T +F F +T YV
Sbjct: 327 YTNSFWTCSVSKLGYSGTAIISRVKPLSIKYGL-GVPDHDTEGRIVTVEFDDFYLLTAYV 385
Query: 181 PNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTA 239
PNSG LK + +R+ WD +Y++ EL + +I++GDLN Q ID+ +P N ++A
Sbjct: 386 PNSGDGLKRLTYRVTEWDPCLGNYMK-ELEKSKPVILTGDLNCAHQEIDIHDPAGNSRSA 444
Query: 240 GYTVEERRNFR-ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSE 298
G+T EER++F L G VD FR +PD G Y+YW +R+ + R N+GWRLDY LVSE
Sbjct: 445 GFTKEERKSFETNFLSKGFVDTFRKQHPDVVG-YSYWGYRH-NCRKTNRGWRLDYFLVSE 502
Query: 299 QLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+A I D I DV S H P+ L L L
Sbjct: 503 SIAERIHDSYILPDVSASDHSPLGLILKL 531
>gi|341882542|gb|EGT38477.1| CBN-EXO-3 protein [Caenorhabditis brenneri]
Length = 293
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/280 (41%), Positives = 167/280 (59%), Gaps = 13/280 (4%)
Query: 52 KQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQ 111
K+ K I ++G++K + K WNV GLRACVKK+ E +L E PDI+ L + +C+
Sbjct: 23 KKPKTQIPSDDGNQKSW----KFVCWNVAGLRACVKKSDFSE-VLAEQPDIVFLGETKCK 77
Query: 112 E--DEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITA 168
E EV E+F K S + + G GVGLL+K PL + GI + GR+I A
Sbjct: 78 EWPPEVEETF-KDYSKTLVVSTEKNGGYAGVGLLSKCAPLKIHKGIGDPDFDSAGRLIIA 136
Query: 169 KFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSID 228
++ +F F+ YVPNSG KL ++ R W++ D ++ E+ +I GDLNV ID
Sbjct: 137 EYSQFYFMGAYVPNSGAKLVNLEKRGKWEKLLTDKLR-EMNEKKPVIYGGDLNVAHNEID 195
Query: 229 LANPDKNV-KTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNK 287
L NP+ N KTAG+T +ER F E+L+ G D+FR L+P E Y++WS+ S R +
Sbjct: 196 LKNPESNRNKTAGFTDQERGWFGEMLEIGFTDSFRKLHP-ESKKYSFWSYLANS-REKDV 253
Query: 288 GWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
GWRLDY +VS+++ +N+K I S V+GS H P+V++L L
Sbjct: 254 GWRLDYFVVSDRIMDNVKKSDIMSAVKGSDHAPIVMQLDL 293
>gi|333984917|ref|YP_004514127.1| exodeoxyribonuclease III [Methylomonas methanica MC09]
gi|333808958|gb|AEG01628.1| exodeoxyribonuclease III Xth [Methylomonas methanica MC09]
Length = 254
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 159/259 (61%), Gaps = 10/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA V++ + + + D + LQ+ + Q+D+V ++ + + HYH++
Sbjct: 1 MKIISWNVNGIRA-VQEKGFRDSLQHFDADCILLQETKAQDDQVHKAL-EGIDHYHVYCN 58
Query: 132 GSD-KGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++ KG GV LLT+ PL V + + G++ +Q GRV+ A+F+ F + VYVPNSG L
Sbjct: 59 SAERKGYSGVALLTRNPPLRVVHDM-GIAEHDQEGRVLVAEFESFYLLNVYVPNSGDGLA 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEERR 247
+D+R WD Y+Q +L++ +I GD NV Q+ID+A P N K+AGYT E
Sbjct: 118 RLDYRQTWDAALLAYLQ-QLQNQKPVIACGDFNVAHQAIDIARPKANYNKSAGYTQTEID 176
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
F + G +D+FRH +P E AY++WS+R AR N GWR+DY L S+ L I+D
Sbjct: 177 GFSRFTEAGFIDSFRHFHP-ETVAYSWWSYR-AGARAKNIGWRIDYVLTSQALLPRIQDS 234
Query: 308 IIRSDVQGSTHCPVVLRLS 326
I ++ GS HCPV +++S
Sbjct: 235 FILPEIMGSDHCPVGIQIS 253
>gi|401680683|ref|ZP_10812594.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
gi|400218294|gb|EJO49178.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
Length = 251
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 145/259 (55%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA V K ++ E + DI LQ+ + Q P L Y FW
Sbjct: 1 MKLISWNVNGLRAAVTK-GFIDSFNELDADIFCLQETKLQ----PHQIELELPGYEQFWN 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + T+ KP+ V GI G+ +Q GRVITA+F F + Y PNS +L
Sbjct: 56 SAVKKGYSGTAVFTRIKPIAVTNGI-GIEEHDQEGRVITAEFDNFYLVCCYTPNSQRELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+ EL +I+ GDLNV IDL NP N K AG++ EER
Sbjct: 115 RLDYRMAWEDAFRAYLL-ELDKKKPVILCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
LL++G D FR+LYPD Y++WS+ K AR N GWR+DY + S++L + I +
Sbjct: 174 MTTLLESGFTDTFRYLYPDAVDEYSWWSYMGK-ARDRNVGWRIDYFITSKRLDDKINEAK 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + GS HCPV L + L
Sbjct: 233 IHQQIFGSDHCPVELDIEL 251
>gi|418010415|ref|ZP_12650192.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
gi|410553904|gb|EKQ27892.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
Length = 252
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/255 (41%), Positives = 150/255 (58%), Gaps = 12/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KK+ + E + D LQ+ + Q +V + L YH ++
Sbjct: 1 MKLISWNVNGLRAVLKKDFMTIFN-ELDADWFCLQETKMQAGQV----KLDLPGYHQYFN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGV--SNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL V YG+ GV + GR+IT ++ F +TVY PNSG +LK
Sbjct: 56 YAERKGYSGTAIFTKHEPLNVTYGM-GVPEHDTEGRIITLEYPNFYLMTVYTPNSGGELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R WD+ F Y ++L + ++ GDLNV Q IDL N N AG+T EER +
Sbjct: 115 RLDYRQQWDKDFLAYT-NQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERAD 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F + LD+G +D FR+LYPD Y++WS+R AR NN GWR+DY + S I+D
Sbjct: 174 FTKQLDSGFIDTFRNLYPDTV-TYSWWSYR-FHARANNAGWRIDYFVSSRDFKPYIQDAK 231
Query: 309 IRSDVQGSTHCPVVL 323
I +D+ GS HCPV L
Sbjct: 232 ILTDIMGSDHCPVEL 246
>gi|363889335|ref|ZP_09316698.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
gi|361966758|gb|EHL19645.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
Length = 251
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 150/259 (57%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V++ + + D LQ+I+ QE+++ F Y+ +W
Sbjct: 1 MKFVSWNVNGLRA-VREKGFEDIFKNFDADAFCLQEIKLQENQIELHF----DGYYEYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + TK KP+ V YG+ G+ + GR+IT +++ + TVY PN+ +L
Sbjct: 56 YANKKGYSGTAIYTKHKPIDVHYGL-GIEEHDMEGRLITLEYENYYIATVYTPNAQPELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +R W+ F +Y + +L +II GD+NV Q IDL NP N K G++ EER
Sbjct: 115 RLAYRQKWEDDFREYFK-KLDEKKPVIICGDMNVAHQEIDLKNPKNNRKNPGFSDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F L++G +D FR+ YPD+ Y++WS+R +AR NN GWR+DY VS++L +K
Sbjct: 174 FTMFLNSGFIDTFRYFYPDKTDEYSWWSYR-FNARKNNAGWRIDYFCVSDRLKEKLKSAS 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I DV GS HCPV + + L
Sbjct: 233 IHQDVMGSDHCPVSIEIEL 251
>gi|281423696|ref|ZP_06254609.1| exodeoxyribonuclease III [Prevotella oris F0302]
gi|281402248|gb|EFB33079.1| exodeoxyribonuclease III [Prevotella oris F0302]
Length = 250
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 149/259 (57%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRACV K+ + N D LQ+ + Q ++ F Y +W
Sbjct: 1 MKFISWNVNGLRACVGKDFSQSF-ETLNADFFCLQETKMQAGQLDLQF----PGYTSYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G G + +++P+ V YGI G+ + GRVIT ++ F +TVY PN+ L+
Sbjct: 56 YADKKGYSGTAIYARKEPIAVTYGI-GIDEHDHEGRVITLEYDNFFLVTVYTPNAQDGLR 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+ L +I+ GDLNV Q IDL NP N + AG+T EER
Sbjct: 115 RLDYRMTWEDDFQAYLH-RLDEQKPVIVCGDLNVAHQEIDLKNPKSNRRNAGFTDEERDK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LL G D FR LYP E+ Y++WS+R + AR N GWR+DY L+S++L +KD
Sbjct: 174 MTQLLSHGFTDTFRTLYP-EQVTYSWWSYRFR-AREKNAGWRIDYFLISDRLRPQLKDAS 231
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCP+ + L L
Sbjct: 232 IHTEIFGSDHCPIEVDLEL 250
>gi|288929660|ref|ZP_06423504.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
gi|288329165|gb|EFC67752.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
Length = 249
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 148/258 (57%), Gaps = 14/258 (5%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
+K +WNVNGLRA V K+ E + + D LQ+ + Q ++ F Y FW
Sbjct: 1 MKFISWNVNGLRAVVGKD--FENTFKALDADFFCLQETKMQAGQLDLQF----DGYDSFW 54
Query: 131 IGSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKL 187
+DK G G + T+ KPL V YGI G+ + GRVIT + F +TVY PNS +L
Sbjct: 55 NYADKKGYSGTAIYTRHKPLNVSYGI-GIDQHDHEGRVITLEMPTFFLVTVYTPNSQEEL 113
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+ +D+RM W+ F Y+ + L +I+ GD+NV Q IDL NP N + AG+T EER+
Sbjct: 114 RRLDYRMQWEDDFQAYLHN-LDKCKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEERQ 172
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
+LLD G D FR YP EE Y++WS+R K AR N GWR+DY LVS +L + D
Sbjct: 173 KMTQLLDAGFTDTFRWKYP-EEVTYSWWSYRFK-ARERNTGWRIDYFLVSNRLQAEVLDA 230
Query: 308 IIRSDVQGSTHCPVVLRL 325
I +D+ GS HCPV L L
Sbjct: 231 KIHTDILGSDHCPVELLL 248
>gi|115440515|ref|NP_001044537.1| Os01g0801000 [Oryza sativa Japonica Group]
gi|55296319|dbj|BAD68137.1| putative DNA-(apurinic or apyrimidinic site) lyase (ARP) [Oryza
sativa Japonica Group]
gi|55297696|dbj|BAD68286.1| putative DNA-(apurinic or apyrimidinic site) lyase (ARP) [Oryza
sativa Japonica Group]
gi|113534068|dbj|BAF06451.1| Os01g0801000 [Oryza sativa Japonica Group]
gi|215715310|dbj|BAG95061.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222619408|gb|EEE55540.1| hypothetical protein OsJ_03774 [Oryza sativa Japonica Group]
Length = 499
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/269 (40%), Positives = 161/269 (59%), Gaps = 15/269 (5%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYIL--EENPDIMALQQIRCQEDEVPESFRKSL--S 124
T +K+ +WNVNGL+A +K + L E+ DI+ LQ+ + QE +V E ++ L
Sbjct: 236 TKALKILSWNVNGLKALLKSRGFSIHQLAQREDFDILCLQETKMQEKDV-EVIKEGLLEG 294
Query: 125 HYHMFWIGSDK--GQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYV 180
+ H FW S G G ++++ KPL++KYG+ GV + GRV+T +F F +T YV
Sbjct: 295 YTHSFWTCSVSKLGYSGTAIISRVKPLSIKYGL-GVPDHDTEGRVVTVEFNDFYLLTAYV 353
Query: 181 PNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTA 239
PNSG LK + +R+ WD +Y++ +L + +I++GDLN Q ID+ +P N ++A
Sbjct: 354 PNSGDGLKRLTYRVTEWDPSLGNYMK-DLEKSKPVILTGDLNCAHQEIDIHDPAGNRRSA 412
Query: 240 GYTVEERRNFR-ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSE 298
G+T+EER +F L G VD FR +P+ G Y+YW +R+ +AR NKGWRLDY LVSE
Sbjct: 413 GFTIEERESFETNFLSKGFVDTFRKQHPNVVG-YSYWGYRH-NARKTNKGWRLDYFLVSE 470
Query: 299 QLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+A + D I D+ S H P+ L L L
Sbjct: 471 SIAERVHDSYIIPDISASDHSPLGLVLKL 499
>gi|218189226|gb|EEC71653.1| hypothetical protein OsI_04096 [Oryza sativa Indica Group]
Length = 499
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/269 (40%), Positives = 161/269 (59%), Gaps = 15/269 (5%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYIL--EENPDIMALQQIRCQEDEVPESFRKSL--S 124
T +K+ +WNVNGL+A +K + L E+ DI+ LQ+ + QE +V E ++ L
Sbjct: 236 TKALKILSWNVNGLKALLKSRGFSIHQLAQREDFDILCLQETKMQEKDV-EVIKEGLLEG 294
Query: 125 HYHMFWIGSDK--GQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYV 180
+ H FW S G G ++++ KPL++KYG+ GV + GRV+T +F F +T YV
Sbjct: 295 YTHSFWTCSVSKLGYSGTAIISRVKPLSIKYGL-GVPDHDTEGRVVTVEFNDFYLLTAYV 353
Query: 181 PNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTA 239
PNSG LK + +R+ WD +Y++ +L + +I++GDLN Q ID+ +P N ++A
Sbjct: 354 PNSGDGLKRLTYRVTEWDPSLGNYMK-DLEKSKPVILTGDLNCAHQEIDIHDPAGNRRSA 412
Query: 240 GYTVEERRNFR-ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSE 298
G+T+EER +F L G VD FR +P+ G Y+YW +R+ +AR NKGWRLDY LVSE
Sbjct: 413 GFTIEERESFETNFLSKGFVDTFRKQHPNVVG-YSYWGYRH-NARKTNKGWRLDYFLVSE 470
Query: 299 QLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+A + D I D+ S H P+ L L L
Sbjct: 471 SIAERVHDSYIIPDISASDHSPLGLVLKL 499
>gi|397904085|ref|ZP_10505014.1| Exodeoxyribonuclease III [Caloramator australicus RC3]
gi|343178831|emb|CCC57913.1| Exodeoxyribonuclease III [Caloramator australicus RC3]
Length = 252
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 151/256 (58%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ TWNVNGLR+ +KK +++I +E+PDI+ LQ+ + QE+++ + + +Y F
Sbjct: 1 MRIYTWNVNGLRSILKK-GFLDFIKDEDPDILCLQETKLQEEQIDDEIKNLKGYYKYFSF 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG GV + TK +P + YGI G+ + GR++ A+++ F +Y PN + +
Sbjct: 60 ANKKGYSGVAIFTKVEPKNIYYGI-GIEEFDTEGRILIAEYEDFILFNIYFPNGKMSDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+++ + DY ++ L N+II GD N + IDL NP +N K++G+ ER
Sbjct: 119 LDYKLRFYDAIMDYSKNLLEEGKNLIICGDYNTAHREIDLKNPKQNEKSSGFLPIEREYI 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L+ G +DA+RH YPD + YT+WS+ K AR N GWR+DY VS + IKD I
Sbjct: 179 DRFLEIGFIDAYRHFYPD-KIEYTWWSYMFK-AREKNVGWRIDYFFVSNNFISKIKDVEI 236
Query: 310 RSDVQGSTHCPVVLRL 325
+ + GS HCPV L +
Sbjct: 237 LTHIHGSDHCPVKLTI 252
>gi|58337957|ref|YP_194542.1| exodeoxyribonuclease [Lactobacillus acidophilus NCFM]
gi|227902875|ref|ZP_04020680.1| exodeoxyribonuclease [Lactobacillus acidophilus ATCC 4796]
gi|58255274|gb|AAV43511.1| exodeoxyribonuclease [Lactobacillus acidophilus NCFM]
gi|227869391|gb|EEJ76812.1| exodeoxyribonuclease [Lactobacillus acidophilus ATCC 4796]
Length = 253
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 157/259 (60%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG R C++ + ++ L+ +PDI +Q R P+ + L+ Y+ +W
Sbjct: 1 MKFVSWNVNGFRRCLR-HGFLDTFLDLDPDIFGMQDTRLS----PKEVKIDLTEYYQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+K G + TK KPL V GI G+ ++ GR IT +F +F ++ + P +G +L+
Sbjct: 56 FSEEKRYDGAAVFTKIKPLAVYNGI-GIPEFDREGRTITLEFPKFYYVNTFAPYAGEQLQ 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+DFR++W Q F +Y+ ++L +N +II GD++V IDLA P+KN AG+T +ER+
Sbjct: 115 RLDFRVMWAQAFRNYV-TKLANNKPVIIGGDMSVAHDEIDLAEPEKNKNHAGFTGDERKE 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELL+ G D FR L+P +E AYTYWS R+ +AR N G RLDY LVS L + ++
Sbjct: 174 FTELLNAGFEDTFRTLHPKDE-AYTYWS-RHDNARDKNIGERLDYFLVSHALTDKVEGSD 231
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ S HCP+ L + +
Sbjct: 232 ILNNIDESDHCPIELNMDI 250
>gi|423078997|ref|ZP_17067672.1| exodeoxyribonuclease III [Lactobacillus rhamnosus ATCC 21052]
gi|357548454|gb|EHJ30318.1| exodeoxyribonuclease III [Lactobacillus rhamnosus ATCC 21052]
Length = 253
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 147/254 (57%), Gaps = 10/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA +KK+ + E + D LQ+ + Q +V +Y F
Sbjct: 2 LKMISWNVNGLRAVLKKDFMTIFN-ELDADWFCLQETKMQAGQVELDLP---GYYQYFNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KPL V YG+ G+ + GR+IT ++ +F +TVY PNSG +LK
Sbjct: 58 AERKGYSGTAIFTKHKPLNVTYGM-GIPEHDTEGRIITLEYPKFYLMTVYTPNSGGELKR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R WD+ F Y +EL + ++ GDLNV + IDL N N AG+T EER +F
Sbjct: 117 LDYRQQWDRDFLAYT-NELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ L++G +D FRH YPD Y++WS+R AR NN GWR+DY + S + I+D I
Sbjct: 176 TKQLNSGFIDTFRHFYPDTV-TYSWWSYRFH-ARANNAGWRIDYFVASSAFQSYIQDAKI 233
Query: 310 RSDVQGSTHCPVVL 323
+ + GS HCPV L
Sbjct: 234 LTQIMGSDHCPVEL 247
>gi|348027153|ref|YP_004766958.1| exodeoxyribonuclease III [Megasphaera elsdenii DSM 20460]
gi|341823207|emb|CCC74131.1| exodeoxyribonuclease III [Megasphaera elsdenii DSM 20460]
Length = 254
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 148/257 (57%), Gaps = 11/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
K +WNVNGLRA +KK ++ + D+ LQ+ + Q ++ L Y +W
Sbjct: 5 TKFISWNVNGLRAVMKK-GFLDIFQALDADVFCLQETKLQAGQID----LDLPGYEQYWN 59
Query: 132 GSD-KGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+D KG G + T+ PL+V+YG+ G+ + GR+IT +F + F+T Y PNS +L
Sbjct: 60 YADRKGYSGTAIFTRLAPLSVRYGM-GIDEHDHEGRLITLEFPDYYFVTCYTPNSQSELA 118
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W+ F Y+ +L +I+ GDLNV + IDL NP N K AG++ EER+
Sbjct: 119 RLPYRMKWEDDFRQYLL-DLHQEKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFSDEERQK 177
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LL G D +R+ YPD G Y++WS+R K AR NN GWR+DY L ++ L + +
Sbjct: 178 MTDLLAAGFTDTWRYFYPDVTGVYSWWSYRFK-ARQNNAGWRIDYFLTTKDLDSRLAKAS 236
Query: 309 IRSDVQGSTHCPVVLRL 325
I +D+ GS HCPV L L
Sbjct: 237 IYTDITGSDHCPVGLEL 253
>gi|418070253|ref|ZP_12707528.1| exodeoxyribonuclease III [Lactobacillus rhamnosus R0011]
gi|357539673|gb|EHJ23690.1| exodeoxyribonuclease III [Lactobacillus rhamnosus R0011]
Length = 252
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 147/254 (57%), Gaps = 10/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA +KK+ + E + D LQ+ + Q +V +Y F
Sbjct: 1 MKMISWNVNGLRAVLKKDFMTIFN-ELDADWFCLQETKMQAGQVELDLP---GYYQYFNY 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGV--SNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KPL V YG+ G+ + GR+IT ++ +F +TVY PNSG +LK
Sbjct: 57 AERKGYSGTAIFTKHKPLNVTYGM-GIPEHDTEGRIITLEYPKFYLMTVYTPNSGGELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R WD+ F Y +EL + ++ GDLNV + IDL N N AG+T EER +F
Sbjct: 116 LDYRQQWDRDFLAYT-NELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ L++G +D FRH YPD Y++WS+R AR NN GWR+DY + S + I+D I
Sbjct: 175 TKQLNSGFIDTFRHFYPDTV-TYSWWSYRFH-ARANNAGWRIDYFVASSAFQSYIQDAKI 232
Query: 310 RSDVQGSTHCPVVL 323
+ + GS HCPV L
Sbjct: 233 LTQIMGSDHCPVEL 246
>gi|223935760|ref|ZP_03627676.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
gi|223895768|gb|EEF62213.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
Length = 250
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/257 (39%), Positives = 149/257 (57%), Gaps = 9/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KKN ++++ +E+PDI+ LQ+ +C D+V + + + + Y W
Sbjct: 1 MKLISWNVNGLRAVLKKNF-LDFLAKEDPDILCLQETKCTPDDVEQLWPATFTTY---WN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KP++V GI + GRV+T+++ F + VYVPNS +L
Sbjct: 57 TAQKKGYSGTAIFTKAKPISVSLGINCPEHDMEGRVLTSEYPEFFLVNVYVPNSKRELTR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +R WD F Y++ +L +I GDLNV IDLANP NVK G+T EER F
Sbjct: 117 LAYRQQWDCDFLSYLK-KLEKKKPVIFCGDLNVAHTEIDLANPKANVKNHGFTPEERAGF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
++ G +D FR + G Y++WS AR N GWR+DY L+S L +K I
Sbjct: 176 STVIKAGFIDTFRE-FEKGGGHYSWWS-PMGGARSRNVGWRIDYFLISSALRPRLKRAFI 233
Query: 310 RSDVQGSTHCPVVLRLS 326
+ ++ GS HCPV + LS
Sbjct: 234 QPNIPGSDHCPVGIELS 250
>gi|357060646|ref|ZP_09121414.1| exodeoxyribonuclease [Alloprevotella rava F0323]
gi|355375951|gb|EHG23219.1| exodeoxyribonuclease [Alloprevotella rava F0323]
Length = 259
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 142/260 (54%), Gaps = 9/260 (3%)
Query: 68 YTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYH 127
Y ++K +WNVNGLRAC K + + D LQ+ + Q ++ F Y
Sbjct: 6 YKKRMKFISWNVNGLRACDGK-GFRDAFRNLDADFFCLQETKMQAGQLDIDFEG----YE 60
Query: 128 MFW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + TK PL V YG+ + GRVIT + F ITVY PNS
Sbjct: 61 SYWNYAEKKGYSGTAIFTKHHPLNVTYGLGHEEHDHEGRVITLEMDNFFLITVYTPNSQD 120
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
+L+ +D+RM W+ F +Y+ EL +I+ GDLNV Q IDL NP N + AG+T EE
Sbjct: 121 ELRRLDYRMTWEDAFREYLL-ELNKKKPVIVCGDLNVAHQEIDLKNPKTNRRNAGFTDEE 179
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R +LL+ G D FR PD GAY++WS+R + AR N GWR+DY LVS L + +
Sbjct: 180 REKMTQLLNAGFTDTFRFFNPDLTGAYSWWSYRFR-AREKNAGWRIDYFLVSNCLNDKLV 238
Query: 306 DCIIRSDVQGSTHCPVVLRL 325
I +++ GS HCPV + L
Sbjct: 239 SASIHNEIFGSDHCPVEIVL 258
>gi|395645806|ref|ZP_10433666.1| exodeoxyribonuclease III [Methanofollis liminatans DSM 4140]
gi|395442546|gb|EJG07303.1| exodeoxyribonuclease III [Methanofollis liminatans DSM 4140]
Length = 253
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 148/258 (57%), Gaps = 11/258 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNG+R+ KK C ++ +E+PDI+ +Q+ + QED++P R ++ F
Sbjct: 1 MRLLSWNVNGIRSVHKKGFC-KWFGDESPDILCIQETKAQEDQIPPEIRSPPGYHAYFSS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAID 191
KG GV L ++E+P+++ G GR+I A+++ FT +Y PN K+
Sbjct: 60 AMRKGYSGVALFSREEPISITRDFDGRFGDEGRIIIAEYQAFTLFDIYFPNG----KSSP 115
Query: 192 FRMIWDQHFYDYIQSELRS----NSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
R+ + FYD S +R ++++ GD+N Q+IDLA P +NVK +G+ EER
Sbjct: 116 ERLAYKMAFYDAFLSSVRGMNEEGRSVVVCGDVNTAHQAIDLARPKENVKISGFLPEERA 175
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
+++GLVD FR + E G YTYW + + AR N GWR+DY VS +LA ++D
Sbjct: 176 ALDLWIESGLVDTFR-FFTAEGGHYTYWDLKTR-ARDRNVGWRIDYFFVSSELAGAVQDA 233
Query: 308 IIRSDVQGSTHCPVVLRL 325
I DV GS HCP+ + +
Sbjct: 234 FILPDVMGSDHCPIGIEI 251
>gi|967268|gb|AAC47024.1| class II apurinic/apyrimidinic(AP)-endonuclease [Dictyostelium
discoideum]
Length = 361
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 165/269 (61%), Gaps = 24/269 (8%)
Query: 71 KVKVSTWNVNGLRACVKKN--ACVEYILEENPDIMALQQIRC-----QEDEVPESFRKSL 123
++K+ +WNV G ++ + K CVE +ENPD++ LQ+ + ++D++P+ +
Sbjct: 104 QMKIISWNVAGFKSVLSKGFTECVE---KENPDVLCLQETKINPSNIKKDQMPKGYE--- 157
Query: 124 SHYHMFWIGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVP 181
YH F KG G G+LTK+KP + +GI G++ + GRVIT ++ +F + Y+P
Sbjct: 158 --YH-FIEADQKGHHGTGVLTKKKPNAITFGI-GIAKHDNEGRVITLEYVQFYIVNTYIP 213
Query: 182 NSGIK-LKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTA 239
N+G + L+ +D+R+ WD F Y++ +L + II GDLNV IDL NP N K+A
Sbjct: 214 NAGTRGLQRLDYRIKEWDVDFQAYLE-KLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSA 272
Query: 240 GYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
G+T+EER +F L+ G VD++RH P +EG+YT+WS+ R N GWRLDY +VS++
Sbjct: 273 GFTIEERTSFSNFLEKGYVDSYRHFNPGKEGSYTFWSYLG-GGRSKNVGWRLDYFVVSKR 331
Query: 300 LANNIK-DCIIRSDVQGSTHCPVVLRLSL 327
L ++IK R+ V GS HCP+ + + L
Sbjct: 332 LMDSIKISPFHRTSVMGSDHCPIGVVVDL 360
>gi|418007606|ref|ZP_12647486.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
gi|410548624|gb|EKQ22818.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
Length = 252
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/255 (41%), Positives = 149/255 (58%), Gaps = 12/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KK+ + E + D LQ+ + Q +V L YH ++
Sbjct: 1 MKLISWNVNGLRAVLKKDFMTIFN-ELDADWFCLQETKMQAGQV----ELDLPGYHQYFN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGV--SNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL V YG+ GV + GR+IT ++ F +TVY PNSG +LK
Sbjct: 56 YAERKGYSGTAIFTKHEPLNVTYGM-GVPEHDTEGRIITLEYPNFYLMTVYTPNSGGELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R WD+ F Y ++L + ++ GDLNV Q IDL N N AG+T EER +
Sbjct: 115 RLDYRQQWDKDFLAYT-NQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERAD 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F + LD+G +D FR+LYPD Y++WS+R AR NN GWR+DY + S I+D
Sbjct: 174 FTKQLDSGFIDTFRNLYPDTV-TYSWWSYR-FHARANNAGWRIDYFVSSRNFKPYIQDAK 231
Query: 309 IRSDVQGSTHCPVVL 323
I +D+ GS HCPV L
Sbjct: 232 ILTDIMGSDHCPVEL 246
>gi|363893404|ref|ZP_09320502.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
gi|361963708|gb|EHL16774.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
Length = 251
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 150/259 (57%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA V++ + + D LQ+I+ QE+++ F Y+ +W
Sbjct: 1 MKFVSWNVNGLRA-VREKGFEDIFKNFDADAFCLQEIKLQENQIELHF----DGYYEYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G + TK KP+ V YG+ G+ + GR+IT +++ + TVY PN+ +L
Sbjct: 56 YANKKGYSGTAIYTKHKPIDVHYGL-GIEEHDMEGRLITLEYENYYIATVYTPNAQPELA 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +R W+ F +Y + +L +II GD+NV Q IDL NP N K G++ EER
Sbjct: 115 RLAYRQKWEDDFREYFK-KLDEKKPVIICGDMNVAHQEIDLKNPKNNRKNPGFSDEEREK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F L+ G +D FR++YPD+ Y++WS+R +AR NN GWR+DY VS++L +K
Sbjct: 174 FTIFLNAGFIDTFRYIYPDKTDEYSWWSYR-FNARKNNAGWRIDYFCVSDRLKEKLKSAS 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I DV GS HCPV + + L
Sbjct: 233 IHQDVMGSDHCPVSIEIEL 251
>gi|116494506|ref|YP_806240.1| exonuclease III [Lactobacillus casei ATCC 334]
gi|191637944|ref|YP_001987110.1| exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227535523|ref|ZP_03965572.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|385819687|ref|YP_005856074.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|385822845|ref|YP_005859187.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|417983078|ref|ZP_12623720.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|417989182|ref|ZP_12629696.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|417992549|ref|ZP_12632904.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|417995780|ref|ZP_12636067.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|417998717|ref|ZP_12638932.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|418004708|ref|ZP_12644721.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|418013374|ref|ZP_12653018.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
gi|116104656|gb|ABJ69798.1| Exonuclease III [Lactobacillus casei ATCC 334]
gi|190712246|emb|CAQ66252.1| Exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227186845|gb|EEI66912.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|327382014|gb|AEA53490.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|327385172|gb|AEA56646.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|410528859|gb|EKQ03697.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|410533128|gb|EKQ07815.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|410536484|gb|EKQ11077.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|410539278|gb|EKQ13814.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|410540321|gb|EKQ14836.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|410548944|gb|EKQ23126.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|410555900|gb|EKQ29831.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
Length = 252
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/255 (41%), Positives = 149/255 (58%), Gaps = 12/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KK+ + E + D LQ+ + Q +V L YH ++
Sbjct: 1 MKLISWNVNGLRAVLKKDFMTIFN-ELDADWFCLQETKMQAGQV----ELDLPGYHQYFN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGV--SNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL V YG+ GV + GR+IT ++ F +TVY PNSG +LK
Sbjct: 56 YAERKGYSGTAIFTKHEPLNVTYGM-GVPEHDTEGRIITLEYPNFYLMTVYTPNSGGELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R WD+ F Y ++L + ++ GDLNV Q IDL N N AG+T EER +
Sbjct: 115 RLDYRQQWDKDFLAYT-NQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERAD 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F + LD+G +D FR+LYPD Y++WS+R AR NN GWR+DY + S I+D
Sbjct: 174 FTKQLDSGFIDTFRNLYPDTV-TYSWWSYR-FHARANNAGWRIDYFVSSRDFKPYIQDAK 231
Query: 309 IRSDVQGSTHCPVVL 323
I +D+ GS HCPV L
Sbjct: 232 ILTDIMGSDHCPVEL 246
>gi|308233639|ref|ZP_07664376.1| exodeoxyribonuclease III Xth [Atopobium vaginae DSM 15829]
gi|328944401|ref|ZP_08241863.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
gi|327490985|gb|EGF22762.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
Length = 259
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 151/266 (56%), Gaps = 13/266 (4%)
Query: 65 RKPYTTKVKVSTWNVNGLRACVKKN-ACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
+ PY + +WNVNGLRA +KK + +E N DI A+Q+ + Q +V L
Sbjct: 4 KHPY----RFVSWNVNGLRATLKKEPSFLEIFSTLNADIFAIQETKLQAGQVD----LDL 55
Query: 124 SHYHMFWIGSD-KGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVP 181
Y W ++ KG G + ++EKPL+ + I ++ GRV +F++F F+ VY P
Sbjct: 56 DGYTQTWSYAERKGYSGTAVFSREKPLSTIHTIGCKAADNEGRVCALEFEKFWFVDVYTP 115
Query: 182 NSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGY 241
NS +L +D RM WD+ + +++ L + +I GD NV Q IDL NP N + AG+
Sbjct: 116 NSKNELARLDERMEWDKAYREFLVG-LDAQKPVITCGDFNVAHQEIDLKNPASNHENAGF 174
Query: 242 TVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLA 301
+ EER F LL G D FR +P EGAY++WS+R +S R N GWR+DY LVS ++A
Sbjct: 175 SDEERAGFSSLLGAGFTDTFRSAHPTLEGAYSWWSYRMRS-RERNAGWRIDYFLVSNRIA 233
Query: 302 NNIKDCIIRSDVQGSTHCPVVLRLSL 327
N + I +++ GS HCPV L L L
Sbjct: 234 NTVTSSAIYNEIYGSDHCPVGLELEL 259
>gi|403385824|ref|ZP_10927881.1| exodeoxyribonuclease [Kurthia sp. JC30]
Length = 252
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 147/258 (56%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RAC+KK + Y + + D +Q+ +CQ +V L Y +W
Sbjct: 1 MKFVSWNVNGIRACLKK-GFLAYFEQVDADFFCIQESKCQAGQV----EIDLPGYEQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK PL+VKYG+ + GR+IT +++RF +TVY PNS L
Sbjct: 56 YALRKGYSGTAIFTKHTPLSVKYGVGDRDTEDEGRIITLEYERFYVVTVYTPNSKRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D R+ W+ + Y+ EL +I GDLNV ++IDL N NV +G+T EER
Sbjct: 116 LDERLEWEDNLRAYL-IELDQQKPVIYCGDLNVAHEAIDLKNAKPNVGNSGFTNEERGKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL++G D FR +YP E+ +T+WS+ NK R N GWR+DY +VS++L ++ + I
Sbjct: 175 TLLLNSGFTDTFRAMYPQEDNRFTWWSYMNK-VRERNIGWRIDYFIVSDRLNQHVTNADI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
GS HCPVVL L +
Sbjct: 234 HDQQLGSDHCPVVLELDI 251
>gi|258539213|ref|YP_003173712.1| exodeoxyribonuclease III [Lactobacillus rhamnosus Lc 705]
gi|385834871|ref|YP_005872645.1| exodeoxyribonuclease III [Lactobacillus rhamnosus ATCC 8530]
gi|257150889|emb|CAR89861.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus Lc 705]
gi|355394362|gb|AER63792.1| exodeoxyribonuclease III [Lactobacillus rhamnosus ATCC 8530]
Length = 252
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 146/254 (57%), Gaps = 10/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA +KK+ + E + D LQ+ + Q +V +Y F
Sbjct: 1 MKMISWNVNGLRAVLKKDFMTIFN-ELDADWFCLQETKMQAGQVELDLP---GYYQYFNY 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KPL V YG+ G+ + GR+IT ++ +F +TVY PNSG +LK
Sbjct: 57 AERKGYSGTAIFTKHKPLNVTYGM-GIPEHDTEGRIITLEYPKFYLMTVYTPNSGGELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R WD+ F Y +EL + ++ GDLNV + IDL N N AG+T EER +F
Sbjct: 116 LDYRQQWDRDFLAYT-NELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ L++G +D FRH YPD Y++WS+R AR NN GWR+DY + S I+D I
Sbjct: 175 TKQLNSGFIDTFRHFYPDTV-TYSWWSYRFH-ARANNAGWRIDYFVASSAFQPYIQDAKI 232
Query: 310 RSDVQGSTHCPVVL 323
+ + GS HCPV L
Sbjct: 233 LTQIMGSDHCPVEL 246
>gi|258507959|ref|YP_003170710.1| exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
gi|257147886|emb|CAR86859.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
Length = 252
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 146/254 (57%), Gaps = 10/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA +KK+ + E + D LQ+ + Q +V +Y F
Sbjct: 1 MKMISWNVNGLRAVLKKDFMTIFN-ELDADWFCLQETKMQAGQVELDLP---GYYQYFNY 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGV--SNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KPL V YG+ G+ + GR+IT ++ +F +TVY PNSG +LK
Sbjct: 57 AERKGYSGTAIFTKHKPLNVTYGM-GIPEHDTEGRIITLEYTKFYLMTVYTPNSGGELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R WD+ F Y +EL + ++ GDLNV + IDL N N AG+T EER +F
Sbjct: 116 LDYRQQWDRDFLAYT-NELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ L++G +D FRH YPD Y++WS+R AR NN GWR+DY + S I+D I
Sbjct: 175 TKQLNSGFIDTFRHFYPDTV-TYSWWSYR-FHARANNAGWRIDYFVASSAFQPYIQDAKI 232
Query: 310 RSDVQGSTHCPVVL 323
+ + GS HCPV L
Sbjct: 233 LTQIMGSDHCPVEL 246
>gi|294674336|ref|YP_003574952.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
gi|294473057|gb|ADE82446.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
Length = 249
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/257 (40%), Positives = 147/257 (57%), Gaps = 12/257 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRAC K + E + D LQ+ + Q ++ +F Y +W
Sbjct: 1 MKLISWNVNGLRACEGK-GFSDTFRELDADFFCLQETKMQAGQLDLAFEG----YESYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK PL+V YGI G+ + GRVIT + + F +T Y PNS LK
Sbjct: 56 YAEKKGYSGTAIFTKHHPLSVTYGI-GIDEHDHEGRVITLEMEDFYLVTCYTPNSQDGLK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y++ L + +I+ GDLNV Q IDL NP N AG+T +ER
Sbjct: 115 RLDYRMTWENDFRAYLKG-LDAKKPVILCGDLNVAHQEIDLKNPKTNRMNAGFTDQEREQ 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL +G D+FR+ YP E+ Y++WS+R + AR N GWR+DY ++S++L + D
Sbjct: 174 FSTLLASGFTDSFRYKYP-EQVTYSWWSYRFQ-ARQKNAGWRIDYFVISDRLRERMDDAR 231
Query: 309 IRSDVQGSTHCPVVLRL 325
I + + GS HCPV L L
Sbjct: 232 IHTQILGSDHCPVELTL 248
>gi|385827641|ref|YP_005865413.1| exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
gi|259649286|dbj|BAI41448.1| exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
Length = 253
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 146/254 (57%), Gaps = 10/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA +KK+ + E + D LQ+ + Q +V +Y F
Sbjct: 2 LKMISWNVNGLRAVLKKDFMTIFN-ELDADWFCLQETKMQAGQVELDLP---GYYQYFNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGV--SNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KPL V YG+ G+ + GR+IT ++ +F +TVY PNSG +LK
Sbjct: 58 AERKGYSGTAIFTKHKPLNVTYGM-GIPEHDTEGRIITLEYTKFYLMTVYTPNSGGELKR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R WD+ F Y +EL + ++ GDLNV + IDL N N AG+T EER +F
Sbjct: 117 LDYRQQWDRDFLAYT-NELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ L++G +D FRH YPD Y++WS+R AR NN GWR+DY + S I+D I
Sbjct: 176 TKQLNSGFIDTFRHFYPDTV-TYSWWSYRFH-ARANNAGWRIDYFVASSAFQPYIQDAKI 233
Query: 310 RSDVQGSTHCPVVL 323
+ + GS HCPV L
Sbjct: 234 LTQIMGSDHCPVEL 247
>gi|229551812|ref|ZP_04440537.1| exodeoxyribonuclease III [Lactobacillus rhamnosus LMS2-1]
gi|421769410|ref|ZP_16206117.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus LRHMDP2]
gi|421772307|ref|ZP_16208963.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus LRHMDP3]
gi|229314756|gb|EEN80729.1| exodeoxyribonuclease III [Lactobacillus rhamnosus LMS2-1]
gi|411183875|gb|EKS51010.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus LRHMDP3]
gi|411184541|gb|EKS51673.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus LRHMDP2]
Length = 253
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 146/254 (57%), Gaps = 10/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA +KK+ + E + D LQ+ + Q +V +Y F
Sbjct: 2 LKMISWNVNGLRAVLKKDFMTIFN-ELDADWFCLQETKMQAGQVELDLP---GYYQYFNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KPL V YG+ G+ + GR+IT ++ +F +TVY PNSG +LK
Sbjct: 58 AERKGYSGTAIFTKHKPLNVTYGM-GIPEHDTEGRIITLEYPKFYLMTVYTPNSGGELKR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R WD+ F Y +EL + ++ GDLNV + IDL N N AG+T EER +F
Sbjct: 117 LDYRQQWDRDFLAYT-NELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ L++G +D FRH YPD Y++WS+R AR NN GWR+DY + S I+D I
Sbjct: 176 TKQLNSGFIDTFRHFYPDTV-TYSWWSYRFH-ARANNAGWRIDYFVASSAFQPYIQDAKI 233
Query: 310 RSDVQGSTHCPVVL 323
+ + GS HCPV L
Sbjct: 234 LTQIMGSDHCPVEL 247
>gi|218281326|ref|ZP_03487814.1| hypothetical protein EUBIFOR_00379 [Eubacterium biforme DSM 3989]
gi|218217511|gb|EEC91049.1| hypothetical protein EUBIFOR_00379 [Eubacterium biforme DSM 3989]
Length = 249
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 152/257 (59%), Gaps = 9/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNG+RA +KK+ VE + + DI +Q+ + Q D++ L Y
Sbjct: 1 MKCISWNVNGIRAVLKKDF-VEILYALDADIFCIQETKAQPDQI--EVDCELYPYQYINS 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + KE+PL+++YG+ + GRVIT ++ + +TVY PNSG LK +
Sbjct: 58 AQKKGYSGTMIFCKEEPLSIRYGMNMEEHDTEGRVITLEYPEYYVVTVYTPNSGDGLKRL 117
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+RM WD+ F Y++S + ++ GD NV + ID+ NP N K AG+T EER +F+
Sbjct: 118 DYRMEWDKAFSAYLKS---LDKPVMACGDFNVANEEIDIKNPKTNHKNAGFTDEERNSFK 174
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
E L VD +R LYP E+ Y++WS+R K AR N GWR+DY LVS +L + I D I
Sbjct: 175 ENLLAYFVDTYRSLYP-EKVEYSWWSYRFK-AREKNAGWRIDYWLVSPELKDKIVDAKIL 232
Query: 311 SDVQGSTHCPVVLRLSL 327
+D+ GS HCPV L + +
Sbjct: 233 TDIYGSDHCPVQLDIEV 249
>gi|145534702|ref|XP_001453095.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420795|emb|CAK85698.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 173/292 (59%), Gaps = 17/292 (5%)
Query: 46 ENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMAL 105
E++ K+ + D E G + T VK+++WNVNG+RA K+ V+Y+ + D++ L
Sbjct: 61 EDKKAKQVQQGDSKFELGDGRFSTPTVKIASWNVNGIRAATKREQAVKYLQDTKFDVICL 120
Query: 106 QQIRCQE-----DEVPESFRKSLSHYHMF--WIGSDKGQGGVGLLTKEKPLTVKYGIPGV 158
+++ + + + F K HY ++ + + G GV + +K KP++VK I G+
Sbjct: 121 NELKADQAVFDKENLGAQFGK---HYFLYLNFCKNKGGYSGVAIASKVKPISVKCDI-GI 176
Query: 159 S--NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNII 215
S +Q GR +TA+++RF + YVPN+G KL+ +D+R WD F +Y++ +LR I
Sbjct: 177 SKHDQEGRTLTAEYERFYLVACYVPNAGQKLERLDYRTKEWDVDFQNYLE-DLRKKKPTI 235
Query: 216 ISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYW 275
+ GDLNV IDLANP N KTAG+T EER F L G VD+FRHL+P +E Y+Y+
Sbjct: 236 LCGDLNVSHHEIDLANPAGNKKTAGFTQEERDQFTNYLQKGWVDSFRHLHP-KEVKYSYF 294
Query: 276 SFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
S R S + +NKGWRLDY +++++ + I I + V+GS H P+ + L
Sbjct: 295 SARFNS-KQSNKGWRLDYFIINKESTDAIIMSDINTAVEGSDHVPIECEVDL 345
>gi|189235831|ref|XP_966759.2| PREDICTED: similar to ap endonuclease, partial [Tribolium
castaneum]
Length = 344
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 156/268 (58%), Gaps = 14/268 (5%)
Query: 19 KKQVKFDISRKKKKMKRSADVIQKSDDENQIPK-------KQVKFDISHEEGSRKPYTTK 71
K++ + + ++K +K K A + D + PK + + F + + S K
Sbjct: 79 KEETQVEEAKKPQKRKAVASKKETEPDSTKAPKNSTVTNWENINFKCTTK--SPKGKAPN 136
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++TWNV GLR+ +KK C++ + + PDI+ +Q+ +C D++PE K++ Y W
Sbjct: 137 FHITTWNVGGLRSWLKK-GCLDILKYDEPDILCIQETKCAVDKLPEEV-KTIEGYETLWC 194
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
SDK G GVG++ K+KPL V YGI + GR IT +++ F + VYVPN+G KL
Sbjct: 195 SSDKDGYAGVGIMVKDKPLNVIYGIDSKEHDTEGRCITVEYETFFVVNVYVPNAGRKLVT 254
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ R+ W++ F +I++ L S +II GD+NV + IDLANP N K AG+TVEER
Sbjct: 255 LPKRLDWNEQFEKFIKN-LDSQKPVIICGDMNVAHKEIDLANPKTNTKNAGFTVEERDGM 313
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSF 277
L G VD +RHLYP++E AYT+W++
Sbjct: 314 TAFLGNGYVDIYRHLYPEKEKAYTFWTY 341
>gi|261366200|ref|ZP_05979083.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
gi|282572018|gb|EFB77553.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
Length = 251
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 143/260 (55%), Gaps = 13/260 (5%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQ---EDEVPESFRKSLSHYHM 128
+K +WNVNGLRAC+KK E + D +Q+ + Q D PE + + +
Sbjct: 1 MKFVSWNVNGLRACLKK-GFEETFRTLDADFFCIQETKMQPGQADFAPEGYTEYI----- 54
Query: 129 FWIGSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKL 187
+ KG G + + L+V+YG+ + N GR IT ++ F + +YVPNS +L
Sbjct: 55 -YSADKKGYSGTAIWARTPALSVRYGLEEDLHNHEGRAITLEYPDFYLVNLYVPNSQNEL 113
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
ID+RM W+ Y+Q+ L + +I+ GDLNV IDL NP N AG++ +ER
Sbjct: 114 ARIDYRMQWEDDLRRYLQA-LDAQKPVILCGDLNVAHTEIDLKNPGPNRGAAGFSDQERG 172
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
ELL G D FRHL+PD G Y++WS R + AR N GWR+DY LVS +LA I+
Sbjct: 173 KLDELLAAGFTDTFRHLHPDATGIYSWWSMRFR-ARERNAGWRIDYFLVSNRLAPQIRKA 231
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
I D+ GS HCPV L L L
Sbjct: 232 DILMDILGSDHCPVTLELDL 251
>gi|301066021|ref|YP_003788044.1| exonuclease III [Lactobacillus casei str. Zhang]
gi|417980207|ref|ZP_12620888.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
gi|300438428|gb|ADK18194.1| Exonuclease III [Lactobacillus casei str. Zhang]
gi|410525434|gb|EKQ00336.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
Length = 252
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 106/255 (41%), Positives = 148/255 (58%), Gaps = 12/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KK + E + D LQ+ + Q +V L YH ++
Sbjct: 1 MKLISWNVNGLRAVLKKEFMTIFN-ELDADWFCLQETKMQAGQV----ELDLPGYHQYFN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGV--SNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL V YG+ GV + GR+IT ++ F +TVY PNSG +LK
Sbjct: 56 YAERKGYSGTAIFTKHEPLNVTYGM-GVPEHDTEGRIITLEYPNFYLMTVYTPNSGGELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R WD+ F Y ++L + ++ GDLNV Q IDL N N AG+T EER +
Sbjct: 115 RLDYRQQWDKDFLAYT-NQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERAD 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F + LD+G +D FR+LYPD Y++WS+R AR NN GWR+DY + S I+D
Sbjct: 174 FTKQLDSGFIDTFRNLYPDTV-TYSWWSYR-FHARANNAGWRIDYFVSSRDFKPYIQDAK 231
Query: 309 IRSDVQGSTHCPVVL 323
I +D+ GS HCPV L
Sbjct: 232 ILTDIMGSDHCPVEL 246
>gi|302334904|ref|YP_003800111.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
gi|301318744|gb|ADK67231.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
Length = 263
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 148/259 (57%), Gaps = 9/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
+K+ +WNVNGLRA ++K+ I + + D+ A+Q+ + QE +V L Y W
Sbjct: 11 LKLVSWNVNGLRAVMRKDPSFLQIFSQLDADVFAIQETKLQEGQV----ELDLPGYFQTW 66
Query: 131 -IGSDKGQGGVGLLTKEKPLTVKYGIPG-VSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + ++E PL V I V++ GRV +F F F+ VY PNS L
Sbjct: 67 NFAERKGYSGTAVFSREDPLRVIRQIGSDVADDEGRVCALEFPTFWFVDVYTPNSKQGLA 126
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
I+ RM WD+ F ++ EL ++ I+ GD NV Q IDL NP N + G++ ER +
Sbjct: 127 RIEERMGWDERFRLFLL-ELDAHKPIVTCGDFNVAHQEIDLRNPSTNHENPGFSDAERDS 185
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LLD G D FR L PD EGAY++WS+R + AR N GWR+DY L SE++A+ I+
Sbjct: 186 FGRLLDAGFTDTFRSLNPDLEGAYSWWSYRMR-ARERNVGWRIDYFLTSERVADRIEGAS 244
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +V GS HCP+ L++ L
Sbjct: 245 IHDEVFGSDHCPIELQIRL 263
>gi|418001612|ref|ZP_12641751.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
gi|410546206|gb|EKQ20470.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
Length = 252
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 106/255 (41%), Positives = 148/255 (58%), Gaps = 12/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KK+ + E + D LQ+ + Q +V L YH ++
Sbjct: 1 MKLISWNVNGLRAVLKKDFMTIFN-ELDADWFCLQETKMQAGQV----ELDLPGYHQYFN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGV--SNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL V YG+ GV + GR+IT ++ F +TVY PNSG +LK
Sbjct: 56 YAERKGYSGTAIFTKHEPLNVTYGM-GVPEHDTEGRIITLEYPNFYLMTVYTPNSGGELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R WD+ F Y ++L + ++ GDLNV Q IDL N N AG+T EER +
Sbjct: 115 RLDYRQQWDKDFLAYT-NQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERAD 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F + LD G +D FR+LYPD Y++WS+R AR NN GWR+DY + S I+D
Sbjct: 174 FTKQLDGGFIDTFRNLYPDTV-TYSWWSYR-FHARANNAGWRIDYFVSSRDFKPYIQDAK 231
Query: 309 IRSDVQGSTHCPVVL 323
I +D+ GS HCPV L
Sbjct: 232 ILTDIMGSDHCPVEL 246
>gi|319954545|ref|YP_004165812.1| exodeoxyribonuclease iii xth [Cellulophaga algicola DSM 14237]
gi|319423205|gb|ADV50314.1| exodeoxyribonuclease III Xth [Cellulophaga algicola DSM 14237]
Length = 254
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 157/260 (60%), Gaps = 10/260 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+ + +WNVNG+RA VKK+ E + PDI+ LQ+ + Q+ EV ++ +SLS++ +
Sbjct: 1 MHIVSWNVNGIRAAVKKD-FFEAVKTMAPDILCLQETKAQDSEVAKAL-ESLSNFSLNSN 58
Query: 132 GSDK-GQGGVGLLTKEKPL--TVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G G +L+K+ P+ T GI V + GR++ ++ F + VYVPNSG KL
Sbjct: 59 SADKKGYSGTAILSKQAPISATPNMGIE-VHDTEGRILCTEYDSFYLVNVYVPNSGQKLD 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEERR 247
+++R WD+ F Y+++ L +I GD NV Q+IDL N N KTAGYT E
Sbjct: 118 RLEYRQQWDKDFLAYLKN-LEKKKPVIACGDFNVAHQAIDLKNDKANYNKTAGYTQIEID 176
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
+ VD+FR L+PDE AYT+WS+R KS R N GWR+DY LVS+ +A+ IK
Sbjct: 177 GMDNFIANDFVDSFRALHPDEV-AYTFWSYRFKS-RERNTGWRIDYFLVSKAIADKIKKV 234
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCP+ + LS+
Sbjct: 235 TIYADIMGSDHCPIGITLSI 254
>gi|409996804|ref|YP_006751205.1| exodeoxyribonuclease [Lactobacillus casei W56]
gi|406357816|emb|CCK22086.1| Exodeoxyribonuclease [Lactobacillus casei W56]
Length = 290
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 106/255 (41%), Positives = 149/255 (58%), Gaps = 12/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KK+ + E + D LQ+ + Q +V L YH ++
Sbjct: 39 MKLISWNVNGLRAVLKKDFMTIFN-ELDADWFCLQETKMQAGQV----ELDLPGYHQYFN 93
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGV--SNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL V YG+ GV + GR+IT ++ F +TVY PNSG +LK
Sbjct: 94 YAERKGYSGTAIFTKHEPLNVTYGM-GVPEHDTEGRIITLEYPNFYLMTVYTPNSGGELK 152
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R WD+ F Y ++L + ++ GDLNV Q IDL N N AG+T EER +
Sbjct: 153 RLDYRQQWDKDFLAYT-NQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERAD 211
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F + LD+G +D FR+LYPD Y++WS+R AR NN GWR+DY + S I+D
Sbjct: 212 FTKQLDSGFIDTFRNLYPDTV-TYSWWSYR-FHARANNAGWRIDYFVSSRDFKPYIQDAK 269
Query: 309 IRSDVQGSTHCPVVL 323
I +D+ GS HCPV L
Sbjct: 270 ILTDIMGSDHCPVEL 284
>gi|293115606|ref|ZP_05792271.2| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
gi|292809044|gb|EFF68249.1| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
Length = 237
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 143/232 (61%), Gaps = 10/232 (4%)
Query: 99 NPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSDKGQGGVGLLTKEKPLTVKYGIPG 157
+ DI LQ+I+ E ++ + +Y+ +W KG G + +KEKPL+VKYGI G
Sbjct: 13 DADIFCLQEIKLSEGQI----EWNKENYYSYWNYAEKKGYSGTAVFSKEKPLSVKYGI-G 67
Query: 158 VS--NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNII 215
+ + GRVIT +F+ F +TVY PNS +L +++RM W+ F +++ ++LR ++
Sbjct: 68 IDEHDHEGRVITLEFENFYMVTVYTPNSQRELTRLEYRMKWEDDFRNFL-NDLRKTKPVV 126
Query: 216 ISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYW 275
++GD+NV + IDL NP N K AG+T EER+ ELLD+G +D FR+ YPD E Y++W
Sbjct: 127 VTGDMNVAHKEIDLKNPKTNRKNAGFTDEERQKMTELLDSGFIDTFRYFYPDVEQKYSWW 186
Query: 276 SFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
S+ KS R N GWR+DY L S++L + + I V GS HCP+ L + L
Sbjct: 187 SYMFKS-REKNAGWRIDYFLASKELEDRLISAEIHDKVLGSDHCPIELVIDL 237
>gi|420437930|ref|ZP_14936910.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
gi|393050857|gb|EJB51811.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
Length = 243
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 146/249 (58%), Gaps = 9/249 (3%)
Query: 79 VNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSDKGQ 137
+NGLRAC+ K +++ + D+ +Q+ + Q+++ F+ Y FW KG
Sbjct: 1 MNGLRACMTK-GFMDFFNSVDADVFCIQESKMQQEQNTFEFKG----YFDFWNCAIKKGY 55
Query: 138 GGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIW 196
GV TK++PL+V YGI ++ GRVIT +F+ F + VY PNS L + +RM W
Sbjct: 56 SGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALFRLSYRMSW 115
Query: 197 DQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTG 256
+ F ++++ L +I+ GDLNV IDL NP N K AG++ EER F ELL+ G
Sbjct: 116 EVEFKKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAG 174
Query: 257 LVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGS 316
+D FR+ YP++E AYT+WS+ + AR + GWR+DY L S L +KD +I D+ GS
Sbjct: 175 FIDTFRYFYPNKEKAYTWWSYM-QQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGS 233
Query: 317 THCPVVLRL 325
HCPV L L
Sbjct: 234 DHCPVGLEL 242
>gi|373461425|ref|ZP_09553165.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
gi|371952383|gb|EHO70222.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
Length = 251
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 150/259 (57%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
K +WNVNGLRACV K+ + N D LQ+ + Q ++ F Y FW
Sbjct: 2 TKFVSWNVNGLRACVSKD-FAQTFETLNADFFCLQETKMQAGQLDLQF----PGYTSFWN 56
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+DK G G + +++PL+V YGI G+ + GRVIT +++ F + VY PN+ L+
Sbjct: 57 YADKKGYSGTAIYARKEPLSVAYGI-GIDEHDHEGRVITLEYEDFYLVNVYTPNAQDGLR 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM W+ F Y+ L + +I+ GD+NV + IDL NP N + AG+T EER
Sbjct: 116 RLDYRMTWEDDFQAYLH-RLDARKPVIVCGDMNVAHEEIDLKNPKTNHRNAGFTDEERAK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+LL G D FR+LYP E Y++WS+R + AR N GWR+DY L+S++L +K+
Sbjct: 175 MTQLLGNGFTDTFRNLYP-EAIKYSWWSYRFR-AREKNTGWRIDYFLISDRLRPRLKEAA 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +++ GS HCPV + L L
Sbjct: 233 IHNEIFGSDHCPVEVDLDL 251
>gi|366086404|ref|ZP_09452889.1| exodeoxyribonuclease III [Lactobacillus zeae KCTC 3804]
Length = 252
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 147/254 (57%), Gaps = 10/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA +KK+ + E + D LQ+ + Q +V +Y F
Sbjct: 1 MKLISWNVNGLRAVLKKDFMTIFN-ELDADWFCLQETKMQAGQVKLDLP---GYYQYFNY 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK +PL V YG+ G+ ++ GR+IT ++ +F +TVY PNSG +LK
Sbjct: 57 AERKGYSGTAIFTKHEPLNVTYGM-GIPEHDKEGRIITLEYPKFYLMTVYTPNSGGELKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R WD+ F Y ++L ++ GDLNV + IDL N N AG+T EER +F
Sbjct: 116 LDYRQQWDKDFRAYT-NQLAEKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ L +G +D FRHLYP+ Y++WS+R AR NN GWR+DY + S +KD I
Sbjct: 175 TKQLKSGFIDTFRHLYPNTV-TYSWWSYR-FHARANNAGWRIDYFVASSNFQPYVKDAKI 232
Query: 310 RSDVQGSTHCPVVL 323
+DV GS HCPV L
Sbjct: 233 LTDVMGSDHCPVEL 246
>gi|417986286|ref|ZP_12626858.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
gi|410526479|gb|EKQ01366.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
Length = 252
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 149/255 (58%), Gaps = 12/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KK+ + E + D LQ+ + Q +V L YH ++
Sbjct: 1 MKLISWNVNGLRAVLKKDFMTIFN-ELDADWFCLQETKMQAGQV----ELDLPGYHQYFN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGV--SNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL V YG+ GV + GR+IT ++ F +TVY PNSG +LK
Sbjct: 56 YAERKGYSGTAIFTKHEPLNVTYGM-GVPEHDTEGRIITLEYPNFYLMTVYTPNSGGELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R WD+ F Y ++L + ++ GDLNV Q IDL N N AG+T EER +
Sbjct: 115 RLDYRQQWDKDFLAYT-NQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERAD 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F + LD+G +D FR+LYPD Y++WS+R AR NN GWR+DY + S I+D
Sbjct: 174 FTKQLDSGFIDTFRNLYPDTV-TYSWWSYR-FHARANNAGWRIDYFVSSRNFKPYIQDAK 231
Query: 309 IRSDVQGSTHCPVVL 323
I +++ GS HCPV L
Sbjct: 232 ILTEIMGSDHCPVEL 246
>gi|403366756|gb|EJY83183.1| Exodeoxyribonuclease III family protein [Oxytricha trifallax]
Length = 620
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 163/282 (57%), Gaps = 11/282 (3%)
Query: 52 KQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQ 111
+Q++ ++ +E ++ +++++ +WNVNG+RA +KKN E+ + NP I+ +Q+ +
Sbjct: 215 RQIQRPMNIQEQNQNIDMSRLQIWSWNVNGIRAILKKNRIQEFFEQANPTILCVQESKID 274
Query: 112 E-----DEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGR 164
E D+V + F Y KG G + +K KP++V Y I GV ++ GR
Sbjct: 275 EERMAADKVKDKFPADYLQYWNCCKPPIKGYAGTIIFSKIKPISVSYDI-GVHKHDKEGR 333
Query: 165 VITAKFKRFTFITVYVPNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVC 223
IT +F++F + VYVPNSG LK D+R WD F Y++ R +I+ GD+NV
Sbjct: 334 TITLEFEKFFLVGVYVPNSGATLKWHDYRCSEWDLDFRAYLKGLERRGKPVILCGDMNVA 393
Query: 224 LQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSAR 283
Q ID+ +P +N + A +T EER++F G VD FR LYP + Y++W R+KS R
Sbjct: 394 HQEIDIFDPKRNERMACFTNEERQSFSNFTKMGFVDTFRELYPGKI-KYSFWDIRDKS-R 451
Query: 284 LNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRL 325
NKGWRLDY +VS Q+ + + D I ++ GS HCPV L L
Sbjct: 452 KENKGWRLDYFMVSRQIKHALTDAEIHNEFWGSDHCPVSLTL 493
>gi|357125454|ref|XP_003564409.1| PREDICTED: apurinic endonuclease-redox protein-like isoform 2
[Brachypodium distachyon]
Length = 493
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/269 (40%), Positives = 161/269 (59%), Gaps = 15/269 (5%)
Query: 69 TTKVKVSTWNVNGLRACVKKN--ACVEYILEENPDIMALQQIRCQEDEVPESFRKSL--S 124
T +K+ +WNVNGL+A VK + E E+ D++ LQ+ + Q+ +V E ++SL
Sbjct: 230 TRALKILSWNVNGLKALVKSRGFSVHELAQREDFDVLCLQETKMQDKDV-EVIKESLLEG 288
Query: 125 HYHMFWIGS--DKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYV 180
+ + FW S G G ++++ KPL++KYG+ GV + GRV+T +F F +T YV
Sbjct: 289 YTNSFWTCSVSKLGYSGTAIISRVKPLSIKYGL-GVPDHDTEGRVVTVEFDDFYLLTAYV 347
Query: 181 PNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTA 239
PNSG L+ + +R+ WD +Y++ EL + +I++GDLN Q ID+ +P N ++A
Sbjct: 348 PNSGDGLRRLTYRVTEWDPCLGNYMK-ELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSA 406
Query: 240 GYTVEERRNFR-ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSE 298
G+T EER +F L G VD FR +PD G Y+YW +R+ +AR NKGWRLDY LVSE
Sbjct: 407 GFTKEERESFETNFLSKGFVDTFRKQHPDVVG-YSYWGYRH-NARKTNKGWRLDYFLVSE 464
Query: 299 QLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+A + D I D+ S H P+ L L L
Sbjct: 465 SIAERVHDSYILPDISASDHSPLGLVLKL 493
>gi|303237381|ref|ZP_07323951.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
gi|302482768|gb|EFL45793.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
Length = 250
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 147/259 (56%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRACV K E + D LQ+ + Q ++ +F Y +W
Sbjct: 1 MKFISWNVNGLRACVTK-GFKESFEAIDADFFCLQETKMQAGQLDIAF----DGYESYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL V YG+ G+ + GRVIT + + F +T Y PNS LK
Sbjct: 56 YAEKKGYSGTAIFTKHQPLNVTYGL-GIEEHDHEGRVITLEMENFYLVTCYTPNSQDGLK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F YI+ L +I+ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLEYRMRWEDDFQTYIK-RLDEKKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+ L G +D+FR LYP E+ Y++WS+R K AR N GWR+DY L+S++L + D
Sbjct: 174 MTQFLGKGFIDSFRTLYP-EQVTYSWWSYRFK-AREKNAGWRIDYFLLSDRLRAQLVDAK 231
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I ++V GS HCPV + L+
Sbjct: 232 IHTEVYGSDHCPVEVELNF 250
>gi|148927710|ref|ZP_01811154.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp.
GTL1]
gi|147886940|gb|EDK72466.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp.
GTL1]
Length = 266
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 144/271 (53%), Gaps = 22/271 (8%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA V K A +++ E +PDI+ LQ+ + + + L HY W
Sbjct: 1 MKIYSWNVNGIRAVVNKGAFQKFVKEHDPDILCLQETKAERGQA----EIDLPHYIENWN 56
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIP--------------GVSNQRGRVITAKFKRFTFI 176
+ KG G + +K +PL++ G P G N+ GRV+ A+F+ F +
Sbjct: 57 SAVKKGYSGTAIFSKTQPLSIINGFPEDIIKKYKVEGDVYGDPNKEGRVMAAEFEDFYIV 116
Query: 177 TVYVPNSGIKLKAIDFR-MIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKN 235
TVY PNS +L + R WD F Y++ +L +I GDLNV DLA PD N
Sbjct: 117 TVYTPNSKRELTRLTLREKHWDPAFLAYVK-QLEKTKPVIFCGDLNVAHTEDDLARPDTN 175
Query: 236 VKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHL 295
G+T EER F++ LD G VD FR P G YT+W+ +AR N GWR+DY L
Sbjct: 176 HGEHGFTDEEREGFQKFLDAGFVDTFRMFTPKGNGHYTWWT-HWANARARNVGWRIDYFL 234
Query: 296 VSEQLANNIKDCIIRSDVQGSTHCPVVLRLS 326
VS L + +K I +DV GS HCP+ + L
Sbjct: 235 VSHALKSKVKSAKIHADVMGSDHCPISIELG 265
>gi|313676472|ref|YP_004054468.1| exodeoxyribonuclease iii [Marivirga tractuosa DSM 4126]
gi|312943170|gb|ADR22360.1| exodeoxyribonuclease III [Marivirga tractuosa DSM 4126]
Length = 255
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 156/258 (60%), Gaps = 6/258 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+ + ++NVNG+RA +K +++ EE PD+ LQ+++ +V S ++L YH++W
Sbjct: 1 MNIISYNVNGIRAAERK-GLSQWLEEEKPDVFCLQELKANRSDVDLSVFENLG-YHIYWH 58
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
++K G GVG+ TK KP V+ G + ++ GRVI A F+ F+ + Y+P+
Sbjct: 59 SAEKKGYSGVGIFTKVKPNNVEIGCNMDIYDREGRVIRADFENFSVLNTYMPSGSSGDPR 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
DF+M W F YIQ + N++I GD N+C Q+ID+ +P +N ++G+ EER
Sbjct: 119 QDFKMQWLSDFRAYIQDLKQEIPNLLICGDYNICHQAIDIHDPVRNKNSSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ L+ G +D+FRHL E Y++WS+R+ +AR NKGWR+DYH++SE L N +K I
Sbjct: 179 TDFLNDGFIDSFRHL-NKEPDQYSWWSYRS-AARERNKGWRIDYHMISENLKNQLKAADI 236
Query: 310 RSDVQGSTHCPVVLRLSL 327
DV+ S HCP+ + L +
Sbjct: 237 LQDVKHSDHCPIKVELDV 254
>gi|199597303|ref|ZP_03210734.1| Exonuclease III [Lactobacillus rhamnosus HN001]
gi|199591819|gb|EDY99894.1| Exonuclease III [Lactobacillus rhamnosus HN001]
Length = 253
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 146/254 (57%), Gaps = 10/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA +KK+ + E + D LQ+ + Q +V +Y F
Sbjct: 2 LKMISWNVNGLRAVLKKDFMTIFN-ELDADWFCLQETKMQAGQVELDLP---GYYQYFNY 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGV--SNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK KPL V YG+ G+ + GR+IT ++ +F +TVY PNSG +LK
Sbjct: 58 AERKGYSGTAIFTKHKPLNVTYGM-GIPEHDTEGRIITLEYTKFYLMTVYTPNSGGELKR 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+R WD+ F Y +EL + ++ GDLNV + IDL N N AG+T EER +F
Sbjct: 117 LDYRQQWDRDFLAYT-NELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADF 175
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ L++G +D FRH YPD Y++WS+ + AR NN GWR+DY + S I+D I
Sbjct: 176 TKQLNSGFIDTFRHFYPDTV-TYSWWSY-HFHARANNAGWRIDYFVASSAFQPYIQDAKI 233
Query: 310 RSDVQGSTHCPVVL 323
+ + GS HCPV L
Sbjct: 234 LTQIMGSDHCPVEL 247
>gi|336396024|ref|ZP_08577423.1| exonuclease III [Lactobacillus farciminis KCTC 3681]
Length = 253
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 158/259 (61%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM-FW 130
+K+ +WNVNGLRA VKK+ + + N D+ ++Q+ + Q ++ L YH F+
Sbjct: 1 MKLISWNVNGLRAVVKKDFVTTF-QQLNADVFSIQETKMQAGQL----DLDLPGYHQYFF 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K +P++VK G+ G+ + GR IT +F + I Y PNS KLK
Sbjct: 56 YAKKKGYSGTAVFSKAEPISVKQGL-GIEEFDDEGRTITLEFPDYYLINSYTPNSQPKLK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM +D +Y+ +L ++ +I+ GDLNV + IDL NP N K G++ +ER
Sbjct: 115 RVDYRMRYDDVLREYML-QLSADKPVILCGDLNVAHEEIDLKNPKTNHKNPGFSDQERDK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ELLD+G +D+FR L+P +E Y++WS+R +AR NN GWR+DY +VS+ I+D
Sbjct: 174 FSELLDSGFIDSFRSLHP-QEIKYSWWSYR-FNARKNNAGWRIDYFVVSKNGQQLIQDAD 231
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCP+ L L++
Sbjct: 232 ILTDIYGSDHCPIELDLNI 250
>gi|357125452|ref|XP_003564408.1| PREDICTED: apurinic endonuclease-redox protein-like isoform 1
[Brachypodium distachyon]
Length = 516
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/269 (40%), Positives = 161/269 (59%), Gaps = 15/269 (5%)
Query: 69 TTKVKVSTWNVNGLRACVKKN--ACVEYILEENPDIMALQQIRCQEDEVPESFRKSL--S 124
T +K+ +WNVNGL+A VK + E E+ D++ LQ+ + Q+ +V E ++SL
Sbjct: 253 TRALKILSWNVNGLKALVKSRGFSVHELAQREDFDVLCLQETKMQDKDV-EVIKESLLEG 311
Query: 125 HYHMFWIGSDK--GQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYV 180
+ + FW S G G ++++ KPL++KYG+ GV + GRV+T +F F +T YV
Sbjct: 312 YTNSFWTCSVSKLGYSGTAIISRVKPLSIKYGL-GVPDHDTEGRVVTVEFDDFYLLTAYV 370
Query: 181 PNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTA 239
PNSG L+ + +R+ WD +Y++ EL + +I++GDLN Q ID+ +P N ++A
Sbjct: 371 PNSGDGLRRLTYRVTEWDPCLGNYMK-ELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSA 429
Query: 240 GYTVEERRNFR-ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSE 298
G+T EER +F L G VD FR +PD G Y+YW +R+ +AR NKGWRLDY LVSE
Sbjct: 430 GFTKEERESFETNFLSKGFVDTFRKQHPDVVG-YSYWGYRH-NARKTNKGWRLDYFLVSE 487
Query: 299 QLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+A + D I D+ S H P+ L L L
Sbjct: 488 SIAERVHDSYILPDISASDHSPLGLVLKL 516
>gi|403669653|ref|ZP_10934844.1| exodeoxyribonuclease [Kurthia sp. JC8E]
Length = 253
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 144/258 (55%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNG+RAC+KK + Y E + D +Q+ +CQ +V L Y +W
Sbjct: 1 MKFVSWNVNGIRACLKK-GWLTYFQEVDADFFCIQETKCQAGQV----EIDLPGYEQYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + TK PL+VKYG+ + GR+IT +++ F +TVY PNS L
Sbjct: 56 YALKKGYSGTAIFTKHTPLSVKYGVGDHETEDEGRIITLEYENFYVVTVYTPNSKRDLAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
++ R++W+ Y+Q +L + +I GDLNV + IDL N NV +G+T ER
Sbjct: 116 LEERLVWEDDLRVYLQ-QLDAQKPVIYCGDLNVAHEEIDLKNAKSNVGNSGFTDGERSKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL++G D+FRH YP E +T+WS+ NK R N GWR+DY +VS++L I+ I
Sbjct: 175 TLLLNSGFTDSFRHKYPTESNRFTWWSYMNK-VRERNIGWRIDYFIVSDRLVPQIETAEI 233
Query: 310 RSDVQGSTHCPVVLRLSL 327
GS HCP+ L L +
Sbjct: 234 HDQQLGSDHCPIALTLHV 251
>gi|406666269|ref|ZP_11074037.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
gi|405385808|gb|EKB45239.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
Length = 252
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 147/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNG+RACV K ++Y E + D LQ+ +CQ ++ L Y+ +W
Sbjct: 1 MKFISWNVNGIRACVNK-GFLDYFREMDADFFCLQETKCQVGQID----LQLEGYYQYWH 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPG-VSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG G + TK +PL V YGI ++ GR++T +++ F + Y PN+ L
Sbjct: 56 SAVKKGYSGTAVFTKHEPLAVYYGIENEIAADEGRILTLEYENFYLVNTYTPNAKRDLTR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
++ R++W+ Y++ EL + +I GDLNV +D+ N N+ +G+T EER
Sbjct: 116 LEERLLWEDRMRIYLK-ELDAKKPVIYCGDLNVAHSELDIKNVKSNIGNSGFTYEERGKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL +G D FRH +PD +T+WS+ K R N GWR+DY ++S++L I++ I
Sbjct: 175 TDLLTSGFTDTFRHFHPDVTDHFTWWSYMAK-VRERNIGWRIDYFIISDRLVEKIEEASI 233
Query: 310 RSDVQGSTHCPVVLRL 325
S++ GS HCP+VL+L
Sbjct: 234 HSEILGSDHCPIVLKL 249
>gi|356537505|ref|XP_003537267.1| PREDICTED: LOW QUALITY PROTEIN: apurinic endonuclease-redox
protein-like [Glycine max]
Length = 543
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/268 (39%), Positives = 158/268 (58%), Gaps = 13/268 (4%)
Query: 69 TTKVKVSTWNVNGLRACVKKN--ACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHY 126
T VK+ +WN NGLRA +K + ++ E+ D++ LQ + QE ++ E + Y
Sbjct: 280 TKFVKLLSWNANGLRALLKLEGFSALQLAQREDFDVLCLQXTKLQEKDIEEIKHHLIDGY 339
Query: 127 -HMFWIGS--DKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYVP 181
+ FW S G G ++++ KPL+V+YG+ G+S+ GR++TA+F F I YVP
Sbjct: 340 DNSFWTFSVSKLGYSGTAIISRIKPLSVRYGL-GISDHDSEGRLVTAEFDTFYLICGYVP 398
Query: 182 NSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
NSG LK + +R+ WD +Y++ EL + +I++GDLN + ID+ NP N ++AG
Sbjct: 399 NSGDGLKRLSYRVTEWDPSLSNYLK-ELEKSKPVILTGDLNCAHEEIDIYNPAGNKRSAG 457
Query: 241 YTVEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
T EER++F L G VD FR +P G YTYW +R+ R N+GWRLDY LVSE
Sbjct: 458 LTDEERKSFATNFLSRGFVDTFRRQHPGVIG-YTYWGYRH-GGRKFNRGWRLDYFLVSES 515
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+A+ + D I DV GS HCP+ L + L
Sbjct: 516 IADKVHDSYILPDVTGSDHCPIGLVVKL 543
>gi|187735459|ref|YP_001877571.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
gi|187425511|gb|ACD04790.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
Length = 253
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 149/256 (58%), Gaps = 7/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA + K + + PD++ LQ+I+ + ++V + + S H W
Sbjct: 1 MKLVSWNVNGLRAVLGKGM-ADAVDALEPDVLCLQEIKARPEQVKDLWISSWPH--QLWN 57
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
++K G GV +L++ +PL+ GI + R GRV T +F+ F + Y PNS +L
Sbjct: 58 PAEKAGYSGVLILSRVRPLSTSVGIGWPEHDREGRVCTMEFEGFYLVNCYTPNSQNELVR 117
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +R WD F +Y+ L ++ GDLNV + ID+A P +N +AG++ +ER F
Sbjct: 118 LPYREQWDAAFREYVAG-LAETKPVVFCGDLNVAHEEIDIARPKENRFSAGFSDQERAGF 176
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL+ G D FR L+P+E G Y++WS+R AR N GWR+DY VS LA+ +KD I
Sbjct: 177 TLLLEAGFTDTFRALHPEEPGWYSWWSYR-AGARARNIGWRIDYFCVSNPLASRVKDAAI 235
Query: 310 RSDVQGSTHCPVVLRL 325
DV GS HCPV L +
Sbjct: 236 HPDVTGSDHCPVSLEI 251
>gi|344942649|ref|ZP_08781936.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
gi|344259936|gb|EGW20208.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
Length = 254
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 150/259 (57%), Gaps = 8/259 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNG+RA V+ E + + D + LQ+ + Q D++ ++ + + Y ++
Sbjct: 1 MKIISWNVNGVRA-VQSKGFAETLALLDADCILLQETKAQADQIDKAL-EGIDGYRVYSN 58
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +L++++PL V I V + R GRVI A+F+ F + VYVPNSG L
Sbjct: 59 CAERKGYSGVTILSRKEPLQVISDIGIVEHDREGRVIVAEFENFFLLNVYVPNSGEALAR 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEERRN 248
+D+R WD F Y + +L+ +I GD NV Q ID+A P N K+AGYT E
Sbjct: 119 LDYRQTWDIEFLAYCR-QLQKKKPLIACGDFNVAHQEIDIARPKPNYNKSAGYTQVEIDG 177
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LD GLVD FRH +PD AY++WSFR AR N GWR+DY L S+ LA N+K
Sbjct: 178 FSRFLDAGLVDTFRHFHPDTV-AYSWWSFRG-GARARNVGWRIDYVLTSKTLAGNVKQAF 235
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I ++ GS HCPV + +
Sbjct: 236 ILPEISGSDHCPVGIEIDF 254
>gi|339446107|ref|YP_004712111.1| hypothetical protein EGYY_27130 [Eggerthella sp. YY7918]
gi|338905859|dbj|BAK45710.1| hypothetical protein EGYY_27130 [Eggerthella sp. YY7918]
Length = 285
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 148/291 (50%), Gaps = 41/291 (14%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
++ +WNVNGLRA + K + + E + DI+ALQ+ + QE + L Y +W
Sbjct: 1 MRFISWNVNGLRAVLNK-GFEDIVCEIDADIVALQETKLQEGQA----TLDLPQYREYWS 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPG-VSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + KE+PL V +G+ + GR++ +F F F+ VY PN+ +L
Sbjct: 56 YAQKKGYSGTAVFCKEQPLQVLHGLGSDYLDAEGRIVALEFPGFWFVDVYTPNAQNELAR 115
Query: 190 IDFRMIWDQHFYDYIQS---------------------------------ELRSNSNIII 216
I RM WD F D+ + E +++
Sbjct: 116 IAHRMQWDDAFRDFCKGLEEGVLPAGVPVQRPAPGEGHVTISELPLTQPGESTDPKPVVM 175
Query: 217 SGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWS 276
GD NV Q IDL NP N AG++ EER F +LLD G VD+FRHL+PD GAY++WS
Sbjct: 176 CGDFNVAHQEIDLKNPGPNRGKAGFSDEERGKFTDLLDAGFVDSFRHLHPDVTGAYSWWS 235
Query: 277 FRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+R K AR N GWR+DY LVSE LA I+ I +V GS HCPV + L L
Sbjct: 236 YRFK-ARQTNAGWRIDYFLVSEALAPKIESACIYDEVYGSDHCPVGIELDL 285
>gi|384247332|gb|EIE20819.1| hypothetical protein COCSUDRAFT_18358, partial [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 148/241 (61%), Gaps = 11/241 (4%)
Query: 93 EYILEENPDIMALQQIRCQEDEVPES---FRKSLSHYHMFWIGS--DKGQGGVGLLTKEK 147
+ I E+ DI+ LQ+ + ++ +V R L +H ++ S KG GV +L++ K
Sbjct: 3 QLINSEDADILCLQETKLKDSDVAACEKLLRPGLQDWHFYFNNSIAKKGYSGVAVLSRAK 62
Query: 148 PLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRM-IWDQHFYDYIQ 205
PL+V G+ +Q GRVITA++ F + VYVPNSG LK +++R+ WD F DY+
Sbjct: 63 PLSVTNGLGKEDHDQEGRVITAEYPSFYVVNVYVPNSGEGLKRLEYRVGSWDVAFADYLA 122
Query: 206 SELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR-ELLDTGLVDAFRHL 264
L + +I++GDLN Q ID+ +P +N+K+AG+T EER++F +LL G D FR
Sbjct: 123 G-LGAKKPVILTGDLNCAHQEIDIHDPKRNLKSAGFTEEERKSFSAQLLQRGFKDTFREK 181
Query: 265 YPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLR 324
YPD G YTYW++R AR+ N+GWRLDY LVSE LA + D DVQGS HCPV L
Sbjct: 182 YPDVVG-YTYWNYRT-GARVRNRGWRLDYFLVSEALAERVHDIFHLPDVQGSDHCPVGLV 239
Query: 325 L 325
L
Sbjct: 240 L 240
>gi|239631265|ref|ZP_04674296.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239525730|gb|EEQ64731.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 252
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 147/255 (57%), Gaps = 12/255 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KK + E + D LQ+ + Q +V L YH ++
Sbjct: 1 MKLISWNVNGLRAVLKKEFMTIFN-ELDADWFCLQETKMQAGQV----ELDLPGYHQYFN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGV--SNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL V YG+ GV + GR+IT ++ F +TVY PNSG +LK
Sbjct: 56 YAERKGYSGTAIFTKHEPLNVTYGM-GVPEHDTEGRIITLEYPNFYLMTVYTPNSGGELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R WD+ F Y ++L + ++ GDLNV Q IDL N N A +T EER +
Sbjct: 115 RLDYRQQWDKDFLAYT-NQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNASFTDEERAD 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F + LD+G +D FR+LYPD Y++WS+R AR NN GWR+DY + S I+D
Sbjct: 174 FTKQLDSGFIDTFRNLYPDTV-TYSWWSYR-FHARANNAGWRIDYFVSSRDFKPYIQDAK 231
Query: 309 IRSDVQGSTHCPVVL 323
I +D+ GS HCPV L
Sbjct: 232 ILTDIMGSDHCPVEL 246
>gi|390468816|ref|XP_003734006.1| PREDICTED: uncharacterized protein LOC100400557 [Callithrix
jacchus]
Length = 289
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 151/267 (56%), Gaps = 36/267 (13%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVP 181
H +W SDK G GVGLL+++ PL V YGI
Sbjct: 113 GLPHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI-------------------------- 146
Query: 182 NSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGY 241
G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+
Sbjct: 147 --GRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGF 203
Query: 242 TVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQL 300
T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S L
Sbjct: 204 TPQERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSL 262
Query: 301 ANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ D IRS GS HCP+ L L+L
Sbjct: 263 LPALCDSKIRSKALGSDHCPITLYLAL 289
>gi|303232423|ref|ZP_07319115.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302481507|gb|EFL44575.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 259
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 151/258 (58%), Gaps = 9/258 (3%)
Query: 73 KVSTWNVNGLRACVKKNA-CVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++++WNVNGLRA +KK+ ++ + N DI+ +Q+ + QE ++ L Y W
Sbjct: 8 RLASWNVNGLRAVMKKDPNFIDVVQSLNVDIIGIQETKLQEGQIA----LDLPGYTQTWS 63
Query: 132 GSD-KGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
++ KG G + +KE PL + I ++ GRV +F F F+ VY PNS +L
Sbjct: 64 YAERKGYSGTAVFSKEAPLQTIHTIGCSAADNEGRVCALEFNDFWFVNVYTPNSKNELAR 123
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D RM WD+ + ++ + L + +I GD N + IDL NP N + AG++ EER +F
Sbjct: 124 LDERMEWDEAYRSFLHT-LDAKKPVITCGDFNCAHEEIDLKNPATNHQNAGFSDEERASF 182
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL+TG D FR +P AY++WS+R +S R N GWR+DY LVS+++ N + D I
Sbjct: 183 TKLLNTGFTDTFRAAHPTLTDAYSWWSYRMRS-RERNAGWRIDYFLVSDRIKNQVSDARI 241
Query: 310 RSDVQGSTHCPVVLRLSL 327
+DV GS HCPV L ++L
Sbjct: 242 HADVYGSDHCPVGLTITL 259
>gi|393199117|ref|YP_006460959.1| exonuclease III [Solibacillus silvestris StLB046]
gi|327438448|dbj|BAK14813.1| exonuclease III [Solibacillus silvestris StLB046]
Length = 252
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 147/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNG+RACV K ++Y E + D LQ+ +CQ ++ L Y+ +W
Sbjct: 1 MKFISWNVNGIRACVNK-GFLDYFREMDADFFCLQETKCQVGQID----LQLEGYYQYWH 55
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPG-VSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG G + TK +PL V YGI ++ GR++T +++ F + Y PN+ L
Sbjct: 56 SAVKKGYSGTAVFTKHEPLAVYYGIENEIAADEGRILTLEYENFYLVNTYTPNAKRDLTR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
++ R++W+ Y++ EL + +I GDLNV +D+ N N+ +G+T EER
Sbjct: 116 LEERLLWEDRMRIYLK-ELDAKKPVIYCGDLNVAHSELDIKNVKSNIGNSGFTYEERGKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL +G D FRH +PD +T+WS+ K R N GWR+DY ++S++L +++ I
Sbjct: 175 TDLLTSGFTDTFRHFHPDVTDHFTWWSYMAK-VRERNIGWRIDYFIISDRLVEKVEEASI 233
Query: 310 RSDVQGSTHCPVVLRL 325
S++ GS HCP+VL+L
Sbjct: 234 HSEILGSDHCPIVLKL 249
>gi|313147282|ref|ZP_07809475.1| exodeoxyribonuclease [Bacteroides fragilis 3_1_12]
gi|423277611|ref|ZP_17256525.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 610]
gi|424663743|ref|ZP_18100780.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 616]
gi|313136049|gb|EFR53409.1| exodeoxyribonuclease [Bacteroides fragilis 3_1_12]
gi|404577433|gb|EKA82171.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 616]
gi|404586808|gb|EKA91367.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 610]
Length = 253
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 152/257 (59%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ EENPD++ LQ+ + Q D+ P ++L + +
Sbjct: 1 MKIITYNVNGLRAAVNK-GLPEWLAEENPDVLCLQETKLQPDQYPAEAFEALGYKAYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK +P ++YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAILTKIEPDHIEYGM-GIEEYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ +S N+I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 119 QAFKMVWLEAFQKYVTELRKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G +D+FR LYP+++ YT+WS+R S R NKGWR+DY +VSE + + +K+ +I
Sbjct: 179 TRFLSAGFIDSFRTLYPEKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVSEPVRSLLKEAVI 236
Query: 310 RSDVQGSTHCPVVLRLS 326
++ S HCP+ L +
Sbjct: 237 LNNAVHSDHCPMALEVG 253
>gi|296126298|ref|YP_003633550.1| exodeoxyribonuclease III [Brachyspira murdochii DSM 12563]
gi|296018114|gb|ADG71351.1| exodeoxyribonuclease III Xth [Brachyspira murdochii DSM 12563]
Length = 257
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 156/261 (59%), Gaps = 17/261 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA KK V++I +ENPDI+ LQ+ + E+++PE R ++ Y +F
Sbjct: 1 MKIISWNVNGIRAAYKK-GLVDFIKKENPDIICLQETKAFEEQLPEDLR-NIEGYELFIN 58
Query: 132 GSD----KGQGGVGLLTKEKPLTVKYGIPG--VSNQRGRVITAKFKRFTFITVYVPNSGI 185
+D KG GV + TK KP V G S+ GR+++ +F FT VY PN G
Sbjct: 59 PADPEVKKGYSGVAIYTKLKPNKVIKNKLGSKFSDNEGRILSLEFDDFTIFNVYFPNGGK 118
Query: 186 KLKAIDFRMIWDQHFYDYIQ---SELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYT 242
+ ++++ FYD I ++L+S +N+I+ GD+N+ ++IDLA P +N K+ G+
Sbjct: 119 SEEHFNYKL----SFYDAITKHLTKLKSKTNVILCGDMNIAHEAIDLARPKENEKSIGFL 174
Query: 243 VEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLAN 302
EER E L+ G D FR ++ E G Y++W + +S R N GWR+DY V+ ++A
Sbjct: 175 PEEREKITEFLNKGFTDTFR-MFVKEGGHYSWWDMKTRS-REKNVGWRIDYFFVNNEIAQ 232
Query: 303 NIKDCIIRSDVQGSTHCPVVL 323
NIK I +DV GS HCP+++
Sbjct: 233 NIKRADIMTDVMGSDHCPILI 253
>gi|402828442|ref|ZP_10877330.1| exodeoxyribonuclease III [Slackia sp. CM382]
gi|402286525|gb|EJU34996.1| exodeoxyribonuclease III [Slackia sp. CM382]
Length = 264
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 105/271 (38%), Positives = 151/271 (55%), Gaps = 22/271 (8%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+++ +WNVNGLRA VKK E + D+ ALQ+ + QE ++ L Y W
Sbjct: 1 MRLISWNVNGLRAVVKK-GFDEAFAALDADVFALQETKLQEGQI----ELDLPGYVQNWS 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKY--GIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + ++E+PL V + G P + + GR+ +F++F F+ VY PN+ +L
Sbjct: 56 YAEKKGYSGTAVFSREEPLQVVHHVGTPALDTE-GRICACEFEKFWFVDVYTPNAQPELA 114
Query: 189 AIDFRMIWDQHFYDY--------IQSELRSNSN----IIISGDLNVCLQSIDLANPDKNV 236
++ RM WD F ++ + L S +I+ GD NV Q IDL NP N
Sbjct: 115 RLEHRMAWDAAFREFCKNLEAGVVPEGLGYASAEPKPVIMCGDFNVAHQEIDLKNPRSNR 174
Query: 237 KTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLV 296
+ G++ EER +F LLD G D FR L+PD EGAY++WS+R +AR NN GWR+DY LV
Sbjct: 175 GSPGFSDEERSSFTSLLDAGFADTFRMLHPDLEGAYSWWSYR-FNARKNNAGWRIDYFLV 233
Query: 297 SEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
S+ L I+ I +V GS HCPV L ++L
Sbjct: 234 SDALRGAIESASIYDEVMGSDHCPVGLDIAL 264
>gi|375358853|ref|YP_005111625.1| exodeoxyribonuclease [Bacteroides fragilis 638R]
gi|301163534|emb|CBW23085.1| exodeoxyribonuclease [Bacteroides fragilis 638R]
Length = 253
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 152/257 (59%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ EENPD++ LQ+ + Q ++ P ++L + +
Sbjct: 1 MKIITYNVNGLRAAVNK-GLPEWLAEENPDVLCLQETKLQPEQYPAEAFEALGYKAYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK +P ++YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAILTKVEPDHIEYGM-GIEEYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ +S N+I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 119 QAFKMVWLEAFQKYVTELRKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G +D+FR LYP ++ YT+WS+R S R NKGWR+DY +VSE + + +K+ +I
Sbjct: 179 TRFLSAGFIDSFRTLYPQKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVSEPVRSLLKEAVI 236
Query: 310 RSDVQGSTHCPVVLRLS 326
++ S HCP+ L +S
Sbjct: 237 LNNAVHSDHCPMALEIS 253
>gi|145511051|ref|XP_001441453.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408703|emb|CAK74056.1| unnamed protein product [Paramecium tetraurelia]
Length = 374
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/272 (38%), Positives = 165/272 (60%), Gaps = 19/272 (6%)
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIR-CQEDEVPESFRKSLSHYHMF 129
K+K+S+WN+NGLRA KK + V Y+ ++N DI+ L +++ QE E+ L +
Sbjct: 104 KLKISSWNINGLRASSKKESAVSYLNDKNFDIICLNELKVAQEAFEKENLITKLPKDYFA 163
Query: 130 WIGSDK---GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSG 184
++ K G GV +L+K KP+++KY + G+ +Q GR+ITA+F++F + YVPNSG
Sbjct: 164 YLNFCKIKAGYSGVAILSKVKPISIKYDM-GIEKHDQEGRIITAEFEKFNLVACYVPNSG 222
Query: 185 IKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG--- 240
KL +++R WD F +Y+ +L+ N II GDLNV IDLANP+ N ++AG
Sbjct: 223 DKLDRLNYRTQEWDVDFQNYL-DKLKQTKNTIICGDLNVSHTEIDLANPEGNKRSAGQLI 281
Query: 241 -----YTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHL 295
+T EER +F + L G +D FRHL+P +E Y+Y+S R S R NKGWR+DY +
Sbjct: 282 IYDQRFTQEERDSFSKFLSKGWIDTFRHLHP-KEIKYSYFSPRFNS-RETNKGWRIDYFV 339
Query: 296 VSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
V+++ ++ I++ + GS H P+ + L
Sbjct: 340 VNQEAVGSVIQSDIKTTILGSDHVPIECDIDL 371
>gi|148643539|ref|YP_001274052.1| exodeoxyribonuclease, XthA [Methanobrevibacter smithii ATCC 35061]
gi|222444963|ref|ZP_03607478.1| hypothetical protein METSMIALI_00579 [Methanobrevibacter smithii
DSM 2375]
gi|261350463|ref|ZP_05975880.1| exodeoxyribonuclease III [Methanobrevibacter smithii DSM 2374]
gi|148552556|gb|ABQ87684.1| exodeoxyribonuclease, XthA [Methanobrevibacter smithii ATCC 35061]
gi|222434528|gb|EEE41693.1| exodeoxyribonuclease III [Methanobrevibacter smithii DSM 2375]
gi|288861246|gb|EFC93544.1| exodeoxyribonuclease III [Methanobrevibacter smithii DSM 2374]
Length = 257
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 143/258 (55%), Gaps = 5/258 (1%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
VK+ +WNVNG+RA KK ++ N DI+ Q++R ED +PE F
Sbjct: 3 VKLVSWNVNGIRAASKKPEFWDWFNSTNADIINFQEVRATEDSIPEKLTDVAGFNSYFNE 62
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GVG +K KP V G+ GV ++ GRV+ ++ FT +Y PNSG+ K
Sbjct: 63 AEKKGYSGVGTFSKIKPENVVRGL-GVEALDREGRVLRLEYSDFTLFNIYFPNSGMNAKR 121
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+++ + D ++ N+II+GD+N+ ID+ NP +GY +EER
Sbjct: 122 LDYKIDFCNALLDLLEDLKNQGQNLIITGDVNIAHNPIDVYNPANCEGKSGYLIEEREWL 181
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+LL +G VD FR ++ D +T+WS+R + AR N GWRLDY V+E+ N +K I
Sbjct: 182 DDLLASGFVDTFR-MFDDSGDNFTWWSYRTR-ARDRNAGWRLDYFFVNEEFKNKVKSATI 239
Query: 310 RSDVQGSTHCPVVLRLSL 327
++DV GS HCPV L L L
Sbjct: 240 KNDVFGSDHCPVTLELDL 257
>gi|187779869|ref|ZP_02996342.1| hypothetical protein CLOSPO_03465 [Clostridium sporogenes ATCC
15579]
gi|187773494|gb|EDU37296.1| exodeoxyribonuclease III [Clostridium sporogenes ATCC 15579]
Length = 253
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 154/256 (60%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNGLRA KKN +E+I EENPDI+ +Q+ + QE+++ ++ + +Y F
Sbjct: 1 MRIYSWNVNGLRAVAKKN-FLEWIGEENPDILCIQETKLQENQLEDNIKNIDGYYSYFSF 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TKE+P++VK+GI G+ + GR++ +FK F + +Y PN +
Sbjct: 60 AHKKGYSGVATYTKEEPISVKHGI-GIERFDSEGRILITEFKDFILLNIYFPNGQRDEER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +++ + + ++Y + ++I GD N IDL NP N K +G+ ER
Sbjct: 119 LQYKLDFYEALFNYCDELVEEGKKLVICGDYNTAHNEIDLKNPKANEKASGFLRIERDWL 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
++++ G +D FR++ PD + Y++WS+R K AR N GWR+DYH VS L + +++ I
Sbjct: 179 DKIIERGYIDTFRNMNPD-KIKYSWWSYRFK-ARERNAGWRIDYHFVSNNLLDRVENTEI 236
Query: 310 RSDVQGSTHCPVVLRL 325
++V GS HCPV+L L
Sbjct: 237 LNEVYGSDHCPVMLEL 252
>gi|237794818|ref|YP_002862370.1| exodeoxyribonuclease III [Clostridium botulinum Ba4 str. 657]
gi|229261060|gb|ACQ52093.1| exodeoxyribonuclease III [Clostridium botulinum Ba4 str. 657]
Length = 253
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 155/256 (60%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNGLRA KKN +E+I EE+PDI+ +Q+ + QE+++ + + S+Y F
Sbjct: 1 MRIYSWNVNGLRAVAKKN-FIEWIGEESPDILCIQETKLQENQLEHNIKNIDSYYSYFSF 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG GV TK KP++VK+ I G+ + GR++ +FK FT + +Y PN +
Sbjct: 60 AAKKGYSGVATYTKVKPISVKHSI-GIEKFDSEGRILITEFKDFTLLNIYFPNGQRDEER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +++ + + ++Y ++ ++I GD N IDL NP N KT+G+ ER
Sbjct: 119 LQYKLDFYEALFNYCDELVKEGKKLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
++++ G D FR++ PD + Y++WS+R K AR N GWR+DYH VS L + +++ I
Sbjct: 179 DKIIERGYTDTFRNMNPD-KIKYSWWSYRFK-ARERNAGWRIDYHFVSNNLLDRVENTEI 236
Query: 310 RSDVQGSTHCPVVLRL 325
++V GS HCP++L L
Sbjct: 237 LNEVYGSDHCPIMLEL 252
>gi|298375698|ref|ZP_06985655.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_19]
gi|298268198|gb|EFI09854.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_19]
Length = 284
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 148/257 (57%), Gaps = 6/257 (2%)
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
K+K+ T+N NGLRA V K E++ +E PD++ +Q+ + Q D+ P ++L + +
Sbjct: 31 KLKIITYNTNGLRAAVGK-GLPEWLAQEQPDVLCIQETKLQPDQFPSETFETLGYKSYLF 89
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG GV +LTK++P ++YG+ G+ + GR + A F + ++VY P+ +
Sbjct: 90 SAQKKGYSGVAILTKQEPDHIEYGM-GIEKYDNEGRFLRADFGDVSIVSVYHPSGTSGDE 148
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
DF+MIW + F Y+ +S N+I+ GD N+C + ID+ +P +N K +G+ EER
Sbjct: 149 RQDFKMIWLEDFQKYVVELQKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEEREW 208
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
L G D FR L PD++ YT+WS+R S R NKGWR+DY +VS+ + +K
Sbjct: 209 MTRFLSAGFTDTFRFLNPDKQ-EYTWWSYRFNS-RFKNKGWRIDYCMVSDNMKPKVKAAY 266
Query: 309 IRSDVQGSTHCPVVLRL 325
I +D S HCP VL +
Sbjct: 267 ILNDAVHSDHCPAVLEI 283
>gi|225620509|ref|YP_002721766.1| exodeoxyribonuclease [Brachyspira hyodysenteriae WA1]
gi|225215328|gb|ACN84062.1| exodeoxyribonuclease [Brachyspira hyodysenteriae WA1]
Length = 261
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 157/262 (59%), Gaps = 19/262 (7%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA KK V++I +ENPDI+ LQ+ + E+++PE R ++ Y +F
Sbjct: 4 LKIISWNVNGIRAAYKK-GLVDFIKKENPDIICLQETKAFEEQLPEDLR-NIEGYELFIN 61
Query: 132 GSD----KGQGGVGLLTKEKP---LTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSG 184
+D KG GV + TK KP + K G S++ GR+++ +F FT VY PN G
Sbjct: 62 PADPEVKKGYSGVAIYTKLKPNKEIKNKLG-SKFSDREGRILSLEFDDFTIFNVYFPNGG 120
Query: 185 IKLKAIDFRMIWDQHFYDYIQ---SELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGY 241
+ +++ FYD I S+L+ N+N+I+ GD+N+ ++IDLA P +N K+ G+
Sbjct: 121 KSEEHFQYKL----SFYDEITKHLSKLKKNTNVILCGDMNIAHEAIDLARPKENEKSIGF 176
Query: 242 TVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLA 301
EER E L+ G D FR ++ E G Y++W + +S R N GWR+DY V+ ++A
Sbjct: 177 LPEEREKITEFLNKGFTDTFR-MFVKEGGHYSWWDMKTRS-REKNVGWRIDYFFVNNEMA 234
Query: 302 NNIKDCIIRSDVQGSTHCPVVL 323
NIK I +DV GS HCP+++
Sbjct: 235 PNIKRADILTDVMGSDHCPILI 256
>gi|298385343|ref|ZP_06994901.1| exodeoxyribonuclease III [Bacteroides sp. 1_1_14]
gi|298261484|gb|EFI04350.1| exodeoxyribonuclease III [Bacteroides sp. 1_1_14]
Length = 254
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 150/256 (58%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++++ENPDI+ LQ+ + Q D+ P ++L + +
Sbjct: 2 MKIITYNVNGLRAAVSK-GLPEWLVQENPDILCLQETKLQPDQYPAEVFEALGYKAYLYS 60
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK++P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 61 AQKKGYSGVAILTKQEPDHVEYGM-GIEAYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 119
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ ++ N+I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 120 QAFKMVWLEDFQKYVTELRKTRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWM 179
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G +D+FR LYP+++ YT+WS+R S R NKGWR+DY + SE + +K I
Sbjct: 180 TRFLSAGFIDSFRLLYPEKQ-EYTWWSYRFNS-RAKNKGWRIDYCMTSEPVRPMLKSASI 237
Query: 310 RSDVQGSTHCPVVLRL 325
+D S HCP+ L +
Sbjct: 238 LNDAVHSDHCPMALEI 253
>gi|423300230|ref|ZP_17278255.1| exodeoxyribonuclease III (xth) [Bacteroides finegoldii CL09T03C10]
gi|408474039|gb|EKJ92561.1| exodeoxyribonuclease III (xth) [Bacteroides finegoldii CL09T03C10]
Length = 255
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 151/256 (58%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +ENPDI+ LQ+ + Q D+ P ++L + +
Sbjct: 2 MKIITYNVNGLRAAVSK-GFPEWLAQENPDILCLQETKLQPDQYPAEVFEALGYKSYLYS 60
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK++P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 61 AQKKGYSGVAILTKQEPDHVEYGM-GIEAYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 119
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ ++ N+I+ GD N+C + ID+ +P +N K +G+ EER
Sbjct: 120 QAFKMVWLEDFQKYVTELRKTRPNLILCGDYNICHEPIDIHDPVRNAKNSGFLPEEREWM 179
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G +D+FR LYP+++ YT+WS+R S R NKGWR+DY + SE + +K I
Sbjct: 180 TRFLSAGFIDSFRLLYPEKQ-EYTWWSYRFNS-RAKNKGWRIDYCMASEPVRRWLKSARI 237
Query: 310 RSDVQGSTHCPVVLRL 325
++ S HCP+VL +
Sbjct: 238 LNEAVHSDHCPMVLEI 253
>gi|452823263|gb|EME30275.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 331
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 161/265 (60%), Gaps = 10/265 (3%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQE-DEVPESFRKSLS-HY 126
T+K+ + TWNV G+R+ VK + ++ + PD++ LQ+ + + +V E +SLS Y
Sbjct: 67 TSKIFI-TWNVAGMRSTVKNPLFLGFLSKLGPDVICLQETKLSDKGQVSEEVTQSLSDQY 125
Query: 127 HMFW--IGSDKGQGGVGLLTKEKPLTVKYGI-PGVSNQRGRVITAKFKRFTFITVYVPNS 183
H W + KG G + T+E+PL+V YG+ N+ GRVIT +++++ + YVPN+
Sbjct: 126 HDIWNHCTARKGYSGTAIFTREEPLSVLYGLQEEKHNEEGRVITLEYEKYFLVNAYVPNA 185
Query: 184 GIKLKAIDFRM-IWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYT 242
G L+ +++R+ W++ Y+ L +I +GDLNV Q ID+ P + K AG+T
Sbjct: 186 GEGLRRLNYRIDSWEKDMCQYL-CGLNQKKPVIYTGDLNVAHQEIDIYQPKGHEKHAGFT 244
Query: 243 VEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLAN 302
+ER+ F +LL G VDAFR+LYP + ++TYWS R K A+ N GWRLDY + SE+L
Sbjct: 245 PQERQKFTDLLQCGFVDAFRYLYPHRQ-SFTYWSKRAK-AKERNHGWRLDYFVTSERLVP 302
Query: 303 NIKDCIIRSDVQGSTHCPVVLRLSL 327
I +C + ++ S HCP++L L +
Sbjct: 303 CILECEMFENIYISDHCPLMLHLDI 327
>gi|237750354|ref|ZP_04580834.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
gi|229373884|gb|EEO24275.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
Length = 255
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 101/256 (39%), Positives = 152/256 (59%), Gaps = 17/256 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQI---RCQEDEVPESFRKSLSHYHM 128
+K+ +WNVNGLRAC+ K +++ + D+ +Q+ R Q D V Y+
Sbjct: 1 MKMISWNVNGLRACMTK-GFMDFFNTIDADVFCIQESKMHRSQSDFV-------FDGYYQ 52
Query: 129 FWIGSDK-GQGGVGLLTKEKPLTV--KYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGI 185
FW ++K G G +L+K +PL+V GI ++ GR+I A++ F + VY PNS
Sbjct: 53 FWNEAEKKGYSGTIILSKTEPLSVCNDMGIAH-HDKEGRIIVAEYATFFLVNVYTPNSKR 111
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
+L+ + +R W+ F +++ L +I+ GDLNV + IDL NP N + AG+T EE
Sbjct: 112 ELERLTYRQEWEDDFRSFLKG-LEQYKPVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEE 170
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R LLD+G +D++R+ YPD+E AYT+WS+ K AR NN GWR+DY L+S LA N+K
Sbjct: 171 REKMSVLLDSGFIDSYRYFYPDKEHAYTWWSYMGK-ARQNNTGWRIDYFLLSRCLAKNLK 229
Query: 306 DCIIRSDVQGSTHCPV 321
+ I ++ GS HCPV
Sbjct: 230 EAHIYPEIMGSDHCPV 245
>gi|312144054|ref|YP_003995500.1| exodeoxyribonuclease III Xth [Halanaerobium hydrogeniformans]
gi|311904705|gb|ADQ15146.1| exodeoxyribonuclease III Xth [Halanaerobium hydrogeniformans]
Length = 254
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 150/258 (58%), Gaps = 6/258 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNG+RA V + +++I EE PD++ALQ+IR Q +++ + + ++ F
Sbjct: 1 MRIYSWNVNGIRA-VNRKGFLDWIEEEKPDVLALQEIRIQPEQLKDKLKNIDGYHSYFNY 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
G G GV + +KE+PL V G G+ + GRVI A++ F + +Y PN +
Sbjct: 60 GEKAGYSGVAIYSKEEPLDVWKGF-GIERFDYEGRVIAAEYPEFYLLNIYFPNGKSSKER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++++ + +Y + +++SGD N +DL NPD N T+G+ ER
Sbjct: 119 LNYKLDFYDATLEYAEELREEGKGVVVSGDYNTAHHPLDLKNPDANKNTSGFLEIEREWL 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L + G +D +R+ YPD+E Y++WS+R + AR N GWR+DYH +SE+L +N+ I
Sbjct: 179 DKLENHGFIDTYRYFYPDKE-TYSWWSYRTR-ARERNAGWRIDYHFISEELEDNLNHSDI 236
Query: 310 RSDVQGSTHCPVVLRLSL 327
+DV GS HCPV + L
Sbjct: 237 LTDVMGSDHCPVTVDLKF 254
>gi|269216697|ref|ZP_06160551.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
gi|269129931|gb|EEZ61014.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
Length = 264
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 105/271 (38%), Positives = 150/271 (55%), Gaps = 22/271 (8%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+++ +WNVNGLRA VKK E + D+ ALQ+ + QE ++ L Y W
Sbjct: 1 MRLISWNVNGLRAVVKK-GFNEAFAALDADVFALQETKLQEGQI----ELDLPGYVQNWS 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKY--GIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + ++E+PL V + G P + + GR+ +F++F F+ VY PN+ +L
Sbjct: 56 YAEKKGYSGTAVFSREEPLQVVHHVGTPALDTE-GRICACEFEKFWFVDVYTPNAQPELA 114
Query: 189 AIDFRMIWDQHFYDY--------IQSELRSNSN----IIISGDLNVCLQSIDLANPDKNV 236
++ RM WD F ++ + L S +I+ GD NV Q IDL NP N
Sbjct: 115 RLEHRMAWDAAFREFCKNLEAGVVPEGLGYASAEPKPVIMCGDFNVAHQEIDLKNPRSNR 174
Query: 237 KTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLV 296
G++ EER +F LLD G D FR L+PD EGAY++WS+R +AR NN GWR+DY LV
Sbjct: 175 GNPGFSDEERSSFTSLLDAGFADTFRMLHPDLEGAYSWWSYR-FNARKNNAGWRIDYFLV 233
Query: 297 SEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
S+ L I+ I +V GS HCPV L ++L
Sbjct: 234 SDALRGAIESASIYDEVMGSDHCPVGLDIAL 264
>gi|429123117|ref|ZP_19183650.1| exodeoxyribonuclease [Brachyspira hampsonii 30446]
gi|426280930|gb|EKV57933.1| exodeoxyribonuclease [Brachyspira hampsonii 30446]
Length = 261
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 157/262 (59%), Gaps = 19/262 (7%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA KK V++I +ENPDI+ LQ+ + E+++PE R ++ Y +F
Sbjct: 4 LKIISWNVNGIRAAYKK-GLVDFIKKENPDIICLQETKAFEEQLPEDLR-NIEGYELFIN 61
Query: 132 GSD----KGQGGVGLLTKEKP---LTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSG 184
+D KG GV + TK KP + K G S++ GR+++ +F FT VY PN G
Sbjct: 62 PADPEIKKGYSGVAIYTKLKPNKEIKNKLG-SKFSDREGRILSLEFDDFTIFNVYFPNGG 120
Query: 185 IKLKAIDFRMIWDQHFYDYIQ---SELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGY 241
+ +++ FYD I S+L+ N+N+I+ GD+N+ ++IDLA P +N K+ G+
Sbjct: 121 KSEEHFQYKL----SFYDEITKHLSKLKKNTNVILCGDMNIAHEAIDLARPKENEKSIGF 176
Query: 242 TVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLA 301
EER E L+ G D FR ++ E G Y++W + +S R N GWR+DY V+ ++A
Sbjct: 177 LPEEREKITEFLNKGFTDTFR-MFVKEGGHYSWWDMKTRS-REKNVGWRIDYFFVNNEIA 234
Query: 302 NNIKDCIIRSDVQGSTHCPVVL 323
NIK I +DV GS HCP+++
Sbjct: 235 PNIKRADILTDVMGSDHCPILI 256
>gi|260642288|ref|ZP_05415267.2| exodeoxyribonuclease III [Bacteroides finegoldii DSM 17565]
gi|260622802|gb|EEX45673.1| exodeoxyribonuclease III [Bacteroides finegoldii DSM 17565]
Length = 255
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 151/256 (58%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +ENPDI+ LQ+ + Q D+ P ++L + +
Sbjct: 2 MKIITYNVNGLRAAVSK-GFPEWLAQENPDILCLQETKLQPDQYPAEVFEALGYKSYLYS 60
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK++P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 61 AQKKGYSGVAILTKQEPDHVEYGM-GIEAYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 119
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ ++ N+I+ GD N+C + ID+ +P +N K +G+ EER
Sbjct: 120 QAFKMVWLEDFQKYVTELRKTRPNLILCGDYNICHEPIDIHDPVRNAKNSGFLPEEREWM 179
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G +D+FR LYP+++ YT+WS+R S R NKGWR+DY + SE + +K I
Sbjct: 180 TRFLSAGFIDSFRLLYPEKQ-EYTWWSYRFNS-RAKNKGWRIDYCMTSEPVRRWLKSARI 237
Query: 310 RSDVQGSTHCPVVLRL 325
++ S HCP+VL +
Sbjct: 238 LNEAVHSDHCPMVLEI 253
>gi|339624630|ref|ZP_08660419.1| exodeoxyribonuclease III [Fructobacillus fructosus KCTC 3544]
Length = 272
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 155/273 (56%), Gaps = 18/273 (6%)
Query: 72 VKVSTWNVNGLRACVKKNA--------CVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
+K+ +WN++ + A V+ + +E I E PD++A+Q+ + + D + + + +L
Sbjct: 1 MKLISWNIDSINAAVEHKSDRGLMTWGVLEKIAEAKPDVVAIQETKLKVDGLTKKQKAAL 60
Query: 124 S----HYHMFWIGSD--KGQGGVGLLTKEKPLTVKY---GIPGVSNQRGRVITAKFKRFT 174
YH + S K G L+TKE+PL V Y G PG +Q GR++TA+F
Sbjct: 61 EALFPDYHFYTNSSSARKSYAGTMLMTKEEPLNVDYPAIGAPGEMDQEGRIVTAEFNDCF 120
Query: 175 FITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDK 234
TVY PN+G +L +D R +WD + YI L +I SGD NV + IDL +P
Sbjct: 121 VSTVYTPNAGGELARLDDRQLWDDAYRQYING-LNEQKPVIFSGDFNVAHEEIDLKHPSA 179
Query: 235 NVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYH 294
N +AG+T EER +F +LLD G D R ++P+E G Y++W+ R+K++++NN GWR+DY+
Sbjct: 180 NHHSAGFTDEERSHFTKLLDAGYTDTLRAMHPNEAGIYSWWAQRSKTSKINNSGWRIDYY 239
Query: 295 LVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
LVS ++A+ ++ + H P+ L + +
Sbjct: 240 LVSNRIADKVQKIQVVDTGARQDHAPLELDIEM 272
>gi|270010058|gb|EFA06506.1| hypothetical protein TcasGA2_TC009405 [Tribolium castaneum]
Length = 983
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 138/218 (63%), Gaps = 6/218 (2%)
Query: 74 VSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGS 133
++TWNV+GLR+ +KK C++ + + PDI+ +Q+ +C ++PE K++ Y W S
Sbjct: 770 ITTWNVDGLRSWLKK-GCLDILKYDKPDILCIQETKCAVYKLPEEV-KTIEGYETLWCCS 827
Query: 134 DK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAID 191
DK G GVG++ K+KPL V YGI + GR IT +++ F + VYVP++G L +
Sbjct: 828 DKDGYAGVGIMVKDKPLNVIYGIDSKEHDTEGRCITVEYETFFVVNVYVPHAGRNLVTLP 887
Query: 192 FRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRE 251
R+ W++ F +I++ L S +II GD+NV + IDLANP N +AG++VEER
Sbjct: 888 KRLDWNEQFEKFIKN-LDSQKPVIICGDMNVAHKEIDLANPKTNTNSAGFSVEERDGMTA 946
Query: 252 LLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGW 289
L G VD +RHLYP++E AYT+W + ++AR NN GW
Sbjct: 947 FLGNGYVDIYRHLYPEKEKAYTFWIYM-RNARPNNVGW 983
>gi|160889848|ref|ZP_02070851.1| hypothetical protein BACUNI_02279 [Bacteroides uniformis ATCC 8492]
gi|270294104|ref|ZP_06200306.1| exodeoxyribonuclease III [Bacteroides sp. D20]
gi|317478856|ref|ZP_07938007.1| exodeoxyribonuclease III [Bacteroides sp. 4_1_36]
gi|156860840|gb|EDO54271.1| exodeoxyribonuclease III [Bacteroides uniformis ATCC 8492]
gi|270275571|gb|EFA21431.1| exodeoxyribonuclease III [Bacteroides sp. D20]
gi|316905032|gb|EFV26835.1| exodeoxyribonuclease III [Bacteroides sp. 4_1_36]
Length = 254
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 154/257 (59%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +E PD++ LQ+ + Q ++ P +L + H +
Sbjct: 1 MKIITYNVNGLRAAVTK-GFPEWLAQEQPDVLCLQETKLQPEQYPAEALDALGYKHYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +L+K++P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAILSKQEPDHVEYGM-GIEEYDNEGRFIRADFGDVSVVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F +Y+ R+ +I+ GD N+C ++ID+ +P +N +G+ EER
Sbjct: 119 QAFKMVWLEKFQEYVLELERTRPKLILCGDYNICHEAIDIHDPIRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L+ G +D+FR L+PD++ YT+WS+R S R NKGWR+DY +VSE + +K+ I
Sbjct: 179 TRFLNAGFIDSFRWLHPDKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVSEPVRPMLKEARI 236
Query: 310 RSDVQGSTHCPVVLRLS 326
DV S HCP++L ++
Sbjct: 237 LGDVVHSDHCPMLLEIT 253
>gi|423218261|ref|ZP_17204757.1| exodeoxyribonuclease III (xth) [Bacteroides caccae CL03T12C61]
gi|392627764|gb|EIY21799.1| exodeoxyribonuclease III (xth) [Bacteroides caccae CL03T12C61]
Length = 257
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 150/256 (58%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +ENPDI+ LQ+ + Q D+ P ++L + +
Sbjct: 2 MKIITYNVNGLRAAVSK-GLPEWLEQENPDILCLQETKLQPDQYPGEVFEALGYKSYLYS 60
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV LLTK++P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 61 AQKKGYSGVALLTKQEPDHVEYGM-GMEAYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 119
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ +S N+I+ GD N+C + ID+ +P +N K +G+ EER
Sbjct: 120 QAFKMVWLEDFQKYVLELQKSRPNLILCGDYNICHEPIDIHDPVRNAKNSGFLPEEREWM 179
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G +D+FR LYP+++ YT+WS+R S R NKGWR+DY + SE + + I
Sbjct: 180 TRFLAAGFIDSFRMLYPEKQ-EYTWWSYRFNS-RAKNKGWRIDYCMASEPVRPLLMSARI 237
Query: 310 RSDVQGSTHCPVVLRL 325
+D S HCP++L +
Sbjct: 238 LNDAMHSDHCPMMLEI 253
>gi|304384068|ref|ZP_07366522.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
gi|304334784|gb|EFM01060.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
Length = 250
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 147/259 (56%), Gaps = 12/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRACV K + E + D LQ+ + QE ++ F Y +W
Sbjct: 1 MKFVSWNVNGLRACVGK-SFEESFRMLDADFFCLQETKMQEGQLNLQFEG----YEAYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + T+ +P +V YG+ GV + GR+IT + F +TVY PNS LK
Sbjct: 56 YAEKKGYSGTAIYTRHQPQSVSYGM-GVEAHDHEGRIITLEMPGFYLVTVYTPNSQDGLK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ +RM W++ F YI+ +L + +II GD+NV + ID+ NP N AG+T EER
Sbjct: 115 RLAYRMQWEEDFLQYIK-KLDAKKPVIICGDMNVAHEEIDIKNPKTNRHNAGFTDEERNK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F LL G D FR+ YP E+ Y++WS+R + AR N GWR+DY +VS +L I D
Sbjct: 174 FTTLLSEGFTDTFRYKYP-EQVRYSWWSYRFQ-ARAKNAGWRIDYFVVSNRLKPQIIDAK 231
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I + + GS HCPV + L+L
Sbjct: 232 IHTAILGSDHCPVEVELNL 250
>gi|188994231|ref|YP_001928483.1| exodeoxyribonuclease III [Porphyromonas gingivalis ATCC 33277]
gi|188593911|dbj|BAG32886.1| exodeoxyribonuclease III [Porphyromonas gingivalis ATCC 33277]
Length = 254
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 154/257 (59%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ ++NVNGLRA +KK+ + ++ EENPD++ LQ+ + Q D+ + ++L + +
Sbjct: 1 MKIISYNVNGLRAAMKKD-LIGWLREENPDVLCLQETKMQNDQFEKEEFEALGYRSYLFS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV ++TK +P ++YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAIITKHQPDHIEYGM-GMEEYDAEGRFIRADFGDLSIVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W +HF Y+ +S N+I+ GD N+C + ID+ +P +N K +G+ EER
Sbjct: 119 QAFKMVWLEHFQSYVNELRKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G VD FRH +P E Y++WS+R + AR NKGWR+DY +V+ LA+ IK I
Sbjct: 179 SRFLADGYVDTFRHTHP-ELVLYSWWSYRFQ-ARSRNKGWRIDYCMVTNNLADRIKGAYI 236
Query: 310 RSDVQGSTHCPVVLRLS 326
++ S HCP+VL ++
Sbjct: 237 LNEAVHSDHCPIVLEIA 253
>gi|71989536|ref|NP_001021584.1| Protein EXO-3, isoform a [Caenorhabditis elegans]
gi|3879014|emb|CAB03235.1| Protein EXO-3, isoform a [Caenorhabditis elegans]
gi|3941298|gb|AAC82328.1| exonuclease III homolog [Caenorhabditis elegans]
Length = 288
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 157/261 (60%), Gaps = 13/261 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQE--DEVPESFRKSLSHYHMFW 130
K WNV GLRACVKK+ E +L E PD++ L + +C+E E+ E+F+ ++
Sbjct: 35 KFVCWNVAGLRACVKKSDFKE-VLAEEPDLVFLGETKCKEWPPEMEETFK---NYTKTLV 90
Query: 131 IGSDK--GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKL 187
+ ++K G GVGLL+K P+ V GI + GR+I A+F +F FI YVPNSG KL
Sbjct: 91 VSTEKNGGYAGVGLLSKCAPMKVHKGIGDPEFDTAGRLIIAEFSKFYFIGAYVPNSGAKL 150
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEER 246
++ R W++ + ++ E+ +I GDLNV IDL NP+ N KTAG+T +ER
Sbjct: 151 VNLEKRGRWEKLLTEKMK-EMDEKKPVIYGGDLNVAHNEIDLKNPESNRNKTAGFTDQER 209
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
F E+L+ G D FR ++PDE+ Y++WS+ S R + GWRLDY++VS ++ N +K
Sbjct: 210 GWFSEMLELGFTDTFRAMHPDEK-KYSFWSYLANS-RQKDVGWRLDYYVVSNRIMNKVKR 267
Query: 307 CIIRSDVQGSTHCPVVLRLSL 327
I S V GS H PVV+++
Sbjct: 268 SDIMSSVMGSDHAPVVMQIDF 288
>gi|404451597|ref|ZP_11016558.1| exodeoxyribonuclease III [Indibacter alkaliphilus LW1]
gi|403762724|gb|EJZ23764.1| exodeoxyribonuclease III [Indibacter alkaliphilus LW1]
Length = 254
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 156/257 (60%), Gaps = 8/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ ++NVNG+RA + K V+++ ENPDI+ LQ+++ E+++ ++ + L Y ++W
Sbjct: 1 MKIVSYNVNGIRAAINK-GFVDWLKAENPDIIGLQEVKALENQIDKTMFEDLG-YQVYWY 58
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG GV +LTK++P V+YG+ G+ + GR+I F+ F+FI+ Y P+
Sbjct: 59 PAVKKGYSGVAILTKKQPKHVEYGM-GIETYDDEGRMIRTDFEEFSFISSYFPSGTTGDI 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
DF+ ++ Y Y Q + N+I+SGD N+C ++ID+ NP N ++G+ EER
Sbjct: 118 RQDFKYMFLDDIYGYTQELTQKIPNLILSGDYNICHKAIDIHNPVSNKNSSGFLPEERAW 177
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+ ++G VD+FR P E YT+WS+R AR N GWR+DYH+V++ NNIK
Sbjct: 178 MDKFTESGFVDSFRKFNP-EPHQYTWWSYR-AGARAKNLGWRIDYHMVNKPFENNIKSSG 235
Query: 309 IRSDVQGSTHCPVVLRL 325
I +DV S HCP+ + +
Sbjct: 236 ILADVHHSDHCPIWIEI 252
>gi|73670688|ref|YP_306703.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina barkeri
str. Fusaro]
gi|72397850|gb|AAZ72123.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina barkeri
str. Fusaro]
Length = 258
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 146/254 (57%), Gaps = 6/254 (2%)
Query: 76 TWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK 135
+WNVNGLRA +KK +E +LE+ DI+ +Q+ + D++P + +Y+ F
Sbjct: 9 SWNVNGLRAVMKK-GFLELLLEQKFDIVCIQETKVSPDKLPREAKNIPGYYNYFVSAEKN 67
Query: 136 GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFR 193
G GVGL +K+KPL ++ G+ G+ ++ GR + A F+ FT + +Y PN L+ ++++
Sbjct: 68 GYSGVGLFSKKKPLKLETGM-GIEKFDKEGRFLRADFEDFTLMNIYFPNGKASLERLEYK 126
Query: 194 MIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELL 253
M + + F DY S ++I GD+N + +DLA P +N +G+ EER + L
Sbjct: 127 MSFYEAFLDYANSLKAEGKRLVICGDVNTAHKELDLARPKQNETISGFLPEERAWMDKFL 186
Query: 254 DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDV 313
G +D FR P E G Y++WS R AR N GWRLDY VSE+L +N+K I S++
Sbjct: 187 AAGYLDTFRMFNP-EGGNYSWWSMRT-GARKRNVGWRLDYFFVSEKLRDNVKSAPIYSEI 244
Query: 314 QGSTHCPVVLRLSL 327
GS HCPV L L
Sbjct: 245 MGSDHCPVGLELEF 258
>gi|153806611|ref|ZP_01959279.1| hypothetical protein BACCAC_00881 [Bacteroides caccae ATCC 43185]
gi|149131288|gb|EDM22494.1| exodeoxyribonuclease III [Bacteroides caccae ATCC 43185]
Length = 263
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 150/256 (58%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +ENPDI+ LQ+ + Q D+ P ++L + +
Sbjct: 2 MKIITYNVNGLRAAVSK-GLPEWLEQENPDILCLQETKLQPDQYPVEVFEALGYKSYLYS 60
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV LLTK++P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 61 AQKKGYSGVALLTKQEPDHVEYGM-GMEAYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 119
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ +S N+I+ GD N+C + ID+ +P +N K +G+ EER
Sbjct: 120 QAFKMVWLEDFQKYVLELQKSRPNLILCGDYNICHEPIDIHDPVRNAKNSGFLPEEREWM 179
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G +D+FR LYP+++ YT+WS+R S R NKGWR+DY + SE + + I
Sbjct: 180 TRFLAAGFIDSFRMLYPEKQ-EYTWWSYRFNS-RAKNKGWRIDYCMASEPVRPLLMSARI 237
Query: 310 RSDVQGSTHCPVVLRL 325
+D S HCP++L +
Sbjct: 238 LNDAMHSDHCPMMLEI 253
>gi|168182409|ref|ZP_02617073.1| exodeoxyribonuclease III [Clostridium botulinum Bf]
gi|182674470|gb|EDT86431.1| exodeoxyribonuclease III [Clostridium botulinum Bf]
Length = 253
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 155/256 (60%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNGLRA KKN +E+I EE+PDI+ +Q+ + QE+++ ++ + +Y F
Sbjct: 1 MRIYSWNVNGLRAVAKKN-FIEWIGEESPDILCIQETKLQENQLEDNIKNIDGYYSYFSF 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG GV TK KP++VK+ I G+ + GR++ +FK FT + +Y PN +
Sbjct: 60 AAKKGYSGVATYTKVKPISVKHSI-GIEKFDSEGRILITEFKDFTLLNIYFPNGQRDEER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +++ + + ++Y ++ ++I GD N IDL NP N KT+G+ ER
Sbjct: 119 LQYKLDFYEALFNYCDELVKEGKKLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
++++ G D FR++ PD + Y++WS+R K AR N GWR+DYH VS L + +++ I
Sbjct: 179 DKIIERGYTDTFRNMNPD-KIKYSWWSYRFK-ARERNAGWRIDYHFVSNNLLDRVENTEI 236
Query: 310 RSDVQGSTHCPVVLRL 325
++V GS HCP++L L
Sbjct: 237 LNEVYGSDHCPIMLEL 252
>gi|255013539|ref|ZP_05285665.1| exodeoxyribonuclease [Bacteroides sp. 2_1_7]
gi|410103604|ref|ZP_11298525.1| exodeoxyribonuclease III (xth) [Parabacteroides sp. D25]
gi|409236333|gb|EKN29140.1| exodeoxyribonuclease III (xth) [Parabacteroides sp. D25]
Length = 253
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 149/256 (58%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+N NGLRA V K E++ +E PD++ +Q+ + Q D+ P ++L + +
Sbjct: 1 MKIITYNTNGLRAAVGK-GLPEWLAQEQPDVLCIQETKLQPDQFPAETFEALGYKSYLFS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK++P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAILTKQEPDHVEYGM-GIERYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
DF+M+W + F Y+ +S N+I+ GD N+C + ID+ +P +N K +G+ EER
Sbjct: 119 QDFKMVWLEDFQKYVVELQKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G +D FR L P+++ YT+WS+R S R NKGWR+DY +VSE + + +K I
Sbjct: 179 TRFLSAGFIDTFRLLNPEKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVSEAMKSRVKAAYI 236
Query: 310 RSDVQGSTHCPVVLRL 325
+D S HCP VL +
Sbjct: 237 LNDAVHSDHCPAVLEV 252
>gi|170759835|ref|YP_001786903.1| exodeoxyribonuclease III [Clostridium botulinum A3 str. Loch Maree]
gi|169406824|gb|ACA55235.1| exodeoxyribonuclease III [Clostridium botulinum A3 str. Loch Maree]
Length = 253
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 155/256 (60%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNGLRA KKN +E+I EE+PDI+ +Q+ + QE+++ ++ + +Y F
Sbjct: 1 MRIYSWNVNGLRAVAKKN-FIEWIGEESPDILCIQETKLQENQLEDNIKNIDGYYSYFSF 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ KG GV TK KP++VK+ + G+ + GR++ +FK FT + +Y PN +
Sbjct: 60 AAKKGYSGVATYTKVKPISVKHSM-GIEKFDSEGRILITEFKNFTLLNIYFPNGQRDEER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +++ + + ++Y ++ ++I GD N IDL NP N KT+G+ ER
Sbjct: 119 LQYKLDFYEALFNYCDELVKEGKKLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
++++ G D FR++ PD + Y++WS+R K AR N GWR+DYH VS L + +++ I
Sbjct: 179 DKIIERGYTDTFRNMNPD-KIKYSWWSYRFK-ARERNAGWRIDYHFVSNNLLDRVENTEI 236
Query: 310 RSDVQGSTHCPVVLRL 325
++V GS HCPV+L L
Sbjct: 237 LNEVYGSDHCPVMLEL 252
>gi|342218104|ref|ZP_08710730.1| exodeoxyribonuclease III [Megasphaera sp. UPII 135-E]
gi|341590909|gb|EGS34130.1| exodeoxyribonuclease III [Megasphaera sp. UPII 135-E]
Length = 249
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 147/256 (57%), Gaps = 9/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRA +KK ++ + D LQ+ + Q ++ +L YH +W
Sbjct: 1 MKYISWNVNGLRAIMKK-GFIDIFQTLDADFFCLQETKLQAGQID----LTLPGYHQYWN 55
Query: 132 GSD-KGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+D KG G + TK +PL V YG+ + GR+IT ++ +T Y PNS +L
Sbjct: 56 YADRKGYSGTAIFTKHEPLQVTYGMGIDAHDHEGRLITLEYPDRYVVTCYTPNSQNELAR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +RM W+ Y+ S+L+ ++I GDLNV + IDL NP N K AG++ EER
Sbjct: 116 LPYRMQWEDDCRHYL-SQLKEQKSVIFCGDLNVAHEEIDLKNPKNNRKNAGFSDEEREKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LL++G D +R+ YPD Y++WS+R +AR NN GWR+DY + S+ L + +K+ I
Sbjct: 175 TNLLNSGFTDTWRYFYPDTANVYSWWSYR-FNARKNNAGWRIDYFITSDDLNSCLKEAHI 233
Query: 310 RSDVQGSTHCPVVLRL 325
+D+ GS HCPV L L
Sbjct: 234 YTDIMGSDHCPVGLIL 249
>gi|402308513|ref|ZP_10827517.1| exodeoxyribonuclease III [Prevotella sp. MSX73]
gi|400374964|gb|EJP27874.1| exodeoxyribonuclease III [Prevotella sp. MSX73]
Length = 242
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/250 (41%), Positives = 143/250 (57%), Gaps = 12/250 (4%)
Query: 79 VNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSDKGQ 137
+NGLRACV K E + D LQ+ + QE ++ F Y +W KG
Sbjct: 1 MNGLRACVGK-GFEESFKALDADFFCLQETKMQEGQLNLQFEG----YDSYWNYAEKKGY 55
Query: 138 GGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMI 195
G + TK KPL V YG+ G+ + GRVIT + + F ITVY PNS +L+ +D+RM
Sbjct: 56 SGTAIYTKHKPLNVTYGL-GIEEHDHEGRVITLEMEDFYLITVYTPNSQDELRRLDYRMT 114
Query: 196 WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT 255
W+ F YIQ L + +I+ GDLNV + IDL NP N + AG+T EER L++
Sbjct: 115 WEDDFLKYIQG-LDAKKPVIVCGDLNVAHEEIDLKNPKTNRRNAGFTDEEREKMTITLNS 173
Query: 256 GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQG 315
G D+FR+ YP E+ Y++WS+R AR N GWR+DY L+S +L + + D I ++V G
Sbjct: 174 GFTDSFRYKYP-EQVTYSWWSYRF-HAREKNAGWRIDYFLISNRLRDRLVDAKIHTEVYG 231
Query: 316 STHCPVVLRL 325
S HCPV L L
Sbjct: 232 SDHCPVELDL 241
>gi|150007753|ref|YP_001302496.1| exodeoxyribonuclease [Parabacteroides distasonis ATCC 8503]
gi|256840019|ref|ZP_05545528.1| exodeoxyribonuclease III [Parabacteroides sp. D13]
gi|423331753|ref|ZP_17309537.1| exodeoxyribonuclease III (xth) [Parabacteroides distasonis
CL03T12C09]
gi|149936177|gb|ABR42874.1| exodeoxyribonuclease [Parabacteroides distasonis ATCC 8503]
gi|256738949|gb|EEU52274.1| exodeoxyribonuclease III [Parabacteroides sp. D13]
gi|409229594|gb|EKN22466.1| exodeoxyribonuclease III (xth) [Parabacteroides distasonis
CL03T12C09]
Length = 284
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 148/257 (57%), Gaps = 6/257 (2%)
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
K+K+ T+N NGLRA V K E++ +E PD++ +Q+ + Q D+ P ++L + +
Sbjct: 31 KLKIITYNTNGLRAAVGK-GLPEWLAQEQPDVLCIQETKLQPDQFPSETFETLGYKSYLF 89
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG GV +LTK++P ++YG+ G+ + GR + A F + ++VY P+ +
Sbjct: 90 SAQKKGYSGVAILTKQEPDHIEYGM-GIEKYDNEGRFLRADFGDVSIVSVYHPSGTSGDE 148
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
DF+MIW + F Y+ +S N+I+ GD N+C + ID+ +P +N K +G+ EER
Sbjct: 149 RQDFKMIWLEDFQKYVVELQKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEEREW 208
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
L G D FR L PD++ YT+WS+R S R NKGWR+DY +VS+ + +K
Sbjct: 209 MTRFLSAGFTDTFRFLNPDKQ-EYTWWSYRFNS-RSKNKGWRIDYCMVSDNMKPKVKAAY 266
Query: 309 IRSDVQGSTHCPVVLRL 325
I +D S HCP VL +
Sbjct: 267 ILNDAVHSDHCPAVLEI 283
>gi|413952189|gb|AFW84838.1| hypothetical protein ZEAMMB73_201373 [Zea mays]
Length = 530
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 162/269 (60%), Gaps = 15/269 (5%)
Query: 69 TTKVKVSTWNVNGLRACVKKNA-CVEYILE-ENPDIMALQQIRCQEDEVPESFRKSL--S 124
T +K+ +WNVNGL+A +K V+ + + E+ D++ LQ+ + QE ++ E + +L
Sbjct: 267 TRALKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKMQEKDI-EVIKDTLLDG 325
Query: 125 HYHMFWIGS--DKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYV 180
+ + FW S G G ++++ KPL++KYG+ G+S+ GRV+T +F F +T YV
Sbjct: 326 YTNSFWTCSVSKLGYSGTAIISRVKPLSIKYGL-GISDHDTEGRVVTVEFDDFYLLTAYV 384
Query: 181 PNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTA 239
PNSG LK + +R+ WD +Y++ EL + +I++GDLN Q ID+ +P N ++A
Sbjct: 385 PNSGDGLKRLTYRVTEWDPSLGNYMK-ELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSA 443
Query: 240 GYTVEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSE 298
G+T EER +F L G VD FR +P+ AY+YW +R+ +AR NKGWRLDY LVSE
Sbjct: 444 GFTNEERESFGTNFLSKGFVDTFRKQHPNVV-AYSYWGYRH-NARKTNKGWRLDYFLVSE 501
Query: 299 QLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ + D I D+ S H P+ L L L
Sbjct: 502 SITEKVHDSYILPDISASDHSPLGLVLKL 530
>gi|258512235|ref|YP_003185669.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478961|gb|ACV59280.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 252
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 139/257 (54%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
++ +WNVNGLRACV K A + Y + D+ +Q+ + Q ++ ++ Y FW
Sbjct: 1 MRFVSWNVNGLRACVNKGAFLPYFESADADVFCIQETKLQAGQIELPIGEA---YQQFWN 57
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + T+ PL V+YG ++ GR+IT +F F +TVY PN+ L +
Sbjct: 58 YAERKGYSGTAVFTRITPLDVRYGFGDGNDPEGRIITLEFPSFYVVTVYTPNAKRDLSRL 117
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+R+ W+ F Y+ + L +I GDLNV + ID+ N N +G+T EER
Sbjct: 118 PYRLEWEDAFCAYLCA-LDREKPVIACGDLNVAHEEIDIKNAKSNRGNSGFTDEERAKMT 176
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
ELL G VD FR L+P+ YT+WS R N GWR+DY LVSE+L + I D I
Sbjct: 177 ELLAAGFVDTFRALHPNVTDKYTWWS-NMPGVRERNIGWRIDYFLVSERLRDRILDARID 235
Query: 311 SDVQGSTHCPVVLRLSL 327
V GS HCPVVL + L
Sbjct: 236 DHVLGSDHCPVVLEVDL 252
>gi|29346040|ref|NP_809543.1| exodeoxyribonuclease [Bacteroides thetaiotaomicron VPI-5482]
gi|383122288|ref|ZP_09942982.1| exodeoxyribonuclease III (xth) [Bacteroides sp. 1_1_6]
gi|29337934|gb|AAO75737.1| exodeoxyribonuclease [Bacteroides thetaiotaomicron VPI-5482]
gi|382984421|gb|EES70705.2| exodeoxyribonuclease III (xth) [Bacteroides sp. 1_1_6]
Length = 253
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 149/256 (58%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA K E++++ENPDI+ LQ+ + Q D+ P ++L + +
Sbjct: 1 MKIITYNVNGLRAAASK-GLPEWLVQENPDILCLQETKLQPDQYPAEVFEALGYKAYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK++P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAILTKQEPDHVEYGM-GIEAYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ ++ N+I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 119 QAFKMVWLEDFQKYVTELRKTRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G +D+FR LYP+++ YT+WS+R S R NKGWR+DY + SE + +K I
Sbjct: 179 TRFLSAGFIDSFRLLYPEKQ-EYTWWSYRFNS-RAKNKGWRIDYCMTSEPVRPMLKSASI 236
Query: 310 RSDVQGSTHCPVVLRL 325
+D S HCP+ L +
Sbjct: 237 LNDAVHSDHCPMALEI 252
>gi|359406465|ref|ZP_09199155.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
gi|357555725|gb|EHJ37349.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
Length = 249
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 144/256 (56%), Gaps = 10/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K +WNVNGLRACV+K+ E + D LQ+ + Q ++ F S+++
Sbjct: 1 MKFISWNVNGLRACVQKDF-EESFRTLDADFFCLQETKMQAGQLDLQFEGYTSYWNY--- 56
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG G + T+ PL+V YGI G+ + GRVIT + + F +T Y PNS L+
Sbjct: 57 AEKKGYSGTAIYTRHTPLSVTYGI-GIDEHDHEGRVITLEMEDFYLVTCYTPNSQDGLRR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+D+RM W+ F YI+ L + +I+ GDLNV + IDL NP N K AG+T EE
Sbjct: 116 LDYRMKWEDDFLQYIKG-LDAKKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFTDEECAKM 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G +D FR L+PD+ Y++WS+R K AR N GWR+DY + SE+L I I
Sbjct: 175 TAFLGEGFIDTFRTLHPDDP-TYSWWSYRFK-AREKNAGWRIDYFITSERLRERITSAAI 232
Query: 310 RSDVQGSTHCPVVLRL 325
++V GS HCPV L L
Sbjct: 233 HNEVFGSDHCPVELIL 248
>gi|53713851|ref|YP_099843.1| exodeoxyribonuclease [Bacteroides fragilis YCH46]
gi|60682064|ref|YP_212208.1| exodeoxyribonuclease [Bacteroides fragilis NCTC 9343]
gi|265764197|ref|ZP_06092765.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_16]
gi|336410171|ref|ZP_08590652.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_56FAA]
gi|383118771|ref|ZP_09939511.1| exodeoxyribonuclease III (xth) [Bacteroides sp. 3_2_5]
gi|423250356|ref|ZP_17231372.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL03T00C08]
gi|423255857|ref|ZP_17236786.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL03T12C07]
gi|423256970|ref|ZP_17237893.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL07T00C01]
gi|423266064|ref|ZP_17245067.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL07T12C05]
gi|423271726|ref|ZP_17250696.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL05T00C42]
gi|423276491|ref|ZP_17255432.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL05T12C13]
gi|423284050|ref|ZP_17262934.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 615]
gi|52216716|dbj|BAD49309.1| exodeoxyribonuclease [Bacteroides fragilis YCH46]
gi|60493498|emb|CAH08285.1| exodeoxyribonuclease [Bacteroides fragilis NCTC 9343]
gi|251946092|gb|EES86499.1| exodeoxyribonuclease III (xth) [Bacteroides sp. 3_2_5]
gi|263256805|gb|EEZ28151.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_16]
gi|335945633|gb|EGN07443.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_56FAA]
gi|387778446|gb|EIK40541.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL07T00C01]
gi|392649939|gb|EIY43611.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL03T12C07]
gi|392652665|gb|EIY46323.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL03T00C08]
gi|392696582|gb|EIY89774.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL05T00C42]
gi|392696803|gb|EIY89991.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL05T12C13]
gi|392701772|gb|EIY94926.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL07T12C05]
gi|404580596|gb|EKA85305.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 615]
Length = 253
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 151/257 (58%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ EENPD++ LQ+ + Q ++ P ++L + +
Sbjct: 1 MKIITYNVNGLRAAVNK-GLPEWLAEENPDVLCLQETKLQPEQYPAEAFEALGYKAYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK +P ++YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAILTKVEPDHIEYGM-GIEEYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ +S N+I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 119 QAFKMVWLEAFQKYVTELRKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G +D+FR LYP ++ YT+WS+R S R NKGWR+DY +VSE + + +K+ +I
Sbjct: 179 TRFLSAGFIDSFRTLYPQKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVSEPVRSLLKEAVI 236
Query: 310 RSDVQGSTHCPVVLRLS 326
++ S HCP+ L +
Sbjct: 237 LNNAVHSDHCPMALEIG 253
>gi|417303374|ref|ZP_12090432.1| exodeoxyribonuclease III [Rhodopirellula baltica WH47]
gi|421610893|ref|ZP_16052058.1| exodeoxyribonuclease III [Rhodopirellula baltica SH28]
gi|440713979|ref|ZP_20894567.1| exodeoxyribonuclease III [Rhodopirellula baltica SWK14]
gi|327540346|gb|EGF26932.1| exodeoxyribonuclease III [Rhodopirellula baltica WH47]
gi|408498347|gb|EKK02841.1| exodeoxyribonuclease III [Rhodopirellula baltica SH28]
gi|436441175|gb|ELP34441.1| exodeoxyribonuclease III [Rhodopirellula baltica SWK14]
Length = 256
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 150/256 (58%), Gaps = 5/256 (1%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA + K E++ E PD++ LQ+ + + ++V S+ L ++ ++
Sbjct: 5 LKLISWNVNGIRASMDK-GFREFVESEQPDVLCLQETKAEPEQVDLSWADELGYHQVWNT 63
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
+ +G GV ++ +PL V G+ + GRV+T F F + VY PNS L +
Sbjct: 64 ATKRGYSGVSTWSRVEPLKVTKGLSIEEHDNEGRVLTTTFDDFHLVNVYTPNSQRGLARL 123
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+RM WD+ F DY++ +L ++ GD+N + IDLANP N K AG++ +ER
Sbjct: 124 DYRMQWDEAFLDYVK-KLNRRKPVLFCGDVNCAHKEIDLANPKANRKNAGFSDQERAGLD 182
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+ + G +D+FR + D G Y++W++R+ AR N GWRLDY V+++ + + D IR
Sbjct: 183 AVTEAGFIDSFRQFH-DGPGHYSWWTYRS-DARARNIGWRLDYFWVAKKFWDRVADARIR 240
Query: 311 SDVQGSTHCPVVLRLS 326
++ GS HCPV L L+
Sbjct: 241 CEIHGSDHCPVELTLT 256
>gi|423306329|ref|ZP_17284328.1| exodeoxyribonuclease III (xth) [Bacteroides uniformis CL03T00C23]
gi|423309121|ref|ZP_17287111.1| exodeoxyribonuclease III (xth) [Bacteroides uniformis CL03T12C37]
gi|392679064|gb|EIY72457.1| exodeoxyribonuclease III (xth) [Bacteroides uniformis CL03T00C23]
gi|392685860|gb|EIY79171.1| exodeoxyribonuclease III (xth) [Bacteroides uniformis CL03T12C37]
Length = 254
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 154/257 (59%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +E PD++ LQ+ + Q ++ P +L + H +
Sbjct: 1 MKIITYNVNGLRAAVTK-GFPEWLAQEQPDVLCLQETKLQPEQYPAEALDALGYKHYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +L+K++P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAILSKQEPDHVEYGM-GIEEYDNEGRFIRADFGDVSVVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F +Y+ R+ +I+ GD N+C +++D+ +P +N +G+ EER
Sbjct: 119 QAFKMVWLEKFQEYVLELERTRPKLILCGDYNICHEAMDIHDPIRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L+ G +D+FR L+PD++ YT+WS+R S R NKGWR+DY +VSE + +K+ I
Sbjct: 179 TRFLNAGFIDSFRWLHPDKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVSEPVRPMLKEARI 236
Query: 310 RSDVQGSTHCPVVLRLS 326
DV S HCP++L ++
Sbjct: 237 LGDVVHSDHCPMLLEIT 253
>gi|34540111|ref|NP_904590.1| exodeoxyribonuclease III [Porphyromonas gingivalis W83]
gi|419970929|ref|ZP_14486399.1| exodeoxyribonuclease III [Porphyromonas gingivalis W50]
gi|34396422|gb|AAQ65489.1| exodeoxyribonuclease III [Porphyromonas gingivalis W83]
gi|392609650|gb|EIW92454.1| exodeoxyribonuclease III [Porphyromonas gingivalis W50]
Length = 254
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 154/257 (59%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ ++NVNGLRA +KK+ + ++ EENPD++ LQ+ + Q D+ + ++L + +
Sbjct: 1 MKIISYNVNGLRAAMKKD-LIGWLREENPDVLCLQETKMQNDQFEKEEFEALGYRSYLFS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV ++TK +P ++YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAIITKHQPDHIEYGM-GMEEYDAEGRFIRADFGDLSIVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W +HF Y+ +S N+I+ GD N+C + ID+ +P +N K +G+ EER
Sbjct: 119 QAFKMVWLEHFQSYVNELRKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G VD FRH +P E Y++WS+R + AR NKGWR+DY +V+ LA+ IK I
Sbjct: 179 SRFLADGYVDTFRHTHP-ELVLYSWWSYRFQ-ARSRNKGWRIDYCMVTNNLADRIKGADI 236
Query: 310 RSDVQGSTHCPVVLRLS 326
++ S HCP+VL ++
Sbjct: 237 LNEAVHSDHCPIVLEIA 253
>gi|226529129|ref|NP_001146906.1| LOC100280514 [Zea mays]
gi|195604980|gb|ACG24320.1| apurinic endonuclease-redox protein [Zea mays]
Length = 510
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 162/269 (60%), Gaps = 15/269 (5%)
Query: 69 TTKVKVSTWNVNGLRACVKKNA-CVEYILE-ENPDIMALQQIRCQEDEVPESFRKSL--S 124
T +K+ +WNVNGL+A +K V+ + + E+ D++ LQ+ + QE ++ E + +L
Sbjct: 247 TRALKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKMQEKDI-EVIKDTLLDG 305
Query: 125 HYHMFWIGS--DKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYV 180
+ + FW S G G ++++ KPL++KYG+ G+ + GRV+T +F F +T YV
Sbjct: 306 YTNSFWTCSVSKLGYSGTAIISRVKPLSIKYGL-GIPDHDTEGRVVTVEFDDFYLLTAYV 364
Query: 181 PNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTA 239
PNSG LK + +R+ WD +Y++ EL + +I++GDLN Q ID+ +P N ++A
Sbjct: 365 PNSGDGLKRLTYRVTEWDPSLGNYMK-ELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSA 423
Query: 240 GYTVEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSE 298
G+T EER +F L G VD FR +P+ AY+YW +R+ +AR NKGWRLDY LVSE
Sbjct: 424 GFTNEERESFGTNFLSKGFVDTFRKQHPNVV-AYSYWGYRH-NARKTNKGWRLDYFLVSE 481
Query: 299 QLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+A + D I D+ S H P+ L L L
Sbjct: 482 SIAEKVHDSYILPDISASDHSPLGLVLKL 510
>gi|195604738|gb|ACG24199.1| apurinic endonuclease-redox protein [Zea mays]
Length = 505
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 162/269 (60%), Gaps = 15/269 (5%)
Query: 69 TTKVKVSTWNVNGLRACVKKNA-CVEYILE-ENPDIMALQQIRCQEDEVPESFRKSL--S 124
T +K+ +WNVNGL+A +K V+ + + E+ D++ LQ+ + QE ++ E + +L
Sbjct: 242 TRALKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKMQEKDI-EVIKDTLLDG 300
Query: 125 HYHMFWIGS--DKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYV 180
+ + FW S G G ++++ KPL++KYG+ G+ + GRV+T +F F +T YV
Sbjct: 301 YTNSFWTCSVSKLGYSGTAIISRVKPLSIKYGL-GIPDHDTEGRVVTVEFDDFYLLTAYV 359
Query: 181 PNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTA 239
PNSG LK + +R+ WD +Y++ EL + +I++GDLN Q ID+ +P N ++A
Sbjct: 360 PNSGDGLKRLTYRVTEWDPSLGNYMK-ELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSA 418
Query: 240 GYTVEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSE 298
G+T EER +F L G VD FR +P+ AY+YW +R+ +AR NKGWRLDY LVSE
Sbjct: 419 GFTNEERESFGTNFLSKGFVDTFRKQHPNVV-AYSYWGYRH-NARKTNKGWRLDYFLVSE 476
Query: 299 QLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+A + D I D+ S H P+ L L L
Sbjct: 477 SIAEKVHDSYILPDISASDHSPLGLVLKL 505
>gi|147920374|ref|YP_685852.1| exodeoxyribonuclease III [Methanocella arvoryzae MRE50]
gi|110621248|emb|CAJ36526.1| exodeoxyribonuclease III [Methanocella arvoryzae MRE50]
Length = 257
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 149/258 (57%), Gaps = 6/258 (2%)
Query: 70 TKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMF 129
T++++ +WNVNGLRA +KK V+++ E+NPDI+ LQ+ R E+++P S ++ F
Sbjct: 2 TELEILSWNVNGLRAILKK-GFVDFMQEKNPDILCLQETRASEEQLPPEIMTSWGYHVYF 60
Query: 130 WIGSDKGQGGVGLLTKEKPLTVK--YGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKL 187
G KG GV +L+K KPL+V +GIP ++ GRV+ A + F + +Y PN
Sbjct: 61 ASGEKKGYSGVAILSKVKPLSVARGFGIPEF-DREGRVLIADYGAFVLLNIYFPNGKASP 119
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+ + ++M + F +Y I++ GD+N + ID+A P +N K +G+ ER
Sbjct: 120 ERLAYKMRFYNAFLEYADRLKAQGRKIVVCGDVNTAHKEIDIARPRENSKISGFLPVERA 179
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
+L+ G VD FR L+ D+ G YT+W + AR N GWR+DY VSE L +K
Sbjct: 180 WMDKLIAHGYVDTFR-LFNDQPGQYTFWDTVTR-ARERNVGWRIDYFFVSENLKEQLKAA 237
Query: 308 IIRSDVQGSTHCPVVLRL 325
I +++ GS HCP+ +RL
Sbjct: 238 FIMTEIMGSDHCPIGIRL 255
>gi|445063495|ref|ZP_21375690.1| exodeoxyribonuclease [Brachyspira hampsonii 30599]
gi|444505124|gb|ELV05691.1| exodeoxyribonuclease [Brachyspira hampsonii 30599]
Length = 261
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/262 (38%), Positives = 157/262 (59%), Gaps = 19/262 (7%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA KK V++I +ENPDI+ LQ+ + E+++PE R ++ Y +F
Sbjct: 4 LKIISWNVNGIRAAYKK-GLVDFIKKENPDIICLQETKAFEEQLPEDLR-NIEGYELFIN 61
Query: 132 GSD----KGQGGVGLLTKEKP---LTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSG 184
+D KG GV + TK KP + K G S++ GR+++ +F FT VY PN G
Sbjct: 62 PADPEVKKGYSGVAIYTKLKPNKEIKNKLG-SKFSDREGRILSLEFDDFTIFNVYFPNGG 120
Query: 185 IKLKAIDFRMIWDQHFYDYIQ---SELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGY 241
+ +++ FYD I ++L+S +N+I+ GD+N+ ++IDLA P +N K+ G+
Sbjct: 121 KSEEHFQYKL----SFYDEITKHLTKLKSKTNVILCGDMNIAHEAIDLARPKENEKSIGF 176
Query: 242 TVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLA 301
EER E L+ G D FR ++ E G Y++W + +S R N GWR+DY V+ ++A
Sbjct: 177 LPEEREKITEFLNKGFTDTFR-MFVKEGGHYSWWDMKTRS-REKNVGWRIDYFFVNNEIA 234
Query: 302 NNIKDCIIRSDVQGSTHCPVVL 323
NIK I +DV GS HCP+++
Sbjct: 235 PNIKRADILTDVMGSDHCPILI 256
>gi|32475225|ref|NP_868219.1| exodeoxyribonuclease [Rhodopirellula baltica SH 1]
gi|32445766|emb|CAD78497.1| exodeoxyribonuclease [Rhodopirellula baltica SH 1]
Length = 256
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 149/256 (58%), Gaps = 5/256 (1%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA + K E++ E PD++ LQ+ + + ++V S+ L ++ ++
Sbjct: 5 LKLISWNVNGIRASMDK-GFREFVESEQPDVLCLQETKAEPEQVDLSWADELGYHQVWNT 63
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
+ +G GV ++ +PL V G+ + GRV+T F F + VY PNS L +
Sbjct: 64 ATKRGYSGVSTWSRVEPLKVTKGLSIEEHDNEGRVLTTTFDDFHLVNVYTPNSQRGLARL 123
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+RM WD+ F DY++ +L ++ GD+N + IDLANP N K AG++ +ER
Sbjct: 124 DYRMQWDEAFLDYVK-KLNRRKPVLFCGDVNCAHKEIDLANPKANRKNAGFSDQERAGLD 182
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+ + G +D+FR + D G Y++W++R+ AR N GWRLDY V++ + + D IR
Sbjct: 183 AVTEAGFIDSFRQFH-DGPGHYSWWTYRS-DARARNIGWRLDYFWVAKNFWDRVADARIR 240
Query: 311 SDVQGSTHCPVVLRLS 326
++ GS HCPV L L+
Sbjct: 241 CEIHGSDHCPVELTLT 256
>gi|328956310|ref|YP_004373643.1| exodeoxyribonuclease III Xth [Coriobacterium glomerans PW2]
gi|328456634|gb|AEB07828.1| exodeoxyribonuclease III Xth [Coriobacterium glomerans PW2]
Length = 283
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/271 (38%), Positives = 149/271 (54%), Gaps = 23/271 (8%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+ ++WNVNGLRA +KK I N DI+A+Q+ + QE ++ L+ YH W
Sbjct: 20 RFASWNVNGLRALMKKEPDFSEIAASLNADILAIQETKLQEGQID----LDLAGYHQTWS 75
Query: 131 IGSDKGQGGVGLLTKEKPL----------TVKYGI---PGVSNQRGRVITAKFKRFTFIT 177
+ KG G + ++E+P+ V+ G P + + GRV +F+RF F
Sbjct: 76 YAARKGYSGTAVFSREQPIRTLRADAMLDVVEGGELLEPAI--REGRVCALEFERFWFAD 133
Query: 178 VYVPNSGIKLKAIDFRMIWDQHFYDYI-QSELRSNSNIIISGDLNVCLQSIDLANPDKNV 236
VY PNS L + R+ WD+ + ++ Q E + ++ GD NV IDL NP N
Sbjct: 134 VYTPNSQDGLARLPVRLAWDEAYRAFLKQLERMGDKPVVTCGDFNVAHNEIDLRNPKSNR 193
Query: 237 KTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLV 296
AG++ EER +F LL+ G D FR+LYPD AY++WS+R AR N GWR+DY LV
Sbjct: 194 GNAGFSDEERASFSRLLEAGFTDTFRYLYPDVRDAYSWWSYRFH-ARRTNAGWRIDYFLV 252
Query: 297 SEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
S+ + + I + IR DV GS HCPV L ++L
Sbjct: 253 SDSVRDRIVEATIRQDVFGSDHCPVELVIAL 283
>gi|384207748|ref|YP_005593468.1| exodeoxyribonuclease [Brachyspira intermedia PWS/A]
gi|343385398|gb|AEM20888.1| exodeoxyribonuclease [Brachyspira intermedia PWS/A]
Length = 261
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/262 (38%), Positives = 156/262 (59%), Gaps = 19/262 (7%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA KK V++I +ENPDI+ LQ+ + E+++PE R ++ Y +F
Sbjct: 4 LKIISWNVNGIRAAYKK-GLVDFIKKENPDIICLQETKAFEEQLPEDLR-NIEGYELFIN 61
Query: 132 GSD----KGQGGVGLLTKEKP---LTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSG 184
+D KG GV + TK KP + K G S++ GR+++ +F FT VY PN G
Sbjct: 62 PADPEVKKGYSGVAIYTKLKPNKEIKNKLG-SKFSDREGRILSLEFDDFTIFNVYFPNGG 120
Query: 185 IKLKAIDFRMIWDQHFYDYIQ---SELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGY 241
+ +++ FYD I S+L+ N+N+I+ GD+N+ ++IDLA P +N K+ G+
Sbjct: 121 KSEEHFQYKL----SFYDEITKHLSKLKKNTNVILCGDMNIAHEAIDLARPKENEKSIGF 176
Query: 242 TVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLA 301
EER E L+ G D FR ++ E G Y++W + +S R N GWR+DY V+ ++
Sbjct: 177 LPEEREKITEFLNKGFTDTFR-MFVKEGGHYSWWDMKTRS-REKNVGWRIDYFFVNNEIT 234
Query: 302 NNIKDCIIRSDVQGSTHCPVVL 323
NIK I +DV GS HCP+++
Sbjct: 235 PNIKRADILTDVMGSDHCPILI 256
>gi|301310211|ref|ZP_07216150.1| exodeoxyribonuclease III [Bacteroides sp. 20_3]
gi|423336452|ref|ZP_17314199.1| exodeoxyribonuclease III (xth) [Parabacteroides distasonis
CL09T03C24]
gi|300831785|gb|EFK62416.1| exodeoxyribonuclease III [Bacteroides sp. 20_3]
gi|409240927|gb|EKN33701.1| exodeoxyribonuclease III (xth) [Parabacteroides distasonis
CL09T03C24]
Length = 284
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 148/257 (57%), Gaps = 6/257 (2%)
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
K+K+ T+N NGLRA V K E++ +E PD++ +Q+ + Q D+ P ++L + +
Sbjct: 31 KLKIITYNTNGLRAAVGK-GLPEWLAQEQPDVLCIQETKLQPDQFPSETFEALGYKSYLF 89
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG GV +LTK++P ++YG+ G+ + GR + A F + ++VY P+ +
Sbjct: 90 SAQKKGYSGVAILTKQEPDHIEYGM-GIEKYDNEGRFLRADFGDVSIVSVYHPSGTSGDE 148
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
DF+M+W + F Y+ +S N+I+ GD N+C + ID+ +P +N K +G+ EER
Sbjct: 149 RQDFKMLWLEDFQKYVVELQKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEEREW 208
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
L G D FR L PD++ YT+WS+R S R NKGWR+DY +VS+ + +K
Sbjct: 209 MTRFLSAGFTDTFRFLNPDKQ-EYTWWSYRFNS-RSKNKGWRIDYCMVSDNMKPKVKAAY 266
Query: 309 IRSDVQGSTHCPVVLRL 325
I +D S HCP VL +
Sbjct: 267 ILNDAVHSDHCPAVLEI 283
>gi|224159467|ref|XP_002199909.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like, partial
[Taeniopygia guttata]
Length = 235
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 133/237 (56%), Gaps = 5/237 (2%)
Query: 94 YILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSD--KGQGGVGLLTKEKPLTV 151
++ EE PD++ LQ+ +C VP R H FW + G GVGLL + +PL V
Sbjct: 1 WVQEEAPDVLCLQETKCAAAAVPAEVRALPGLPHQFWCSAKDRPGYSGVGLLARSEPLDV 60
Query: 152 KYGI-PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRS 210
YGI G +Q V+T + + YVPN+G + A++ R+ D F +++ L +
Sbjct: 61 TYGIGEGRMDQTAGVMTTEIPSLFVVCAYVPNAGRGMVALEPRLRLDAAFLQFLR-RLDA 119
Query: 211 NSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEG 270
+++ GDLNV IDL +P N + G+T +ER F LL G VD+FRHLYP G
Sbjct: 120 RKPVLLCGDLNVAHADIDLCHPRANRASPGFTPQERDGFSRLLAAGFVDSFRHLYPAARG 179
Query: 271 AYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
A+T+W++ AR N GWRLDY +VS++L + D IR+ V GS HCP+ L++
Sbjct: 180 AFTFWTYLG-GARARNVGWRLDYAVVSQRLLGALCDSKIRNTVPGSDHCPITALLAV 235
>gi|261880757|ref|ZP_06007184.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
gi|270332533|gb|EFA43319.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
Length = 267
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/275 (39%), Positives = 149/275 (54%), Gaps = 27/275 (9%)
Query: 72 VKVSTWNVNGLRACVKKNACVE----------YILEENPDIMALQQIRCQEDEVPESFRK 121
+K +WNVNGLRACVK E Y E + D LQ+ + Q ++ F
Sbjct: 1 MKFVSWNVNGLRACVKPKVDAEGNVISKGFEAYFNELDADFFCLQETKMQAGQLDLQF-- 58
Query: 122 SLSHYHMFW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITV 178
+ Y +W KG G + TK +P+ V G+ G+ + GRVIT ++ F + V
Sbjct: 59 --NGYRSYWNYAERKGYSGTAIYTKHEPMNVACGM-GIEEHDNEGRVITLEYPEFYLVNV 115
Query: 179 YVPNSG------IKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANP 232
Y PNS +K K + +RM W++ F YI+ L +I+ GDLNV Q ID+ N
Sbjct: 116 YTPNSQESLPGEVKPKRLGYRMKWEEDFRAYIK-RLNETKPVIVCGDLNVAHQEIDIKNA 174
Query: 233 DKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLD 292
N AG+T EER LLD G +D FR +YP E+ Y++WS+R + AR N GWR+D
Sbjct: 175 KTNRNNAGFTDEEREKMTILLDNGFIDTFRTMYP-EQVIYSWWSYRFR-ARERNTGWRID 232
Query: 293 YHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
Y LVSE+L N I D I +++ GS HCPV L L+L
Sbjct: 233 YFLVSERLRNQIVDARIHTEIYGSDHCPVELELNL 267
>gi|219884049|gb|ACL52399.1| unknown [Zea mays]
Length = 493
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/269 (38%), Positives = 162/269 (60%), Gaps = 15/269 (5%)
Query: 69 TTKVKVSTWNVNGLRACVKKNA-CVEYILE-ENPDIMALQQIRCQEDEVPESFRKSL--S 124
T +K+ +WNVNGL+A +K V+ + + E+ D++ LQ+ + QE ++ E + +L
Sbjct: 230 TRALKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKMQEKDI-EVIKDTLLDG 288
Query: 125 HYHMFWIGS--DKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYV 180
+ + FW S G G ++++ KPL++KYG+ G+S+ GRV+T +F F +T YV
Sbjct: 289 YTNSFWTCSVSKLGYSGTAIISRVKPLSIKYGL-GISDHDTEGRVVTVEFDDFYLLTAYV 347
Query: 181 PNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTA 239
PNSG LK + +R+ WD +Y++ EL + +I++GDLN Q ID+ +P + ++A
Sbjct: 348 PNSGDGLKRLTYRVTEWDPSLGNYMK-ELEKSKPVILTGDLNCAHQEIDIHDPAGDRRSA 406
Query: 240 GYTVEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSE 298
G+T EER +F L G VD FR +P+ AY+YW +R+ +AR NKGWRLDY LVSE
Sbjct: 407 GFTNEERESFGTNFLSKGFVDTFRKQHPNVV-AYSYWGYRH-NARKTNKGWRLDYFLVSE 464
Query: 299 QLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ + D I D+ S H P+ L L L
Sbjct: 465 SITEKVHDSYILPDISASDHSPLGLVLKL 493
>gi|424827324|ref|ZP_18252133.1| exodeoxyribonuclease III [Clostridium sporogenes PA 3679]
gi|365980247|gb|EHN16283.1| exodeoxyribonuclease III [Clostridium sporogenes PA 3679]
Length = 253
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 151/255 (59%), Gaps = 4/255 (1%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNGLRA KKN +E+I EENPDI+ +Q+ + QE+++ ++ + +Y F
Sbjct: 1 MRIYSWNVNGLRAVAKKN-FLEWIGEENPDILCIQETKLQENQLEDNIKNIDGYYSYFSF 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG GV TKE+P++VK+GI + GR++ +FK F + +Y PN + +
Sbjct: 60 AHKKGYSGVATYTKEEPISVKHGISIERFDSEGRILITEFKDFILLNIYFPNGQRDEERL 119
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+++ + ++Y + + ++I GD N IDL NP N K +G+ ER
Sbjct: 120 QYKLDFYAALFNYCDELVEAGKKLVICGDYNTAHNEIDLKNPKANEKASGFLRIERDWLD 179
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
++++ G D FR++ PD + Y++WS+R K AR N GWR+DYH VS L + +++ I
Sbjct: 180 KIIERGYTDTFRNMNPD-KIKYSWWSYRFK-ARERNAGWRIDYHFVSNNLLDRVENTEIL 237
Query: 311 SDVQGSTHCPVVLRL 325
++V GS HCPV+L L
Sbjct: 238 NEVYGSDHCPVMLEL 252
>gi|417317886|ref|ZP_12104489.1| exodeoxyribonuclease III [Listeria monocytogenes J1-220]
gi|328473849|gb|EGF44679.1| exodeoxyribonuclease III [Listeria monocytogenes J1-220]
Length = 225
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 139/229 (60%), Gaps = 10/229 (4%)
Query: 102 IMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS- 159
++++ QE ++ L Y +W KG G + TK +PL+V+YG+ GV
Sbjct: 4 FFVCRKLKLQEGQI----ELDLPAYKDYWNYAVKKGYSGTAIFTKVEPLSVQYGL-GVPE 58
Query: 160 -NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISG 218
+ GRVIT +F+ F +TVY PNS +LK +D+RM ++ +Y+++ L +++ G
Sbjct: 59 HDTEGRVITLEFEEFFMVTVYTPNSQAELKRLDYRMTFEDAILEYVKN-LDKTKPVVLCG 117
Query: 219 DLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFR 278
DLNV + IDL NP N K AG++ EER F LD G +D+FR+ YPD AY++WS+R
Sbjct: 118 DLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFYPDLTDAYSWWSYR 177
Query: 279 NKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+AR N GWR+DY +VSE+L + + D I +DV GS HCPV L L+L
Sbjct: 178 -MNARARNTGWRIDYFVVSERLKDKLVDAKIHADVLGSDHCPVELELNL 225
>gi|325105846|ref|YP_004275500.1| exodeoxyribonuclease III Xth [Pedobacter saltans DSM 12145]
gi|324974694|gb|ADY53678.1| exodeoxyribonuclease III Xth [Pedobacter saltans DSM 12145]
Length = 255
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 152/259 (58%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ ++NVNG+RA + K ++++ N D++ LQ+I+ D++ + + S YH FW
Sbjct: 1 MKIISYNVNGIRAAINK-GWLDWLQATNADVVCLQEIKATPDQIQDIHKLSELGYHHFWY 59
Query: 132 -GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPN--SGIK 186
KG G +LTK +PL V+YG G+ + GRVI A F++F+ I+ Y P+ SG +
Sbjct: 60 PAKKKGYSGTAILTKHEPLHVEYGC-GIEAYDDEGRVIRADFEKFSVISAYFPSGSSGDE 118
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
+ ++ + D F Y + + N++I GD N+C ++ID+ NP N ++G+ EER
Sbjct: 119 RQHFKYQFLAD--FEIYAADLMNTYPNLLICGDYNICHRAIDIHNPKSNANSSGFLPEER 176
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
+++G +D FRHL PD YT+WS+R AR N GWR+DYHL+S + NIK
Sbjct: 177 EWMERFINSGFIDTFRHLNPDPH-HYTWWSYR-AGARAKNLGWRIDYHLLSSTMVENIKR 234
Query: 307 CIIRSDVQGSTHCPVVLRL 325
I + + S HCP++L L
Sbjct: 235 AAILPEAKHSDHCPILLEL 253
>gi|319902391|ref|YP_004162119.1| exodeoxyribonuclease III Xth [Bacteroides helcogenes P 36-108]
gi|319417422|gb|ADV44533.1| exodeoxyribonuclease III Xth [Bacteroides helcogenes P 36-108]
Length = 267
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 150/257 (58%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +E PD++ LQ+ + Q ++ P SL + H +
Sbjct: 14 MKIITYNVNGLRAAVTK-GFPEWLAQEQPDVLCLQETKLQPEQYPADALDSLGYKHYLYS 72
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +L K +P V+YG+ G+ + GR + A + + ++VY P+ +
Sbjct: 73 ARKKGYSGVAILAKREPDRVEYGM-GMEEYDSEGRFLRADYDDLSIVSVYHPSGTSGDER 131
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F +Y+ R+ +I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 132 QAFKMVWLEKFQEYVLELQRTRPKLILCGDYNICHEPIDIHDPIRNATNSGFLPEEREWM 191
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LD G D+FR L+PD++ YT+WS+R S R NKGWR+DY +V+E + +KD I
Sbjct: 192 TRFLDAGFTDSFRFLHPDKQ-EYTWWSYRFNS-RARNKGWRIDYCMVNEPVRPMLKDARI 249
Query: 310 RSDVQGSTHCPVVLRLS 326
+D S HCP++L ++
Sbjct: 250 LNDAVHSDHCPMLLEIT 266
>gi|350645454|emb|CCD59806.1| ap endonuclease, putative [Schistosoma mansoni]
Length = 281
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 137/221 (61%), Gaps = 9/221 (4%)
Query: 73 KVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG 132
K+ +WNVNG+RA +K N +EYI +EN DI +Q+ +C ++P + + Y FW
Sbjct: 66 KIVSWNVNGIRAVIKNNG-MEYIKKENADIFCIQETKCPLHKIPSEAK--VPSYQSFWSS 122
Query: 133 SDK-GQGGVGLLTKEKPLTVKYGI-PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
+DK G G L +K P+ V YGI + + GRVITA++ +F +T YVPNSG L +
Sbjct: 123 ADKAGYAGTALFSKISPIKVTYGIGKKMHDDEGRVITAEYDKFYLVTAYVPNSGQGLIRL 182
Query: 191 DFR-MIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+R WD F +Y++ +L S +I+ GDLNV + IDLA P+ N KTAG+T +ER F
Sbjct: 183 PYREKEWDPDFLEYLR-KLDSTKPVIVCGDLNVAHEEIDLARPETNHKTAGFTDQERSGF 241
Query: 250 RELLDTG-LVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGW 289
+LL + L+D +RH YPD G Y++WS+R + +NN GW
Sbjct: 242 TKLLSSANLIDTYRHFYPDRRGVYSFWSYRTAARSINN-GW 281
>gi|262381739|ref|ZP_06074877.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_33B]
gi|262296916|gb|EEY84846.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_33B]
Length = 253
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 147/256 (57%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+N NGLRA V K E++ +E PD++ +Q+ + Q D+ P ++L + +
Sbjct: 1 MKIITYNTNGLRAAVGK-GLPEWLAQEQPDVLCIQETKLQPDQFPSETFEALGYKSYLFS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK++P ++YG+ G+ + GR + A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAILTKQEPDHIEYGM-GIEKYDNEGRFLRADFGDVSIVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
DF+MIW + F Y+ +S N+I+ GD N+C + ID+ +P +N K +G+ EER
Sbjct: 119 QDFKMIWLEDFQKYVVELQKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G D FR L PD++ YT+WS+R S R NKGWR+DY +VS+ + +K I
Sbjct: 179 TRFLSAGFTDTFRFLNPDKQ-EYTWWSYRFNS-RSKNKGWRIDYCMVSDNMKPKVKAAYI 236
Query: 310 RSDVQGSTHCPVVLRL 325
+D S HCP VL +
Sbjct: 237 LNDAVHSDHCPAVLEI 252
>gi|385800322|ref|YP_005836726.1| exodeoxyribonuclease III Xth [Halanaerobium praevalens DSM 2228]
gi|309389686|gb|ADO77566.1| exodeoxyribonuclease III Xth [Halanaerobium praevalens DSM 2228]
Length = 258
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 153/258 (59%), Gaps = 6/258 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNG+RA VKK +++I E PDI+ LQ+IR Q+ ++ + R ++Y F
Sbjct: 1 MRIYSWNVNGIRA-VKKKGFLDWINNEQPDILGLQEIRIQDHQLKDDLRDLDNYYSYFNF 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
G KG GV L TK +PL V GI G+ + GRVI A+F+ F + +Y PN K
Sbjct: 60 GQKKGYSGVALYTKIEPLNVWSGI-GIKRFDYEGRVIGAEFEDFYLLNIYFPNGRSSKKR 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++++ + DY ++ + ++I GD N IDL +P N KT+G+ ER
Sbjct: 119 LNYKLDFYDAILDYSENLRKKGKEVVICGDYNTAHHPIDLHDPASNKKTSGFMPIEREWL 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+L + G +D++R+ P++E Y++WS+R K AR N GWR+DYH VS L + + + I
Sbjct: 179 DKLEEKGYLDSYRYFNPEKE-CYSWWSYRTK-ARSRNAGWRIDYHFVSAGLESKLINADI 236
Query: 310 RSDVQGSTHCPVVLRLSL 327
++V GS HCPV + L+L
Sbjct: 237 LTEVMGSDHCPVTITLAL 254
>gi|148379451|ref|YP_001253992.1| exodeoxyribonuclease III [Clostridium botulinum A str. ATCC 3502]
gi|153934303|ref|YP_001383830.1| exodeoxyribonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|153935156|ref|YP_001387380.1| exodeoxyribonuclease III [Clostridium botulinum A str. Hall]
gi|148288935|emb|CAL83022.1| putative exodeoxyribonuclease [Clostridium botulinum A str. ATCC
3502]
gi|152930347|gb|ABS35847.1| exodeoxyribonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|152931070|gb|ABS36569.1| exodeoxyribonuclease III [Clostridium botulinum A str. Hall]
Length = 253
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 153/256 (59%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNGLRA KKN +E+I EE+PDI+ +Q+ + QE+++ ++ + +Y F
Sbjct: 1 MRIYSWNVNGLRAVAKKNF-IEWIGEESPDILCIQETKLQENQLEDNIKNIDGYYSYFSF 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK KP++VK+ I G+ + GR++ FK FT + +Y PN +
Sbjct: 60 AVKKGYSGVATYTKVKPISVKHSI-GIEKFDSEGRILITGFKDFTLLNIYFPNGQRDEER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +++ + + ++Y ++ ++I GD N IDL NP N KT+G+ ER
Sbjct: 119 LQYKLDFYEALFNYCDELVKEGKKLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
++++ G D FR++ PD + Y++WS+R K AR N GWR+DYH VS L + +++ I
Sbjct: 179 DKIIERGYTDTFRNMNPD-KIKYSWWSYRFK-ARERNAGWRIDYHFVSNNLLDRVENTEI 236
Query: 310 RSDVQGSTHCPVVLRL 325
++V GS HCPV+L L
Sbjct: 237 LNEVYGSDHCPVMLEL 252
>gi|435851875|ref|YP_007313461.1| exodeoxyribonuclease III [Methanomethylovorans hollandica DSM
15978]
gi|433662505|gb|AGB49931.1| exodeoxyribonuclease III [Methanomethylovorans hollandica DSM
15978]
Length = 252
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 138/253 (54%), Gaps = 4/253 (1%)
Query: 76 TWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK 135
+WNVNGLRA KK +E PDI+ LQ+ + QE+++P + R + F K
Sbjct: 3 SWNVNGLRAAYKK-GFMEIFTAHGPDILCLQETKAQEEQLPSALRHVDGYKAYFSSAEKK 61
Query: 136 GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRM 194
G GVGL TK++PL V+Y + + GRVI + F F VY PN + +DF+M
Sbjct: 62 GYSGVGLYTKQEPLEVRYELGKAKFDTEGRVIASDFGDFILFNVYFPNGKASKERLDFKM 121
Query: 195 IWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLD 254
+ F D++ + III GD+N + IDLA P +N K +G+ ER +L+D
Sbjct: 122 EFYDAFLDHLDALKAQGKKIIICGDVNTAHKEIDLARPKENEKVSGFLPLERAWIGKLID 181
Query: 255 TGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQ 314
G +D R ++ D+ G YT+W + K AR N GWR+DY S+ L +NI I D+
Sbjct: 182 HGYLDTLR-MFSDQPGQYTWWDMKTK-ARERNVGWRIDYFFASDNLKDNIISAFILPDIM 239
Query: 315 GSTHCPVVLRLSL 327
GS HCP+ L L +
Sbjct: 240 GSDHCPIGLELEI 252
>gi|402813355|ref|ZP_10862950.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
gi|402509298|gb|EJW19818.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
Length = 263
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 147/253 (58%), Gaps = 7/253 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRACV K ++Y E + DI +Q+ + QE ++ + Y +W
Sbjct: 1 MKLISWNVNGLRACVNK-GFLDYFREMDADIFCVQETKLQEGQIDLDLGE---EYEQYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG G + TK+KPL+V+YGI GR++T +F+ F + VY PNS L +
Sbjct: 57 YALKKGYSGTAVFTKKKPLSVRYGIEENEEPEGRILTLEFESFFLVNVYTPNSKRDLSRL 116
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+ R+ W++ F Y+Q +L + +I+ GDLNV Q IDL N N +G+T EER
Sbjct: 117 EERLEWEERFRFYLQ-KLDACKPVIVCGDLNVAHQVIDLKNSKSNHGNSGFTTEEREKMT 175
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
L D G D FRH YPD+ AYT+WS+ K R N GWR+DY LVS +L + + D I
Sbjct: 176 ILQDAGFTDTFRHFYPDQTDAYTWWSYMPK-VRERNIGWRIDYFLVSSRLRDFLVDARID 234
Query: 311 SDVQGSTHCPVVL 323
S++ GS HCP+ L
Sbjct: 235 SNILGSDHCPIHL 247
>gi|340347509|ref|ZP_08670617.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433653537|ref|YP_007297391.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|339609205|gb|EGQ14080.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433304070|gb|AGB29885.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
Length = 266
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 145/272 (53%), Gaps = 25/272 (9%)
Query: 72 VKVSTWNVNGLRACVK----------KNACVEYILEENPDIMALQQIRCQEDEVPESFRK 121
+K +WNVNGLRACVK Y E + D LQ+ + Q ++ F
Sbjct: 1 MKFISWNVNGLRACVKPKTDDAGNVTSKGFEAYFKELDADFFCLQETKLQAGQIDLQF-- 58
Query: 122 SLSHYHMFW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVY 179
Y +W KG G + T+ +PL V YGI + GRVIT ++ F IT Y
Sbjct: 59 --DGYQSYWNYAEKKGYSGTAVFTRHEPLGVTYGIGKEEHDHEGRVITLEYPDFYLITCY 116
Query: 180 VPNSG------IKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPD 233
PNS +K + + +RM W+ F +Y+ L N +I+ GDLNV + +DL NP
Sbjct: 117 TPNSQDTIKGELKPRRLGYRMTWEDDFREYMM-RLDKNKPVIMCGDLNVAHEEMDLKNPK 175
Query: 234 KNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDY 293
N AG+T EER LL +G +D+FR LYP E+ Y++WS+R + AR N GWR+DY
Sbjct: 176 TNHNNAGFTDEEREKMTTLLGSGFLDSFRMLYP-EQVTYSWWSYRMR-AREKNTGWRIDY 233
Query: 294 HLVSEQLANNIKDCIIRSDVQGSTHCPVVLRL 325
+ S++L + I D I +++ GS HCPV L L
Sbjct: 234 FITSDRLRDRIADAKIHTEIMGSDHCPVELDL 265
>gi|307108235|gb|EFN56476.1| hypothetical protein CHLNCDRAFT_30910 [Chlorella variabilis]
Length = 371
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 155/277 (55%), Gaps = 23/277 (8%)
Query: 69 TTKVKVSTWNVNGLRACVKK-------------NACVEYILEENPDIMALQQIRCQEDEV 115
T + +WNV GLRA +KK V E D++ LQ+I+ QED
Sbjct: 96 TPASHILSWNVAGLRALLKKVKEVEAGTRNENIPTLVALAEAEQADVLCLQEIKLQEDHC 155
Query: 116 PESFRKS--LSHYHMFWIGS--DKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKF 170
E ++ +H+ W S KG G +++++ PL+V GI + GRVITA+F
Sbjct: 156 VEVLKELNLPEGWHVSWNCSRDKKGYSGTAIVSRQAPLSVSCGIGAEEHDGEGRVITAEF 215
Query: 171 KRFTFITVYVPNSGIKLKAIDFRM-IWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDL 229
F + Y PNSG LK + +R+ WD+ F Y++ L + ++++GDLNV ID+
Sbjct: 216 SAFYLVNCYTPNSGEGLKRLGYRVEKWDKDFSAYLK-RLEQHKPVVVTGDLNVAPAEIDI 274
Query: 230 ANPDKNVKTAGYTVEERRNFRE-LLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKG 288
+P N+K+AG+T +ER +F LL G VD FR YP E AYTYW +R +AR NNKG
Sbjct: 275 HSPKTNLKSAGFTPQERASFAANLLGQGFVDCFRTQYP-EAVAYTYWGYRF-NARGNNKG 332
Query: 289 WRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRL 325
WRLD+ LVS+QL +++ DC + GS HCP+ L L
Sbjct: 333 WRLDHFLVSQQLHSSLHDCYHLPAIMGSDHCPLGLVL 369
>gi|334146357|ref|YP_004509284.1| exodeoxyribonuclease III [Porphyromonas gingivalis TDC60]
gi|333803511|dbj|BAK24718.1| exodeoxyribonuclease III [Porphyromonas gingivalis TDC60]
Length = 254
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 153/257 (59%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ ++NVNGLRA +KK+ + ++ EENPD++ LQ+ + Q D+ + ++L + +
Sbjct: 1 MKIISYNVNGLRAAMKKD-LIGWLREENPDVLCLQETKMQNDQFEKEEFEALGYRSYLFS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV ++TK +P ++YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAIITKHQPDHIEYGM-GMEEYDAEGRFIRADFGDLSIVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W +HF Y+ +S N+I+ GD N+C + ID+ +P +N K +G+ EER
Sbjct: 119 QAFKMVWLEHFQSYVNELRKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G VD FRH +P E Y++WS+R + AR NKGWR+DY +V+ L + IK I
Sbjct: 179 SRFLADGYVDTFRHTHP-ELVLYSWWSYRFQ-ARSRNKGWRIDYCMVTNNLTDRIKGADI 236
Query: 310 RSDVQGSTHCPVVLRLS 326
++ S HCP+VL ++
Sbjct: 237 LNEAVHSDHCPIVLEIA 253
>gi|297569473|ref|YP_003690817.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
gi|296925388|gb|ADH86198.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
Length = 490
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 151/266 (56%), Gaps = 8/266 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S P T +++++WNVNGLRA KK E E + D++A+Q+I+ D++P R +L
Sbjct: 230 SAAPGGTSLRLASWNVNGLRAIAKKG-FAELAGELDADLLAIQEIKAHPDQLPAEAR-AL 287
Query: 124 SHYHMFWIGSD-KGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYV 180
Y FW+ + KG GV + ++ +PL V YG+ Q GRV+T +F F + Y+
Sbjct: 288 PGYQAFWLPAKRKGYSGVAIYSRLEPLKVLYGMGQEEKYEQEGRVLTMEFADFFLVNAYL 347
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+ +L + F++ + +HF + ++ L + N+++ GDLNV + IDLA P +N ++ G
Sbjct: 348 PNAQPELARLPFKLDFCRHFQQFCEN-LATQKNVVVCGDLNVAHREIDLARPQENQQSPG 406
Query: 241 YTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQL 300
++ ER L G D FR L+ E G YT+WS+R AR N GWR+DY +
Sbjct: 407 FSPAERAWLDGFLANGFTDTFR-LFNQEGGNYTWWSYRG-GARQRNVGWRIDYFCIDSAG 464
Query: 301 ANNIKDCIIRSDVQGSTHCPVVLRLS 326
+++ IR ++ GS HCPV L L
Sbjct: 465 RRRVREAGIRPEIMGSDHCPVTLTLG 490
>gi|348027881|ref|YP_004870567.1| exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
gi|347945224|gb|AEP28574.1| Exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
Length = 254
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 102/260 (39%), Positives = 159/260 (61%), Gaps = 10/260 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA +KK+ ++ + + D++ LQ+ + Q+++V E+ + L+ YH+F
Sbjct: 1 MKLVSWNVNGVRAAIKKDF-LQSMASLDCDVLCLQETKAQDEQVIEALCE-LNGYHIFTN 58
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG G ++T+ +P+ V + G+ +Q GRV+ A+F +TVY PNSG LK
Sbjct: 59 SAVKKGYSGTSIITRIQPIDVTKDM-GIEEHDQEGRVLCAEFSDLYLVTVYTPNSGNDLK 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEERR 247
+ +R WD F YI+ +L ++I GDLN + IDLA P N K+AGYT +E
Sbjct: 118 RLSYRAQWDADFLSYIK-KLEEKKPVVICGDLNAAHRDIDLARPKPNYNKSAGYTQQEID 176
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
L+ G VD FR+++P E+ Y++WS+R AR N GWR+DY LVS +L I D
Sbjct: 177 GIDNLVAAGYVDTFRYVHP-EKVKYSWWSYR-AGARERNVGWRIDYFLVSPKLQGQIHDA 234
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
I +D+ GS HCPV ++LS+
Sbjct: 235 EIHNDIHGSDHCPVSVQLSI 254
>gi|385809097|ref|YP_005845493.1| exodeoxyribonuclease III [Ignavibacterium album JCM 16511]
gi|383801145|gb|AFH48225.1| Exodeoxyribonuclease III [Ignavibacterium album JCM 16511]
Length = 262
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 150/254 (59%), Gaps = 9/254 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNG+RA V K V+++L+ENPDI+ LQ+ + D++P+ S++ Y F+
Sbjct: 4 IRLYSWNVNGIRA-VHKKGFVDWVLKENPDILCLQETKAHPDQLPKEL-ISINGYQSFFS 61
Query: 132 GSD--KGQGGVGLLTKEKPLTVKYG--IPGVSNQRGRVITAKFKRFTFITVYVPNSGIKL 187
S KG GV + +K P+ VKYG IP ++ GR + +K F +Y PN +
Sbjct: 62 SSKVKKGYSGVAVYSKLNPVDVKYGFDIPRFDDE-GRTLILDYKEFILFNIYFPNGKMSD 120
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+ + +++ + F +Y + ++ II+ GD+N + IDLA P +N KT+G+ ER+
Sbjct: 121 ERLKYKLDFYDAFLEYAKKLIQQGRKIIVCGDVNTAHKEIDLARPKENEKTSGFLPIERQ 180
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
+ L G VD FR ++ D+ G YT+W + + AR N GWR+DY VSE NN+K+
Sbjct: 181 WIDKFLANGFVDTFR-MFNDQPGNYTWWDMQTR-ARERNVGWRIDYFFVSESFKNNLKNS 238
Query: 308 IIRSDVQGSTHCPV 321
I SDV GS HCP+
Sbjct: 239 FILSDVMGSDHCPI 252
>gi|380695720|ref|ZP_09860579.1| exodeoxyribonuclease III [Bacteroides faecis MAJ27]
Length = 254
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 149/256 (58%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++++ENPD++ LQ+ + Q D+ P ++L + +
Sbjct: 1 MKIITYNVNGLRAAVSK-GLPEWLVQENPDVLCLQETKLQPDQYPAEVFEALGYKSYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK++P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAILTKQEPDHVEYGM-GIEAYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ ++ N+I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 119 QAFKMVWLEDFQKYVTELRKTRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G +D+FR LYP+++ YT+WS+R S R NKGWR+DY + SE + +K I
Sbjct: 179 TRFLSAGFIDSFRLLYPEKQ-EYTWWSYRFNS-RAKNKGWRIDYCMTSEPVRPLLKSASI 236
Query: 310 RSDVQGSTHCPVVLRL 325
+ S HCP+ L +
Sbjct: 237 LNGAVHSDHCPMALEI 252
>gi|299146132|ref|ZP_07039200.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_23]
gi|298516623|gb|EFI40504.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_23]
Length = 253
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 149/256 (58%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +ENPDI+ LQ+ + Q D+ P ++L + +
Sbjct: 1 MKIITYNVNGLRAAVSK-GLPEWLAQENPDILCLQETKLQPDQYPGEVFEALGYKSYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK++P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAILTKQEPDHVEYGM-GMEAYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ +S N+I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 119 QAFKMVWLEDFQKYVMELQKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G VDAFR L P+++ YT+WS+R S R NKGWR+DY +VSE + +K I
Sbjct: 179 TRFLSAGYVDAFRTLCPEKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVSEPVRPLLKRAYI 236
Query: 310 RSDVQGSTHCPVVLRL 325
++ S HCP+ L +
Sbjct: 237 LNEAVHSDHCPMALEI 252
>gi|333381978|ref|ZP_08473656.1| exodeoxyribonuclease III [Dysgonomonas gadei ATCC BAA-286]
gi|332829539|gb|EGK02188.1| exodeoxyribonuclease III [Dysgonomonas gadei ATCC BAA-286]
Length = 254
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 155/257 (60%), Gaps = 4/257 (1%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ ++NVNG+RA V K E++ +E+PDI+ LQ+I+ E+++ +SL +++ F
Sbjct: 1 MKIISYNVNGIRAAVNK-GLYEWMEKESPDILCLQEIKAMEEQIDVLTIQSLGYHYYFHS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
KG GVG+LTK+KP VK G+ V ++ GRV+ A + T I VY+P+ +
Sbjct: 60 AEKKGYSGVGILTKKKPDFVKSGMDMPVYDREGRVLRADYGDMTVICVYIPSGTMGDIRQ 119
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D +M + F +I + I+I GD N+C + ID+++P+++ K +G+ EER+ F
Sbjct: 120 DVKMKFLADFTHFINELRKERPQILICGDYNICHKPIDISHPERHTKDSGFLPEERQWFD 179
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
E + TGL+D FR +Y + Y++WS+R AR N GWR+DYH++SE+ + I
Sbjct: 180 EYIATGLIDTFR-VYDESPDKYSWWSYR-AGARGKNLGWRIDYHIISEEARPRLNGAAIL 237
Query: 311 SDVQGSTHCPVVLRLSL 327
SD+ S HCP+V+ +
Sbjct: 238 SDIDFSDHCPIVVEMDF 254
>gi|452820422|gb|EME27464.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 307
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 104/284 (36%), Positives = 164/284 (57%), Gaps = 11/284 (3%)
Query: 51 KKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRC 110
K + D E +K T +K +WNVN L+ +++ V + +E+PD + LQ+ +
Sbjct: 27 KNCTQLDSITENSPKKDTETLLKFLSWNVNSLKRVLERKQLVNLVSQEDPDFICLQETKL 86
Query: 111 QEDEVPESFRKSLSHYHMFW--IGSDKGQGGVGLLTKEKPLTVKYGIPGV---SNQRGRV 165
ED+VP +F L Y F+ + +G G L +K P+ V GV N+ GR+
Sbjct: 87 TEDKVPGAFL--LPQYKKFFNCCETKRGYSGTALFSKMAPIAVLKDFEGVYSEHNKTGRL 144
Query: 166 ITAKFKRFTFITVYVPNSGIKLKAIDFRM-IWDQHFYDYIQSELRSNSNIIISGDLNVCL 224
I A+++ F +VYVPNSG KLK +++R+ WD F YI EL+ I++ GDLNV
Sbjct: 145 IVAEYENFYVASVYVPNSGDKLKNLEYRVHSWDPSFCSYI-CELQMKKPIVLLGDLNVAH 203
Query: 225 QSIDLANPDKNVKTAGYTVEERRNFRELLD-TGLVDAFRHLYPDEEGAYTYWSFRNKSAR 283
Q ID+ P++ AG+ ER NF + L+ T +VD+FR+LYP + AY++W ++ R
Sbjct: 204 QDIDVYAPERLGSKAGFVQSERNNFSKFLEETKMVDSFRYLYPHRKEAYSFWDYKT-GGR 262
Query: 284 LNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L N+GWR+DY L+S L +N+ D I ++GS HCP+ +++ +
Sbjct: 263 LRNQGWRIDYCLLSSSLVSNLVDAFILDKIEGSDHCPIGIQMRI 306
>gi|431796433|ref|YP_007223337.1| exodeoxyribonuclease III [Echinicola vietnamensis DSM 17526]
gi|430787198|gb|AGA77327.1| exodeoxyribonuclease III [Echinicola vietnamensis DSM 17526]
Length = 253
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 151/258 (58%), Gaps = 8/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+ + ++NVNG+RA ++K +++ + +PDI+ LQ+I+ E ++ S + L YH +W
Sbjct: 1 MNIVSYNVNGIRAAMRK-GFADWLAQTSPDIIGLQEIKATEAQIETSVFEDLG-YHCYWY 58
Query: 132 GS-DKGQGGVGLLTKEKPLTVKYGIPGVSN--QRGRVITAKFKRFTFITVYVPNSGIKLK 188
+ KG GV +L+KEKP + YG+ GVS+ GR+I A F F+FI+ Y P+
Sbjct: 59 PAVKKGYSGVAILSKEKPSEITYGM-GVSDYDDEGRMIRADFGEFSFISAYFPSGTTGGI 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
DF+ + Y Y Q ++S N+I+SGD N+C ++ID+ NP N T+G+ +ER
Sbjct: 118 RQDFKYAFLDDVYGYTQDLIKSRPNLILSGDYNICHKAIDIHNPIANKNTSGFLPDERAW 177
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+L G D+FR LY Y++W++R +AR NNKGWR+DYH+ S + +K
Sbjct: 178 MDKLTSNGFDDSFR-LYNQSPHQYSWWTYR-ANARANNKGWRIDYHMTSSAMNERVKGAS 235
Query: 309 IRSDVQGSTHCPVVLRLS 326
I D S HCPV++ +
Sbjct: 236 IMPDAIHSDHCPVLVEIG 253
>gi|51246268|ref|YP_066152.1| exodeoxyribonuclease (ExoA) [Desulfotalea psychrophila LSv54]
gi|50877305|emb|CAG37145.1| probable exodeoxyribonuclease (ExoA) [Desulfotalea psychrophila
LSv54]
Length = 480
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 102/257 (39%), Positives = 147/257 (57%), Gaps = 7/257 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
T + +WNVNG+RA V+K ++ + E NPD++ LQ+ + Q +++ ES K++ Y
Sbjct: 225 TPSYRYISWNVNGIRA-VEKKGFIDIVQELNPDVIGLQETKAQPEQLSESL-KNIPGYTS 282
Query: 129 FWIGSD-KGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIK 186
+W + KG GV +K +PL V YGI + GRVIT +F T+Y PNS +
Sbjct: 283 YWYSAQRKGYSGVAFYSKHEPLQVIYGIGAEEFDCEGRVITLEFADHYLATIYFPNSADQ 342
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
LK +D+++ +++ + Q +L +I+ GD NV + IDL NP NVK AG+T EER
Sbjct: 343 LKRLDYKLRFNRALLAFFQ-KLEKEKAVILCGDFNVAHKEIDLKNPKSNVKNAGFTPEER 401
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
E L+ G D FR D E Y++WS+R SAR N GWR+DY VSE I +
Sbjct: 402 AWMDEFLEAGYTDTFRLFNQDPEN-YSWWSYRF-SARSKNIGWRIDYFCVSENGQKRIVN 459
Query: 307 CIIRSDVQGSTHCPVVL 323
I +V GS HCPV+L
Sbjct: 460 AEILPEVMGSDHCPVLL 476
>gi|449135634|ref|ZP_21771081.1| exodeoxyribonuclease III [Rhodopirellula europaea 6C]
gi|448885688|gb|EMB16112.1| exodeoxyribonuclease III [Rhodopirellula europaea 6C]
Length = 256
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 149/256 (58%), Gaps = 5/256 (1%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA + K +++ E PD++ LQ+ + + ++V S+ L ++ ++
Sbjct: 5 LKLISWNVNGIRASMDK-GFRDFVESEQPDVLCLQETKAEPEQVDLSWADELGYHQVWNT 63
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
+ +G GV ++ KP V G+ + GRV+T F F + VY PNS L +
Sbjct: 64 ATKRGYSGVSTWSRVKPSKVTKGLNIEEHDNEGRVLTTTFDDFHLVNVYTPNSQRGLARL 123
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+RM WD+ F DY++ +L ++ GD+N + IDLANP N K AG++ +ER
Sbjct: 124 DYRMQWDEAFLDYVK-KLNRRKPVLFCGDVNCAHKEIDLANPKANRKNAGFSDQERAGLD 182
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+ + G +D+FR + D G Y++W++R+ AR N GWRLDY V+++ + + D IR
Sbjct: 183 AITEAGFIDSFRQFH-DGPGHYSWWTYRS-DARARNIGWRLDYFWVAKKFWDRVADAQIR 240
Query: 311 SDVQGSTHCPVVLRLS 326
++ GS HCPV L L+
Sbjct: 241 CEIHGSDHCPVELTLT 256
>gi|357420851|ref|YP_004928297.1| exodeoxyribonuclease III [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
gi|354803358|gb|AER40472.1| exodeoxyribonuclease III [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
Length = 254
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 158/258 (61%), Gaps = 9/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ ++N+NG+R+ +KK +I + NPDI+ LQ+I+ +++ + L +YH +W
Sbjct: 1 MKIVSYNINGIRSGIKK-GLFNWIEKSNPDILCLQEIKAFPEQIETNRIDDLGYYH-YWF 58
Query: 132 GSDK--GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKL 187
S K G GVG+L K+KP ++YGI G+ +Q GR++ FK+ + I++Y+P+
Sbjct: 59 PSTKRKGYSGVGILCKKKPDHIEYGI-GIDSIDQEGRILRLDFKKISVISLYIPSGKDMK 117
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
++F+ + HF+DY+Q R N+II GD N+C + ID+ +P +N +G+ ER+
Sbjct: 118 NRLNFKFYFMDHFFDYVQKMKREFPNLIICGDYNICHKKIDIHDPVRNRDISGFLPRERK 177
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
+ L+ G +D+FR+ Y E Y++WS+R +A+ NNKGWR+DY +VS L + +
Sbjct: 178 WMNDFLNLGFIDSFRN-YVKEARHYSWWSYR-YNAKKNNKGWRIDYAMVSHSLKKEMINA 235
Query: 308 IIRSDVQGSTHCPVVLRL 325
+ S++ S HCP VL +
Sbjct: 236 YLLSEISYSDHCPTVLEI 253
>gi|242054695|ref|XP_002456493.1| hypothetical protein SORBIDRAFT_03g037240 [Sorghum bicolor]
gi|241928468|gb|EES01613.1| hypothetical protein SORBIDRAFT_03g037240 [Sorghum bicolor]
Length = 511
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 106/269 (39%), Positives = 162/269 (60%), Gaps = 15/269 (5%)
Query: 69 TTKVKVSTWNVNGLRACVK-KNACVEYILE-ENPDIMALQQIRCQEDEVPESFRKSL--S 124
T +K+ +WNVNGL+A +K + V+ + + E+ D++ LQ+ + QE +V E + +L
Sbjct: 248 TRALKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKMQEKDV-EVIKDTLLDG 306
Query: 125 HYHMFWIGSDK--GQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYV 180
+ + F+ S G G ++++ KPL++KYG+ G+ + GRV+T +F F +T YV
Sbjct: 307 YTNSFFTCSVSKLGYSGTAIISRVKPLSIKYGL-GIPDHDTEGRVVTVEFDDFYLLTAYV 365
Query: 181 PNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTA 239
PNSG LK + +R+ WD +Y++ EL + +I++GDLN Q ID+ +P N K+A
Sbjct: 366 PNSGDGLKRLTYRVTEWDPSLGNYMK-ELEKSKPVILTGDLNCAHQEIDIHDPAGNRKSA 424
Query: 240 GYTVEERRNFR-ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSE 298
G+T EER +F L G VD FR +P AY+YW +R+ +AR NKGWRLDY LVSE
Sbjct: 425 GFTNEERESFETNFLSKGFVDTFRKQHPSVV-AYSYWGYRH-NARKTNKGWRLDYFLVSE 482
Query: 299 QLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+A + D I D+ S H P+ L L L
Sbjct: 483 SIAEKVHDSYILPDISASDHSPLGLVLKL 511
>gi|167762826|ref|ZP_02434953.1| hypothetical protein BACSTE_01184 [Bacteroides stercoris ATCC
43183]
gi|167699166|gb|EDS15745.1| exodeoxyribonuclease III [Bacteroides stercoris ATCC 43183]
Length = 266
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 149/259 (57%), Gaps = 6/259 (2%)
Query: 70 TKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMF 129
T++K+ T+NVNGLRA V K E++ +E PD++ LQ+ + Q ++ P +L + H
Sbjct: 11 TEMKIITYNVNGLRAAVSK-GLPEWLAKEQPDVLCLQETKLQPEQYPAEALDALGYRHYL 69
Query: 130 WIGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKL 187
KG GV +LTK +P V+YG+ G+ + GR + A + + ++VY P+
Sbjct: 70 HSARKKGYSGVAILTKREPDYVEYGM-GMEEYDSEGRFVRADYGDLSVVSVYHPSGTSGD 128
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+ F+M W +HF Y LR+ +++ GD N+C ++ID+ +P +N +G+ EER
Sbjct: 129 ERQAFKMEWLEHFRRYAVELLRTRPKLVLCGDYNICHEAIDIHDPVRNATNSGFLPEERE 188
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
L+ G +D FR L+PD YT+WS+R S R NKGWR+DY + SE + +K+
Sbjct: 189 WMTRFLNEGFIDTFRLLHPDSR-EYTWWSYRFNS-RAKNKGWRIDYCMASEAVRPMLKEA 246
Query: 308 IIRSDVQGSTHCPVVLRLS 326
I +D S HCP++L L+
Sbjct: 247 RILNDAVHSDHCPMMLELT 265
>gi|325281386|ref|YP_004253928.1| exodeoxyribonuclease III Xth [Odoribacter splanchnicus DSM 20712]
gi|324313195|gb|ADY33748.1| exodeoxyribonuclease III Xth [Odoribacter splanchnicus DSM 20712]
Length = 257
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 152/258 (58%), Gaps = 5/258 (1%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLR+ + K +++ EE PDI+ LQ+ + Q D++P ++L + F+
Sbjct: 2 IKIITYNVNGLRSALSK-GFTDWLAEELPDIVCLQETKAQPDQIPTLEFEALGYRSFFFS 60
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LT+ P ++YG+ G+ ++ GR + A + + ++VY P+ +
Sbjct: 61 AEKKGYSGVAILTRITPDHLEYGM-GMQEYDREGRFLRADYGDLSIVSVYHPSGTTGEER 119
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M W + F Y+ ++ +I+ GD N+C + ID+ +P +N ++G+ EER
Sbjct: 120 QAFKMKWLEDFRHYVMKLSKTRKKLILCGDYNICHRPIDIHDPVRNANSSGFLPEEREWM 179
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L++G D FR+ +P+E YT+WSFR +AR NNKGWR+DY +VS ++ +KD I
Sbjct: 180 SLFLESGFTDTFRYFHPEEPHQYTWWSFR-ANARNNNKGWRIDYCMVSPEVIPLLKDAYI 238
Query: 310 RSDVQGSTHCPVVLRLSL 327
V+ S HCP V+ L +
Sbjct: 239 LPQVKHSDHCPAVVELKV 256
>gi|347534242|ref|YP_004840912.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504298|gb|AEN98980.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 283
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 145/253 (57%), Gaps = 8/253 (3%)
Query: 76 TWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK 135
TWNVNG+RA +K N E+ N D ++Q+ R EV S Y+ +W +++
Sbjct: 32 TWNVNGIRAILKNN-FYEFFNAANADFFSVQETRVSPGEVKLDLP---SDYYQYWNDAER 87
Query: 136 -GQGGVGLLTKEKPLTVKYGIPGV-SNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFR 193
G G + TK +PL V G+ G + GR IT ++ F + VY P +G +L+ + F+
Sbjct: 88 PGYAGTAVFTKHQPLKVMLGLDGNDQDPEGRAITLEYPNFYLVNVYAPAAGEELQRLTFK 147
Query: 194 MIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELL 253
WDQ ++ +L++ +II+GDLN+ + ID+ P+++ AG+T ER+ +LL
Sbjct: 148 EEWDQKLITFV-DKLKATKPVIINGDLNIAHEPIDIYAPEEHRHAAGFTDAERQQMTQLL 206
Query: 254 DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDV 313
D+G D +R +PDE YT+WS+R+ AR +N GWRLDY ++S L ++K I V
Sbjct: 207 DSGFTDIYRATHPDEPNKYTWWSYRDH-ARRDNHGWRLDYFIISNNLVKDVKITTIMDTV 265
Query: 314 QGSTHCPVVLRLS 326
GS HCP+ L L+
Sbjct: 266 SGSDHCPLQLILN 278
>gi|153937900|ref|YP_001390827.1| exodeoxyribonuclease III [Clostridium botulinum F str. Langeland]
gi|168180137|ref|ZP_02614801.1| exodeoxyribonuclease III [Clostridium botulinum NCTC 2916]
gi|170757676|ref|YP_001781117.1| exodeoxyribonuclease III [Clostridium botulinum B1 str. Okra]
gi|226948816|ref|YP_002803907.1| exodeoxyribonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|384461879|ref|YP_005674474.1| exodeoxyribonuclease III [Clostridium botulinum F str. 230613]
gi|387817755|ref|YP_005678100.1| exodeoxyribonuclease III [Clostridium botulinum H04402 065]
gi|421833792|ref|ZP_16268989.1| exodeoxyribonuclease III [Clostridium botulinum CFSAN001627]
gi|429247526|ref|ZP_19210769.1| exodeoxyribonuclease III [Clostridium botulinum CFSAN001628]
gi|152933796|gb|ABS39294.1| exodeoxyribonuclease III [Clostridium botulinum F str. Langeland]
gi|169122888|gb|ACA46724.1| exodeoxyribonuclease III [Clostridium botulinum B1 str. Okra]
gi|182668909|gb|EDT80885.1| exodeoxyribonuclease III [Clostridium botulinum NCTC 2916]
gi|226843845|gb|ACO86511.1| exodeoxyribonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|295318896|gb|ADF99273.1| exodeoxyribonuclease III [Clostridium botulinum F str. 230613]
gi|322805797|emb|CBZ03362.1| exodeoxyribonuclease III [Clostridium botulinum H04402 065]
gi|409744929|gb|EKN43319.1| exodeoxyribonuclease III [Clostridium botulinum CFSAN001627]
gi|428755480|gb|EKX78108.1| exodeoxyribonuclease III [Clostridium botulinum CFSAN001628]
Length = 253
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 153/256 (59%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNGLRA KKN +E+I EE+PDI+ +Q+ + Q +++ ++ + +Y F
Sbjct: 1 MRIYSWNVNGLRAVAKKNF-IEWIGEESPDILCIQETKLQGNQLEDNIKNIDGYYSYFSF 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK KP++VK+ I G+ + GR++ +FK FT + +Y PN +
Sbjct: 60 AVKKGYSGVATYTKVKPISVKHSI-GIEKFDSEGRILITEFKDFTLLNIYFPNGQRDEER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ +++ + + ++Y ++ ++I GD N IDL NP N KT+G+ ER
Sbjct: 119 LQYKLDFYEALFNYCDELVKEGKKLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
++++ G D FR++ PD + Y++WS+R K AR N GWR+DYH VS L + +++ I
Sbjct: 179 DKIIERGYTDTFRNMNPD-KIKYSWWSYRFK-ARERNAGWRIDYHFVSNNLLDRVENTEI 236
Query: 310 RSDVQGSTHCPVVLRL 325
++V GS HCPV+L L
Sbjct: 237 LNEVYGSDHCPVMLEL 252
>gi|342217311|ref|ZP_08709958.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 375 str.
F0436]
gi|341588201|gb|EGS31601.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 375 str.
F0436]
Length = 279
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 155/281 (55%), Gaps = 31/281 (11%)
Query: 72 VKVSTWNVNGLRACVKKNAC--------VEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
+K +WN++ L A + ++ + + EENPD++A+Q+ + E + ++L
Sbjct: 1 MKFISWNIDSLNAALTSDSARAQLSRGVLRRLQEENPDVIAIQETKLPEKGPSKKHIQAL 60
Query: 124 SH----YHMFWIGS----DKGQGGVGLLTKEKPLTVKY-----GIPGVSNQRGRVITAKF 170
Y+ W S KG G L K K L + G P + GR+IT +F
Sbjct: 61 EEWFPDYNYVWTSSCPPARKGYAGTMTLYK-KTLKAEVTFPEIGAPTTMDHEGRIITLEF 119
Query: 171 KRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLA 230
RF F VY PN+G L + R IWD+ F DY++ L +I +GD NV + IDL
Sbjct: 120 DRFYFTQVYTPNAGNGLVRLGDRQIWDEKFADYLEG-LDQEKPVIATGDFNVAHKEIDLK 178
Query: 231 NPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWR 290
NPD N ++ G+T EER F +LLD G VD+FRH++ D EG Y++W+ R K++++NN GWR
Sbjct: 179 NPDANRRSPGFTDEERLGFSKLLDRGFVDSFRHIHGDVEGVYSWWAQRVKTSKINNSGWR 238
Query: 291 LDYHLVSEQLANNIKDCIIRSDVQGST----HCPVVLRLSL 327
+DY LVS++ IKD +I S++ S H P++LR L
Sbjct: 239 IDYFLVSDR----IKDLVIESNMIDSGERQDHTPLILRFDL 275
>gi|340617816|ref|YP_004736269.1| exodeoxyribonuclease III [Zobellia galactanivorans]
gi|339732613|emb|CAZ95881.1| Exodeoxyribonuclease III [Zobellia galactanivorans]
Length = 256
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/260 (39%), Positives = 152/260 (58%), Gaps = 8/260 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+RA VKK E + + D+ +Q+ + Q+D+V E+ +S Y +F
Sbjct: 1 MKLVSWNVNGIRASVKK-GFEEVVSSFDADVFCVQETKAQDDQVKEAL-AGISDYELFCN 58
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
++K G G +L+K+KPLT + + GR+ +++ F + VYVPNSG LK
Sbjct: 59 SAEKKGYSGTAILSKKKPLTFTVDMGKEEHDTEGRITHVEYEEFHLVNVYVPNSGSGLKR 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEERRN 248
+D+R IWD+ F Y++ +L + +II+GD NV + DLANP N KT+G+T E
Sbjct: 119 LDYRSIWDKDFTAYLK-KLSESKPLIITGDFNVAHTANDLANPKSNYNKTSGFTQVEIDG 177
Query: 249 FRELL-DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
F +L + LVD+FR L+P YT+WS R AR N GWR+DY LVSE + ++
Sbjct: 178 FDAILKELNLVDSFRTLHPTTFHKYTFWSMRG-GARGRNVGWRIDYFLVSESIWPKVQSA 236
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
I V GS HCP+ L +S
Sbjct: 237 EIHDQVMGSDHCPISLEISF 256
>gi|338175515|ref|YP_004652325.1| exodeoxyribonuclease [Parachlamydia acanthamoebae UV-7]
gi|336479873|emb|CCB86471.1| exodeoxyribonuclease [Parachlamydia acanthamoebae UV-7]
Length = 251
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 152/259 (58%), Gaps = 11/259 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNG+R+ +KK +++I + +PDI+ LQ+ + ++ V + +LS YH +W
Sbjct: 1 MKIISWNVNGIRSILKK-GFLDFINKYDPDILCLQETKASQENV----QLNLSQYHQYWN 55
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+ K G G + TKEKPL V+ GI + ++ GR IT ++ F + VYVPNS L
Sbjct: 56 SAQKKGYSGTCVFTKEKPLNVENGILLDLHDKEGRTITLEYPTFFLVNVYVPNSKRDLSR 115
Query: 190 IDFRM-IWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++R WD F +Y+++ R +I GDLNV DLA P N+ G+T EER
Sbjct: 116 LEYRCKQWDVDFLNYLKNIERKKP-VIFCGDLNVAHTENDLAFPKANINNHGFTAEERAG 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F ++++G VD FR + G YT+WS N+ R + GWR+DY L+S L + IK
Sbjct: 175 FDHIVESGFVDIFRE-FEKSSGHYTWWSQFNR-CRERDIGWRIDYFLISPSLRSRIKKAS 232
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I DV GS HCP+ L LSL
Sbjct: 233 ILKDVMGSDHCPITLELSL 251
>gi|341820798|emb|CCC57104.1| exodeoxyribonuclease III [Weissella thailandensis fsh4-2]
Length = 289
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 148/275 (53%), Gaps = 22/275 (8%)
Query: 71 KVKVSTWNVNGLRACVKKNAC--------VEYILEENPDIMALQQIRC--------QEDE 114
K+ +WN++ + A V+ + ++ I E PD++A+Q+ + QE
Sbjct: 13 KMNFISWNIDSINAAVEHKSVRGEMTWEVLQNIALERPDVLAIQETKLKATGLTKKQETA 72
Query: 115 VPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLTVKY---GIPGVSNQRGRVITAKFK 171
+ E F + M G G +LT+ +PL+V G PG + GRVIT +F+
Sbjct: 73 LDELFPNYYRYLRM--STGRSGYSGTMMLTRHEPLSVDMPVIGAPGEMDIEGRVITLEFE 130
Query: 172 RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLAN 231
TVY PNSG L + R WD + YIQ+ L + +I SGD NV Q IDL N
Sbjct: 131 NNYVSTVYTPNSGSGLARLGDRQAWDDAYRAYIQT-LDAKKPVIFSGDFNVAHQEIDLKN 189
Query: 232 PDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRL 291
P N KTAG+T EER +F LLD G D FR+L+PD+ G YT+W+ +K++++NN GWR+
Sbjct: 190 PKSNHKTAGFTDEERTHFSRLLDAGFTDTFRYLHPDQTGVYTWWAQISKTSKINNSGWRI 249
Query: 292 DYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLS 326
DY+L S +LA+ I + + H P+ L ++
Sbjct: 250 DYYLTSNRLADQISELSVIDTGARQDHAPIKLEMA 284
>gi|333379414|ref|ZP_08471137.1| exodeoxyribonuclease III [Dysgonomonas mossii DSM 22836]
gi|332885280|gb|EGK05531.1| exodeoxyribonuclease III [Dysgonomonas mossii DSM 22836]
Length = 254
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 156/258 (60%), Gaps = 6/258 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+KV ++NVNG+RA V K +++ +E+PDI+ LQ+I+ ED++ +SL + + F
Sbjct: 1 MKVISYNVNGIRAAVNK-GLYQWLEQESPDILCLQEIKAMEDQIDVLTIQSLGYNYYFHP 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVSN--QRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GVG+LTK P VK G+ G+ + + GRV+ A + T I VY+P+ +
Sbjct: 60 AEKKGYSGVGILTKRTPDLVKIGM-GIPDYDREGRVLRADYGDVTVICVYIPSGTMGDIR 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
D +M + F +I + + +II GD N+C + ID+ +P+++ K++G+ EER+ F
Sbjct: 119 QDIKMKFLADFTHFINNLRKERPELIICGDYNICHKPIDINHPERHTKSSGFLPEERQWF 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
E +DTGL+D FR +Y Y++WS+R AR N GWR+DYH+++E+ + + I
Sbjct: 179 DEFIDTGLIDTFR-VYDQSPEKYSWWSYR-AGARGKNLGWRIDYHIITEEARPRLNNAAI 236
Query: 310 RSDVQGSTHCPVVLRLSL 327
S++ S HCPVV+ +S
Sbjct: 237 LSEIYFSDHCPVVVEMSF 254
>gi|237719516|ref|ZP_04549997.1| exodeoxyribonuclease [Bacteroides sp. 2_2_4]
gi|293370159|ref|ZP_06616719.1| exodeoxyribonuclease III [Bacteroides ovatus SD CMC 3f]
gi|336413720|ref|ZP_08594069.1| exodeoxyribonuclease III [Bacteroides ovatus 3_8_47FAA]
gi|383111647|ref|ZP_09932456.1| exodeoxyribonuclease III (xth) [Bacteroides sp. D2]
gi|423286352|ref|ZP_17265203.1| exodeoxyribonuclease III (xth) [Bacteroides ovatus CL02T12C04]
gi|423296139|ref|ZP_17274224.1| exodeoxyribonuclease III (xth) [Bacteroides ovatus CL03T12C18]
gi|229451376|gb|EEO57167.1| exodeoxyribonuclease [Bacteroides sp. 2_2_4]
gi|292634656|gb|EFF53185.1| exodeoxyribonuclease III [Bacteroides ovatus SD CMC 3f]
gi|313696639|gb|EFS33474.1| exodeoxyribonuclease III (xth) [Bacteroides sp. D2]
gi|335934737|gb|EGM96720.1| exodeoxyribonuclease III [Bacteroides ovatus 3_8_47FAA]
gi|392670749|gb|EIY64227.1| exodeoxyribonuclease III (xth) [Bacteroides ovatus CL03T12C18]
gi|392675039|gb|EIY68481.1| exodeoxyribonuclease III (xth) [Bacteroides ovatus CL02T12C04]
Length = 253
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 149/256 (58%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +ENPDI+ LQ+ + Q D+ P ++L + +
Sbjct: 1 MKIITYNVNGLRAAVSK-GLPEWLAQENPDILCLQETKLQPDQYPGEVFEALGYKSYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK++P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAILTKQEPDHVEYGM-GMEAYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ +S N+I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 119 QAFKMVWLEDFQKYVMELQKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G VD+FR L P+++ YT+WS+R S R NKGWR+DY +VSE + +K I
Sbjct: 179 TRFLSAGYVDSFRTLCPEKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVSEPVRPLLKRAYI 236
Query: 310 RSDVQGSTHCPVVLRL 325
++ S HCP+ L +
Sbjct: 237 LNEAVHSDHCPMALEI 252
>gi|23097966|ref|NP_691432.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
gi|22776190|dbj|BAC12467.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
Length = 269
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 141/250 (56%), Gaps = 9/250 (3%)
Query: 76 TWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSD 134
+WNVNG+RACV+K +++ E D +Q+ + QE ++ + L Y+ +W
Sbjct: 5 SWNVNGIRACVRK-GFLDFFQEMGADFFCIQESKLQEGQI----QLDLDGYYQYWNYAER 59
Query: 135 KGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRFTFITVYVPNSGIKLKAIDFR 193
KG G + TK +PL V YGI + + GR+IT +++ F + VY PNS L ++ R
Sbjct: 60 KGYSGTAIFTKWEPLHVFYGIDSNNYEPEGRIITLEYESFYLVNVYTPNSKRDLTRLEDR 119
Query: 194 MIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELL 253
+ W+ +DY+Q +L ++ GDLNV IDL N N +G+T EER LL
Sbjct: 120 LEWEDRLFDYLQ-KLNKKKPLVYCGDLNVAHHEIDLRNDKTNHGNSGFTKEERSKMSRLL 178
Query: 254 DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDV 313
D G VD RH +P+ + +T+WS+ K+ R N GWR+DY +VSEQL +K + S V
Sbjct: 179 DAGFVDTLRHFHPEADDIFTWWSYM-KTIRERNIGWRIDYFIVSEQLIPALKKSEVHSSV 237
Query: 314 QGSTHCPVVL 323
GS HCP+ L
Sbjct: 238 LGSDHCPIGL 247
>gi|420535388|ref|ZP_15033733.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|420539073|ref|ZP_15037392.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
gi|393139673|gb|EJC40047.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|393146758|gb|EJC47083.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
Length = 236
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 134/229 (58%), Gaps = 8/229 (3%)
Query: 99 NPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSDKGQGGVGLLTKEKPLTVKYGIP- 156
N D+ +Q+ + Q+++ F+ Y FW KG GV TK++PL+V YGI
Sbjct: 13 NADVFCIQESKMQQEQNTFEFKG----YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDI 68
Query: 157 GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIII 216
++ GRV+T +F+ F + VY PNS L + +RM W+ F ++++ L +I+
Sbjct: 69 KEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKA-LELKKPVIV 127
Query: 217 SGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWS 276
GDLNV IDL NP N K AG++ EER F ELL+ G +D FR+ YP++E AYT+WS
Sbjct: 128 CGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYPNKEKAYTWWS 187
Query: 277 FRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRL 325
+ + AR + GWR+DY L S L +KD +I D+ GS HCPV L L
Sbjct: 188 YM-QQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 235
>gi|365904744|ref|ZP_09442503.1| Exodeoxyribonuclease III [Lactobacillus versmoldensis KCTC 3814]
Length = 253
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 154/258 (59%), Gaps = 10/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA VK + + + + DI ++Q+ + QE ++ L YH ++
Sbjct: 1 MKLISWNVNGLRAVVKHD-FKDTFEKLDADIFSIQETKLQEGQID----LDLPGYHQYFN 55
Query: 132 GSD-KGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
+D KG G + +K++PL ++ G+ N GR IT ++ F I Y PNS KLK
Sbjct: 56 YADRKGYSGTAVFSKQEPLNIETGLDDDEFNHEGRTITLEYPDFYLINSYTPNSQPKLKR 115
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+DFRM ++ + ++Q+ L +I+ GDLNV ID+ N N K G++ EER F
Sbjct: 116 LDFRMGYNDAMWKHMQT-LSKKKPVILCGDLNVAHNEIDIKNDKTNHKNPGFSDEERNKF 174
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
ELLD+G D FR+L+P EE Y++WS+R +AR NN GWR+DY ++S + I++ I
Sbjct: 175 SELLDSGFTDTFRYLHP-EEVKYSWWSYR-FNARKNNAGWRIDYFVISNNGQDLIQNADI 232
Query: 310 RSDVQGSTHCPVVLRLSL 327
+DV GS HCP+ L L++
Sbjct: 233 LNDVYGSDHCPIQLDLNI 250
>gi|255024226|ref|ZP_05296212.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-208]
Length = 216
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 137/224 (61%), Gaps = 11/224 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA VKK +EY E + DI LQ+ + QE ++ L Y +W
Sbjct: 1 MKLISWNVNGLRAAVKK-GFLEYFEEVDADIFCLQETKLQEGQI----ELDLPAYKDYWN 55
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + TK +PL+V+YG+ GV + GRVIT +F+ F +TVY PNS +LK
Sbjct: 56 YAVKKGYSGTAIFTKVEPLSVQYGL-GVPEHDTEGRVITLEFEEFFMVTVYTPNSQAELK 114
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+RM ++ +Y+++ L +++ GDLNV + IDL NP N K AG++ EER
Sbjct: 115 RLDYRMTFEDAILEYVKN-LDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAK 173
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLD 292
F LD G +D+FR+ YPD AY++WS+R +AR N GWR+D
Sbjct: 174 FSAFLDAGFIDSFRYFYPDLTDAYSWWSYR-MNARARNTGWRID 216
>gi|241895249|ref|ZP_04782545.1| exodeoxyribonuclease III [Weissella paramesenteroides ATCC 33313]
gi|241871555|gb|EER75306.1| exodeoxyribonuclease III [Weissella paramesenteroides ATCC 33313]
Length = 289
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 151/275 (54%), Gaps = 22/275 (8%)
Query: 71 KVKVSTWNVNGLRACVKKNAC--------VEYILEENPDIMALQQIRC--------QEDE 114
K+K +WN++ + A V+ + ++ I E PD++A+Q+ + QE
Sbjct: 13 KMKFISWNIDSINAAVEHKSVRGVMTWEVLQQIALEKPDVLAIQETKLKATGLTKKQETA 72
Query: 115 VPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLTV---KYGIPGVSNQRGRVITAKFK 171
+ E F + M G G +LT+ +P++V + G PG + GR+IT +F+
Sbjct: 73 LDELFPNYYRYLRM--STGRSGYSGTMMLTRHEPISVTMPEIGAPGEMDIEGRIITLEFE 130
Query: 172 RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLAN 231
TVY PNSG L ++ R WD + Y+Q+ L + +I SGD NV Q IDL N
Sbjct: 131 NNYVSTVYTPNSGSGLARLEDRQAWDDAYRAYVQT-LDATKPVIFSGDFNVAHQEIDLKN 189
Query: 232 PDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRL 291
P N K AG+T EER +F +LLD G D FR+L+PD+ G YT+W+ +K++++NN GWR+
Sbjct: 190 PKSNHKKAGFTNEEREHFSQLLDAGFTDIFRYLHPDQAGVYTWWAQISKTSKINNSGWRI 249
Query: 292 DYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLS 326
DY+L S +LA+ + + + H P+ L ++
Sbjct: 250 DYYLTSNRLADQVSELSVIDTGARQDHAPIKLEMT 284
>gi|420446253|ref|ZP_14945154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
gi|393059442|gb|EJB60322.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
Length = 236
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 135/229 (58%), Gaps = 8/229 (3%)
Query: 99 NPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSDKGQGGVGLLTKEKPLTVKYGIP- 156
+ D+ +Q+ + Q+++ F+ Y FW KG GV TK++PL+V YGI
Sbjct: 13 DADVFCIQESKMQQEQNTFEFK----GYFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDI 68
Query: 157 GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIII 216
++ GRVIT +F+ F + VY PNS L + +RM W+ F ++++ L +I+
Sbjct: 69 KEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-LELKKPVIV 127
Query: 217 SGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWS 276
GDLNV IDL NP N K AG++ EER+ F ELL+ G +D FR+ YP++E AYT+WS
Sbjct: 128 CGDLNVAHNEIDLENPKTNRKNAGFSDEERKKFSELLNAGFIDTFRYFYPNKEKAYTWWS 187
Query: 277 FRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRL 325
+ + AR + GWR+DY L S L +KD +I D+ GS HCPV L L
Sbjct: 188 YM-QQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 235
>gi|333986432|ref|YP_004519039.1| exodeoxyribonuclease III [Methanobacterium sp. SWAN-1]
gi|333824576|gb|AEG17238.1| exodeoxyribonuclease III [Methanobacterium sp. SWAN-1]
Length = 259
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/260 (38%), Positives = 144/260 (55%), Gaps = 8/260 (3%)
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
K+++ +WNVNG+RA V K E+ E PDI+ +Q+ + +VP R+ YH +
Sbjct: 3 KIRILSWNVNGIRA-VHKKGFGEWFKTEQPDILCVQETKAVRKQVPRDIRE-FEGYHTYL 60
Query: 131 IGSD-KGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKL 187
+D KG GV L T+ KP V+YG G+ + GR + A + F +Y PN +
Sbjct: 61 SEADRKGYSGVALYTRIKPEKVEYGF-GIDKFDLEGRTLIADYGDFVLFNIYFPNGKMSP 119
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
+ + ++M + F +Y NI++ GD+N + IDLA P +N K +G+ EER
Sbjct: 120 ERLQYKMDFYDAFMEYADKLKDEGKNIVVCGDVNTAHKEIDLARPKENEKISGFLPEERA 179
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
E L+ G VD FR + EEG YT+WS+R + AR N GWRLDY V+E+ N+IK
Sbjct: 180 WIDEFLNHGYVDTFRE-FNQEEGQYTWWSYRTR-ARDRNVGWRLDYFFVNEEFMNHIKSS 237
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
I DV GS HCPV + + L
Sbjct: 238 FILKDVMGSDHCPVGIEVVL 257
>gi|257066091|ref|YP_003152347.1| exodeoxyribonuclease III Xth [Anaerococcus prevotii DSM 20548]
gi|256797971|gb|ACV28626.1| exodeoxyribonuclease III Xth [Anaerococcus prevotii DSM 20548]
Length = 274
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 152/275 (55%), Gaps = 23/275 (8%)
Query: 72 VKVSTWNVNGLRACVKKNA--------CVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
+K +WN++ L A + ++ + I ENPD++ALQ+ + + + + L
Sbjct: 1 MKFISWNIDSLNAALTSDSKRAVMSRDVLLTIKNENPDVIALQETKLPANGPSKKHVEKL 60
Query: 124 SH----YHMFWI----GSDKGQGGVGLLTKEKPLTVK-----YGIPGVSNQRGRVITAKF 170
S Y WI G+ K G L K K L VK G P + GR++T +F
Sbjct: 61 SEFFPDYDYVWISSRPGARKSYAGTMTLYK-KGLDVKESFPEIGAPDTMDLEGRILTLEF 119
Query: 171 KRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLA 230
+ F F VY PN+G +LK + R WD+ + DY+ +EL N +I +GD NV + IDLA
Sbjct: 120 EDFYFTQVYTPNAGGELKRLPLREEWDKLYADYL-AELDKNKPVIATGDFNVAHEEIDLA 178
Query: 231 NPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWR 290
+P+ N +AG+T EERR F LL+ G D FRHL + EGAYT+W+ R K++++NN GWR
Sbjct: 179 HPENNHMSAGFTDEERRGFTNLLNRGFTDTFRHLNKNLEGAYTWWAQRVKTSKINNSGWR 238
Query: 291 LDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRL 325
+DY LVS++L ++ D I H P++L +
Sbjct: 239 IDYFLVSDRLMEDVIDSTIIDSGDRQDHTPIMLEI 273
>gi|330506670|ref|YP_004383098.1| exodeoxyribonuclease III [Methanosaeta concilii GP6]
gi|328927478|gb|AEB67280.1| exodeoxyribonuclease III [Methanosaeta concilii GP6]
Length = 257
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 148/258 (57%), Gaps = 6/258 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+++ +WNVNGLRA KK V+++L++ PD++ LQ+I+ ED++P+ + + F
Sbjct: 4 MRILSWNVNGLRAIYKK-GFVDWLLKDRPDVLCLQEIKATEDQIPKELKGLPGYISFFSP 62
Query: 132 GSDKGQGGVGLLTKEKPLTVKY--GIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
G+ KG+ GV L TK K L+++Y G+PG +++ R I A + F VY PN +
Sbjct: 63 GARKGRDGVALFTKIKTLSLEYSLGLPGFDDEQ-RAIVADYGDFLLFDVYFPNGKASKER 121
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+ ++M + F D + + +I+I GD+N + IDLA P N K +G+ EER
Sbjct: 122 LSYKMRFYDLFLDLMDRLVAEGRDIVICGDVNTAHKEIDLARPKPNEKISGFLPEERAWI 181
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L++ G +D FR +P+ E Y++W + + AR N GWR+DY VS + + +K I
Sbjct: 182 DRLIEHGFLDTFRLFHPEGE-KYSFWDMKTR-ARERNVGWRIDYFFVSLGMRDRVKSAFI 239
Query: 310 RSDVQGSTHCPVVLRLSL 327
DV GS HCPV + + L
Sbjct: 240 LDDVYGSDHCPVGIEIEL 257
>gi|317476209|ref|ZP_07935460.1| exodeoxyribonuclease III [Bacteroides eggerthii 1_2_48FAA]
gi|316907620|gb|EFV29323.1| exodeoxyribonuclease III [Bacteroides eggerthii 1_2_48FAA]
Length = 254
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 150/257 (58%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ E PD++ LQ+ + Q ++ P +L + H +
Sbjct: 1 MKIITYNVNGLRAAVTK-GLPEWLANEQPDVLCLQETKLQPEQYPAEALDALGYKHYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK +P V+YG+ G+ + GR + A + + ++VY P+ +
Sbjct: 60 ARKKGYSGVAILTKREPDHVEYGM-GMEEYDSEGRFMRADYGDLSIVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ R+ +I+ GD N+C ++ID+ +P +N +G+ EER
Sbjct: 119 QAFKMVWLEKFRQYVVELQRTRPKLILCGDYNICHEAIDIHDPVRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L+ G +D FR L+PD++ YT+WS+R S R NKGWR+DY +V+E + +KD I
Sbjct: 179 TRFLNEGFIDTFRLLHPDKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVNESVRPMLKDARI 236
Query: 310 RSDVQGSTHCPVVLRLS 326
+D S HCP++L ++
Sbjct: 237 LNDAVHSDHCPMMLEIA 253
>gi|329964785|ref|ZP_08301808.1| exodeoxyribonuclease III [Bacteroides fluxus YIT 12057]
gi|328524636|gb|EGF51699.1| exodeoxyribonuclease III [Bacteroides fluxus YIT 12057]
Length = 254
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 150/257 (58%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +E PD++ LQ+ + Q ++ P SL + H +
Sbjct: 1 MKIITYNVNGLRAAVTK-GLPEWLAQEQPDVLCLQETKLQPEQYPADALDSLGYRHYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LT+ +P V+YG+ G+ + GR I A + + ++VY P+ +
Sbjct: 60 AQKKGYSGVAILTRREPDHVEYGM-GIEEYDNEGRFIRADYGDLSVVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F +Y+ R+ +I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 119 QAFKMVWLEKFQEYVLELQRTRPKLILCGDYNICHEPIDIHDPIRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L+ G +D+FR L+PD++ YT+WS+R S R NKGWR+DY +VSE + +K+ I
Sbjct: 179 TRFLNAGFIDSFRLLHPDKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVSEPVRPMLKEAQI 236
Query: 310 RSDVQGSTHCPVVLRLS 326
+ S HCP+ L ++
Sbjct: 237 LNGAVHSDHCPMSLEIT 253
>gi|218130897|ref|ZP_03459701.1| hypothetical protein BACEGG_02492 [Bacteroides eggerthii DSM 20697]
gi|217987241|gb|EEC53572.1| exodeoxyribonuclease III [Bacteroides eggerthii DSM 20697]
Length = 254
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 150/257 (58%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ E PD++ LQ+ + Q ++ P +L + H +
Sbjct: 1 MKIITYNVNGLRAAVTK-GLPEWLANEQPDVLCLQETKLQPEQYPAEALDALGYKHYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK +P V+YG+ G+ + GR + A + + ++VY P+ +
Sbjct: 60 ARKKGYSGVAILTKREPDHVEYGM-GMEEYDSEGRFMRADYGDLSIVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ R+ +I+ GD N+C ++ID+ +P +N +G+ EER
Sbjct: 119 QAFKMVWLEKFRQYVVELQRTRPKLILCGDYNICHEAIDIHDPVRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L+ G +D FR L+PD++ YT+WS+R S R NKGWR+DY +V+E + +KD I
Sbjct: 179 TRFLNEGFIDTFRLLHPDKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVNEPVRPMLKDARI 236
Query: 310 RSDVQGSTHCPVVLRLS 326
+D S HCP++L ++
Sbjct: 237 LNDAVHSDHCPMMLEIA 253
>gi|294806497|ref|ZP_06765338.1| exodeoxyribonuclease III [Bacteroides xylanisolvens SD CC 1b]
gi|294446360|gb|EFG14986.1| exodeoxyribonuclease III [Bacteroides xylanisolvens SD CC 1b]
Length = 253
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 148/256 (57%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +ENPDI+ LQ+ + Q D+ P ++L + +
Sbjct: 1 MKIITYNVNGLRAAVSK-GLPEWLAQENPDILCLQETKLQPDQYPGEVFEALGYKSYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK +P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAILTKREPDHVEYGM-GMEAYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ +S N+I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 119 QAFKMVWLEDFQKYVMELQKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G VD+FR L P+++ YT+WS+R S R NKGWR+DY +VSE + +K I
Sbjct: 179 TRFLSAGYVDSFRTLCPEKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVSEPVRPLLKRAYI 236
Query: 310 RSDVQGSTHCPVVLRL 325
++ S HCP+ L +
Sbjct: 237 LNEAVHSDHCPMALEI 252
>gi|420491640|ref|ZP_14990218.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
gi|393104853|gb|EJC05407.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
Length = 236
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 134/229 (58%), Gaps = 8/229 (3%)
Query: 99 NPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSDKGQGGVGLLTKEKPLTVKYGIPG 157
+ D+ +Q+ + Q+++ F+ Y FW KG GV TK++PL+V YGI
Sbjct: 13 DADVFCIQESKMQQEQNTFEFKG----YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDM 68
Query: 158 VSNQR-GRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIII 216
+ + GRVIT +F+ F + VY PNS L + +RM W+ F ++++ L +I+
Sbjct: 69 EEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-LELKKPVIV 127
Query: 217 SGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWS 276
GDLNV IDL NP N K AG++ EER F ELL+ G +D FR+ YP++E AYT+WS
Sbjct: 128 CGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYPNKEKAYTWWS 187
Query: 277 FRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRL 325
+ + AR + GWR+DY L S L +KD +I D+ GS HCPV L L
Sbjct: 188 YM-QQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 235
>gi|262406425|ref|ZP_06082974.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_22]
gi|294643303|ref|ZP_06721129.1| exodeoxyribonuclease III [Bacteroides ovatus SD CC 2a]
gi|336405285|ref|ZP_08585965.1| exodeoxyribonuclease III [Bacteroides sp. 1_1_30]
gi|345509975|ref|ZP_08789553.1| exodeoxyribonuclease III [Bacteroides sp. D1]
gi|423213837|ref|ZP_17200366.1| exodeoxyribonuclease III (xth) [Bacteroides xylanisolvens
CL03T12C04]
gi|229445328|gb|EEO51119.1| exodeoxyribonuclease III [Bacteroides sp. D1]
gi|262355128|gb|EEZ04219.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_22]
gi|292641426|gb|EFF59618.1| exodeoxyribonuclease III [Bacteroides ovatus SD CC 2a]
gi|295083963|emb|CBK65486.1| exodeoxyribonuclease III [Bacteroides xylanisolvens XB1A]
gi|335938097|gb|EGM99988.1| exodeoxyribonuclease III [Bacteroides sp. 1_1_30]
gi|392693494|gb|EIY86726.1| exodeoxyribonuclease III (xth) [Bacteroides xylanisolvens
CL03T12C04]
Length = 254
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 148/256 (57%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +ENPDI+ LQ+ + Q D+ P ++L + +
Sbjct: 2 MKIITYNVNGLRAAVSK-GLPEWLAQENPDILCLQETKLQPDQYPGEVFEALGYKSYLYS 60
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK +P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 61 AQKKGYSGVAILTKREPDHVEYGM-GMEAYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 119
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ +S N+I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 120 QAFKMVWLEDFQKYVMELQKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWM 179
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G VD+FR L P+++ YT+WS+R S R NKGWR+DY +VSE + +K I
Sbjct: 180 TRFLSAGYVDSFRTLCPEKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVSEPVRPLLKRAYI 237
Query: 310 RSDVQGSTHCPVVLRL 325
++ S HCP+ L +
Sbjct: 238 LNEAVHSDHCPMALEI 253
>gi|376316635|emb|CCG00021.1| exodeoxyribonuclease III Xth [uncultured Flavobacteriia bacterium]
Length = 253
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 157/257 (61%), Gaps = 8/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ ++NVNG+RA +KK ++++ NPD++ LQ+I+ QED++ S ++ +++ +W
Sbjct: 1 MKIISYNVNGIRAALKK-GFIDWLKSANPDVICLQEIKAQEDQLDLSVFENAGYHYSYWF 59
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITVYVPNSGIKLK 188
+ K G GV +L+K++P V YG G+ + GR I F + +++Y+P SG L
Sbjct: 60 SAQKKGYSGVAILSKKEPTNVVYG-TGIESMDFEGRNIRVDFDGVSVMSLYLP-SGTNLA 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
++ ++ + F DYI + + N+II GD N+C ++ID+ +P +N +G+ EER
Sbjct: 118 RLEHKLEYMDLFQDYINTLKKEVPNLIICGDYNICHEAIDIHDPVRNKNISGFLPEERAW 177
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+ L+ G VDAFR + E Y++WS+R S R NNKGWRLDY LV++ L +K +
Sbjct: 178 MSQFLENGFVDAFRE-FNSEAHNYSWWSYRANS-RTNNKGWRLDYTLVTQSLQEKLKRAV 235
Query: 309 IRSDVQGSTHCPVVLRL 325
I S+ S HCPV++ L
Sbjct: 236 ILSEAVHSDHCPVLVEL 252
>gi|373109400|ref|ZP_09523679.1| exodeoxyribonuclease III (xth) [Myroides odoratimimus CCUG 10230]
gi|423128934|ref|ZP_17116609.1| exodeoxyribonuclease III (xth) [Myroides odoratimimus CCUG 12901]
gi|423132589|ref|ZP_17120236.1| exodeoxyribonuclease III (xth) [Myroides odoratimimus CIP 101113]
gi|423328203|ref|ZP_17306010.1| exodeoxyribonuclease III (xth) [Myroides odoratimimus CCUG 3837]
gi|371645398|gb|EHO10924.1| exodeoxyribonuclease III (xth) [Myroides odoratimimus CCUG 10230]
gi|371649776|gb|EHO15252.1| exodeoxyribonuclease III (xth) [Myroides odoratimimus CCUG 12901]
gi|371649966|gb|EHO15440.1| exodeoxyribonuclease III (xth) [Myroides odoratimimus CIP 101113]
gi|404605106|gb|EKB04719.1| exodeoxyribonuclease III (xth) [Myroides odoratimimus CCUG 3837]
Length = 254
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 160/257 (62%), Gaps = 8/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSH-YHMFW 130
+K+ ++NVNG+RA + K +E+I EENPDI+ LQ+I+ +ED++P + + + Y ++
Sbjct: 1 MKIISYNVNGIRAAINK-GFIEWIQEENPDIICLQEIKAKEDQIPVADILAAGYPYQYYY 59
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
G GV +L K++P V +G G+ + GR + + + +++Y+P S ++
Sbjct: 60 SAQKAGYSGVAILCKQEPKNVVFGT-GIDYMDFEGRNLRVDYDDISVMSLYLP-SASNIE 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+DF+ + F++YI + + N++I GD N+C Q+ID+ +P +N K +G+ EER
Sbjct: 118 RLDFKYQYMDDFFNYIDNLKKEIPNLVICGDYNICHQAIDIHDPVRNAKVSGFLPEERAW 177
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+ ++ G +D+FR ++ E Y++W++R +AR NNKGWR+DYHLV+E + + IK
Sbjct: 178 LDKFINNGFIDSFR-MFNQEPHNYSWWTYR-ANARNNNKGWRIDYHLVTENMRSKIKHAT 235
Query: 309 IRSDVQGSTHCPVVLRL 325
I DV+ S HCP+++ +
Sbjct: 236 ILPDVKHSDHCPILVEI 252
>gi|226228755|ref|YP_002762861.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
gi|226091946|dbj|BAH40391.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
Length = 265
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 101/273 (36%), Positives = 146/273 (53%), Gaps = 25/273 (9%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ +WNVNGLRA +KK + +I PD++ LQ+ + + ++V L+ YH +W
Sbjct: 1 MKIYSWNVNGLRAVLKKGLFMPFIETHQPDVLCLQETKSEREQV----EIDLAGYHEYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGV--------------SNQRGRVITAKFKRFTFI 176
+ KG G + ++ +PL+V G S GRVITA+F++F +
Sbjct: 57 SATTKGYSGTAIFSRTEPLSVTNGFAKAVAKKYTLVDDAGRDSETEGRVITAEFEKFFVV 116
Query: 177 TVYVPNSGIKLKAIDFR-MIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKN 235
TVY PN+ L + R WD F + ++ L ++ GDLNV +DLANP N
Sbjct: 117 TVYTPNAKDDLSRLPLRSQHWDAAFLAHCKA-LEMKKPVVFCGDLNVAHTELDLANPKPN 175
Query: 236 VKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWS-FRNKSARLNNKGWRLDYH 294
G+T EER+ F+ LD G VD R ++ G Y++WS F N AR N GWR+DY
Sbjct: 176 RGRKGFTDEERQGFQSFLDAGFVDTLR-MFHQGNGHYSWWSHFANSRAR--NVGWRIDYV 232
Query: 295 LVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
LVS L ++ I +DV GS HCPV + LSL
Sbjct: 233 LVSAALQKSVATAEIHADVMGSDHCPVSVTLSL 265
>gi|160884274|ref|ZP_02065277.1| hypothetical protein BACOVA_02252 [Bacteroides ovatus ATCC 8483]
gi|156110013|gb|EDO11758.1| exodeoxyribonuclease III [Bacteroides ovatus ATCC 8483]
Length = 253
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 148/256 (57%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +ENPDI+ LQ+ + Q D+ P ++L + +
Sbjct: 1 MKIITYNVNGLRAAVSK-GLPEWLAQENPDILCLQETKLQPDQYPGEVFEALGYKSYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK++P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAILTKQEPDHVEYGM-GMEAYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M W + F Y+ +S N+I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 119 QAFKMAWLEDFQKYVMELQKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G VD+FR L P+++ YT+WS+R S R NKGWR+DY +VSE + +K I
Sbjct: 179 TRFLSAGYVDSFRTLCPEKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVSEPVRPLLKRAYI 236
Query: 310 RSDVQGSTHCPVVLRL 325
++ S HCP+ L +
Sbjct: 237 LNEAVHSDHCPMALEI 252
>gi|393788369|ref|ZP_10376499.1| exodeoxyribonuclease III (xth) [Bacteroides nordii CL02T12C05]
gi|392656042|gb|EIY49683.1| exodeoxyribonuclease III (xth) [Bacteroides nordii CL02T12C05]
Length = 254
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 150/256 (58%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K +++ +E PD++ LQ+ + Q ++ P +++ + +
Sbjct: 1 MKIITYNVNGLRAAVSK-GLPDWLAQEQPDVLCLQETKLQPEQYPGEAFEAVGYKGYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LT+ +P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAILTRREPDHVEYGM-GIEEYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ +S N+I+ GD N+C ++ID+ +P +N +G+ EER
Sbjct: 119 QAFKMVWLEAFQKYVTELQKSRPNLILCGDYNICHEAIDIHDPVRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G VD+FR LYP+++ YT+WS+R S R NKGWR+DY +VSE + +K I
Sbjct: 179 TRFLSAGFVDSFRTLYPEKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVSEPVRPMLKSACI 236
Query: 310 RSDVQGSTHCPVVLRL 325
++ S HCP+VL +
Sbjct: 237 LNEAVHSDHCPMVLEV 252
>gi|224539496|ref|ZP_03680035.1| hypothetical protein BACCELL_04401 [Bacteroides cellulosilyticus
DSM 14838]
gi|423224999|ref|ZP_17211467.1| exodeoxyribonuclease III (xth) [Bacteroides cellulosilyticus
CL02T12C19]
gi|224518891|gb|EEF87996.1| hypothetical protein BACCELL_04401 [Bacteroides cellulosilyticus
DSM 14838]
gi|392634046|gb|EIY27978.1| exodeoxyribonuclease III (xth) [Bacteroides cellulosilyticus
CL02T12C19]
Length = 254
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +E D++ +Q+ + Q D+ PE +L + H +
Sbjct: 1 MKIITYNVNGLRAAVSK-GLPEWLEQEQADVVCIQETKLQPDQYPEEALSTLGYKHYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK++P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 60 AQKKGYSGVAILTKKEPDHVEYGM-GIEEYDNEGRFIRADFGDISVVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F +Y+ +S +I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 119 QAFKMVWLEKFQEYVTELRKSRPKLILCGDYNICHEPIDIHDPIRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L+ G +D FR L+P+++ YT+WS+R S R NKGWR+DY +V+E + +K+ I
Sbjct: 179 TRFLNAGFIDTFRLLHPEQQ-EYTWWSYRFNS-RAKNKGWRIDYCMVTEPVRPLLKEARI 236
Query: 310 RSDVQGSTHCPVVL 323
+D S HCP++L
Sbjct: 237 LNDAVHSDHCPMLL 250
>gi|336399679|ref|ZP_08580479.1| exodeoxyribonuclease III Xth [Prevotella multisaccharivorax DSM
17128]
gi|336069415|gb|EGN58049.1| exodeoxyribonuclease III Xth [Prevotella multisaccharivorax DSM
17128]
Length = 267
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 149/275 (54%), Gaps = 27/275 (9%)
Query: 72 VKVSTWNVNGLRACVKKNACVE----------YILEENPDIMALQQIRCQEDEVPESFRK 121
+K +WNVNGLRACVK E Y + + D LQ+ + Q+ ++ F
Sbjct: 1 MKFISWNVNGLRACVKPKTDDEGNVKSKGFEAYFKDLDADFFCLQETKMQKGQLDLQF-- 58
Query: 122 SLSHYHMFW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITV 178
Y +W KG G + T+ PL+V YG+ G+ GRVIT + F + V
Sbjct: 59 --DGYQSYWNYAERKGYSGTAIYTRHTPLSVVYGM-GIEEHGHEGRVITMEMPEFYLVCV 115
Query: 179 YVPNS------GIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANP 232
Y PNS G K + + +RM W+ F Y+Q+ L +I+ GD+NV + ID+ NP
Sbjct: 116 YTPNSQEAETTGGKPRRLPYRMQWEDDFRAYLQA-LDQKKPVIVCGDMNVAHEEIDIKNP 174
Query: 233 DKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLD 292
N AG+T EER LLD+G D+FR L+PDE Y++WS+R +S R +N GWR+D
Sbjct: 175 KTNHLNAGFTDEERDKMTTLLDSGFTDSFRALHPDEV-TYSWWSYRFRS-REHNTGWRID 232
Query: 293 YHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
Y L S++L ++I I +++ GS HCP+ L L L
Sbjct: 233 YFLTSDRLRDHITGASIHTEIYGSDHCPIELDLDL 267
>gi|420432830|ref|ZP_14931843.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
gi|393046920|gb|EJB47899.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
Length = 236
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 134/229 (58%), Gaps = 8/229 (3%)
Query: 99 NPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSDKGQGGVGLLTKEKPLTVKYGIP- 156
+ D+ +Q+ + Q+++ F+ Y FW KG GV TK++PL+V YGI
Sbjct: 13 DADVFCIQESKMQQEQNTFEFKG----YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDI 68
Query: 157 GVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIII 216
++ GRV+T +F+ F + VY PNS L + +RM W+ F ++++ L +I+
Sbjct: 69 EEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-LELKKPVIV 127
Query: 217 SGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWS 276
GDLNV IDL NP N K AG++ EER F ELL+ G +D FR+ YP++E AYT+WS
Sbjct: 128 CGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYPNKEKAYTWWS 187
Query: 277 FRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRL 325
+ + AR + GWR+DY L S L +KD +I D+ GS HCPV L L
Sbjct: 188 YMQQ-ARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 235
>gi|343084488|ref|YP_004773783.1| exodeoxyribonuclease III [Cyclobacterium marinum DSM 745]
gi|342353022|gb|AEL25552.1| exodeoxyribonuclease III [Cyclobacterium marinum DSM 745]
Length = 252
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 153/257 (59%), Gaps = 8/257 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K+ ++NVNG+RA +KK E++ ENPDI+ LQ+++ E+++ S + L YH++W
Sbjct: 1 MKIISYNVNGIRAALKK-GFAEWLEMENPDIIGLQEVKSMENQIDISIFEDLG-YHIYWN 58
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG GV +L+K+KP+ ++ GI G+ + GR I A ++ F+F+ Y P+
Sbjct: 59 PAVKKGYSGVAILSKQKPIHIERGI-GIQAYDDEGRAIRADYEDFSFLCTYFPSGTTGGI 117
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
DF+ + Y Y Q ++ N++ISGD N+C ++ID+ NP N T+G+ EER
Sbjct: 118 RQDFKYAFLDDIYGYAQDLIKEKPNLMISGDYNICHKAIDIHNPILNKNTSGFLPEERAW 177
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
+ G D+FR L E Y++WS+R +AR NNKGWR+DYH+ + ++ +KD
Sbjct: 178 MDKFTSAGFDDSFR-LLNKEAHQYSWWSYR-ANARANNKGWRIDYHMTTPSISAKVKDVR 235
Query: 309 IRSDVQGSTHCPVVLRL 325
I ++ S HCP+V+ +
Sbjct: 236 ILHEIIHSDHCPIVVEI 252
>gi|392398112|ref|YP_006434713.1| exodeoxyribonuclease III [Flexibacter litoralis DSM 6794]
gi|390529190|gb|AFM04920.1| exodeoxyribonuclease III [Flexibacter litoralis DSM 6794]
Length = 258
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 155/261 (59%), Gaps = 8/261 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNG+RA +KK+ ++ E N DI+ LQ+I+ +E V ++ +SL + ++
Sbjct: 1 MKIITYNVNGIRAALKKDFS-GWLKEINADIICLQEIKIEEKLVDKALFESLGYESYWFS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFK----RFTFITVYVPNSGIK 186
KG G +LTK KP++V+ G S++ GRV+ A F F+ I VY+P+
Sbjct: 60 AQKKGYSGTAILTKIKPVSVEKGSDMQQSDEEGRVLKANFDVNGVSFSVINVYIPSGSSG 119
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
+++ W + F +Y++ NI++ GD N+C + ID+ NP N K++G+ EER
Sbjct: 120 ELRQEYKYQWLEEFEEYLEKVRSKQKNIVVCGDYNICHKEIDIHNPKSNKKSSGFLPEER 179
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
+ + G++DAFR+ + E Y++W++RN+ R NKGWR+DYH VS + + D
Sbjct: 180 KWLDDYEKKGMIDAFRN-FNQEPHNYSWWTYRNQ-CRAKNKGWRIDYHFVSAPFSEYMTD 237
Query: 307 CIIRSDVQGSTHCPVVLRLSL 327
C I S+V S HCPV+L LSL
Sbjct: 238 CQILSEVVHSDHCPVLLSLSL 258
>gi|48477699|ref|YP_023405.1| exodeoxyribonuclease III [Picrophilus torridus DSM 9790]
gi|48430347|gb|AAT43212.1| exodeoxyribonuclease III [Picrophilus torridus DSM 9790]
Length = 250
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 155/259 (59%), Gaps = 14/259 (5%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSH--YHMF 129
+K+ +WNVNG+RA VK N + +I EENPDI+ LQ+I+ ++++PE L H Y +F
Sbjct: 1 MKILSWNVNGIRAAVK-NGILNFINEENPDIVLLQEIKSGKNDLPEE----LHHMGYKIF 55
Query: 130 WIGSDK-GQGGVGLLTKEKPLTVKYGIPGVSN--QRGRVITAKFKRFTFITVYVPNSGIK 186
++K G G L+K +PL GI G+ + GRV K+ F I Y PNS
Sbjct: 56 INPAEKKGYSGTMALSKVEPLDYSSGI-GIKDYDSEGRVQILKYDNFYIINTYFPNSQHG 114
Query: 187 LKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
L +D+++ +D F ++ + +LR +II+GD NV + ID+A P N AG+T++ER
Sbjct: 115 LTRLDYKIDFDNKFLEFCE-KLRKEKPLIITGDFNVAHEEIDIARPKDNENNAGFTIQER 173
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
E L+ G +D +R+ + E G Y++WS+R +AR N GWR+DY +V++ N+KD
Sbjct: 174 NWMTEFLNHGYIDTYRYFHK-EPGHYSWWSYR-FNARAKNIGWRIDYFIVTDDFIKNVKD 231
Query: 307 CIIRSDVQGSTHCPVVLRL 325
II +V+GS H P+ L L
Sbjct: 232 SIILENVKGSDHAPLELLL 250
>gi|357125456|ref|XP_003564410.1| PREDICTED: LOW QUALITY PROTEIN: apurinic endonuclease-redox
protein-like [Brachypodium distachyon]
Length = 298
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 107/267 (40%), Positives = 152/267 (56%), Gaps = 14/267 (5%)
Query: 69 TTKVKVSTWNVNGLRACVKKN--ACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHY 126
T +K+ +WNVNGLR V + VE EN D++ LQ+ +E +V F+ + Y
Sbjct: 38 TKHMKILSWNVNGLRTMVGSGQFSAVELAQRENFDVLCLQETHLKEGDV-NDFKNLIPGY 96
Query: 127 -HMFWIGSDK--GQGGVGLLTKEKPLTVKYGIPGVSN-QRGRVITAKFKRFTFITVYVPN 182
H +W S G G++++ KP++V+YGI N Q GRVIT +F F + YVPN
Sbjct: 97 DHCYWSCSVARLDYSGTGVISRVKPISVQYGIGKAENDQEGRVITLEFDYFYLVNAYVPN 156
Query: 183 SGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGY 241
SG L+ + +R+ WD F DYI+ +L + +I++GDLN QSID+ NP + AG+
Sbjct: 157 SGRGLRRLIYRVDDWDPCFSDYIE-KLELSKPVIVAGDLNCARQSIDIHNPPAKTEDAGF 215
Query: 242 TVEERRNFR-ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQL 300
TVEER +F G VD FR +P+ G YT+W ++ R NKGWRLDY L SE +
Sbjct: 216 TVEERESFEINFSMRGYVDTFRKQHPNAVG-YTFWG---ENQRRTNKGWRLDYFLASEHI 271
Query: 301 ANNIKDCIIRSDVQGSTHCPVVLRLSL 327
++ + D I DV S H P+ L L L
Sbjct: 272 SDRVHDSYILPDVTSSDHSPIGLVLKL 298
>gi|281206753|gb|EFA80938.1| hypothetical protein PPL_06173 [Polysphondylium pallidum PN500]
Length = 2081
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 155/275 (56%), Gaps = 25/275 (9%)
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIR-----CQEDEVPESFRKSLSH 125
++K+ +WNV G +C KK Y+ +E PDI+ LQ+ + +D +P+ + S
Sbjct: 1249 QLKIMSWNVAGFNSCTKK-GFKAYVEQEQPDILCLQETKILPSKVPKDAIPKGYEYHFSA 1307
Query: 126 YHMFWIGSDKGQGGV---GLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVP 181
WI + + LLTK KP++V G+ G ++ GR+ITA++++F + YVP
Sbjct: 1308 CRKTWIPWYWVRILLLFDFLLTKVKPISVTMGMGVGKHDKEGRIITAEYEKFYLVNTYVP 1367
Query: 182 NSGI----KLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV 236
NSG+ L +D+R WD + Y+ EL +I +GDLNV + IDL NP NV
Sbjct: 1368 NSGVDRKTPLARLDYRTKEWDVDLFKYMH-ELNKKKPVIWTGDLNVAHKEIDLKNPKGNV 1426
Query: 237 KTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLV 296
+TAG+TVEER +F L++G VD FRH P +E YT+WS+ +++R +N GWRLDY +V
Sbjct: 1427 RTAGFTVEERTSFSGFLESGFVDTFRHFNPKKEFQYTFWSYM-RNSRASNAGWRLDYFIV 1485
Query: 297 SEQLANNIKDCIIRSDVQGS-------THC-PVVL 323
++ IRS V GS TH P++L
Sbjct: 1486 PLTFIGSVAHSFIRSKVTGSDCLFIRYTHSYPIIL 1520
>gi|307719602|ref|YP_003875134.1| hypothetical protein STHERM_c19260 [Spirochaeta thermophila DSM
6192]
gi|306533327|gb|ADN02861.1| hypothetical protein STHERM_c19260 [Spirochaeta thermophila DSM
6192]
Length = 256
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 145/257 (56%), Gaps = 5/257 (1%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+ V +WNVNG+RA KK +E+I +E P+I+ LQ+ + ++D++P + YH +W
Sbjct: 2 ISVYSWNVNGIRAAAKK-GLLEWIEKERPEILCLQETKARKDQLPSELARP-DGYHTYWA 59
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
+DK G GV L T +P +V+ ++ GR + A F+ F Y PNS +
Sbjct: 60 EADKPGYSGVALFTLHEPASVEPLGVDEFDREGRTLIADFRSFVLFDCYFPNSQEAGARL 119
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
D+++ + + + + + +++ISGD N+ +DLA P+ N K GY EER
Sbjct: 120 DYKLAYCNAVKERADAYVAAGRHVLISGDFNIAHTPLDLARPEANEKNPGYLPEEREWMT 179
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
L +G VD FR ++ E G YT+W++R K AR + GWR+DYH V E+ + +K+ +I
Sbjct: 180 YFLSSGYVDTFR-MFTKEGGHYTWWTYRFK-AREKDIGWRIDYHCVDERFKDKVKESVIL 237
Query: 311 SDVQGSTHCPVVLRLSL 327
DV GS HCPV + L +
Sbjct: 238 KDVMGSDHCPVKITLDV 254
>gi|218259778|ref|ZP_03475367.1| hypothetical protein PRABACTJOHN_01026 [Parabacteroides johnsonii
DSM 18315]
gi|423344446|ref|ZP_17322158.1| exodeoxyribonuclease III (xth) [Parabacteroides johnsonii
CL02T12C29]
gi|218224906|gb|EEC97556.1| hypothetical protein PRABACTJOHN_01026 [Parabacteroides johnsonii
DSM 18315]
gi|409212844|gb|EKN05878.1| exodeoxyribonuclease III (xth) [Parabacteroides johnsonii
CL02T12C29]
Length = 253
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 148/257 (57%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +E PD++ LQ+ + Q D+ P ++L + +
Sbjct: 1 MKIITYNVNGLRAAVGK-GLPEWLAQEQPDVLCLQETKLQPDQYPAEAFEALGYKAWLFS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +L++ +P V+YG+ G+ + GR I A F + I+VY P+ +
Sbjct: 60 AQKKGYSGVAILSRREPDHVEYGM-GIEKYDNEGRFIRADFGDLSVISVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M W + F +Y+ +S +I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 119 QAFKMEWLEDFQNYVVELQKSRPKLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LD G +D FR L PD++ YT+WS+R SAR NKGWR+DY +VSE + ++ I
Sbjct: 179 TRFLDAGYIDTFRLLNPDKQ-EYTWWSYRF-SARAKNKGWRIDYCMVSEPMKAQVEKAYI 236
Query: 310 RSDVQGSTHCPVVLRLS 326
++ S HCP V+ +S
Sbjct: 237 LNEAVHSDHCPAVIEVS 253
>gi|313206096|ref|YP_004045273.1| exodeoxyribonuclease iii xth [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|383485408|ref|YP_005394320.1| exodeoxyribonuclease iii xth [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|386321917|ref|YP_006018079.1| Exonuclease III [Riemerella anatipestifer RA-GD]
gi|416109641|ref|ZP_11591572.1| Exodeoxyribonuclease III [Riemerella anatipestifer RA-YM]
gi|442314713|ref|YP_007356016.1| Exonuclease III [Riemerella anatipestifer RA-CH-2]
gi|312445412|gb|ADQ81767.1| exodeoxyribonuclease III Xth [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|315023722|gb|EFT36725.1| Exodeoxyribonuclease III [Riemerella anatipestifer RA-YM]
gi|325336460|gb|ADZ12734.1| Exonuclease III [Riemerella anatipestifer RA-GD]
gi|380460093|gb|AFD55777.1| exodeoxyribonuclease iii xth [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|441483636|gb|AGC40322.1| Exonuclease III [Riemerella anatipestifer RA-CH-2]
Length = 253
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 158/258 (61%), Gaps = 10/258 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVP-ESFRKSLSHYHMFW 130
+K+ ++NVNG+RA K+ + ++ PD++ Q+ + Q+D++ SF K YH +W
Sbjct: 1 MKIISYNVNGIRAAFNKDL-IGWLGHAAPDVICFQESKAQKDQIDIASFEKE--GYHTYW 57
Query: 131 IGSDK-GQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
++K G GVG+ TK +P V+YG + ++ GRVI F+ F+ I+VYVP S +
Sbjct: 58 FSAEKKGYSGVGIATKIQPKHVEYGCDMELYDKEGRVIRVDFEDFSVISVYVP-SATNID 116
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+DF+M + F YI+ ++ N+IISGD N+C Q+ID+ +P + +G+ ER
Sbjct: 117 RLDFKMQFCYDFLAYIKELRKTIPNLIISGDFNICHQAIDIHDPVRLKNVSGFLPIEREW 176
Query: 249 FRELL-DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
E L + GL+D+FR+ + E Y++WS+R ++AR NNKGWRLDYH VS+ L + +
Sbjct: 177 MTEFLKECGLIDSFRY-FNTEPNQYSWWSYR-QNARANNKGWRLDYHFVSDSLESRLSRG 234
Query: 308 IIRSDVQGSTHCPVVLRL 325
+I SD S HCPV++ L
Sbjct: 235 LILSDAYHSDHCPVLVEL 252
>gi|410670052|ref|YP_006922423.1| exodeoxyribonuclease III [Methanolobus psychrophilus R15]
gi|409169180|gb|AFV23055.1| exodeoxyribonuclease III [Methanolobus psychrophilus R15]
Length = 261
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 146/259 (56%), Gaps = 6/259 (2%)
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
K+++ +WNVNG+R+ V+K +E++ +E PDI+ +Q+ + Q++++ + + F
Sbjct: 7 KIRIISWNVNGIRS-VQKKGFLEWLQKEQPDILCIQETKAQKEQLGSDLTEVNGYRSYFS 65
Query: 131 IGSDKGQGGVGLLTKEKPLTVK--YGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG GV L TK++PL++K +GIP ++ GR++ A + F + +Y PN +
Sbjct: 66 SAEKKGYSGVALYTKKEPLSIKCGFGIPKFDSE-GRILIADYGDFILLNIYFPNGKASPE 124
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+ ++M + F +Y + +II GD+N + IDLA P +N +G+ EER
Sbjct: 125 RLAYKMEFYDAFLEYALELKKQGRKLIICGDVNTAHREIDLARPKENETISGFLPEERAW 184
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
L G VD FR L+P E G YT+WS R+ AR N GWR+DY VSE NI D
Sbjct: 185 IDRFLSQGYVDTFRSLHP-EPGQYTWWSMRS-GARTRNVGWRIDYFYVSENAMENILDSF 242
Query: 309 IRSDVQGSTHCPVVLRLSL 327
I DV GS HCP+ + + L
Sbjct: 243 IMPDVPGSDHCPLGIVIEL 261
>gi|348679732|gb|EGZ19548.1| hypothetical protein PHYSODRAFT_408364 [Phytophthora sojae]
Length = 280
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/281 (37%), Positives = 156/281 (55%), Gaps = 31/281 (11%)
Query: 72 VKVSTWNVNGLRACVKKNACVE---YILEENPDIMALQQIRCQEDEVPESFRKSLSHY-H 127
+K+ WNVNGLRA +K++ V Y+ +E+PDI L + + DE+ + L Y H
Sbjct: 1 IKIVAWNVNGLRAILKRDESVHLRAYVAQEDPDIFCLSETKICRDEL-QKIEDFLPQYEH 59
Query: 128 MFW-IGSDKGQGGVGLLTKEKPLTVKYGI-------PGVS-------NQRGRVITAKFKR 172
+W KG + +K KPL+VK I GVS +Q GR + ++ +
Sbjct: 60 QYWSCAVKKGYASTAIFSKTKPLSVKDEIIVGDHDSKGVSKSANSGKDQEGRFLALEYPK 119
Query: 173 FTFITVYVPNSGIKLKAIDFRM-IWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLAN 231
F + YVPN+G KL+ +DFR WD+ ++ E+ ++ GDLNV Q ID+ N
Sbjct: 120 FWLVHTYVPNAGGKLERLDFRTNQWDKAMLREMK-EMEKTKPVVWCGDLNVAHQEIDIHN 178
Query: 232 PDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRL 291
P N ++AG+T EER +F +L+ G VD FRHL+PD+ Y+Y+ +R+ + R NKGWRL
Sbjct: 179 PKGNKRSAGFTDEERESFGNILENGFVDTFRHLHPDKV-EYSYFGYRH-NMRAQNKGWRL 236
Query: 292 DYHLVSEQLANNI-------KDCIIRSDVQGSTHCPVVLRL 325
DY +VSE+L N+ + IR V GS H P+ L L
Sbjct: 237 DYFVVSEKLMPNVVSVFGWERSSYIRGSVVGSDHLPIGLEL 277
>gi|440780818|ref|ZP_20959289.1| exodeoxyribonuclease III [Clostridium pasteurianum DSM 525]
gi|440221406|gb|ELP60611.1| exodeoxyribonuclease III [Clostridium pasteurianum DSM 525]
Length = 254
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 148/258 (57%), Gaps = 6/258 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA V K E++ ENPDI+ +Q+ + Q + + E + +Y F
Sbjct: 1 MKIYSWNVNGLRA-VSKKGFFEFVSYENPDILCIQETKLQLETLSEELKNIKEYYSYFSF 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV TK+KP+++K+GI G+ ++ GR++ +F F +Y PN +
Sbjct: 60 AERKGYSGVATYTKKKPVSIKHGI-GIEKFDKEGRILITEFNEFILFNIYFPNGQKDEER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
+++++ + ++Y+ + III GD N+ + ID+ N N K +G+ ER+
Sbjct: 119 LNYKLEFYDALFEYLDKLKIEDKKIIICGDYNIAHREIDIKNAKANEKISGFLPIERKLI 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
+ + G VD FR ++ EE Y++WS+R K AR N GWR+DY LV+E L N+K+ I
Sbjct: 179 DKFISKGYVDTFRSIHR-EEIKYSWWSYRFK-ARERNAGWRIDYFLVTENLLENVKEADI 236
Query: 310 RSDVQGSTHCPVVLRLSL 327
+DV GS HCPV + L +
Sbjct: 237 LNDVMGSDHCPVSILLDI 254
>gi|242054697|ref|XP_002456494.1| hypothetical protein SORBIDRAFT_03g037250 [Sorghum bicolor]
gi|241928469|gb|EES01614.1| hypothetical protein SORBIDRAFT_03g037250 [Sorghum bicolor]
Length = 325
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/267 (38%), Positives = 160/267 (59%), Gaps = 15/267 (5%)
Query: 69 TTKVKVSTWNVNGLRACVKKN-ACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHY- 126
T +K+ +WNVNGL+ V+ + E + EN D++ LQ+ QE V + F+ + Y
Sbjct: 66 TNCMKILSWNVNGLQTIVQSGFSADELVGRENFDVLCLQETHLQERNV-DLFKNLVPEYD 124
Query: 127 HMFWIGSDK--GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPN 182
+ +W S G G ++++ +P++V+YG+ GV +Q GR+IT +F F + YVPN
Sbjct: 125 YTYWSCSVARLGYSGTAVISRVQPISVQYGL-GVPEHDQEGRLITLEFDDFYLVNAYVPN 183
Query: 183 SGIKLKAIDFRM-IWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGY 241
SG L+ +++R+ WD F D+I+ +L S+ +I++GDLN +SID+ NP + AG+
Sbjct: 184 SGRGLRRLNYRVNEWDPCFSDFIK-KLESSKPVIVAGDLNCARESIDIHNPQAKTEAAGF 242
Query: 242 TVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQL 300
TVEER +F E + GL+D FR +P+ AYT+W ++ R+ NKGWRLDY L SE +
Sbjct: 243 TVEERESFEENFSSEGLIDTFRKQHPNAV-AYTFWG---ENQRITNKGWRLDYFLASESI 298
Query: 301 ANNIKDCIIRSDVQGSTHCPVVLRLSL 327
A+ + D DV S H P+ L L L
Sbjct: 299 ADKVHDSYTLPDVSLSDHSPIGLVLKL 325
>gi|441499473|ref|ZP_20981659.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
gi|441437006|gb|ELR70364.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
Length = 258
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 150/260 (57%), Gaps = 9/260 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+ + +WNVNGLRA +KK + + +PDI+ LQ+ + Q +++ + + L Y +
Sbjct: 4 LSLVSWNVNGLRAIIKK-GFITSLKSLDPDILCLQETKGQVEDIKTAL-QLLPDYKAYVN 61
Query: 132 GSD--KGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
S KG G +L+K++PL + Y + +Q GRVITA+F F + VY PNSG L
Sbjct: 62 CSKLKKGYSGTAILSKKEPLDITYDLGHEEHDQEGRVITAEFDHFFLVNVYTPNSGQGLN 121
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNV-KTAGYTVEERR 247
+++R WD F ++++S L +++ GDLNV + ID+A +N K+AGYT +E
Sbjct: 122 RLEYRQAWDVIFLNHLRS-LEQRKPVVLCGDLNVAHEEIDIARAKQNYNKSAGYTQQEID 180
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
F+ L+ G VD FRH +P EE YTYW+ + ++R N GWR+DY LVS L +K
Sbjct: 181 GFKSYLEHGFVDTFRHFFP-EEVKYTYWN-QMFNSRARNVGWRIDYFLVSPALLGQVKTA 238
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
I GS HCPV L L L
Sbjct: 239 AIHDQFHGSDHCPVELVLYL 258
>gi|329955159|ref|ZP_08296116.1| exodeoxyribonuclease III [Bacteroides clarus YIT 12056]
gi|328526158|gb|EGF53177.1| exodeoxyribonuclease III [Bacteroides clarus YIT 12056]
Length = 254
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 149/257 (57%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ E PD++ LQ+ + Q ++ P + + H +
Sbjct: 1 MKIITYNVNGLRAAVTK-GFPEWLANEQPDVLCLQETKLQPEQYPAEALDASGYKHYLYS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK +P V+YG+ G+ + GR I A + + ++VY P+ +
Sbjct: 60 ARKKGYSGVAILTKREPDHVEYGM-GIEEYDNEGRFIRADYGDLSIVSVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F Y+ R+ +I+ GD N+C ++ID+ +P +N +G+ EER
Sbjct: 119 QAFKMVWLEKFQQYVVELQRTRPKLILCGDYNICHEAIDIHDPVRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L+ G +D FR L+PD++ YT+WS+R S R NKGWR+DY +V+E + +K+ I
Sbjct: 179 TRFLNAGFIDTFRLLHPDKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVNEPVRPMLKEARI 236
Query: 310 RSDVQGSTHCPVVLRLS 326
+D S HCP++L ++
Sbjct: 237 LNDAVHSDHCPMMLEIA 253
>gi|423347898|ref|ZP_17325583.1| exodeoxyribonuclease III (xth) [Parabacteroides merdae CL03T12C32]
gi|409215384|gb|EKN08385.1| exodeoxyribonuclease III (xth) [Parabacteroides merdae CL03T12C32]
Length = 253
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 148/257 (57%), Gaps = 6/257 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +E PD++ LQ+ + Q ++ P ++L + +
Sbjct: 1 MKIITYNVNGLRAAVGK-GLPEWLAQEQPDVLCLQETKLQPEQYPAEAFEALGYKAWLFS 59
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +L++ +P V+YG+ G+ + GR I A F + I+VY P+ +
Sbjct: 60 AQKKGYSGVAILSRREPDHVEYGM-GIEKYDNEGRFIRADFGDLSVISVYHPSGTSGDER 118
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M W + F +Y+ +S +I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 119 QAFKMEWLEDFQNYVMELQKSRPKLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWM 178
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LD G +D FR L PD++ YT+WS+R SAR NKGWR+DY +VSE + ++ I
Sbjct: 179 TRFLDAGYIDTFRLLNPDKQ-EYTWWSYRF-SARAKNKGWRIDYCMVSEPMKAQVEKAYI 236
Query: 310 RSDVQGSTHCPVVLRLS 326
++ S HCP V+ +S
Sbjct: 237 LNEAVHSDHCPAVIEVS 253
>gi|298481071|ref|ZP_06999265.1| exodeoxyribonuclease III [Bacteroides sp. D22]
gi|298272645|gb|EFI14212.1| exodeoxyribonuclease III [Bacteroides sp. D22]
Length = 254
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 147/256 (57%), Gaps = 6/256 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +ENPDI+ LQ+ + Q D+ P ++L + +
Sbjct: 2 MKIITYNVNGLRAAVSK-GLPEWLAQENPDILCLQETKLQPDQYPGEVFEALGYKSYLYS 60
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +LTK +P V+YG+ G+ + GR I A F + ++VY P+ +
Sbjct: 61 AQKKGYSGVAILTKREPDHVEYGM-GMEAYDNEGRFIRADFGDLSVVSVYHPSGTSGDER 119
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M W + F Y+ +S N+I+ GD N+C + ID+ +P +N +G+ EER
Sbjct: 120 QAFKMGWLEDFQKYVMELQKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWM 179
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
L G VD+FR L P+++ YT+WS+R S R NKGWR+DY +VSE + +K I
Sbjct: 180 TRFLSAGYVDSFRTLCPEKQ-EYTWWSYRFNS-RAKNKGWRIDYCMVSEPVRPLLKRAYI 237
Query: 310 RSDVQGSTHCPVVLRL 325
++ S HCP+ L +
Sbjct: 238 LNEAVHSDHCPMALEI 253
>gi|427383096|ref|ZP_18879816.1| exodeoxyribonuclease III (xth) [Bacteroides oleiciplenus YIT 12058]
gi|425729010|gb|EKU91863.1| exodeoxyribonuclease III (xth) [Bacteroides oleiciplenus YIT 12058]
Length = 252
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 151/256 (58%), Gaps = 8/256 (3%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ T+NVNGLRA V K E++ +E D++ +Q+ + Q D+ PE K HY +
Sbjct: 1 MKIITYNVNGLRAAVSK-GLPEWLEQEQADVVCIQETKLQPDQYPEEALKGYKHY--LYS 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKA 189
KG GV +L+K++P V+YG+ G+ + GR I A + + ++VY P+ +
Sbjct: 58 AQKKGYSGVAILSKQEPDHVEYGM-GMEEYDNEGRFIRADYGDISVVSVYHPSGTSGDER 116
Query: 190 IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNF 249
F+M+W + F +Y+ +S +I+ GD N+C ++ID+ +P +N +G+ EER
Sbjct: 117 QAFKMVWLEKFQEYVTELRKSRPKLILCGDYNICHEAIDIHDPIRNATNSGFLPEEREWM 176
Query: 250 RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309
LD G +D FR L+P+ + YT+WS+R S R NKGWR+DY +V+E + + +K+ I
Sbjct: 177 TRFLDAGFIDTFRALHPELQ-EYTWWSYRFNS-RAKNKGWRIDYCMVTEPVRSMLKEARI 234
Query: 310 RSDVQGSTHCPVVLRL 325
+D S HCP++L +
Sbjct: 235 LNDAVHSDHCPMLLEI 250
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,126,660,132
Number of Sequences: 23463169
Number of extensions: 217224241
Number of successful extensions: 608894
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3139
Number of HSP's successfully gapped in prelim test: 2641
Number of HSP's that attempted gapping in prelim test: 589487
Number of HSP's gapped (non-prelim): 6421
length of query: 327
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 185
effective length of database: 9,027,425,369
effective search space: 1670073693265
effective search space used: 1670073693265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)