BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6001
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P27864|RRP1_DROME Recombination repair protein 1 OS=Drosophila melanogaster GN=Rrp1
PE=1 SV=2
Length = 679
Score = 225 bits (573), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 160/256 (62%), Gaps = 11/256 (4%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNV GLRA +KK+ ++ I E PDI LQ+ +C D++PE + L YH +W+
Sbjct: 427 LKICSWNVAGLRAWLKKDG-LQLIDLEEPDIFCLQETKCANDQLPEEVTR-LPGYHPYWL 484
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVSNQR----GRVITAKFKRFTFITVYVPNSGIKL 187
G GV + +K P+ V+YGI N+ GR+ITA++++F I VYVPNSG KL
Sbjct: 485 CMPGGYAGVAIYSKIMPIHVEYGI---GNEEFDDVGRMITAEYEKFYLINVYVPNSGRKL 541
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERR 247
++ RM W++ F Y++ +L + ++I GD+NV IDL NP N K AG+T EER
Sbjct: 542 VNLEPRMRWEKLFQAYVK-KLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERD 600
Query: 248 NFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307
ELL G VD FRHLYPD +GAYT+W++ +AR N GWRLDY LVSE+ + +
Sbjct: 601 KMTELLGLGFVDTFRHLYPDRKGAYTFWTYM-ANARARNVGWRLDYCLVSERFVPKVVEH 659
Query: 308 IIRSDVQGSTHCPVVL 323
IRS GS HCP+ +
Sbjct: 660 EIRSQCLGSDHCPITI 675
>sp|P28352|APEX1_MOUSE DNA-(apurinic or apyrimidinic site) lyase OS=Mus musculus GN=Apex1
PE=1 SV=2
Length = 317
Score = 225 bits (573), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 183/304 (60%), Gaps = 7/304 (2%)
Query: 28 RKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVK 87
+ + + K+S +K++ E + D ++ S + +K+ +WNV+GLRA +K
Sbjct: 17 KSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSPSGKSATLKICSWNVDGLRAWIK 76
Query: 88 KNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTK 145
K ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL++
Sbjct: 77 KKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEGYSGVGLLSR 135
Query: 146 EKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYI 204
+ PL V YGI +Q GRVI A+F+ F +T YVPN+G L +++R WD+ F ++
Sbjct: 136 QCPLKVSYGIGEEEHDQEGRVIVAEFESFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFL 195
Query: 205 QSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRH 263
+ +L S +++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+FRH
Sbjct: 196 K-DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRH 254
Query: 264 LYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVL 323
LYP+ AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP+ L
Sbjct: 255 LYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITL 313
Query: 324 RLSL 327
L+L
Sbjct: 314 YLAL 317
>sp|P43138|APEX1_RAT DNA-(apurinic or apyrimidinic site) lyase OS=Rattus norvegicus
GN=Apex1 PE=1 SV=2
Length = 317
Score = 224 bits (571), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/304 (39%), Positives = 183/304 (60%), Gaps = 7/304 (2%)
Query: 28 RKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVK 87
+ + + K+S +K++ E + D ++ S + +K+ +WNV+GLRA +K
Sbjct: 17 KSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSASGKSATLKICSWNVDGLRAWIK 76
Query: 88 KNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTK 145
K ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL++
Sbjct: 77 KKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEGYSGVGLLSR 135
Query: 146 EKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYI 204
+ PL V YGI +Q GRVI A+F+ F +T YVPN+G L +++R WD+ F ++
Sbjct: 136 QCPLKVSYGIGEEEHDQEGRVIVAEFESFILVTAYVPNAGRGLVRLEYRQRWDEAFRKFL 195
Query: 205 QSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRH 263
+ +L S +++ GDLNV + IDL NP N K AG+T +ER+ F E+L L D+FRH
Sbjct: 196 K-DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGEMLQAVPLADSFRH 254
Query: 264 LYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVL 323
LYP+ AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP+ L
Sbjct: 255 LYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITL 313
Query: 324 RLSL 327
L+L
Sbjct: 314 YLAL 317
>sp|A0MTA1|APEX1_DANRE DNA-(apurinic or apyrimidinic site) lyase OS=Danio rerio GN=apex1
PE=1 SV=1
Length = 310
Score = 224 bits (570), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 161/259 (62%), Gaps = 6/259 (2%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+++WNV+GLRA VKKN ++++ +E+PDI+ LQ+ +C E +P + H +W
Sbjct: 55 MKITSWNVDGLRAWVKKNG-LDWVRKEDPDILCLQETKCAEKALPADITGMPEYPHKYWA 113
Query: 132 GSD--KGQGGVGLLTKEKPLTVKYGIPGVSNQR-GRVITAKFKRFTFITVYVPNSGIKLK 188
GS+ +G GV +L K +PL V YGI + + GRVITA+F F +T YVPN+ L
Sbjct: 114 GSEDKEGYSGVAMLCKTEPLNVTYGIGKEEHDKEGRVITAEFPDFFLVTAYVPNASRGLV 173
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+D+R WD F Y+ L + +++ GDLNV Q IDL NP N K AG+T EER
Sbjct: 174 RLDYRKTWDVDFRAYLCG-LDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAGFTPEEREG 232
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +LL+ G D+FR LYPD+ AYT+W++ +AR N GWRLDY ++S L + D
Sbjct: 233 FTQLLEAGFTDSFRELYPDQAYAYTFWTYM-MNARSKNVGWRLDYFVLSSALLPGLCDSK 291
Query: 309 IRSDVQGSTHCPVVLRLSL 327
IR+ GS HCP+ L L++
Sbjct: 292 IRNTAMGSDHCPITLFLAV 310
>sp|P27695|APEX1_HUMAN DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1
PE=1 SV=2
Length = 318
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 291 LLPALCDSKIRSKALGSDHCPITLYLAL 318
>sp|A2T7I6|APEX1_PONPY DNA-(apurinic or apyrimidinic site) lyase OS=Pongo pygmaeus
GN=APEX1 PE=3 SV=1
Length = 318
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRRFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 291 LLTALCDSKIRSKALGSDHCPITLYLAL 318
>sp|A2T6Y4|APEX1_PANTR DNA-(apurinic or apyrimidinic site) lyase OS=Pan troglodytes
GN=APEX1 PE=3 SV=1
Length = 318
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 291 LLPALCDSKIRSKALGSDHCPITLYLAL 318
>sp|A1YFZ3|APEX1_PANPA DNA-(apurinic or apyrimidinic site) lyase OS=Pan paniscus GN=APEX1
PE=3 SV=1
Length = 318
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
H +W SDK G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 291 LLPALCDSKIRSKALGSDHCPITLYLAL 318
>sp|P37454|EXOA_BACSU Exodeoxyribonuclease OS=Bacillus subtilis (strain 168) GN=exoA PE=1
SV=1
Length = 252
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 163/262 (62%), Gaps = 16/262 (6%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEV---PESFRKSLSHYHM 128
+K+ +WNVNGLRA ++K + Y+ EE+ DI+ LQ+ + Q+ +V PE YH+
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPED-------YHV 53
Query: 129 FW-IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGI 185
+W KG G + +K++PL V YGI GV +Q GRVIT +F+ +TVY PNS
Sbjct: 54 YWNYAVKKGYSGTAVFSKQEPLQVIYGI-GVEEHDQEGRVITLEFENVFVMTVYTPNSRR 112
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L+ ID+RM W++ YI EL +I+ GDLNV Q IDL NP N AG++ +E
Sbjct: 113 GLERIDYRMQWEEALLSYIL-ELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQE 171
Query: 246 RRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305
R F L+ G VD+FRH+YPD EGAY++WS+R AR N GWR+DY +VSE L I+
Sbjct: 172 REAFTRFLEAGFVDSFRHVYPDLEGAYSWWSYR-AGARDRNIGWRIDYFVVSESLKEQIE 230
Query: 306 DCIIRSDVQGSTHCPVVLRLSL 327
D I +DV GS HCPV L +++
Sbjct: 231 DASISADVMGSDHCPVELIINI 252
>sp|P23196|APEX1_BOVIN DNA-(apurinic or apyrimidinic site) lyase OS=Bos taurus GN=APEX1
PE=1 SV=2
Length = 318
Score = 218 bits (556), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/263 (42%), Positives = 166/263 (63%), Gaps = 7/263 (2%)
Query: 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHM 128
+ +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++ H
Sbjct: 59 SATLKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPVELQELSGLSHQ 117
Query: 129 FWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYVPNSGI 185
+W SDK G GVGLL+++ PL V YGI +Q GRVI A++ F +T YVPN+G
Sbjct: 118 YWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAGR 177
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T +E
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304
R+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S+ + +
Sbjct: 237 RQGFGELLQAVPLTDSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSQSVLPAL 295
Query: 305 KDCIIRSDVQGSTHCPVVLRLSL 327
D IRS GS HCP+ L L+L
Sbjct: 296 CDSKIRSKALGSDHCPITLYLAL 318
>sp|A1YES6|APEX1_GORGO DNA-(apurinic or apyrimidinic site) lyase OS=Gorilla gorilla
gorilla GN=APEX1 PE=3 SV=1
Length = 318
Score = 218 bits (556), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 166/268 (61%), Gaps = 9/268 (3%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 56 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 112
Query: 124 SHYHMFWIGSDKGQG--GVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
+ +W +G GVGLL+++ PL V YGI +Q GRVI A+F F +T YV
Sbjct: 113 GLSYQYWSAPXXKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYV 172
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG
Sbjct: 173 PNAGRGLVRLEYRQRWDEAFRRFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 231
Query: 241 YTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
+T +ER+ F ELL L D+FRHLYP+ AYT+W++ +AR N GWRLDY L+S
Sbjct: 232 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHS 290
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLSL 327
L + D IRS GS HCP+ L L+L
Sbjct: 291 LLPALCDSKIRSKALGSDHCPITLYLAL 318
>sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP
PE=2 SV=2
Length = 536
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 116/271 (42%), Positives = 164/271 (60%), Gaps = 14/271 (5%)
Query: 67 PYTTK-VKVSTWNVNGLRACVK--KNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
P TK VKV TWNVNGLR +K + ++ EN DI+ LQ+ + Q +V E + +
Sbjct: 270 PEGTKCVKVMTWNVNGLRGLLKFESFSALQLAQRENFDILCLQETKLQVKDVEEIKKTLI 329
Query: 124 SHY-HMFWIGS--DKGQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITV 178
Y H FW S G G ++++ KPL+V+YG G+S GR++TA+F F I
Sbjct: 330 DGYDHSFWSCSVSKLGYSGTAIISRIKPLSVRYGT-GLSGHDTEGRIVTAEFDSFYLINT 388
Query: 179 YVPNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVK 237
YVPNSG LK + +R+ WD+ ++I+ EL + ++++GDLN + ID+ NP N +
Sbjct: 389 YVPNSGDGLKRLSYRIEEWDRTLSNHIK-ELEKSKPVVLTGDLNCAHEEIDIFNPAGNKR 447
Query: 238 TAGYTVEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLV 296
+AG+T+EER++F LLD G VD FR +P G YTYW +R+ R NKGWRLDY LV
Sbjct: 448 SAGFTIEERQSFGANLLDKGFVDTFRKQHPGVVG-YTYWGYRH-GGRKTNKGWRLDYFLV 505
Query: 297 SEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
S+ +A N+ D I D+ GS HCP+ L L L
Sbjct: 506 SQSIAANVHDSYILPDINGSDHCPIGLILKL 536
>sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase OS=Dictyostelium
discoideum GN=apeA PE=2 SV=2
Length = 361
Score = 192 bits (487), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 165/267 (61%), Gaps = 20/267 (7%)
Query: 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRC-----QEDEVPESFRKSLSH 125
++K+ +WNV G ++ + K EY+ +ENPD++ LQ+ + ++D++P+ +
Sbjct: 104 QMKIISWNVAGFKSVLSK-GFTEYVEKENPDVLCLQETKINPSNIKKDQMPKGYE----- 157
Query: 126 YHMFWIGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNS 183
YH F KG G G+LTK+KP + +GI G++ + GRVIT ++ +F + Y+PN+
Sbjct: 158 YH-FIEADQKGHHGTGVLTKKKPNAITFGI-GIAKHDNEGRVITLEYDQFYIVNTYIPNA 215
Query: 184 GIK-LKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGY 241
G + L+ +D+R+ WD F Y++ +L + II GDLNV IDL NP N K+AG+
Sbjct: 216 GTRGLQRLDYRIKEWDVDFQAYLE-KLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGF 274
Query: 242 TVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLA 301
T+EER +F L+ G VD++RH P +EG+YT+WS+ R N GWRLDY +VS++L
Sbjct: 275 TIEERTSFSNFLEKGYVDSYRHFNPGKEGSYTFWSYLG-GGRSKNVGWRLDYFVVSKRLM 333
Query: 302 NNIK-DCIIRSDVQGSTHCPVVLRLSL 327
++IK R+ V GS HCP+ + + L
Sbjct: 334 DSIKISPFHRTSVMGSDHCPIGVVVDL 360
>sp|P0A2X4|EXOA_STRR6 Exodeoxyribonuclease OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=exoA PE=3 SV=1
Length = 275
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 145/280 (51%), Gaps = 29/280 (10%)
Query: 72 VKVSTWNVNGLRACVKKNAC--------VEYILEENPDIMALQQIRCQEDEVP----ESF 119
+K+ +WN++ L A + ++ ++ ++ EN DI+A+Q+ + E
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPTKKHVEIL 60
Query: 120 RKSLSHYHMFWIGSD----KGQGGVGLL-TKEKPLTVKY---GIPGVSNQRGRVITAKFK 171
+ Y W S KG G L KE T+ + G P + GR+IT +F
Sbjct: 61 EELFPGYENTWRSSQEPARKGYAGTMFLYKKELTPTISFPEIGAPSTMDLEGRIITLEFD 120
Query: 172 RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLAN 231
F VY PN+G LK ++ R +WD + +Y+ +EL ++ +GD NV IDLAN
Sbjct: 121 AFFVTQVYTPNAGDGLKRLEERQVWDAKYAEYL-AELDKEKPVLATGDYNVAHNEIDLAN 179
Query: 232 PDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRL 291
P N ++ G+T EER F LL TG D FRH++ D YT+W+ R+K++++NN GWR+
Sbjct: 180 PASNRRSPGFTDEERAGFTNLLATGFTDTFRHVHGDVPERYTWWAQRSKTSKINNTGWRI 239
Query: 292 DYHLVSEQLANNIKDCIIRSDVQGST----HCPVVLRLSL 327
DY L S N I D + +SD+ S H P+VL + L
Sbjct: 240 DYWLTS----NRIADKVTKSDMIDSGARQDHTPIVLEIDL 275
>sp|P0A2X3|EXOA_STRPN Exodeoxyribonuclease OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=exoA PE=3 SV=1
Length = 275
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 145/280 (51%), Gaps = 29/280 (10%)
Query: 72 VKVSTWNVNGLRACVKKNAC--------VEYILEENPDIMALQQIRCQEDEVP----ESF 119
+K+ +WN++ L A + ++ ++ ++ EN DI+A+Q+ + E
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPTKKHVEIL 60
Query: 120 RKSLSHYHMFWIGSD----KGQGGVGLL-TKEKPLTVKY---GIPGVSNQRGRVITAKFK 171
+ Y W S KG G L KE T+ + G P + GR+IT +F
Sbjct: 61 EELFPGYENTWRSSQEPARKGYAGTMFLYKKELTPTISFPEIGAPSTMDLEGRIITLEFD 120
Query: 172 RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLAN 231
F VY PN+G LK ++ R +WD + +Y+ +EL ++ +GD NV IDLAN
Sbjct: 121 AFFVTQVYTPNAGDGLKRLEERQVWDAKYAEYL-AELDKEKPVLATGDYNVAHNEIDLAN 179
Query: 232 PDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRL 291
P N ++ G+T EER F LL TG D FRH++ D YT+W+ R+K++++NN GWR+
Sbjct: 180 PASNRRSPGFTDEERAGFTNLLATGFTDTFRHVHGDVPERYTWWAQRSKTSKINNTGWRI 239
Query: 292 DYHLVSEQLANNIKDCIIRSDVQGST----HCPVVLRLSL 327
DY L S N I D + +SD+ S H P+VL + L
Sbjct: 240 DYWLTS----NRIADKVTKSDMIDSGARQDHTPIVLEIDL 275
>sp|P44318|EX3_HAEIN Exodeoxyribonuclease III OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=xthA PE=3 SV=1
Length = 267
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 143/270 (52%), Gaps = 28/270 (10%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
+K ++N+NGLRA + +E I+E+ PD++ LQ+I+ ++ P ++L YH+F
Sbjct: 1 MKFISFNINGLRA---RPHQLEAIIEKYQPDVIGLQEIKVADEAFPYEITENLG-YHVFH 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITA----KFKRFTFITVYVPNSGI 185
G KG GV LLTK++P ++ G P + + + R+I A +F T I Y P
Sbjct: 57 HGQ-KGHYGVALLTKQEPKVIRRGFPTDNEDAQKRIIMADLETEFGLLTVINGYFPQG-- 113
Query: 186 KLKAIDFRMIWDQHFY----DYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVK---- 237
+ +A + + + FY Y++ E ++ I+I GD+N+ +D+ D+N K
Sbjct: 114 ESRAHETKFPAKEKFYADLQQYLEKEHDKSNPILIMGDMNISPSDLDIGIGDENRKRWLR 173
Query: 238 --TAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHL 295
+ EER ++ L D GL D+FR L P ++++ +R+K +N+G R+D+ L
Sbjct: 174 TGKCSFLPEERAWYQRLYDYGLEDSFRKLNPTANDKFSWFDYRSKGFD-DNRGLRIDHIL 232
Query: 296 VSEQLANNIKDCIIRSDVQG----STHCPV 321
VS++LA D I D++ S H P+
Sbjct: 233 VSQKLAERCVDVGIALDIRAMEKPSDHAPI 262
>sp|P09030|EX3_ECOLI Exodeoxyribonuclease III OS=Escherichia coli (strain K12) GN=xthA
PE=1 SV=4
Length = 268
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 139/268 (51%), Gaps = 24/268 (8%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEEN-PDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
+K ++N+NGLRA + +E I+E++ PD++ LQ+ + +D P L Y++F+
Sbjct: 1 MKFVSFNINGLRA---RPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLG-YNVFY 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRF----TFITVYVPNSGI 185
G KG GV LLTKE P+ V+ G PG + + R+I A+ T I Y P
Sbjct: 57 HGQ-KGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGES 115
Query: 186 KLKAIDF--RMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVK------ 237
+ I F + + Q+ +Y+++EL+ ++ ++I GD+N+ +D+ ++N K
Sbjct: 116 RDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTG 175
Query: 238 TAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVS 297
+ EER L+ GLVD FRH P ++++ +R+K +N+G R+D L S
Sbjct: 176 KCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFD-DNRGLRIDLLLAS 234
Query: 298 EQLANNIK----DCIIRSDVQGSTHCPV 321
+ LA D IRS + S H PV
Sbjct: 235 QPLAECCVETGIDYEIRSMEKPSDHAPV 262
>sp|P0A1A9|EX3_SALTY Exodeoxyribonuclease III OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=xthA PE=3 SV=1
Length = 268
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 138/269 (51%), Gaps = 26/269 (9%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEEN-PDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
+K ++N+NGLRA + +E I+E++ PD++ LQ+ + ++ P L Y++F+
Sbjct: 1 MKFVSFNINGLRA---RPHQLEAIVEKHQPDVIGLQETKVHDEMFPLEEVAKLG-YNVFY 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP--GVSNQRGRVITAK----FKRFTFITVYVPNSG 184
G KG GV LLTK P++V+ G P G QR R+I A+ T I Y P
Sbjct: 57 HGQ-KGHYGVALLTKATPISVRRGFPDDGEEAQR-RIIMAEIPSPLGNITVINGYFPQGE 114
Query: 185 IKLKAIDF--RMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVK----- 237
+ + F + + Q+ +Y+++EL+ ++ ++I GD+N+ +D+ ++N K
Sbjct: 115 SRDHPLKFPAKAQFYQNLQNYLETELKCDNPVLIMGDMNISPTDLDIGIGEENRKRWLRT 174
Query: 238 -TAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLV 296
+ EER LL GLVD FR P ++++ +R+K ++N+G R+D L
Sbjct: 175 GKCSFLPEEREWMSRLLKWGLVDTFRQANPQTMDKFSWFDYRSKGF-VDNRGLRIDLLLA 233
Query: 297 SEQLANNIK----DCIIRSDVQGSTHCPV 321
S LA D IRS + S H PV
Sbjct: 234 SAPLAERCAETGIDYDIRSMEKPSDHAPV 262
>sp|P0A1B0|EX3_SALTI Exodeoxyribonuclease III OS=Salmonella typhi GN=xthA PE=3 SV=1
Length = 268
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 138/269 (51%), Gaps = 26/269 (9%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEEN-PDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
+K ++N+NGLRA + +E I+E++ PD++ LQ+ + ++ P L Y++F+
Sbjct: 1 MKFVSFNINGLRA---RPHQLEAIVEKHQPDVIGLQETKVHDEMFPLEEVAKLG-YNVFY 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIP--GVSNQRGRVITAK----FKRFTFITVYVPNSG 184
G KG GV LLTK P++V+ G P G QR R+I A+ T I Y P
Sbjct: 57 HGQ-KGHYGVALLTKATPISVRRGFPDDGEEAQR-RIIMAEIPSPLGNITVINGYFPQGE 114
Query: 185 IKLKAIDF--RMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVK----- 237
+ + F + + Q+ +Y+++EL+ ++ ++I GD+N+ +D+ ++N K
Sbjct: 115 SRDHPLKFPAKAQFYQNLQNYLETELKCDNPVLIMGDMNISPTDLDIGIGEENRKRWLRT 174
Query: 238 -TAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLV 296
+ EER LL GLVD FR P ++++ +R+K ++N+G R+D L
Sbjct: 175 GKCSFLPEEREWMSRLLKWGLVDTFRQANPQTMDKFSWFDYRSKGF-VDNRGLRIDLLLA 233
Query: 297 SEQLANNIK----DCIIRSDVQGSTHCPV 321
S LA D IRS + S H PV
Sbjct: 234 SAPLAERCAETGIDYDIRSMEKPSDHAPV 262
>sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1
Length = 523
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 134/310 (43%), Gaps = 64/310 (20%)
Query: 72 VKVSTWNVNGLRACV------KKNACVEYILEENPDIMALQQIRCQEDEVPESFR--KSL 123
+++ +WNVNG++ KKN+ E E D++ +Q+++ Q+D P+ + +
Sbjct: 1 MRILSWNVNGIQNPFNYFPWNKKNSYKEIFQELQADVICVQELKMQKDSFPQQYAVVEGF 60
Query: 124 SHYHMFWIGSDKGQGGVGLLTKEK---PLTVKYGIPGVSNQRG----------------- 163
Y F KG GVG K+ P+ + GI G+ RG
Sbjct: 61 DSYFTF-PKIRKGYSGVGFYVKKDVAIPVKAEEGITGILPVRGQKYSYSEAPEHEKIGFF 119
Query: 164 ----------------RVITAKFKRFTFITVYVP-NSGIKLKAIDFRMIWDQHFYDYIQS 206
R I F+ F I VY P NSG + R+ + + FY ++
Sbjct: 120 PKDIDRKTANWIDSEGRCILLDFQMFILIGVYCPVNSG------ENRLEYRRAFYKALRE 173
Query: 207 ELR-----SNSNIIISGDLNVCLQSIDLANPDKNVKTA--GYTVEERRNFRELLDTGLV- 258
+ N II+ GD+N+ ID A+ ++ + +E R+ R+LL +
Sbjct: 174 RIERLIKEGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSIMESRQWIRDLLLPSRLG 233
Query: 259 ---DAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQG 315
D R +P +G +T W+ R + R N G R+DY L + L ++D I ++V G
Sbjct: 234 LLLDIGRIQHPTRKGMFTCWNTR-LNTRPTNYGTRIDYTLATPDLLPWVQDADIMAEVMG 292
Query: 316 STHCPVVLRL 325
S HCPV L L
Sbjct: 293 SDHCPVYLDL 302
>sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens
GN=APEX2 PE=1 SV=1
Length = 518
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 130/319 (40%), Gaps = 70/319 (21%)
Query: 72 VKVSTWNVNGLRACVKKNA----------CVEYILEE-NPDIMALQQIRCQEDEVPESFR 120
++V +WN+NG+R ++ A V IL+E + DI+ LQ+ + D + E
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 121 KSLSHYHMFWIGSDK-GQGGVGLLTKE--KPLTVKYGIPGV-SNQRG------------- 163
+ F ++ G GV K+ P+ + G+ G+ + Q G
Sbjct: 62 IVEGYNSYFSFSRNRSGYSGVATFCKDNATPVAAEEGLSGLFATQNGDVGCYGNMDEFTQ 121
Query: 164 -------------------RVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYI 204
R K K T I VY P++ R+++ FY +
Sbjct: 122 EELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHAD---PGRPERLVFKMRFYRLL 178
Query: 205 Q----SELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGL--- 257
Q + L + S++II GDLN + ID + V + + R + + L + L
Sbjct: 179 QIRAEALLAAGSHVIILGDLNTAHRPIDHWD---AVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 258 --------VDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLA-NNIKDCI 308
+D++R P +EGA+T WS AR N G RLDY L L + +
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVT-GARHLNYGSRLDYVLGDRTLVIDTFQASF 294
Query: 309 IRSDVQGSTHCPVVLRLSL 327
+ +V GS HCPV LS+
Sbjct: 295 LLPEVMGSDHCPVGAVLSV 313
>sp|Q68G58|APEX2_MOUSE DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus
GN=Apex2 PE=1 SV=1
Length = 516
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 134/313 (42%), Gaps = 71/313 (22%)
Query: 72 VKVSTWNVNGLR------ACVKKNAC---VEYILEE-NPDIMALQQIRCQEDEVPESFRK 121
++V +WN+NG+R AC + ++C + +L+E + DI+ LQ+ + D + E
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPL-A 60
Query: 122 SLSHYHMFWIGSDKGQG--GVGLLTKEK--PLTVKYGIPGV------------------- 158
+ Y+ ++ S G GV K+ P+ + G+ GV
Sbjct: 61 IVEGYNSYFSFSRSRSGYSGVATFCKDSATPVAAEEGLSGVFATLNGDIGCYGNMDEFTQ 120
Query: 159 --------------SNQRGRVITAKFKRFTFITVYVPNSGI-KLKAIDFRMIWDQHFYDY 203
+ + R + K K T I VY P++ K + + F+M + +
Sbjct: 121 EELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQMR 180
Query: 204 IQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGL------ 257
++ L + S++II GDLN + ID + + E R+ +D L
Sbjct: 181 AEALLAAGSHVIILGDLNTAHRPID------HCDASSLECFEEDPGRKWMDGLLSNPGDE 234
Query: 258 --------VDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLA-NNIKDCI 308
+D++R+L+P ++ A+T WS + AR N G RLDY L L + +
Sbjct: 235 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVS-GARHLNYGSRLDYVLGDRALVIDTFQASF 293
Query: 309 IRSDVQGSTHCPV 321
+ +V GS HCPV
Sbjct: 294 LLPEVMGSDHCPV 306
>sp|Q5E9N9|APEX2_BOVIN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2
PE=2 SV=1
Length = 514
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 136/320 (42%), Gaps = 72/320 (22%)
Query: 72 VKVSTWNVNGLRA------CVKKNAC----VEYILEE-NPDIMALQQIRCQEDEVPESFR 120
+++ +WN+NG+R+ C + ++C + IL++ + DI+ LQ+ + D + E
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 121 KSLSHYHMFWIGSDK-GQGGVGLLTKEK--PLTVKYGIPGV-SNQRGRVIT--------- 167
+ F ++ G GV K+ P+ + G+ G+ S Q G V
Sbjct: 62 IIEGYNSYFSFSRNRSGYSGVATFCKDSATPVAAEEGLSGLLSTQNGDVGCYGNMDDFTQ 121
Query: 168 -----------------------AKFKRFTFITVYVPNSGI-KLKAIDFRMIWDQHFYDY 203
K K T I VY P++ K + + F+M FY
Sbjct: 122 EELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKM----RFYRL 177
Query: 204 IQ----SELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGL-- 257
+Q + L + S++II GDLN + ID + V + + R + + L + L
Sbjct: 178 LQIRAEALLAAGSHVIILGDLNTAHRPIDHWD---AVNMECFEEDPGRKWMDGLLSNLGC 234
Query: 258 ---------VDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLA-NNIKDC 307
+D++R P ++GA+T WS + AR N G RLDY L L + +
Sbjct: 235 ESGSHMGPFIDSYRCFQPKQKGAFTCWSTVS-GARHLNYGSRLDYVLGDRTLVIDTFQSS 293
Query: 308 IIRSDVQGSTHCPVVLRLSL 327
+ +V GS HCPV LS+
Sbjct: 294 FLLPEVMGSDHCPVGAVLSV 313
>sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1
SV=1
Length = 520
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 121/300 (40%), Gaps = 51/300 (17%)
Query: 69 TTKVKVSTWN-VNGL---------RACVKKNACVEYILEEN-PDIMALQQIRCQEDEVPE 117
T K+ +S W V+G R C I E+N P ALQ ++ +E
Sbjct: 62 TEKLSISKWGRVDGFYSFISIPQTRKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGY 121
Query: 118 SFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFK-RFTFI 176
K+ H + + +D QG G + + L K + + GR + + I
Sbjct: 122 LTIKNGKHSAISY-RNDVNQGIGGYDSLDPDLDEKSALE--LDSEGRCVMVELACGIVII 178
Query: 177 TVYVP-NSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKN 235
+VY P NS + FR+ + + +++ + I++ GD+NVC ID A+ +
Sbjct: 179 SVYCPANSNSSEEGEMFRLRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQ 238
Query: 236 VK------TAGYTVE-----------------ERRNFRELL-DTGLVDAF-RHLYPDEE- 269
G +E RR F ++L D+ L DA R + D
Sbjct: 239 FSIPITDPMGGTKLEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTR 298
Query: 270 --------GAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPV 321
YT W+ K+ R +N G R+D+ LVS +L IK I D+ GS HCPV
Sbjct: 299 LIQTRNRLKMYTVWNML-KNLRPSNYGSRIDFILVSLKLERCIKAADILPDILGSDHCPV 357
>sp|P11369|POL2_MOUSE Retrovirus-related Pol polyprotein LINE-1 OS=Mus musculus GN=Pol
PE=1 SV=2
Length = 1281
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 91/224 (40%), Gaps = 42/224 (18%)
Query: 69 TTKVKVS-------TWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRK 121
TTK+K S + N+NGL + +K++ +++ +++P LQ+ +E + + +
Sbjct: 5 TTKIKGSNNYFSLISLNINGLNSPIKRHRLTDWLHKQDPTFCCLQETHLREKD--RHYLR 62
Query: 122 SLSHYHMFWIGSDKGQGGVGLLTKEK----PLTVKYGIPGVSNQRGRVITAKFK----RF 173
+F K Q GV +L +K P +K ++ G I K K
Sbjct: 63 VKGWKTIFQANGLKKQAGVAILISDKIDFQPKVIK------KDKEGHFILIKGKILQEEL 116
Query: 174 TFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPD 233
+ + +Y PN+ +A F YI + II GD N L S D +
Sbjct: 117 SILNIYAPNA----RAATFIRDTLVKLKAYIA------PHTIIVGDFNTPLSSKDRSWKQ 166
Query: 234 K-NVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWS 276
K N T T + L D +R YP +G YT++S
Sbjct: 167 KLNRDTVKLT-------EVMKQMDLTDIYRTFYPKTKG-YTFFS 202
>sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis
PE=4 SV=1
Length = 1308
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 105/266 (39%), Gaps = 39/266 (14%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQ---EDEVPESFRKSLSHYHM 128
+ +ST N NG R + + ++ + + LQ+ E ++ + H+
Sbjct: 3 LSISTLNTNGCRNPFRMFQVLSFLRQGGYSVSFLQETHTTPELEASWNLEWKGRVFFNHL 62
Query: 129 FWIGSDKGQGGVGLLT---KEKPLTVKYGIPGVSNQRGRVITAKFKR----FTFITVYVP 181
W G V L + + + L+ IPG R++ + + + + VY P
Sbjct: 63 TWTSC----GVVTLFSDSFQPEVLSATSVIPG------RLLHLRVRESGRTYNLMNVYAP 112
Query: 182 NSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGY 241
+G + R + + Y+++ + S+ +II GD N L + D P K +
Sbjct: 113 TTGPE------RARFFESLSAYMET-IDSDEALIIGGDFNYTLDARDRNVPKKRDSSESV 165
Query: 242 TVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLA 301
E +F LVD +R P E A+TY R+ + R+D +S L
Sbjct: 166 LRELIAHF------SLVDVWREQNP-ETVAFTYVRVRDGHVSQS----RIDRIYISSHLM 214
Query: 302 NNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ + IR +C V LR+S+
Sbjct: 215 SRAQSSTIRLAPFSDHNC-VSLRMSI 239
>sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=1
SV=1
Length = 1260
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 59/220 (26%)
Query: 78 NVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHY-HMFWIGSDKG 136
NVNGL +K++ ++I + PDI +Q+ + + +R + + +F +
Sbjct: 13 NVNGLNCPLKRHRLADWIQKLKPDICCIQESHLT---LKDKYRLKVKGWSSIFQANGKQK 69
Query: 137 QGGVGLLTKE----KPLTVKYGIPGVSNQRGRVITAK----FKRFTFITVYVPNSGIKLK 188
+ G+ +L + KP ++ ++ G I K + + I +Y PN
Sbjct: 70 KAGIAILFADAIGFKPTKIR------KDKDGHFIFVKGNTQYDEISIINIYAPNHNAP-- 121
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIIS-----GDLNVCLQSIDLANPDKNVKTAGYTV 243
+I+ L SN+I S GD N L +D ++ K K
Sbjct: 122 -------------QFIRETLTDMSNLISSTSIVVGDFNTPLAVLDRSSKKKLSK------ 162
Query: 244 EERRNFRELLDTG-------LVDAFRHLYPDEEGAYTYWS 276
E+LD L D +R +P+ + YT++S
Sbjct: 163 -------EILDLNSTIQHLDLTDIYRTFHPN-KTEYTFFS 194
>sp|Q9LSD6|ARP2_ARATH Actin-related protein 2 OS=Arabidopsis thaliana GN=ARP2 PE=1 SV=1
Length = 389
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 32/136 (23%)
Query: 179 YVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKT 238
Y ++GI D +WD FY+ EL+ N + D + L L NP KN +
Sbjct: 70 YPVHNGIVQNWDDMEHVWDHAFYN----ELKINPS-----DCKILLTDPPL-NPSKNREK 119
Query: 239 AGYTVEERRNFREL--------------LDTGLV----DAFRHLYPDEEGAYTYWSFRNK 280
T+ E+ NF + L TGLV D H+ P +G +SF +
Sbjct: 120 MIETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDG----YSFPHL 175
Query: 281 SARLNNKGWRLDYHLV 296
+ R+N G + +LV
Sbjct: 176 TKRMNVAGRHITAYLV 191
>sp|B4U6U1|RIMO_HYDS0 Ribosomal protein S12 methylthiotransferase RimO
OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=rimO PE=3
SV=1
Length = 401
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 14/104 (13%)
Query: 179 YVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVK- 237
Y+ NS L D + QH D I +R D+ L+ I+ K +
Sbjct: 214 YIDNSKSVLPYFDIPL---QHISDNILKSMRRGYT---KKDVFRLLEQINAMKHKKPILR 267
Query: 238 ---TAGYTVEERRNFRELLDTGLVDAFRHL----YPDEEGAYTY 274
GY EE R+F ELLD + F + Y EEG Y Y
Sbjct: 268 SSFIVGYPTEEERDFEELLDFISQELFHFVGVFEYSHEEGTYAY 311
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,811,842
Number of Sequences: 539616
Number of extensions: 5287961
Number of successful extensions: 16219
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 16052
Number of HSP's gapped (non-prelim): 100
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)