Query psy6001
Match_columns 327
No_of_seqs 186 out of 1483
Neff 9.6
Searched_HMMs 46136
Date Sat Aug 17 00:04:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0708 XthA Exonuclease III [ 100.0 1.1E-53 2.3E-58 360.0 21.4 250 72-327 1-261 (261)
2 PRK13911 exodeoxyribonuclease 100.0 1.4E-49 3.1E-54 342.2 26.3 247 72-325 1-249 (250)
3 PRK11756 exonuclease III; Prov 100.0 4.1E-42 8.8E-47 302.0 25.7 251 72-327 1-268 (268)
4 TIGR00195 exoDNase_III exodeox 100.0 8.2E-40 1.8E-44 285.2 25.9 247 72-325 1-254 (254)
5 TIGR00633 xth exodeoxyribonucl 100.0 4.2E-39 9.2E-44 281.2 26.8 251 72-326 1-255 (255)
6 PRK05421 hypothetical protein; 99.9 8.7E-24 1.9E-28 184.6 18.9 209 69-327 41-261 (263)
7 PLN03144 Carbon catabolite rep 99.9 4.4E-23 9.6E-28 194.6 17.8 152 69-226 252-470 (606)
8 KOG1294|consensus 99.9 2.3E-21 4.9E-26 170.6 14.9 259 63-327 57-335 (335)
9 COG3568 ElsH Metal-dependent h 99.9 5.8E-21 1.3E-25 161.2 16.3 219 72-327 10-257 (259)
10 KOG2756|consensus 99.9 1.2E-21 2.7E-26 162.0 11.1 227 71-326 99-348 (349)
11 TIGR03395 sphingomy sphingomye 99.9 5.5E-20 1.2E-24 161.6 19.9 152 72-224 1-190 (283)
12 PTZ00297 pantothenate kinase; 99.8 1.6E-19 3.5E-24 186.5 22.8 241 71-327 10-314 (1452)
13 KOG2338|consensus 99.8 7E-20 1.5E-24 164.7 16.5 150 71-226 116-307 (495)
14 PRK15251 cytolethal distending 99.8 6.6E-18 1.4E-22 143.9 20.3 148 72-226 25-199 (271)
15 PF03372 Exo_endo_phos: Endonu 99.8 4.4E-19 9.6E-24 152.7 11.0 145 75-226 1-171 (249)
16 KOG3873|consensus 99.7 8.1E-17 1.8E-21 138.9 8.8 233 72-327 9-292 (422)
17 smart00476 DNaseIc deoxyribonu 99.7 3.8E-15 8.2E-20 129.3 16.7 143 72-223 18-188 (276)
18 COG5239 CCR4 mRNA deadenylase, 99.6 8.3E-16 1.8E-20 133.2 10.1 74 71-146 30-131 (378)
19 COG3021 Uncharacterized protei 99.6 2.2E-15 4.8E-20 129.7 10.5 214 72-327 89-307 (309)
20 KOG0620|consensus 99.6 7.2E-15 1.6E-19 131.9 8.0 80 71-152 19-121 (361)
21 PF14529 Exo_endo_phos_2: Endo 99.4 3.8E-13 8.2E-18 103.1 8.7 118 173-322 1-119 (119)
22 smart00128 IPPc Inositol polyp 99.4 3.3E-12 7.2E-17 113.8 13.7 149 72-225 5-195 (310)
23 COG2374 Predicted extracellula 98.9 1.8E-08 3.8E-13 95.8 13.1 209 90-327 506-788 (798)
24 KOG0566|consensus 98.5 9.1E-07 2E-11 86.0 10.9 149 72-224 539-727 (1080)
25 PLN03191 Type I inositol-1,4,5 97.7 0.00051 1.1E-08 65.2 11.1 63 162-225 409-483 (621)
26 COG5411 Phosphatidylinositol 5 96.9 0.006 1.3E-07 55.5 8.6 50 172-224 166-219 (460)
27 KOG1294|consensus 93.9 0.38 8.1E-06 43.3 8.5 149 159-325 9-162 (335)
28 PTZ00312 inositol-1,4,5-tripho 93.1 0.35 7.5E-06 42.1 6.7 57 172-228 81-145 (356)
29 PLN03191 Type I inositol-1,4,5 85.9 0.86 1.9E-05 44.0 3.7 38 71-109 109-149 (621)
30 KOG1976|consensus 79.8 3.1 6.6E-05 36.5 4.4 59 171-229 169-235 (391)
31 cd07577 Ph0642_like Pyrococcus 27.3 81 0.0018 27.1 3.8 39 72-110 2-40 (259)
32 COG5239 CCR4 mRNA deadenylase, 25.5 75 0.0016 29.0 3.1 35 193-227 157-191 (378)
33 cd02067 B12-binding B12 bindin 22.5 64 0.0014 24.0 1.9 18 91-108 42-59 (119)
34 TIGR02370 pyl_corrinoid methyl 22.2 65 0.0014 26.7 2.1 32 77-108 113-144 (197)
35 KOG0808|consensus 22.2 57 0.0012 28.2 1.7 21 90-110 104-124 (387)
36 PF01221 Dynein_light: Dynein 21.2 1.1E+02 0.0024 21.5 2.9 28 196-223 38-65 (89)
No 1
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-53 Score=359.99 Aligned_cols=250 Identities=39% Similarity=0.774 Sum_probs=228.4
Q ss_pred eEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcch-hhhcccCCeEEEEEccCCceeeEEEEEeeCcce
Q psy6001 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPE-SFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLT 150 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~-~l~~~~~gy~~~~~~~~~~~~Gvai~~k~~~~~ 150 (327)
|||+||||||++.+.+. +.+++.+.+||||||||++..+..++. .+. ..||+.++..+.++|+||||++|.++..
T Consensus 1 mkI~SwNVNgiRar~~~--~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~--~~GY~~~~~~gqKgysGVailsr~~~~~ 76 (261)
T COG0708 1 MKIASWNVNGLRARLKK--LLDWLEEEQPDVLCLQETKAQDEQFPREELE--ALGYHHVFNHGQKGYSGVAILSKKPPDD 76 (261)
T ss_pred CeeEEEehhhHHHHHHH--HHHHHHHhCCCEEEEEecccCcccCCHhHHh--hCCceEEEecCcCCcceEEEEEccCchh
Confidence 68999999999999988 999999999999999999999988887 555 7999878777779999999999999888
Q ss_pred eEeCCCCC--CCCcCcEEEEEeCcEEEEEEeccCCCC-cchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCcc
Q psy6001 151 VKYGIPGV--SNQRGRVITAKFKRFTFITVYVPNSGI-KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSI 227 (327)
Q Consensus 151 ~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~~ 227 (327)
+..+++.. .+..+|+|.+.+..+.++++|+|++.. ..+++.+|+.|++.+.+++.+....+.|+|+|||||..|.+.
T Consensus 77 v~~g~~~~~~~d~e~R~I~a~~~~~~v~~~Y~PnG~~~~~~k~~yKl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~i 156 (261)
T COG0708 77 VRRGFPGEEEDDEEGRVIEAEFDGFRVINLYFPNGSSIGLEKFDYKLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEI 156 (261)
T ss_pred hhcCCCCCccccccCcEEEEEECCEEEEEEEcCCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCEEEecccccCCchh
Confidence 88888873 567899999999999999999999998 888899999999999999995556779999999999999999
Q ss_pred cccCCC---CCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhccc
Q psy6001 228 DLANPD---KNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304 (327)
Q Consensus 228 d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~ 304 (327)
|+.++. .+.+..++.++++++|..+++.|++|++|.++|.... ||||+++. +....+.|+||||+++|+.+...+
T Consensus 157 Dv~~~~~~~~n~~~~~f~~eeR~~~~~ll~~G~~D~~R~~~p~~~~-YTwW~YR~-~~~~~n~G~RID~~l~S~~L~~~~ 234 (261)
T COG0708 157 DVANPKKRWLNEGNSGFLPEERAWFRRLLNAGFVDTFRLFHPEPEK-YTWWDYRA-NAARRNRGWRIDYILVSPALADRL 234 (261)
T ss_pred cccCchhhhhcCCCCCCCHHHHHHHHHHHHcchhhhhHhhCCCCCc-cccccccc-chhhhcCceeEEEEEeCHHHHHHH
Confidence 999996 5689999999999999999999999999999999776 99999999 655556999999999999999999
Q ss_pred ceeeeccCCCC----CCCcceEEEEeC
Q psy6001 305 KDCIIRSDVQG----STHCPVVLRLSL 327 (327)
Q Consensus 305 ~~~~~~~~~~~----SDH~pV~~~~~l 327 (327)
.++.+..+.++ |||+||+++|++
T Consensus 235 ~~a~I~~~~rg~e~pSDHaPV~~e~~~ 261 (261)
T COG0708 235 KDAGIDREVRGWEKPSDHAPVWVELDL 261 (261)
T ss_pred HhcCccHHHhcCCCCCCcCcEEEEecC
Confidence 99999887776 999999999975
No 2
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=100.00 E-value=1.4e-49 Score=342.21 Aligned_cols=247 Identities=43% Similarity=0.826 Sum_probs=221.2
Q ss_pred eEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccC-CceeeEEEEEeeCcce
Q psy6001 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSD-KGQGGVGLLTKEKPLT 150 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~-~~~~Gvai~~k~~~~~ 150 (327)
|||+||||+|+....+++ +.++|++++||||||||++.....+. +. ..||+.++.... ++|+||||++|.++..
T Consensus 1 mki~swNVNgir~~~~~~-~~~~l~~~~~DIiclQEtK~~~~~~~--~~--~~gY~~~~~~~~~kgy~GVAi~~k~~~~~ 75 (250)
T PRK13911 1 MKLISWNVNGLRACMTKG-FMDFFNSVDADVFCIQESKMQQEQNT--FE--FKGYFDFWNCAIKKGYSGVVTFTKKEPLS 75 (250)
T ss_pred CEEEEEEeCChhHhhhhh-HHHHHHhcCCCEEEEEeecccccccc--cc--cCCceEEEEecccCccceEEEEEcCCchh
Confidence 689999999999887655 99999999999999999997776653 44 689988886544 4899999999998888
Q ss_pred eEeCCCCC-CCCcCcEEEEEeCcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCcccc
Q psy6001 151 VKYGIPGV-SNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDL 229 (327)
Q Consensus 151 ~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~~d~ 229 (327)
+..+++.+ .+..||+|.++++.++++++|+|++....+++++|+.|++.+.+++. .+....++|+|||||..+.+.|.
T Consensus 76 v~~~~~~~~~d~eGR~I~~~~~~~~l~nvY~Pn~~~~~~r~~~K~~~~~~~~~~l~-~l~~~~~~Ii~GD~Nva~~~~D~ 154 (250)
T PRK13911 76 VSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK-ALELKKPVIVCGDLNVAHNEIDL 154 (250)
T ss_pred eEEcCCCCcccccCCEEEEEECCEEEEEEEecCCCCCCcchHHHHHHHHHHHHHHH-hcccCCCEEEEccccCCCChhhc
Confidence 88888765 67889999999999999999999998888899999999999999999 56666799999999999999999
Q ss_pred cCCCCCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhcccceeee
Q psy6001 230 ANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCII 309 (327)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~~~~ 309 (327)
.++..+.+..+++++++++|..+++.|++|++|.++|...+.||||+++. +++..+.++||||||+|+.+...+.++.+
T Consensus 155 ~~~~~~~~~~gf~~~er~~f~~~l~~gl~D~~R~~~p~~~~~yTww~~~~-~~~~~n~g~RIDyilvs~~~~~~~~~~~i 233 (250)
T PRK13911 155 ENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYPNKEKAYTWWSYMQ-QARDKNIGWRIDYFLCSNPLKTRLKDALI 233 (250)
T ss_pred cChhhcCCCCCcCHHHHHHHHHHHhcCCeehhhhhCCCCCCCCccCCCcC-CccccCCcceEEEEEEChHHhhhEEEEEE
Confidence 99988888899999999999999999999999999998656699999988 77778999999999999999999888888
Q ss_pred ccCCCCCCCcceEEEE
Q psy6001 310 RSDVQGSTHCPVVLRL 325 (327)
Q Consensus 310 ~~~~~~SDH~pV~~~~ 325 (327)
.....+|||+||.++|
T Consensus 234 ~~~~~~SDH~Pv~~~~ 249 (250)
T PRK13911 234 YKDILGSDHCPVGLEL 249 (250)
T ss_pred CCCCCCCCcccEEEEe
Confidence 8777789999999987
No 3
>PRK11756 exonuclease III; Provisional
Probab=100.00 E-value=4.1e-42 Score=302.00 Aligned_cols=251 Identities=29% Similarity=0.533 Sum_probs=198.4
Q ss_pred eEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccCCceeeEEEEEeeCccee
Q psy6001 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLTV 151 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~~~~~Gvai~~k~~~~~~ 151 (327)
|||+||||+++...... +.++|++.+|||||||||+.....+...+.. ..||+.++. +..+++|+||++|.++...
T Consensus 1 mri~T~Nv~g~~~~~~~--i~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~-~~gy~~~~~-~~~~~~GvailSr~p~~~~ 76 (268)
T PRK11756 1 MKFVSFNINGLRARPHQ--LEAIIEKHQPDVIGLQETKVHDEMFPLEEVE-ALGYHVFYH-GQKGHYGVALLSKQTPIAV 76 (268)
T ss_pred CEEEEEEcCCHHHHHHH--HHHHHHhcCCCEEEEEecccccccCCHHHHH-hcCCEEEEe-CCCCCCEEEEEECCChHHe
Confidence 68999999998765544 9999999999999999998665544332222 689987765 3457789999999998776
Q ss_pred EeCCCCC-CCCcCcEEEEEeC----cEEEEEEeccCCCC--cchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy6001 152 KYGIPGV-SNQRGRVITAKFK----RFTFITVYVPNSGI--KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCL 224 (327)
Q Consensus 152 ~~~~~~~-~~~~~~~i~~~~~----~~~~~~~~~~~~~~--~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~ 224 (327)
...++.. ....++++.+.+. .+.++++|+|++.. ...+.+.|+.|++.|.+++.+......|+|+|||||+.|
T Consensus 77 ~~~~~~~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~pvIl~GDfN~~~ 156 (268)
T PRK11756 77 RKGFPTDDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETELSPDNPLLIMGDMNISP 156 (268)
T ss_pred EECCCCccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHHhccCCCEEEEeecccCC
Confidence 6655443 3456788877663 59999999998754 234556788899999999983346678999999999999
Q ss_pred CcccccCCCCC------cccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCc
Q psy6001 225 QSIDLANPDKN------VKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSE 298 (327)
Q Consensus 225 ~~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~ 298 (327)
++.|+.++..+ .+..++.+++++++..+++.||+|+|+.++|.....||||+++. ..++.+.++||||||+++
T Consensus 157 ~~~D~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~l~D~~R~~~p~~~~~~T~~~~~~-~~~~~~~g~RIDyi~~s~ 235 (268)
T PRK11756 157 TDLDIGIGEENRKRWLRTGKCSFLPEEREWLDRLMDWGLVDTFRQLNPDVNDRFSWFDYRS-KGFDDNRGLRIDLILATQ 235 (268)
T ss_pred ChhhcCCcccChHHhcccCCccCCHHHHHHHHHHHhCCcEeehhhhCCCCCCcccCcCCcc-cccccCCceEEEEEEeCH
Confidence 99888654332 23456789999999999888999999999997444599999988 666667899999999999
Q ss_pred chhcccceeeeccCC----CCCCCcceEEEEeC
Q psy6001 299 QLANNIKDCIIRSDV----QGSTHCPVVLRLSL 327 (327)
Q Consensus 299 ~~~~~~~~~~~~~~~----~~SDH~pV~~~~~l 327 (327)
.+...+.++.+.... .+|||+||+++|++
T Consensus 236 ~~~~~v~~~~i~~~~~~~~~~SDH~PV~~~~~~ 268 (268)
T PRK11756 236 PLAERCVETGIDYDIRGMEKPSDHAPIWATFKL 268 (268)
T ss_pred HHHhhheEeEEeHHHhCCCCCCCcccEEEEEeC
Confidence 999888888876543 36999999999975
No 4
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=100.00 E-value=8.2e-40 Score=285.22 Aligned_cols=247 Identities=39% Similarity=0.779 Sum_probs=202.1
Q ss_pred eEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccCCceeeEEEEEeeCccee
Q psy6001 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLTV 151 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~~~~~Gvai~~k~~~~~~ 151 (327)
|||+||||+|+....++ +.++|+.++||||||||++.....+...+.. ..||..++... .++.|+||++|..++.+
T Consensus 1 mri~t~Ni~g~~~~~~~--~~~~l~~~~~DIi~LQE~~~~~~~~~~~~~~-~~g~~~~~~~~-~g~~Gvailsr~~~~~~ 76 (254)
T TIGR00195 1 MKIISWNVNGLRARLHK--GLAWLKENQPDVLCLQETKVQDEQFPLEPFH-KEGYHVFFSGQ-KGYSGVAIFSKEEPLSV 76 (254)
T ss_pred CEEEEEEcCcHHHhHHH--HHHHHHhcCCCEEEEEecccchhhCCHHHhh-cCCcEEEEecC-CCcceEEEEEcCCcceE
Confidence 68999999998876655 8999999999999999998655444443432 68998777654 56789999999777776
Q ss_pred EeCCCCC-CCCcCcEEEEEeCcEEEEEEeccCCC-CcchhhHHHHHHHHHHHHHHHHHh-cCCCcEEEEccCCCCCCccc
Q psy6001 152 KYGIPGV-SNQRGRVITAKFKRFTFITVYVPNSG-IKLKAIDFRMIWDQHFYDYIQSEL-RSNSNIIISGDLNVCLQSID 228 (327)
Q Consensus 152 ~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~l~~~l~~~~-~~~~~~Ii~GDFN~~~~~~d 228 (327)
..+++.. .+..+|++.+++..+.++++|+|+.. ...++..+|..+++.+.+.+. .+ ....|+|+|||||..+.+.|
T Consensus 77 ~~~~~~~~~~~~~r~i~~~~~~~~l~~~~~p~~~~~~~~~~~~r~~~~~~l~~~~~-~~~~~~~pvIi~GDfN~~~~~~d 155 (254)
T TIGR00195 77 RRGFGVEEEDAEGRIIMAEFDSFLVINGYFPNGSRDDSEKLPYKLQWLEALQNYLE-KLVDKDKPVLICGDMNIAPTEID 155 (254)
T ss_pred EECCCCcccccCCCEEEEEECCEEEEEEEccCCCCCCCccHHHHHHHHHHHHHHHH-HHHhcCCcEEEEeecccCCChhh
Confidence 6555444 56788999999999999999999953 345567789999999999998 44 45689999999999999998
Q ss_pred ccCCCCCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhcccceee
Q psy6001 229 LANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308 (327)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~~~ 308 (327)
..++.......++.+.++..+..+++.|+.|+|+..++... .||||+++. ..+..+.++||||||+++++...+.++.
T Consensus 156 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~l~D~~r~~~~~~~-~~T~~~~~~-~~~~~~~g~RID~i~~s~~~~~~v~~~~ 233 (254)
T TIGR00195 156 LHSPDENRNHTGFLPEEREWLDRLLEAGLVDTFRKFNPDEG-AYSWWDYRT-KARDRNRGWRIDYFLVSEPLKERCVDCG 233 (254)
T ss_pred ccChhhcCCCcCcChHHHHHHHHHHHcCCEeeecccCCCCC-CCcccCCcC-CccccCCceEEEEEEECHHHHhhhhEEE
Confidence 88777777777889999999999998899999999888744 599999877 5555577889999999999998888888
Q ss_pred eccC----CCCCCCcceEEEE
Q psy6001 309 IRSD----VQGSTHCPVVLRL 325 (327)
Q Consensus 309 ~~~~----~~~SDH~pV~~~~ 325 (327)
+... ..+|||+||+++|
T Consensus 234 i~~~~~~~~~~SDH~Pv~~~~ 254 (254)
T TIGR00195 234 IDYDIRGSEKPSDHCPVVLEF 254 (254)
T ss_pred EcHHHhcCCCCCCcccEEEeC
Confidence 8652 2358999999975
No 5
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.2e-39 Score=281.19 Aligned_cols=251 Identities=45% Similarity=0.888 Sum_probs=200.1
Q ss_pred eEEEEEEcCCchhhhhhhhH-HHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccCC-ceeeEEEEEeeCcc
Q psy6001 72 VKVSTWNVNGLRACVKKNAC-VEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK-GQGGVGLLTKEKPL 149 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~~~i-~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~~-~~~Gvai~~k~~~~ 149 (327)
|||+||||+++....++ + .++|+.++||||||||++.....+...+.. ..||..++..... +++|+||++|.++.
T Consensus 1 lri~t~Nv~g~~~~~~~--~~~~~l~~~~~DIv~LQE~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~G~ailsr~~~~ 77 (255)
T TIGR00633 1 MKIISWNVNGLRARLHK--LFLDWLKEEQPDVLCLQETKVADEQFPAELFE-ELGYHVFFHGAKSKGYSGVAILSKVEPL 77 (255)
T ss_pred CEEEEEecccHHHHhhc--cHHHHHHhcCCCEEEEEeccCchhhCCHhHhc-cCCceEEEeecccCCcceEEEEEcCCcc
Confidence 68999999999876665 6 999999999999999998654333332322 6899877765553 67899999999877
Q ss_pred eeEeCCCCC-CCCcCcEEEEEeCcEEEEEEeccCCCC-cchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCcc
Q psy6001 150 TVKYGIPGV-SNQRGRVITAKFKRFTFITVYVPNSGI-KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSI 227 (327)
Q Consensus 150 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~~ 227 (327)
....+++.. .+..+|.+.+.+..+.++++|+|+... ..+++++|..+++.+.+.+.+.+....|+|+|||||+.+...
T Consensus 78 ~~~~~~~~~~~~~~~r~l~~~~~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~ 157 (255)
T TIGR00633 78 DVRYGFGGEEHDEEGRVITAEFDGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYEKELDAGKPVIICGDMNVAHTEI 157 (255)
T ss_pred eEEECCCCCcccCCCcEEEEEECCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccCCChH
Confidence 766555444 566778888888999999999998763 445667788888888887763445678999999999999888
Q ss_pred cccCCCCCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhccccee
Q psy6001 228 DLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307 (327)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~~ 307 (327)
|..++..+....++.+.++..|..+++.|+.|+|+..++.....||||+.+. .....+.+.||||||+++.+...+..+
T Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~T~~~~~~-~~~~~~~~~rID~i~~s~~~~~~~~~~ 236 (255)
T TIGR00633 158 DLGNPKENKGNAGFTPEEREWFDELLEAGLVDTFRHFNPDTEGAYTWWDYRS-GARDRNRGWRIDYFLVSEPLAERVVDS 236 (255)
T ss_pred HccChhhcCCCCCcCHHHHHHHHHHHHcCCEecchhhCCCCCCcCcCcCCcc-CccccCCceEEEEEEECHHHHhhhcEe
Confidence 8776666666667788888899999999999999998887654699998876 444456778999999999998778888
Q ss_pred eeccCCCCCCCcceEEEEe
Q psy6001 308 IIRSDVQGSTHCPVVLRLS 326 (327)
Q Consensus 308 ~~~~~~~~SDH~pV~~~~~ 326 (327)
.+.....+|||+||+++|+
T Consensus 237 ~i~~~~~~SDH~pv~~~~~ 255 (255)
T TIGR00633 237 YIDSEIRGSDHCPIVLELD 255 (255)
T ss_pred EECCCCCCCCcccEEEEEC
Confidence 8876666799999999874
No 6
>PRK05421 hypothetical protein; Provisional
Probab=99.92 E-value=8.7e-24 Score=184.60 Aligned_cols=209 Identities=15% Similarity=0.228 Sum_probs=124.8
Q ss_pred CCceEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEc--c-CCceeeEEEEEe
Q psy6001 69 TTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG--S-DKGQGGVGLLTK 145 (327)
Q Consensus 69 ~~~l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~--~-~~~~~Gvai~~k 145 (327)
++.|+|+||||++........ .++.+ ..+|||||||||+.... ... +.. ..||+..+.. . .++++|+||++|
T Consensus 41 ~~~lri~t~NI~~~~~~~~~~-~l~~l-~~~~DiI~LQEv~~~~~-~~~-~~~-~~~~~~~~~~~~~~~~~~~GvaiLSR 115 (263)
T PRK05421 41 EERLRLLVWNIYKQQRAGWLS-VLKNL-GKDADLVLLQEAQTTPE-LVQ-FAT-ANYLAADQAPAFVLPQHPSGVMTLSK 115 (263)
T ss_pred CCceeEEEEEccccccccHHH-HHHHh-ccCCCEEEEEecccCcc-hHH-Hhh-cccchHHhccccccCCCccceeEeee
Confidence 345999999999887553322 55555 88999999999975432 112 321 3445433322 2 236789999999
Q ss_pred eCcceeEeCCCCC---CCCcCcEEEEE--e---CcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q psy6001 146 EKPLTVKYGIPGV---SNQRGRVITAK--F---KRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIIS 217 (327)
Q Consensus 146 ~~~~~~~~~~~~~---~~~~~~~i~~~--~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~ 217 (327)
.++...... +.. .......+.++ . ..+.++++|+.+..... ..|..|++.+.+.+. ....|+|+|
T Consensus 116 ~pi~~~~~~-~~~~~~~~~~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~---~~r~~q~~~l~~~~~---~~~~p~Il~ 188 (263)
T PRK05421 116 AHPVYCCPL-REREPWLRLPKSALITEYPLPNGRTLLVVNIHAINFSLGV---DVYSKQLEPIGDQIA---HHSGPVILA 188 (263)
T ss_pred cccceeecc-CCCCccccCcceeEEEEEEeCCCCEEEEEEECccccCcCh---HHHHHHHHHHHHHHH---hCCCCEEEE
Confidence 997664331 111 11122233333 3 23899999997643322 346788888888887 346799999
Q ss_pred ccCCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhcC-CceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEe
Q psy6001 218 GDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLV 296 (327)
Q Consensus 218 GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~ 296 (327)
||||+.+.. ....+..+.+. |+.+.. |..... . .....+|||||+
T Consensus 189 GDFN~~~~~------------------~~~~l~~~~~~~~l~~~~------------~~~~~~-~---~~~~~~ID~I~~ 234 (263)
T PRK05421 189 GDFNTWSRK------------------RMNALKRFARELGLKEVR------------FTDDQR-R---RAFGRPLDFVFY 234 (263)
T ss_pred cccccCccc------------------chHHHHHHHHHcCCCccC------------cCCccc-c---cccCCCcceEEE
Confidence 999984210 01233334433 454421 110000 0 012458999998
Q ss_pred CcchhcccceeeeccCCCCCCCcceEEEEeC
Q psy6001 297 SEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327 (327)
Q Consensus 297 s~~~~~~~~~~~~~~~~~~SDH~pV~~~~~l 327 (327)
+ ++ .+.++.+. ....|||+||+++|++
T Consensus 235 ~-~~--~v~~~~v~-~~~~SDH~Pv~a~l~l 261 (263)
T PRK05421 235 R-GL--NVSKASVL-VTRASDHNPLLVEFSL 261 (263)
T ss_pred C-Cc--EEEEEEcC-CCCCCCccCEEEEEEe
Confidence 5 33 44556665 3457999999999975
No 7
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.90 E-value=4.4e-23 Score=194.58 Aligned_cols=152 Identities=11% Similarity=0.185 Sum_probs=103.1
Q ss_pred CCceEEEEEEcCC----------------chhhhhhhhHHHHHHhcCCCEEEEeeeecCC--CCcchhhhcccCCeEEEE
Q psy6001 69 TTKVKVSTWNVNG----------------LRACVKKNACVEYILEENPDIMALQQIRCQE--DEVPESFRKSLSHYHMFW 130 (327)
Q Consensus 69 ~~~l~i~s~Ni~~----------------~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~--~~~~~~l~~~~~gy~~~~ 130 (327)
..+|+||||||.. +.+..|+..|+++|..++||||||||+.... +.+...|. ..||..++
T Consensus 252 ~~~frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~~d~~~p~L~--~~GY~Gv~ 329 (606)
T PLN03144 252 AGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHFEEFFAPELD--KHGYQALY 329 (606)
T ss_pred CCCEEEEEeeeccccccCcccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHHHHHHHhhhh--hcCceEEE
Confidence 3359999999962 4466677789999999999999999996332 22233566 68998888
Q ss_pred EccCC--------ceeeEEEEEeeCcceeEeCCCCC-----------C---------------CCcCcEEEEEeC-----
Q psy6001 131 IGSDK--------GQGGVGLLTKEKPLTVKYGIPGV-----------S---------------NQRGRVITAKFK----- 171 (327)
Q Consensus 131 ~~~~~--------~~~Gvai~~k~~~~~~~~~~~~~-----------~---------------~~~~~~i~~~~~----- 171 (327)
....+ +..|+|||+|...|++.....++ . +..+.++.++..
T Consensus 330 ~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~~l~Rl~kdNVAliv~Le~k~~~~~ 409 (606)
T PLN03144 330 KKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLKDNVALIVVLEAKFGNQG 409 (606)
T ss_pred eCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchhhhhhhccCcEEEEEEEEEeccccc
Confidence 75421 35799999999988865421110 0 001123333332
Q ss_pred --------cEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHh--cCCCcEEEEccCCCCCCc
Q psy6001 172 --------RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSEL--RSNSNIIISGDLNVCLQS 226 (327)
Q Consensus 172 --------~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~--~~~~~~Ii~GDFN~~~~~ 226 (327)
.+.++++|+-... ...+.|+.|+..|.+.++ .+ ..+.|+|||||||+.|+.
T Consensus 410 ~~~~~~~~~l~VaNTHL~~~p---~~~dvRl~Q~~~Ll~~l~-~~~~~~~~PvIlcGDFNS~P~S 470 (606)
T PLN03144 410 ADNGGKRQLLCVANTHIHANQ---ELKDVKLWQVHTLLKGLE-KIAASADIPMLVCGDFNSVPGS 470 (606)
T ss_pred ccCCCCccEEEEEEeeeccCC---ccchhHHHHHHHHHHHHH-HHhhcCCCceEEeccCCCCCCC
Confidence 2778888883222 222457788888888887 44 357899999999999876
No 8
>KOG1294|consensus
Probab=99.87 E-value=2.3e-21 Score=170.65 Aligned_cols=259 Identities=36% Similarity=0.599 Sum_probs=211.0
Q ss_pred CCCCCCCCceEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCe-EEEEEccCC--ceee
Q psy6001 63 GSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHY-HMFWIGSDK--GQGG 139 (327)
Q Consensus 63 ~~~~~~~~~l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy-~~~~~~~~~--~~~G 139 (327)
..++... +.|+.||+.++....+.. -..++.....|++|+||+............. ..|| +.++..+.+ ++.|
T Consensus 57 ~~g~~~~--~~i~~~~i~~~~~~~~~~-~~~~~~~~l~d~~~~~~t~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~ 132 (335)
T KOG1294|consen 57 KQGNRKV--LNICPWDIAGLEACEKFS-GDPEISSELRDLQCLLETKCTIDSGPCSHPT-EKGYTHSLLSCASKKDGYSG 132 (335)
T ss_pred HhCCeeE--eecCchhhhhhhhhhccc-cchhccccchhhhhhhhccceeccCcceecc-cCCcccceeecccccCCccc
Confidence 3445545 789999999998877766 6778888899999999998664433332222 6788 677776554 7889
Q ss_pred EEEEEeeCcceeEeCCC--CC-CCCcCcEEEEEeCcEEEEEEeccCCCCcchhhHHH--HHHHHHHHHHHHHHh----cC
Q psy6001 140 VGLLTKEKPLTVKYGIP--GV-SNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFR--MIWDQHFYDYIQSEL----RS 210 (327)
Q Consensus 140 vai~~k~~~~~~~~~~~--~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~l~~~l~~~~----~~ 210 (327)
++.+++..+..+..++. .. +...++++.+++..+.+++.|+|+.......++++ ..+-..+...+. .. ..
T Consensus 133 ~~~~~~~~p~~v~~~~~~~~s~h~~~g~~i~~e~e~~~l~~~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~ 211 (335)
T KOG1294|consen 133 EIDYSKFKPLKVHYGFGAMGSDHRPVGRVIIAEFEIFILINTYVPNIGGGLVNLVYRILDRWDKEIEEKRK-KQSSSKNL 211 (335)
T ss_pred eeeeeecccceeeecccccCCccCccceEEEEeecceeeccccCcccccccchhhhhhhhhhHHHHHHHhh-hccccccc
Confidence 99999998888888776 44 88899999999999999999999998877766666 455556666555 33 22
Q ss_pred CCcEEEEccCCCCCCccc----ccCCCCCc-ccCCCCHHHHHHH-HHHhcCC-ceeeEeccCCCCCCCccccCCCCCCcc
Q psy6001 211 NSNIIISGDLNVCLQSID----LANPDKNV-KTAGYTVEERRNF-RELLDTG-LVDAFRHLYPDEEGAYTYWSFRNKSAR 283 (327)
Q Consensus 211 ~~~~Ii~GDFN~~~~~~d----~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~-l~d~~~~~~~~~~~~~t~~~~~~~~~~ 283 (327)
..+++.|||.|..+...+ ..++..+. ...+++++++..+ ..+++.| +.|+++..++.....||+|.+.. ..+
T Consensus 212 ~~~~v~~gd~nvs~~~i~~~~~~~~~~~~~~~~~~~t~e~R~~~~~~~~~~~~~iDt~r~~~~~~~~~~t~Wk~~~-~~r 290 (335)
T KOG1294|consen 212 KAPVVICGDLNVSHEEIDPSKPLVSPAGNTLSNAGFTPEERDSFFAELLEKGPLIDTYRELHKDQKKAYTFWKYMP-NGR 290 (335)
T ss_pred cCcceeccccccchhhccccccccccccCCcCCCCCCHHHhhhHHHhhccCCcceeehhhhcCCccccccchhhcc-ccc
Confidence 358999999999999988 45555555 7788999999999 6888887 99999999999886699999988 888
Q ss_pred CCCccceeEEEEeCcchhcccceeeeccC-CCCCCCcceEEEEeC
Q psy6001 284 LNNKGWRLDYHLVSEQLANNIKDCIIRSD-VQGSTHCPVVLRLSL 327 (327)
Q Consensus 284 ~~~~~~riD~il~s~~~~~~~~~~~~~~~-~~~SDH~pV~~~~~l 327 (327)
.++.++|+||++|+....+...++.+... ..+|||+||.+.|.+
T Consensus 291 ~~~~~~r~dy~~Vsk~~~n~~r~~~Ic~r~~~gsdh~pi~~~~~~ 335 (335)
T KOG1294|consen 291 QRGHGERCDYILVSKPGPNNGRRFYICSRPIHGSDHCPITLEFFL 335 (335)
T ss_pred cCCCCCceeEEEecCcCCCCCceeeeecCccCCCCCCCeeeeecC
Confidence 88999999999999999999999999987 789999999999864
No 9
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.87 E-value=5.8e-21 Score=161.24 Aligned_cols=219 Identities=24% Similarity=0.275 Sum_probs=127.1
Q ss_pred eEEEEEEcCCc----hhhhhhhhHHHHHHhcCCCEEEEeeeecCC----CCcch---hhhcccCCeEEEEEc------cC
Q psy6001 72 VKVSTWNVNGL----RACVKKNACVEYILEENPDIMALQQIRCQE----DEVPE---SFRKSLSHYHMFWIG------SD 134 (327)
Q Consensus 72 l~i~s~Ni~~~----~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~----~~~~~---~l~~~~~gy~~~~~~------~~ 134 (327)
++|+||||... +......++.+.|.+..+||+||||+.... ..+.. .+.+ ..+.+.++.. ..
T Consensus 10 ~~v~TyNih~~~~~~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~ 88 (259)
T COG3568 10 FKVLTYNIHKGFGAFDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGR-LGLAPYWWSGAAFGAVYG 88 (259)
T ss_pred eEEEEEEEEEccCccCceecHHHHHHHHHhhccCeeeeecccccccccccccchhHHHHHH-hcCCccccchhhhhhhcc
Confidence 89999999543 444555679999999999999999998421 11111 1121 2222222222 12
Q ss_pred CceeeEEEEEeeCcceeEe-CCCCC--CCCcCc-EEEEEe---CcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHH
Q psy6001 135 KGQGGVGLLTKEKPLTVKY-GIPGV--SNQRGR-VITAKF---KRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSE 207 (327)
Q Consensus 135 ~~~~Gvai~~k~~~~~~~~-~~~~~--~~~~~~-~i~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~ 207 (327)
.+.+|+||+++.+...+.. .++.. ....+. +..++. +.+.++++|+.-.. +.|..|++.|.+.+.
T Consensus 89 ~~~~GnaiLS~~pi~~v~~~~lp~~~~~~~Rgal~a~~~~~~g~~l~V~~~HL~l~~------~~R~~Q~~~L~~~~~-- 160 (259)
T COG3568 89 EGQHGNAILSRLPIRDVENLALPDPTGLEPRGALLAEIELPGGKPLRVINAHLGLSE------ESRLRQAAALLALAG-- 160 (259)
T ss_pred cceeeeEEEecCcccchhhccCCCCCCCCCceeEEEEEEcCCCCEEEEEEEeccccH------HHHHHHHHHHHhhcc--
Confidence 2678999999877554322 22221 122222 223333 26899999986322 247788888887432
Q ss_pred hcCCCcEEEEccCCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhc--CCceeeEeccCCCCCCCccccCCCCCCccCC
Q psy6001 208 LRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLD--TGLVDAFRHLYPDEEGAYTYWSFRNKSARLN 285 (327)
Q Consensus 208 ~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~ 285 (327)
+....|+|+|||||..++..+..-.... .+. .++.+++....+.+. .||.+..
T Consensus 161 l~~~~p~vl~GDFN~~p~s~~yr~~~~~----------------~~~~~~~~~~~~~~a~~~~~--~tfps~~------- 215 (259)
T COG3568 161 LPALNPTVLMGDFNNEPGSAEYRLAARS----------------PLNAQAALTGAFAPAVGRTI--RTFPSNT------- 215 (259)
T ss_pred CcccCceEEEccCCCCCCCccceeccCC----------------chhhccccccccCcccCccc--CCCCCCC-------
Confidence 2344499999999998766543111110 111 134444444333211 2332222
Q ss_pred CccceeEEEEeCcchhcccceeeeccCC---CCCCCcceEEEEeC
Q psy6001 286 NKGWRLDYHLVSEQLANNIKDCIIRSDV---QGSTHCPVVLRLSL 327 (327)
Q Consensus 286 ~~~~riD~il~s~~~~~~~~~~~~~~~~---~~SDH~pV~~~~~l 327 (327)
...+|||||+++.+... .+.+..+. ..|||+||.+++++
T Consensus 216 -p~lriD~Ifvs~~~~i~--~~~v~~~~~a~~aSDHlPl~aeL~~ 257 (259)
T COG3568 216 -PLLRLDRIFVSKELAIR--SVHVLTDRLARVASDHLPLLAELRL 257 (259)
T ss_pred -ccccccEEEecCcccEE--EEEeecCCCccccccccceEEEEec
Confidence 23379999999987655 44444433 37999999999874
No 10
>KOG2756|consensus
Probab=99.86 E-value=1.2e-21 Score=161.97 Aligned_cols=227 Identities=18% Similarity=0.199 Sum_probs=141.1
Q ss_pred ceEEEEEEcCCchhh---hhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccCCceeeEEEEEeeC
Q psy6001 71 KVKVSTWNVNGLRAC---VKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEK 147 (327)
Q Consensus 71 ~l~i~s~Ni~~~~~~---~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~~~~~Gvai~~k~~ 147 (327)
.+.+++||+.++... .+..++.++|+.++|||||||||....... +.+ ...|...++....++.|.+++.+..
T Consensus 99 ~~S~~~WnidgLdln~l~~RMrAv~H~i~l~sPdiiflQEV~p~~y~~---~~K-~~s~y~i~~~~~~~~~~~~~l~~s~ 174 (349)
T KOG2756|consen 99 MFSLITWNIDGLDLNNLSERMRAVCHYLALYSPDVIFLQEVIPPYYSY---LKK-RSSNYEIITGHEEGYFTAIMLKKSR 174 (349)
T ss_pred EEEEEEeeccccccchHHHHHHHHHHHHHhcCCCEEEEeecCchhhHH---HHH-hhhheeEEEeccceeeeeeeeehhh
Confidence 488999999998765 566669999999999999999996444322 333 4444444454555556655544433
Q ss_pred -cceeEeCCCCCCCCcCcEEE---EEeC--cEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHh--cCCCcEEEEcc
Q psy6001 148 -PLTVKYGIPGVSNQRGRVIT---AKFK--RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSEL--RSNSNIIISGD 219 (327)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~i~---~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~--~~~~~~Ii~GD 219 (327)
.++....+++....++|.+. ++++ .+.+++.|+.++..... +|++|.....+.++..+ .++..||++||
T Consensus 175 ~~Vks~~~i~F~NS~M~R~L~I~Ev~v~G~Kl~l~tsHLEStr~h~P---~r~~qF~~~~~k~~EaIe~lPnA~ViFGGD 251 (349)
T KOG2756|consen 175 VKVKSQEIIPFPNSKMMRNLLIVEVNVSGNKLCLMTSHLESTRGHAP---ERMNQFKMVLKKMQEAIESLPNATVIFGGD 251 (349)
T ss_pred cCccccceeccCcchhhheeEEEEEeecCceEEEEeccccCCCCCCh---HHHHHHHHHHHHHHHHHHhCCCceEEEcCc
Confidence 12223334444455555543 3443 47788888877655432 35555544444433111 58899999999
Q ss_pred CCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCCCCCCccCCC--ccceeEEEEeC
Q psy6001 220 LNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNN--KGWRLDYHLVS 297 (327)
Q Consensus 220 FN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~riD~il~s 297 (327)
+|......+.+. +..+++|+|..+..+....|||.+..+ .+..+. ...|+|+||..
T Consensus 252 ~NlrD~ev~r~~---------------------lPD~~vDvWE~lg~p~~~~FTwDT~~N-~nl~G~~a~k~RfDRi~~r 309 (349)
T KOG2756|consen 252 TNLRDREVTRCG---------------------LPDNIVDVWEFLGKPKHCQFTWDTQMN-SNLGGTAACKLRFDRIFFR 309 (349)
T ss_pred ccchhhhcccCC---------------------CCchHHHHHHHhCCCCcCceeeecccC-cccchhHHHHHHHHHHhhh
Confidence 999754433322 223688999999855555699998888 555443 34499999984
Q ss_pred cchhcc---cceeeecc-------CCCCCCCcceEEEEe
Q psy6001 298 EQLANN---IKDCIIRS-------DVQGSTHCPVVLRLS 326 (327)
Q Consensus 298 ~~~~~~---~~~~~~~~-------~~~~SDH~pV~~~~~ 326 (327)
-.-+.- ........ ...+||||++.++|.
T Consensus 310 ~~~~~G~~~~~~l~l~g~~kiRgc~~fPSDHwgll~Tl~ 348 (349)
T KOG2756|consen 310 AAAEEGHIIPRSLDLLGLEKLRGCGRFPSDHWGLLCTLD 348 (349)
T ss_pred hhhhcCCcCccccchhhhhhhccCCCCCcccceeeeecc
Confidence 432111 00111110 123799999999986
No 11
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.86 E-value=5.5e-20 Score=161.64 Aligned_cols=152 Identities=20% Similarity=0.226 Sum_probs=91.9
Q ss_pred eEEEEEEcCCc--------hhhhhhhhHHHHHHhcCCCEEEEeeeecCC--CCcchhhhcccCCeEEEEEcc--------
Q psy6001 72 VKVSTWNVNGL--------RACVKKNACVEYILEENPDIMALQQIRCQE--DEVPESFRKSLSHYHMFWIGS-------- 133 (327)
Q Consensus 72 l~i~s~Ni~~~--------~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~--~~~~~~l~~~~~gy~~~~~~~-------- 133 (327)
|+||||||+.+ +...+..++.+.+...++|||||||+.... ..+...|.. ...|...+...
T Consensus 1 lkVmtyNv~~l~~~~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~~~~~~~l~~~L~~-~yp~~~~~~g~~~~g~~~~ 79 (283)
T TIGR03395 1 IKILSHNVYMLSTNLYPNWGQMERADLIASADYIKNQDVVILNEAFDTSASKRLLDNLRE-EYPYQTDVIGRSKKGWDKT 79 (283)
T ss_pred CeEEEEEeeeecccccCCccHhHHHHHHHHhhcccCCCEEEEecccchHHHHHHHHHHHh-hCCceEeecccccccchhc
Confidence 68999999642 233444567777888899999999995332 112222321 22332221111
Q ss_pred -------CCceeeEEEEEeeCcceeEe-----CCCCCCCCcCcEEEEEe--C--cEEEEEEeccCCCCc---chhhHHHH
Q psy6001 134 -------DKGQGGVGLLTKEKPLTVKY-----GIPGVSNQRGRVITAKF--K--RFTFITVYVPNSGIK---LKAIDFRM 194 (327)
Q Consensus 134 -------~~~~~Gvai~~k~~~~~~~~-----~~~~~~~~~~~~i~~~~--~--~~~~~~~~~~~~~~~---~~~~~~r~ 194 (327)
....+|++|+||.|+..... +...+.-....++.+++ + .+.++++|+.+.... ......|.
T Consensus 80 ~g~~~~~~~~~~G~~iLSr~Pi~~~~~~~f~~~~~~d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~ 159 (283)
T TIGR03395 80 LGNYSSSALEDGGVAIVSKWPIEEKIQYIFNKGCGADNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRA 159 (283)
T ss_pred cccccccCccCCEEEEEECCCccccEEEEccCCCCCccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHH
Confidence 11346999999999765432 11111111233444433 2 488999998754321 11135688
Q ss_pred HHHHHHHHHHHH-HhcCCCcEEEEccCCCCC
Q psy6001 195 IWDQHFYDYIQS-ELRSNSNIIISGDLNVCL 224 (327)
Q Consensus 195 ~~~~~l~~~l~~-~~~~~~~~Ii~GDFN~~~ 224 (327)
.|++.+.+++.+ .++.+.|+|||||||..+
T Consensus 160 ~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~~ 190 (283)
T TIGR03395 160 NQLNEIQDFIDSKNIPKDETVLIGGDLNVNK 190 (283)
T ss_pred HHHHHHHHHHhhccCCCCceEEEEeeCCCCC
Confidence 999999999972 134577899999999974
No 12
>PTZ00297 pantothenate kinase; Provisional
Probab=99.84 E-value=1.6e-19 Score=186.54 Aligned_cols=241 Identities=17% Similarity=0.202 Sum_probs=131.7
Q ss_pred ceEEEEEEcCCchh---hhhhhhHHHHHHhc-CCCEEEEeeeecCCCC-------------cchhhhcccCCeEEEEE-c
Q psy6001 71 KVKVSTWNVNGLRA---CVKKNACVEYILEE-NPDIMALQQIRCQEDE-------------VPESFRKSLSHYHMFWI-G 132 (327)
Q Consensus 71 ~l~i~s~Ni~~~~~---~~~~~~i~~~i~~~-~~DIl~LQEv~~~~~~-------------~~~~l~~~~~gy~~~~~-~ 132 (327)
.|+|+|||++.+.. .....++..+|+.. ++|||||||+...... +...+. ..||..+.. .
T Consensus 10 ~l~VlTyNv~~~~~~~~~~~~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~~~~l~--~~g~~~~~~~~ 87 (1452)
T PTZ00297 10 QARVLSYNFNILPRGCGGFQHERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLVDELK--ARGFHHYVISK 87 (1452)
T ss_pred ceEEEEEEccccCCCcccccHHHHHHHHHhccCCCEEEEecccccccccccccccchhhHHHHHHHH--hcCCceeEeec
Confidence 49999999975521 12334588899985 7799999999753211 112233 458743332 2
Q ss_pred cC--------C--ceeeEEEEEeeCcceeEe-CCCCC-C-C--CcCcEE--EEEeC-------cEEEEEEeccCCCCcch
Q psy6001 133 SD--------K--GQGGVGLLTKEKPLTVKY-GIPGV-S-N--QRGRVI--TAKFK-------RFTFITVYVPNSGIKLK 188 (327)
Q Consensus 133 ~~--------~--~~~Gvai~~k~~~~~~~~-~~~~~-~-~--~~~~~i--~~~~~-------~~~~~~~~~~~~~~~~~ 188 (327)
.. . ..+|+||+||+|+..... .++.. . + ..+.++ .+..+ .++++++|+.......
T Consensus 88 ~~~~~~~~~~~~~~~~G~AILSR~PI~~~~~~~l~~~~~~~~~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~~- 166 (1452)
T PTZ00297 88 QPSYLTMLRYNVCSDNGLIIASRFPIWQRGSYTFRNHERGEQSVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSLP- 166 (1452)
T ss_pred CccccccccCccccCCEEEEEECCChhhceeeecCcccccccccccceEEEEEEccccCCCCceEEEEEeCCCCCCCcc-
Confidence 11 1 457999999999876433 12211 1 0 122222 33332 4889999987554332
Q ss_pred hhHHHHHHHHHHHHHHHHHh---------cCCCcEEEEccCCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhcC--Cc
Q psy6001 189 AIDFRMIWDQHFYDYIQSEL---------RSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT--GL 257 (327)
Q Consensus 189 ~~~~r~~~~~~l~~~l~~~~---------~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l 257 (327)
.|..|+.++.+++...+ +...|+||+||||..--+ |... .....+-...+..+... ++
T Consensus 167 ---~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~~~~-----~~~~---~~~s~e~~~ml~~l~~~~~~l 235 (1452)
T PTZ00297 167 ---STSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNINGID-----PHNG---GHPTKRFQELLNELQDLGSGV 235 (1452)
T ss_pred ---hHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCcccc-----cccc---CCccHHHHHHHHHhhhccccH
Confidence 25567777777766211 356799999999974100 1100 00112222223333322 34
Q ss_pred eeeEecc---CCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhcccceeeecc--------CCCCCCCcceEEEEe
Q psy6001 258 VDAFRHL---YPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRS--------DVQGSTHCPVVLRLS 326 (327)
Q Consensus 258 ~d~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~~~~~~--------~~~~SDH~pV~~~~~ 326 (327)
.|++... ++.+....+|++...|...+.....||||||+++.+... .+.+.. ...+|||+||+++|.
T Consensus 236 ~dv~~~~~~~~~~T~p~~~~fP~~~p~~~~~~~~~riD~Ifv~~~v~v~--~~~v~~~~~~~~~~~~~~SDH~Pv~a~l~ 313 (1452)
T PTZ00297 236 REVIYDETGQHPPTRPPILFFPEQSKLERYSSTPQRQDYFFVTPCVQVE--KPRIEKFVVSSRRPYTYLSDHFGVSARLT 313 (1452)
T ss_pred hHHhHhhcCCCCCCCCccccccccCccccccCCCcceeEEEEeCCceEE--EEEEecccccCCCCCCCcCcCccEEEEEE
Confidence 4443322 222211245555443222222344599999999765432 444421 224799999999997
Q ss_pred C
Q psy6001 327 L 327 (327)
Q Consensus 327 l 327 (327)
+
T Consensus 314 l 314 (1452)
T PTZ00297 314 L 314 (1452)
T ss_pred e
Confidence 4
No 13
>KOG2338|consensus
Probab=99.84 E-value=7e-20 Score=164.72 Aligned_cols=150 Identities=15% Similarity=0.164 Sum_probs=104.7
Q ss_pred ceEEEEEEcCC------------------chhhhhhhhHHHHHHhcCCCEEEEeeeecCCCC-cch-hhhcccCCeEEEE
Q psy6001 71 KVKVSTWNVNG------------------LRACVKKNACVEYILEENPDIMALQQIRCQEDE-VPE-SFRKSLSHYHMFW 130 (327)
Q Consensus 71 ~l~i~s~Ni~~------------------~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~-~~~-~l~~~~~gy~~~~ 130 (327)
.|+||||||.. +.|..+...|+++++.++|||||||||+..... +.. .+. ..||..++
T Consensus 116 ~ftvmSYNILAQ~l~~~~~r~~~~~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq~d~~~~~~~~~~~--~lGy~~~~ 193 (495)
T KOG2338|consen 116 DFTVMSYNILAQDLLRDIRRLYFPESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQEDHYPEFWQPLLG--KLGYTGFF 193 (495)
T ss_pred ceEEEEehHhHHHHHHHhHHhhccCChhhcchhHHhHHHHHHHhhcCCCeeeehhhhhhhhHHHHHHHHh--hcCceEEE
Confidence 39999999932 345555567999999999999999999855532 333 344 79999988
Q ss_pred EccCC-ceeeEEEEEeeCcceeEeCCCCC----------CCCcCcEEEEEe----C---cEEEEEEeccCC-CCcchhhH
Q psy6001 131 IGSDK-GQGGVGLLTKEKPLTVKYGIPGV----------SNQRGRVITAKF----K---RFTFITVYVPNS-GIKLKAID 191 (327)
Q Consensus 131 ~~~~~-~~~Gvai~~k~~~~~~~~~~~~~----------~~~~~~~i~~~~----~---~~~~~~~~~~~~-~~~~~~~~ 191 (327)
..... +.+|||++|+...|++....+.. .+..+.++.+++ . .+.++++|+-.. ....+
T Consensus 194 ~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~v--- 270 (495)
T KOG2338|consen 194 KRRTGTKTHGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDV--- 270 (495)
T ss_pred EeccCCCCceEEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccch---
Confidence 87774 78999999999988865443332 233345555555 1 578888886433 23334
Q ss_pred HHHHHHHHHHHHHHH---HhcCCCcEEEEccCCCCCCc
Q psy6001 192 FRMIWDQHFYDYIQS---ELRSNSNIIISGDLNVCLQS 226 (327)
Q Consensus 192 ~r~~~~~~l~~~l~~---~~~~~~~~Ii~GDFN~~~~~ 226 (327)
|+.|...+.+.+++ ....+.|+|+|||||+.|++
T Consensus 271 -rL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p~~ 307 (495)
T KOG2338|consen 271 -RLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTEPDS 307 (495)
T ss_pred -hhHHHHHHHHHHHHHHhhcccCCCeEEecCCCCCCCC
Confidence 45555566655552 21347899999999999876
No 14
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.81 E-value=6.6e-18 Score=143.94 Aligned_cols=148 Identities=15% Similarity=0.220 Sum_probs=97.5
Q ss_pred eEEEEEEcCCchhhhhhh---hHHHHHHhc-CCCEEEEeeeecCCCC--------------cc--h---hhhcc-cCCeE
Q psy6001 72 VKVSTWNVNGLRACVKKN---ACVEYILEE-NPDIMALQQIRCQEDE--------------VP--E---SFRKS-LSHYH 127 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~~---~i~~~i~~~-~~DIl~LQEv~~~~~~--------------~~--~---~l~~~-~~gy~ 127 (327)
++++|||..|.......+ .+..++... ++|||+|||+...... +. + .+..+ .+++.
T Consensus 25 ~~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~~~~v~ey~w~l~~~srpgm~ 104 (271)
T PRK15251 25 YKVATWNLQGSSASTESKWNVNVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGVGIPIDEYTWNLGTRSRPNQV 104 (271)
T ss_pred ceEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCEEEEEecCCCccccccccccccccccccCcccEEEEccCccCCCce
Confidence 999999999985443322 266777765 6999999998632211 01 0 12110 34454
Q ss_pred EEEEccC---CceeeEEEEEeeCcceeEeCCCCCCCCcCcEEEEEeCcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHH
Q psy6001 128 MFWIGSD---KGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYI 204 (327)
Q Consensus 128 ~~~~~~~---~~~~Gvai~~k~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l 204 (327)
.+|...- ++..|+||++|.+..+.. .++.+....+.++.++++++.++++|+....... +.++++.+.++.
T Consensus 105 YiY~~aiD~~ggr~glAIlSr~~a~~~~-~l~~p~~~~Rpilgi~i~~~~ffstH~~a~~~~d-----a~aiV~~I~~~f 178 (271)
T PRK15251 105 YIYYSRVDVGANRVNLAIVSRRRADEVI-VLRPPTVASRPIIGIRIGNDVFFSIHALANGGTD-----AGAIVRAVHNFF 178 (271)
T ss_pred EEEEecccCCCCceeEEEEecccccceE-EecCCCCcccceEEEEecCeEEEEeeecCCCCcc-----HHHHHHHHHHHH
Confidence 4444332 266799999999966533 2333344566788888889999999998875321 567777777776
Q ss_pred HHHhcCCCcEEEEccCCCCCCc
Q psy6001 205 QSELRSNSNIIISGDLNVCLQS 226 (327)
Q Consensus 205 ~~~~~~~~~~Ii~GDFN~~~~~ 226 (327)
. .-.+..||+||||||..|+.
T Consensus 179 ~-~~~~~~pw~I~GDFNr~P~s 199 (271)
T PRK15251 179 R-PNMRHINWMIAGDFNRSPDR 199 (271)
T ss_pred h-hccCCCCEEEeccCCCCCcc
Confidence 5 11445799999999998655
No 15
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.79 E-value=4.4e-19 Score=152.74 Aligned_cols=145 Identities=26% Similarity=0.323 Sum_probs=78.2
Q ss_pred EEEEcCCchhh----hhhhhHHHHHHhcCCCEEEEeeeecC--CCCcchhhhcccCCeEEEEEccCC-----ceeeEEEE
Q psy6001 75 STWNVNGLRAC----VKKNACVEYILEENPDIMALQQIRCQ--EDEVPESFRKSLSHYHMFWIGSDK-----GQGGVGLL 143 (327)
Q Consensus 75 ~s~Ni~~~~~~----~~~~~i~~~i~~~~~DIl~LQEv~~~--~~~~~~~l~~~~~gy~~~~~~~~~-----~~~Gvai~ 143 (327)
|||||++.... .+...|.++|..++||||||||+... ...+...+.. ..++......... +..|++|+
T Consensus 1 ~T~Nv~~~~~~~~~~~~~~~i~~~i~~~~~Dii~LQEv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~ 79 (249)
T PF03372_consen 1 MTWNVRGWNYRSDNDRKRREIAQWIAELDPDIIALQEVRNDDLSELLEEQLRG-YLGYYGSFWPGNSPPSDAGGYGVAIL 79 (249)
T ss_dssp EEEEESTHHHHHHHHHHHHHHHHHHHHHT-SEEEEEEEESHHHHHHHHHHHHT-CTTHEEEEEETSSSTTCSSSEEEEEE
T ss_pred CeEEeCcCcccccchhHHHHHHHHHHhcCCCEEEEecchhhhhhhhhhhhccc-ccccccceeccccccccccCceEEEE
Confidence 79999994221 22234999999999999999999733 2222233442 3443333332222 25799999
Q ss_pred EeeCcceeEeCCCCCCCCcCcE----EEE---------EeCcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHh--
Q psy6001 144 TKEKPLTVKYGIPGVSNQRGRV----ITA---------KFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSEL-- 208 (327)
Q Consensus 144 ~k~~~~~~~~~~~~~~~~~~~~----i~~---------~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~-- 208 (327)
+|.++................. ... ....+.++++|+++... .+..+...+.+.+....
T Consensus 80 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~H~~~~~~------~~~~~~~~~~~~~~~~~~~ 153 (249)
T PF03372_consen 80 SRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSINGKPITVVNVHLPSSND------ERQEQWRELLARIQKIYAD 153 (249)
T ss_dssp ESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEETEEEEEEEEETTSHHH------HHHHHHHHHHHHHHHHHHT
T ss_pred EccccccccccccccccccccccccccccccccccccccceEEEeeeccccccch------hhhhhhhhhhhhhhhcccc
Confidence 9998665432211001111111 110 12357899999877221 12223334555554222
Q ss_pred cCCCcEEEEccCCCCCCc
Q psy6001 209 RSNSNIIISGDLNVCLQS 226 (327)
Q Consensus 209 ~~~~~~Ii~GDFN~~~~~ 226 (327)
....|+|||||||+.+..
T Consensus 154 ~~~~~~iv~GDfN~~~~~ 171 (249)
T PF03372_consen 154 NPNEPVIVMGDFNSRPDS 171 (249)
T ss_dssp SSCCEEEEEEE-SS-BSS
T ss_pred cccceEEEEeecccCCcc
Confidence 223479999999998654
No 16
>KOG3873|consensus
Probab=99.69 E-value=8.1e-17 Score=138.94 Aligned_cols=233 Identities=23% Similarity=0.287 Sum_probs=132.6
Q ss_pred eEEEEEEcCCchh-----hhhhhhHHHHHHhcCCCEEEEeeeecCCCCcc--hhhhcccCCeEEEEEccCCceeeEEEEE
Q psy6001 72 VKVSTWNVNGLRA-----CVKKNACVEYILEENPDIMALQQIRCQEDEVP--ESFRKSLSHYHMFWIGSDKGQGGVGLLT 144 (327)
Q Consensus 72 l~i~s~Ni~~~~~-----~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~--~~l~~~~~gy~~~~~~~~~~~~Gvai~~ 144 (327)
+||+|.|++|+.- ..+..++-+++.+...||+.|||++..++... ..... ..-|..+|..+--| .|+++|+
T Consensus 9 lriltlN~Wgip~~Sk~R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss-~yPysh~FHSGimG-aGL~vfS 86 (422)
T KOG3873|consen 9 LRILTLNIWGIPYVSKDRRHRMDAIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSS-VYPYSHYFHSGIMG-AGLCVFS 86 (422)
T ss_pred eeeeEeeccccccccchhHHHHHHHhHHHhhcccchhhHHHHHHHHHHHHHHHhccc-cCchHHhhhccccc-CceEEee
Confidence 9999999998741 22233588899999999999999986543211 11111 12344444433334 6999999
Q ss_pred eeCcceeEe------CCCCC----CCCcC---cEEEEEeCcEEEEEEe-----ccCCCCcchhhHHHHHHHHHHHHHHHH
Q psy6001 145 KEKPLTVKY------GIPGV----SNQRG---RVITAKFKRFTFITVY-----VPNSGIKLKAIDFRMIWDQHFYDYIQS 206 (327)
Q Consensus 145 k~~~~~~~~------~~~~~----~~~~~---~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~r~~~~~~l~~~l~~ 206 (327)
|.|+.+... +.+.- -.-.| .+..+..++ .++++| +|-...+..-+.-|..|+=.+.++|..
T Consensus 87 K~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~~g-~~v~~yntHLHAeY~rq~D~YL~HR~~QAwdlaqfi~~ 165 (422)
T KOG3873|consen 87 KHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLVGG-RMVNLYNTHLHAEYDRQNDEYLCHRVAQAWDLAQFIRA 165 (422)
T ss_pred cCchhhhhhhccccCCccceeeeccccccceeEEEEEeeCC-EEeeeeehhccccccccCchhhhHHHHHHHHHHHHHHH
Confidence 999886532 11111 00111 122334444 444444 344444555556677777777777773
Q ss_pred HhcCCCcEEEEccCCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCC--------------Cc
Q psy6001 207 ELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEG--------------AY 272 (327)
Q Consensus 207 ~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~--------------~~ 272 (327)
-.....-||++||||..|.+....= +++.|++|+|+..++.+.. .-
T Consensus 166 t~q~~~vVI~~GDLN~~P~dl~~~l--------------------l~~a~l~daw~~~h~~q~e~~~~r~s~~~~l~~g~ 225 (422)
T KOG3873|consen 166 TRQNADVVILAGDLNMQPQDLGHKL--------------------LLSAGLVDAWTSLHLDQCESDSFRLSEDKELVEGN 225 (422)
T ss_pred HhcCCcEEEEecCCCCCccccceee--------------------eeccchhhhHhhhchhhhcCcccccchhhhhhcCC
Confidence 2267788999999999987743210 1222455555554443210 01
Q ss_pred cccCCCC--C---CccCCCccceeEEEEeCcchhc-ccceeeecc------CCCCCCCcceEEEEeC
Q psy6001 273 TYWSFRN--K---SARLNNKGWRLDYHLVSEQLAN-NIKDCIIRS------DVQGSTHCPVVLRLSL 327 (327)
Q Consensus 273 t~~~~~~--~---~~~~~~~~~riD~il~s~~~~~-~~~~~~~~~------~~~~SDH~pV~~~~~l 327 (327)
|+.++.| + .......+.||||+|+++.... ....+++.. +...|||.+++++|.+
T Consensus 226 tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~~~~~~a~~~~t~~rvP~~d~s~SDH~Al~a~L~I 292 (422)
T KOG3873|consen 226 TCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGDCNAKIAEVEFTEPRVPGEDCSYSDHEALMATLKI 292 (422)
T ss_pred cccCcchhhhHHHhCCCCccceeeeEEEEcCcceEEEeeeEEecCCCCCCCCCCccchhhheeEEEe
Confidence 1111111 0 1112235679999999987532 223333332 1235999999999875
No 17
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.67 E-value=3.8e-15 Score=129.29 Aligned_cols=143 Identities=15% Similarity=0.186 Sum_probs=82.1
Q ss_pred eEEEEEEcCCchhhh-----hhhhHHHHHHhcCCCEEEEeeeecCCC-Ccch---hhhcc-cCCeEEEEEccCC---cee
Q psy6001 72 VKVSTWNVNGLRACV-----KKNACVEYILEENPDIMALQQIRCQED-EVPE---SFRKS-LSHYHMFWIGSDK---GQG 138 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~-----~~~~i~~~i~~~~~DIl~LQEv~~~~~-~~~~---~l~~~-~~gy~~~~~~~~~---~~~ 138 (327)
|+|+||||+.++... +...++++|+ ++|||++||+..... .+.. .|... ..+|..+.++..+ ...
T Consensus 18 l~I~SfNIr~fgd~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~Y~~v~s~r~gr~~~~E 95 (276)
T smart00476 18 LRICAFNIQSFGDSKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDSPNTYSYVSSEPLGRNSYKE 95 (276)
T ss_pred EEEEEEECcccCCccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcCCCCceEEecCCCCCCCCCE
Confidence 999999998765432 2334677776 889999999975432 2222 23321 1378777665332 123
Q ss_pred eEEEEEeeCcceeEeCCCCC------CCCcCcE-EEEEe-------CcEEEEEEeccCCCCcchhhHHHHHH-HHHHHHH
Q psy6001 139 GVGLLTKEKPLTVKYGIPGV------SNQRGRV-ITAKF-------KRFTFITVYVPNSGIKLKAIDFRMIW-DQHFYDY 203 (327)
Q Consensus 139 Gvai~~k~~~~~~~~~~~~~------~~~~~~~-i~~~~-------~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~l~~~ 203 (327)
-.++++|...+++......+ .+.-.|. ..+.+ ..+.++++|..+.... .+... ++.+.+.
T Consensus 96 ~~a~~Yr~drv~v~~~~~f~d~~~~~~~~F~ReP~~~~F~~~~~~~~~F~li~~H~~p~~~~-----~e~~aL~~v~~~~ 170 (276)
T smart00476 96 QYLFLYRSDLVSVLDSYLYDDGCECGNDVFSREPFVVKFSSPSTAVKEFVIVPLHTTPEAAV-----AEIDALYDVYLDV 170 (276)
T ss_pred EEEEEEecceEEEcccceecCCCCCccccccccceEEEEEeCCCCCccEEEEEecCChHHHH-----HHHHHHHHHHHHH
Confidence 48999999987754322211 0001111 11222 2589999998653211 12222 2223333
Q ss_pred HHHHhcCCCcEEEEccCCCC
Q psy6001 204 IQSELRSNSNIIISGDLNVC 223 (327)
Q Consensus 204 l~~~~~~~~~~Ii~GDFN~~ 223 (327)
.+ . ....++||+||||+.
T Consensus 171 ~~-~-~~~~~villGDFNa~ 188 (276)
T smart00476 171 RQ-K-WGTEDVIFMGDFNAG 188 (276)
T ss_pred HH-h-hccCCEEEEccCCCC
Confidence 33 2 258999999999996
No 18
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=99.64 E-value=8.3e-16 Score=133.18 Aligned_cols=74 Identities=19% Similarity=0.345 Sum_probs=58.4
Q ss_pred ceEEEEEEc---------------CCchhhhhhhhHHHHHHhcCCCEEEEeeeecCC-CCcch-hhhcccCCeEEEEEcc
Q psy6001 71 KVKVSTWNV---------------NGLRACVKKNACVEYILEENPDIMALQQIRCQE-DEVPE-SFRKSLSHYHMFWIGS 133 (327)
Q Consensus 71 ~l~i~s~Ni---------------~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~-~~~~~-~l~~~~~gy~~~~~~~ 133 (327)
.++|||||+ +.++|..|++.|.+++..+++||+|||||+... ..++. .|. ..||...+...
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~~s~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~--~~gY~~if~~k 107 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYPYSGWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLG--KLGYDGIFIPK 107 (378)
T ss_pred eeEEEehhhhhhhhccccccCCchhhhhhHHHHHHHHHHHhccCCceeeeehhhhhHHHHHHHHHhc--ccccceEEecC
Confidence 399999999 235666777779999999999999999998654 33555 566 88998888764
Q ss_pred CC-----------ceeeEEEEEee
Q psy6001 134 DK-----------GQGGVGLLTKE 146 (327)
Q Consensus 134 ~~-----------~~~Gvai~~k~ 146 (327)
.+ ...||+|+++.
T Consensus 108 ~~k~~~m~~~d~t~~dGc~if~k~ 131 (378)
T COG5239 108 ERKVKWMIDYDTTKVDGCAIFLKR 131 (378)
T ss_pred CCcccccccccccccceEEEEEEe
Confidence 43 34699999988
No 19
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.62 E-value=2.2e-15 Score=129.67 Aligned_cols=214 Identities=17% Similarity=0.117 Sum_probs=126.0
Q ss_pred eEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccCC-ceeeEEEEEeeCcce
Q psy6001 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK-GQGGVGLLTKEKPLT 150 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~~-~~~Gvai~~k~~~~~ 150 (327)
++++++|++.-+....+ ++..+...++|++.+||+..........+ ..+|..+..+..+ +..+.+++++.+...
T Consensus 89 ~~~l~~N~r~~n~~~~k--~Lsl~~~~~~D~v~~~E~~~~~~~~~~~l---~~~yP~~~~~~~~~~~~~~a~~sr~~~~~ 163 (309)
T COG3021 89 LWNLQKNVRFDNASVAK--LLSLIQQLDADAVTTPEGVQLWTAKVGAL---AAQYPAFILCQHPTGVFTLAILSRRPCCP 163 (309)
T ss_pred hhhhhhhccccCcCHHH--HHHHHhhhCcchhhhHHHHHHhHhHHHHH---HHhCCceeecCCCCCeeeeeecccccccc
Confidence 89999998776666656 78888888899999999963332222112 3555434443333 667788888886321
Q ss_pred eEeCCCCCCCCcCcEEEEEe----CcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCc
Q psy6001 151 VKYGIPGVSNQRGRVITAKF----KRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQS 226 (327)
Q Consensus 151 ~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~ 226 (327)
....-+.-....+++++... ..+.++++|..+.....+ .+| .|+..+.+.|. ....|+|++||||+.|
T Consensus 164 ~~~~e~~~~~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~--~~~-~ql~~l~~~i~---~~~gpvIlaGDfNa~p-- 235 (309)
T COG3021 164 LTEAEPWLRLPKSALATAYPLPDGTELTVVALHAVNFPVGTD--PQR-AQLLELGDQIA---GHSGPVILAGDFNAPP-- 235 (309)
T ss_pred ccccCccccCCccceeEEEEcCCCCEEEEEeeccccccCCcc--HHH-HHHHHHHHHHH---cCCCCeEEeecCCCcc--
Confidence 11111111222334443322 347888888876544332 334 77777887777 6679999999999974
Q ss_pred ccccCCCCCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhcccce
Q psy6001 227 IDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306 (327)
Q Consensus 227 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~ 306 (327)
|+ ....++...+..+.+...+..+ +..++... .+-.+.+|||||+++ + .+..
T Consensus 236 -----WS-------------~~~~R~~~l~~~~~~~~aG~~~---~~~~p~~~----~r~~g~PIDhvf~rg-l--~~~k 287 (309)
T COG3021 236 -----WS-------------RTAKRMAALGGLRAAPRAGLWE---VRFTPDER----RRAFGLPIDHVFYRG-L--TVMK 287 (309)
T ss_pred -----hh-------------HHHHHHHHhcccccchhccCCc---cccCHHHH----hhccCCCcceeeecC-c--chhh
Confidence 21 1122233333344444434221 22111111 113577899999998 2 3333
Q ss_pred eeeccCCCCCCCcceEEEEeC
Q psy6001 307 CIIRSDVQGSTHCPVVLRLSL 327 (327)
Q Consensus 307 ~~~~~~~~~SDH~pV~~~~~l 327 (327)
...... .+|||+||.++|+.
T Consensus 288 a~rl~~-~gSDH~PLLveF~~ 307 (309)
T COG3021 288 ARRLPD-RGSDHRPLLVEFSY 307 (309)
T ss_pred hhhccc-cCCCCCceEEEEEe
Confidence 444433 68999999999973
No 20
>KOG0620|consensus
Probab=99.56 E-value=7.2e-15 Score=131.86 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=60.2
Q ss_pred ceEEEEEEcCC----------------chhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEcc-
Q psy6001 71 KVKVSTWNVNG----------------LRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGS- 133 (327)
Q Consensus 71 ~l~i~s~Ni~~----------------~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~- 133 (327)
.++|+|||+.. ..+..+...+.+.|..+++|++|||||+...+.+...+. ..||...|...
T Consensus 19 ~~~v~s~n~l~~~~~~~~~~~~~~~~~~~w~~r~~~~~~ei~~~~ad~icLqev~~~~~~~~p~l~--~~gY~g~~~~k~ 96 (361)
T KOG0620|consen 19 TFTVLSYNILSQLYATSKLYMYCPSWALSWEYRRQLLLEEILNYNADILCLQEVDRYHDFFSPELE--ASGYSGIFIEKT 96 (361)
T ss_pred eEEeechhhhhhhhcccCCCcccchhhccHHHHHHHHHHHHhCCCcceeecchhhHHHHHccchhh--hcCCcceeeccc
Confidence 49999999943 234445556999999999999999999544344444566 56999888873
Q ss_pred ------CCceeeEEEEEeeCcceeE
Q psy6001 134 ------DKGQGGVGLLTKEKPLTVK 152 (327)
Q Consensus 134 ------~~~~~Gvai~~k~~~~~~~ 152 (327)
.++.+|+||++|...+...
T Consensus 97 ~~~~~~~~~~dGcaiffk~s~f~li 121 (361)
T KOG0620|consen 97 RMGEVELEKIDGCAIFFKPSLFQLI 121 (361)
T ss_pred ccchhhcccCceeeeeecchHHhhh
Confidence 3356899999999877653
No 21
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=99.45 E-value=3.8e-13 Score=103.11 Aligned_cols=118 Identities=31% Similarity=0.440 Sum_probs=61.5
Q ss_pred EEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCcccccCCCCCcccCCCCHHHHHHHHHH
Q psy6001 173 FTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFREL 252 (327)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 252 (327)
|.++++|.|+.. . +..+.+.|.+.+. ..... ++||+||||+.+..++.... .......+..+
T Consensus 1 i~i~~vY~pp~~-~------~~~~~~~l~~~~~-~~~~~-~~Ii~GDFN~~~~~w~~~~~---------~~~~~~~l~~~ 62 (119)
T PF14529_consen 1 ITIISVYAPPSS-E------REEFFDQLRQLLK-NLPPA-PIIIGGDFNAHHPNWDSSNT---------NSRRGEQLLDW 62 (119)
T ss_dssp EEEEEEE--TTS--------CHHHHHHHHHHHH-CCTTS-SEEEEEE-----GGGT-SCH---------HHHHHHHHHHH
T ss_pred CEEEEEECCCCc-c------HHHHHHHHHHHHH-hCCCC-CEEEEeECCCCchhhhhccc---------cchhHHHHHHH
Confidence 578999999887 1 2356667777776 32222 99999999996444332110 00233444444
Q ss_pred -hcCCceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhcccceeeeccCCCCCCCcceE
Q psy6001 253 -LDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVV 322 (327)
Q Consensus 253 -~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~~~~~~~~~~SDH~pV~ 322 (327)
.+.++.+. ... ...+||++.+. +++||++|++..+... ...........|||+||.
T Consensus 63 ~~~~~l~~~----~~~-~~~~T~~~~~~--------~s~iD~~~~s~~~~~~-~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 63 LDSHNLVDL----NPP-GRPPTFISNSH--------GSRIDLILTSDNLLSW-CVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp HHHCTEEE-------T-T---SEEECCC--------EE--EEEEEECCGCCC-EEEEEETTSSSSSB--EE
T ss_pred hhhceeeee----ecC-CCCCcccCCCC--------CceEEEEEECChHHhc-CcEEEeCCCCCCCccCCC
Confidence 44588875 221 12378765433 6799999999988766 333344456689999985
No 22
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=99.42 E-value=3.3e-12 Score=113.84 Aligned_cols=149 Identities=24% Similarity=0.329 Sum_probs=86.1
Q ss_pred eEEEEEEcCCchhhhhhhhHHHHHHh-------cCCCE--EEEeeee-cCCC----------Ccch-hhhccc---CCeE
Q psy6001 72 VKVSTWNVNGLRACVKKNACVEYILE-------ENPDI--MALQQIR-CQED----------EVPE-SFRKSL---SHYH 127 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~~~i~~~i~~-------~~~DI--l~LQEv~-~~~~----------~~~~-~l~~~~---~gy~ 127 (327)
+-++||||++........ +.++|.. ..||| |+|||+. .... ..+. .+.... .+|.
T Consensus 5 v~v~TwNv~~~~~~p~~~-l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~~~~~~~~~W~~~i~~~l~~~~~Y~ 83 (310)
T smart00128 5 VLVGTWNVGGLKADPKVD-VTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLETIAGKERLWSKLIESSLNGDGQYN 83 (310)
T ss_pred EEEEEEECCCccCCChhh-HHHhhccccccccCCCCCEEEEEeeeecccchhhhhhccchhHHHHHHHHHHhcCCCCceE
Confidence 778999999964222222 6666654 67999 7799982 1110 0011 111101 3454
Q ss_pred EEEEccCCceeeEEEEEeeCcce---------eEeCCCCC-CCCcCcEEEEEeCc--EEEEEEeccCCCCcchhhHHHHH
Q psy6001 128 MFWIGSDKGQGGVGLLTKEKPLT---------VKYGIPGV-SNQRGRVITAKFKR--FTFITVYVPNSGIKLKAIDFRMI 195 (327)
Q Consensus 128 ~~~~~~~~~~~Gvai~~k~~~~~---------~~~~~~~~-~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~ 195 (327)
......- +.-++.|+.+..... +..++... ....+..+.+.+.. +.++++|+++.... .+.|..
T Consensus 84 ~v~~~~l-~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~---~~~R~~ 159 (310)
T smart00128 84 VLAKVRL-VGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN---VEQRNQ 159 (310)
T ss_pred EEeeeee-cceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccch---hhhhHH
Confidence 4433221 224577788776432 11222222 34456666777765 99999999986553 456777
Q ss_pred HHHHHHHHHHHH------hcCCCcEEEEccCCCCCC
Q psy6001 196 WDQHFYDYIQSE------LRSNSNIIISGDLNVCLQ 225 (327)
Q Consensus 196 ~~~~l~~~l~~~------~~~~~~~Ii~GDFN~~~~ 225 (327)
.+..+...+.-. +.....+|++||||.+.+
T Consensus 160 ~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~ 195 (310)
T smart00128 160 DYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLD 195 (310)
T ss_pred HHHHHHHhcCCCCCccccccccceEEEecCcceeec
Confidence 777776554200 124678999999998754
No 23
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=98.92 E-value=1.8e-08 Score=95.79 Aligned_cols=209 Identities=20% Similarity=0.287 Sum_probs=119.0
Q ss_pred hHHHHHHhcCCCEEEEeeeecCC---CC---cc---hhhhcc--cC-CeEEEEEccC-C---ceeeEEEEEeeCcceeEe
Q psy6001 90 ACVEYILEENPDIMALQQIRCQE---DE---VP---ESFRKS--LS-HYHMFWIGSD-K---GQGGVGLLTKEKPLTVKY 153 (327)
Q Consensus 90 ~i~~~i~~~~~DIl~LQEv~~~~---~~---~~---~~l~~~--~~-gy~~~~~~~~-~---~~~Gvai~~k~~~~~~~~ 153 (327)
.+...|..+++||+.|-|+.... .. +. ..|... .. .|.++..... . ..-++++++|...+....
T Consensus 506 k~v~ai~~ldaDV~GL~Eien~~~~~~s~~ai~~lV~~lna~~G~~~~y~~v~p~~~~~lgtD~I~vg~iY~~~~V~~~g 585 (798)
T COG2374 506 KIVTAILTLDADVLGLMEIENNGYGTDSGDAIAQLVNALNAKAGAGTRYAFVAPGRNGGLGTDAIRVGFIYKPSAVSLVG 585 (798)
T ss_pred HHHHHHhhcchhhheeeeeeccCCCCCcHHHHHHHHHHHHhhcCCCceEEEEecCccCCcCCCceeEEEEeccceEEecc
Confidence 38888999999999999997441 11 11 122220 22 4544444322 1 345688999887665432
Q ss_pred CCCCC-----------CCCcCcEEEE-Ee------CcEEEEEEeccCCCCc-----------chhhHHHHHHHHHHHHHH
Q psy6001 154 GIPGV-----------SNQRGRVITA-KF------KRFTFITVYVPNSGIK-----------LKAIDFRMIWDQHFYDYI 204 (327)
Q Consensus 154 ~~~~~-----------~~~~~~~i~~-~~------~~~~~~~~~~~~~~~~-----------~~~~~~r~~~~~~l~~~l 204 (327)
..... -+...|.-.+ .+ ..|+++.=|+.+.... ......|..+.++|..++
T Consensus 586 ~~~~~~~~a~~~v~~~~~~n~R~~laqtF~~~~~~ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~l 665 (798)
T COG2374 586 KAAIVDNDAFLGVGEIDDNNARPPLAQTFQDLSGGEKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFL 665 (798)
T ss_pred cccccccccccccccccccccCcchhhhhhhccCCcEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHH
Confidence 21110 1111222221 11 2366666676554331 122345778899999999
Q ss_pred HHHh--cCCCcEEEEccCCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCCCCCCc
Q psy6001 205 QSEL--RSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSA 282 (327)
Q Consensus 205 ~~~~--~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~ 282 (327)
.... ....+++|+||||+- +.. +.+..+-..|+......+++...+ |||.-..
T Consensus 666 a~~~~~~~d~~~viLGD~N~y--------~~e------------dpI~~l~~aGy~~l~~~~~~~~~~-YSY~f~G---- 720 (798)
T COG2374 666 ATNPTGKADADIVILGDFNDY--------AFE------------DPIQALEGAGYMNLAARFHDAGDR-YSYVFNG---- 720 (798)
T ss_pred hhCcccccCCCEEEEeccchh--------hhc------------cHHHHHhhcCchhhhhhccCCCCc-eEEEECC----
Confidence 8322 457899999999985 111 112233333777766666655443 7754211
Q ss_pred cCCCccceeEEEEeCcchhcccceeeec---------------------------cCCCCCCCcceEEEEeC
Q psy6001 283 RLNNKGWRLDYHLVSEQLANNIKDCIIR---------------------------SDVQGSTHCPVVLRLSL 327 (327)
Q Consensus 283 ~~~~~~~riD~il~s~~~~~~~~~~~~~---------------------------~~~~~SDH~pV~~~~~l 327 (327)
..-.|||+|+|..+...+..+... ..++.|||-||++.|+|
T Consensus 721 ----~~gtLDhaLas~sl~~~v~~a~ewHINAdE~~~ldYn~~Fk~q~~~~~~~~~~fR~SDHDPvvvglnL 788 (798)
T COG2374 721 ----QSGTLDHALASASLAAQVSGATEWHINADEPDALDYNLEFKGQNVSLYKTTNPFRASDHDPVVVGLNL 788 (798)
T ss_pred ----ccchHhhhhhhhhhhhhccCceeeeecccccchhhhhhhhccccccccccCCccccCCCCCeEEEEEe
Confidence 223699999998776443322110 12357999999999875
No 24
>KOG0566|consensus
Probab=98.50 E-value=9.1e-07 Score=85.96 Aligned_cols=149 Identities=19% Similarity=0.277 Sum_probs=74.3
Q ss_pred eEEEEEEcCCchhhhhhhhHHHHHHhc-------CCC--EEEEeeeecC-C----------CCcch-hhhcccCCeE-EE
Q psy6001 72 VKVSTWNVNGLRACVKKNACVEYILEE-------NPD--IMALQQIRCQ-E----------DEVPE-SFRKSLSHYH-MF 129 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~~~i~~~i~~~-------~~D--Il~LQEv~~~-~----------~~~~~-~l~~~~~gy~-~~ 129 (327)
+-+.||||+|-....+.. |.+||-.. -+| +|+|||+-.- . ..++. .+.....+|. -|
T Consensus 539 IfvgTfNvNG~s~~~k~~-L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~As~tk~~~Wee~i~~~Ln~~~~kY 617 (1080)
T KOG0566|consen 539 IFVGTFNVNGRSAAFKDD-LSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSASTTKRRFWEEKILKTLNRYKNKY 617 (1080)
T ss_pred EEEEeeeccCccccchhh-HHhhccccccCCcCCcCcEEEEeehhhhhcCccceeccChHHHHHHHHHHHHHhcCCCCce
Confidence 667899999944443422 66665433 367 4678997311 1 11222 1221123331 11
Q ss_pred EEccCCceeeEEE--EEeeCccee---------EeCCCCC-CCCcCcEEEEEe--CcEEEEEEeccCCCCcchhhHHHHH
Q psy6001 130 WIGSDKGQGGVGL--LTKEKPLTV---------KYGIPGV-SNQRGRVITAKF--KRFTFITVYVPNSGIKLKAIDFRMI 195 (327)
Q Consensus 130 ~~~~~~~~~Gvai--~~k~~~~~~---------~~~~~~~-~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~ 195 (327)
.--......||++ |.|...... ..++..- -+.....|...+ ..+-+++-|+..+..+. ++|.+
T Consensus 618 vlL~s~QlvGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~snv---~ERn~ 694 (1080)
T KOG0566|consen 618 VLLRSEQLVGVCLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSNV---EERNE 694 (1080)
T ss_pred EEEehhhhheeeEEEEEcccccchhhhcccceeecccccccCCCceEEEEEEeccccEEEEecccccccchH---hhhhh
Confidence 1111222346554 445432221 1223222 122223333443 35778888887765543 34555
Q ss_pred HHHHHHHHHH----HHhcCCCcEEEEccCCCCC
Q psy6001 196 WDQHFYDYIQ----SELRSNSNIIISGDLNVCL 224 (327)
Q Consensus 196 ~~~~l~~~l~----~~~~~~~~~Ii~GDFN~~~ 224 (327)
-++.+.+-|. ..+..+..++-|||||-+.
T Consensus 695 DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYRI 727 (1080)
T KOG0566|consen 695 DYKTIARKLRFPRGRMIFSHDYIFWLGDFNYRI 727 (1080)
T ss_pred hHHHHHHhccccCCccccCCceEEEecccceee
Confidence 5555555442 0225677899999999863
No 25
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=97.65 E-value=0.00051 Score=65.18 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=36.7
Q ss_pred cCcEEEEEe--CcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHH----------HHhcCCCcEEEEccCCCCCC
Q psy6001 162 RGRVITAKF--KRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQ----------SELRSNSNIIISGDLNVCLQ 225 (327)
Q Consensus 162 ~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~----------~~~~~~~~~Ii~GDFN~~~~ 225 (327)
.+..+.+.+ ..+.++++|++.++... ....|.+.+..+...+. ..+.....+|++||||...+
T Consensus 409 GAVaIr~~l~~Ts~cFVn~HLAAg~~~~-~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRId 483 (621)
T PLN03191 409 GSVSISMSLFQSRLCFVCSHLTSGHKDG-AEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLN 483 (621)
T ss_pred eeEEEEEEEcCcEEEEEEeccccccccc-hHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCcccccc
Confidence 334444544 35899999998765432 22345554444443221 01123568999999998754
No 26
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=96.86 E-value=0.006 Score=55.51 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=31.2
Q ss_pred cEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHH----hcCCCcEEEEccCCCCC
Q psy6001 172 RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSE----LRSNSNIIISGDLNVCL 224 (327)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~----~~~~~~~Ii~GDFN~~~ 224 (327)
.+.+++.|+...-.+ .++|..-++.+...|.-. +.....++.+||||...
T Consensus 166 ~~cFv~shlaag~~N---~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNyRV 219 (460)
T COG5411 166 SFCFVNSHLAAGVNN---IEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNYRV 219 (460)
T ss_pred CcEEEecchhccccc---HHHHHHHHHHHHHheecCCCceecccceEEEecccCcee
Confidence 567777777654333 345666666665555411 24566799999999653
No 27
>KOG1294|consensus
Probab=93.87 E-value=0.38 Score=43.33 Aligned_cols=149 Identities=21% Similarity=0.314 Sum_probs=82.1
Q ss_pred CCCcCcEEEEEeCcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCcccccCCCCCccc
Q psy6001 159 SNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKT 238 (327)
Q Consensus 159 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~ 238 (327)
.+..++.+......+.++++|.|....+.... ++.++..+...+++.+..+.++++ |..+..++.... ....
T Consensus 9 ~~~~~~~~~~~k~~~~~~~v~~~~~~~e~~~~--~~~~~~~l~~r~~~~~~~g~~~~~----~i~~~~i~~~~~--~~~~ 80 (335)
T KOG1294|consen 9 LDSEGRCVIVDKEMFVLINVYCPRNSPEISKR--RLRFAKVLHYRVEKLLKQGNRKVL----NICPWDIAGLEA--CEKF 80 (335)
T ss_pred hhccCCeeeeecccccccceeccccCCcchhh--hhhhhhHHHHHHHHHHHhCCeeEe----ecCchhhhhhhh--hhcc
Confidence 45677777777777899999998876643322 567777777777744466777777 665544433211 1111
Q ss_pred CCC--CHHHHHHHHHHhcCCc-eeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhcccceeeeccCC--
Q psy6001 239 AGY--TVEERRNFRELLDTGL-VDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDV-- 313 (327)
Q Consensus 239 ~~~--~~~~~~~~~~~~~~~l-~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~~~~~~~~-- 313 (327)
.+. ...+...+..+.+.++ .+..+..++...+ ||.|-..- .........++||+...+-.. ...+
T Consensus 81 ~~~~~~~~~l~d~~~~~~t~~~i~~~~~~~~~~~~-~~~~~~~~-~~~~~~y~~~~~~~~~~p~~v--------~~~~~~ 150 (335)
T KOG1294|consen 81 SGDPEISSELRDLQCLLETKCTIDSGPCSHPTEKG-YTHSLLSC-ASKKDGYSGEIDYSKFKPLKV--------HYGFGA 150 (335)
T ss_pred ccchhccccchhhhhhhhccceeccCcceecccCC-cccceeec-ccccCCccceeeeeeccccee--------eecccc
Confidence 111 1111222223333333 5666666666443 75443322 222234556788888766321 1122
Q ss_pred CCCCCcceEEEE
Q psy6001 314 QGSTHCPVVLRL 325 (327)
Q Consensus 314 ~~SDH~pV~~~~ 325 (327)
.+|||+|+...+
T Consensus 151 ~~s~h~~~g~~i 162 (335)
T KOG1294|consen 151 MGSDHRPVGRVI 162 (335)
T ss_pred cCCccCccceEE
Confidence 379999876543
No 28
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=93.12 E-value=0.35 Score=42.14 Aligned_cols=57 Identities=18% Similarity=0.080 Sum_probs=38.4
Q ss_pred cEEEEEEeccCCCCcchh--------hHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCccc
Q psy6001 172 RFTFITVYVPNSGIKLKA--------IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSID 228 (327)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~--------~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~~d 228 (327)
.+-++|+|+-+...+... ...|..-+....+.+.....+..++++.||||...+...
T Consensus 81 ~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~~~~~lF~fGDfNyRld~~~ 145 (356)
T PTZ00312 81 VVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFISPSDPLFIFGDFNVRLDGHN 145 (356)
T ss_pred EEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccCCCCcEEEeccceeeecccc
Confidence 377889998766553322 234555566666556634477899999999999876543
No 29
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=85.91 E-value=0.86 Score=43.96 Aligned_cols=38 Identities=29% Similarity=0.606 Sum_probs=28.6
Q ss_pred ceEEEEEEcCCchhhhhhhhHHHHHHhcCC-C--EEEEeeee
Q psy6001 71 KVKVSTWNVNGLRACVKKNACVEYILEENP-D--IMALQQIR 109 (327)
Q Consensus 71 ~l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~-D--Il~LQEv~ 109 (327)
++-|.||||.|-....... +..++...+| | ||+|||+.
T Consensus 109 rv~v~TWNV~g~~p~~~l~-l~~wl~~~~p~DiyviG~QE~v 149 (621)
T PLN03191 109 RVTIGTWNVAGRLPSEDLE-IEDWLSTEEPADIYIIGFQEVV 149 (621)
T ss_pred EEEEEEeecCCCCCcccCC-HHHhccCCCCCCEEEEeeEEec
Confidence 3778999999987766555 7777766654 6 57899984
No 30
>KOG1976|consensus
Probab=79.82 E-value=3.1 Score=36.52 Aligned_cols=59 Identities=24% Similarity=0.213 Sum_probs=38.7
Q ss_pred CcEEEEEEeccCCCC--------cchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCcccc
Q psy6001 171 KRFTFITVYVPNSGI--------KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDL 229 (327)
Q Consensus 171 ~~~~~~~~~~~~~~~--------~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~~d~ 229 (327)
..+.++++|+=+... ...--..|.++++.+.+.|..+-.....+++.||||...++.+.
T Consensus 169 k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~~~~~~~~fVfGdfNfrLds~s~ 235 (391)
T KOG1976|consen 169 KEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEEGLRNDAIFVFGDFNFRLDSTSL 235 (391)
T ss_pred ceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhhccCceEEEEecccccccchHHH
Confidence 347788877632211 11222346788888888887433445578999999999888654
No 31
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=27.32 E-value=81 Score=27.09 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=27.0
Q ss_pred eEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeec
Q psy6001 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRC 110 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~ 110 (327)
+.++++|....+...+...+.+.|....+|+|++.|...
T Consensus 2 ia~~Q~~~~~~d~~~N~~~~~~~i~~a~adlvvfPE~~l 40 (259)
T cd07577 2 VGYVQFNPKFGEVEKNLKKVESLIKGVEADLIVLPELFN 40 (259)
T ss_pred EEEEEccCccCCHHHHHHHHHHHHHHhCCCEEEcccccc
Confidence 556777764334343444488888777799999999753
No 32
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=25.49 E-value=75 Score=28.96 Aligned_cols=35 Identities=11% Similarity=-0.047 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCcc
Q psy6001 193 RMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSI 227 (327)
Q Consensus 193 r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~~ 227 (327)
|..+-..+.+.+.+.....++++|+||||..+.+.
T Consensus 157 r~r~t~~~lnri~e~~~~~w~~l~~~l~n~e~gd~ 191 (378)
T COG5239 157 RFRQTYILLNRIGEKDNIAWVCLFVGLFNKEPGDT 191 (378)
T ss_pred hhhHHHHHHHHHhhhhhcchhheeeeeccCCCCCc
Confidence 34444555555542223347889999999988773
No 33
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.45 E-value=64 Score=23.96 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=12.3
Q ss_pred HHHHHHhcCCCEEEEeee
Q psy6001 91 CVEYILEENPDIMALQQI 108 (327)
Q Consensus 91 i~~~i~~~~~DIl~LQEv 108 (327)
+++.+.+.+||+|+|.=+
T Consensus 42 l~~~~~~~~pdvV~iS~~ 59 (119)
T cd02067 42 IVEAAKEEDADAIGLSGL 59 (119)
T ss_pred HHHHHHHcCCCEEEEecc
Confidence 677777777777777543
No 34
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=22.20 E-value=65 Score=26.69 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=20.9
Q ss_pred EEcCCchhhhhhhhHHHHHHhcCCCEEEEeee
Q psy6001 77 WNVNGLRACVKKNACVEYILEENPDIMALQQI 108 (327)
Q Consensus 77 ~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv 108 (327)
|.+-.++.......+++.+++.+||+|+|.=+
T Consensus 113 ~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~ 144 (197)
T TIGR02370 113 FDVIDLGRDVPIDTVVEKVKKEKPLMLTGSAL 144 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHcCCCEEEEccc
Confidence 45544444444445888888888888887654
No 35
>KOG0808|consensus
Probab=22.19 E-value=57 Score=28.16 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=16.4
Q ss_pred hHHHHHHhcCCCEEEEeeeec
Q psy6001 90 ACVEYILEENPDIMALQQIRC 110 (327)
Q Consensus 90 ~i~~~i~~~~~DIl~LQEv~~ 110 (327)
.+++....-.+.||||||.+.
T Consensus 104 aiieaaa~agvniiclqeawt 124 (387)
T KOG0808|consen 104 AIIEAAAVAGVNIICLQEAWT 124 (387)
T ss_pred HHHHHHHhcCccEEEeehhhc
Confidence 366666777899999999763
No 36
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=21.25 E-value=1.1e+02 Score=21.51 Aligned_cols=28 Identities=4% Similarity=0.082 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy6001 196 WDQHFYDYIQSELRSNSNIIISGDLNVC 223 (327)
Q Consensus 196 ~~~~l~~~l~~~~~~~~~~Ii~GDFN~~ 223 (327)
.++.|.+.+++..++.+.+||+++|-+.
T Consensus 38 iA~~iK~~lD~~yG~~Wh~IVG~~Fg~~ 65 (89)
T PF01221_consen 38 IAEFIKQELDKKYGPTWHCIVGKSFGSS 65 (89)
T ss_dssp HHHHHHHHHHHHHSS-EEEEEESEEEEE
T ss_pred HHHHHHHHHhcccCCceEEEECCcEEEE
Confidence 3445556666555888999999998764
Done!