Query psy6001
Match_columns 327
No_of_seqs 186 out of 1483
Neff 9.6
Searched_HMMs 29240
Date Sat Aug 17 00:04:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 1.4E-43 4.7E-48 309.9 26.8 252 71-326 3-256 (265)
2 1hd7_A DNA-(apurinic or apyrim 100.0 2E-41 6.8E-46 304.0 23.4 254 70-327 60-318 (318)
3 2o3h_A DNA-(apurinic or apyrim 100.0 5.6E-40 1.9E-44 289.8 29.5 253 71-327 28-285 (285)
4 2j63_A AP-endonuclease; base e 100.0 1.6E-40 5.5E-45 309.5 26.3 255 70-327 148-466 (467)
5 2jc5_A Exodeoxyribonuclease; h 100.0 1.6E-39 5.5E-44 282.5 25.4 253 71-327 1-256 (259)
6 2voa_A AF_EXO, XTHA, exodeoxyr 100.0 4.8E-39 1.6E-43 279.4 27.9 249 71-327 1-257 (257)
7 2jc4_A Exodeoxyribonuclease II 100.0 1.6E-38 5.4E-43 275.7 25.2 249 72-327 1-256 (256)
8 1ako_A Exonuclease III; AP-end 100.0 4E-37 1.4E-41 268.7 19.8 248 72-326 1-267 (268)
9 1vyb_A ORF2 contains A reverse 100.0 2.7E-34 9.3E-39 246.2 21.0 225 71-326 7-238 (238)
10 4gew_A 5'-tyrosyl-DNA phosphod 100.0 4.1E-31 1.4E-35 240.3 22.0 225 69-326 117-361 (362)
11 2ei9_A Non-LTR retrotransposon 100.0 2.6E-31 9.1E-36 228.2 16.7 210 71-326 7-218 (240)
12 4fva_A 5'-tyrosyl-DNA phosphod 100.0 8.7E-30 3E-34 220.1 22.0 223 71-326 13-255 (256)
13 1wdu_A TRAS1 ORF2P; four-layer 100.0 1.9E-29 6.4E-34 217.6 22.7 220 71-327 19-243 (245)
14 3teb_A Endonuclease/exonucleas 100.0 1.7E-28 5.9E-33 213.6 20.9 227 71-327 3-266 (266)
15 4gz1_A Tyrosyl-DNA phosphodies 100.0 3.5E-29 1.2E-33 216.1 15.5 230 69-327 7-254 (256)
16 4f1h_A Tyrosyl-DNA phosphodies 100.0 1.2E-28 4.1E-33 211.0 17.8 228 70-326 2-249 (250)
17 3g6s_A Putative endonuclease/e 100.0 2E-27 6.8E-32 207.4 17.6 222 71-326 3-259 (267)
18 3l1w_A Uncharacterized protein 99.9 6E-27 2.1E-31 203.1 18.4 219 72-327 1-251 (257)
19 3mpr_A Putative endonuclease/e 99.9 1.4E-25 4.8E-30 199.0 17.9 221 71-326 6-288 (298)
20 1zwx_A SMCL, sphingomyelinase- 99.9 8.4E-26 2.9E-30 200.4 13.9 229 71-327 10-300 (301)
21 2ddr_A Sphingomyelin phosphodi 99.9 9.9E-24 3.4E-28 187.4 16.1 235 71-327 9-305 (306)
22 3i41_A Beta-hemolysin; beta to 99.9 1E-23 3.6E-28 188.5 15.6 204 71-301 29-275 (317)
23 3ngq_A CCR4-NOT transcription 99.9 1.7E-22 5.7E-27 184.2 15.7 150 71-226 31-260 (398)
24 2f1n_A CDT B, cytolethal diste 99.9 6.5E-21 2.2E-25 160.0 17.1 146 72-226 16-192 (262)
25 4b8c_D Glucose-repressible alc 99.8 3.6E-22 1.2E-26 197.2 3.0 239 71-327 394-717 (727)
26 1sr4_B CDT B, cytolethal diste 99.8 3.4E-19 1.2E-23 151.4 18.1 146 71-223 4-181 (261)
27 2a40_B Deoxyribonuclease-1; WA 99.8 5E-20 1.7E-24 160.0 11.6 148 72-225 1-174 (260)
28 2imq_X Salivary nitrophorin; f 99.7 9.1E-18 3.1E-22 147.1 6.7 150 71-225 8-177 (282)
29 1i9z_A Synaptojanin, phosphati 99.6 1.9E-14 6.5E-19 128.8 18.1 146 72-224 27-212 (347)
30 2xsw_A 72 kDa inositol polypho 99.5 2.9E-14 9.9E-19 127.9 12.1 149 72-226 28-211 (357)
31 3mtc_A Type II inositol-1,4,5- 99.3 2.7E-11 9.1E-16 105.9 15.6 146 72-225 10-196 (313)
32 4a9c_A Phosphatidylinositol-3, 99.0 3.5E-09 1.2E-13 92.7 14.4 146 72-224 10-196 (316)
33 2yxb_A Coenzyme B12-dependent 20.6 46 0.0016 25.4 2.0 19 90-108 60-78 (161)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=100.00 E-value=1.4e-43 Score=309.88 Aligned_cols=252 Identities=35% Similarity=0.706 Sum_probs=218.0
Q ss_pred ceEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccCC-ceeeEEEEEeeCcc
Q psy6001 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK-GQGGVGLLTKEKPL 149 (327)
Q Consensus 71 ~l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~~-~~~Gvai~~k~~~~ 149 (327)
.|+|+||||+|++...++. +.++|+.++||||||||++.....+...+.. ..||..++..... ++.|+||++|.++.
T Consensus 3 ~l~i~s~Nv~g~~~~~~~~-l~~~i~~~~~DIv~LQEt~~~~~~~~~~~~~-~~gy~~~~~~~~~~~~~Gvail~k~~~~ 80 (265)
T 3g91_A 3 VLKIISWNVNGLRAVHRKG-FLKWFMEEKPDILCLQEIKAAPEQLPRKLRH-VEGYRSFFTPAERKGYSGVAMYTKVPPS 80 (265)
T ss_dssp EEEEEEEECSCHHHHHHHT-HHHHHHHHCCSEEEEECCCSCGGGSCHHHHC-CTTCEEEEECBSSTTSCCEEEEESSCCS
T ss_pred ccEEEEEEcCCchhhhhhh-HHHHHHhcCCCEEEEEeccccccccChhhhc-ccCCcEEEccCCCCCcCEEEEEEecChH
Confidence 3999999999998877654 9999999999999999998776555553432 5899988876654 77899999999988
Q ss_pred eeEeCCCCC-CCCcCcEEEEEeCcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCccc
Q psy6001 150 TVKYGIPGV-SNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSID 228 (327)
Q Consensus 150 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~~d 228 (327)
.+..++... .+..++++.+.+..+.++++|+|+.....+++++|..|++.|.+++.+....+.|+|||||||+.+.+.|
T Consensus 81 ~~~~~~~~~~~d~~gr~i~~~~~~~~i~~vy~p~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d 160 (265)
T 3g91_A 81 SLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGAMSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREID 160 (265)
T ss_dssp EEECCCSCHHHHSBSCEEEEECSSCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGG
T ss_pred HhccCCCCcccCCcCCEEEEEeCCEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHcCCCCEEEECccccCCchhh
Confidence 877766555 6778999999999999999999999888788899999999999999832244799999999999999999
Q ss_pred ccCCCCCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhcccceee
Q psy6001 229 LANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308 (327)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~~~ 308 (327)
..++..+.+..++.+.++..+..+++.|+.|+|+..+|... .||||++++ +.+..+.++||||||+++.+...+..+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~D~~r~~~p~~~-~yT~~~~~~-~~~~~~~~~rID~il~s~~~~~~~~~~~ 238 (265)
T 3g91_A 161 LARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPG-QYTWWSYRT-RARERNVGWRLDYFFVNEEFKGKVKRSW 238 (265)
T ss_dssp BSCTGGGTTSTTSCHHHHHHHHHHHHTTEEETHHHHCCCSC-CCSBCCSST-TTTTTTCCBCCEEEEEEGGGGGGEEEEE
T ss_pred ccCHhhcCCCCccCHHHHHHHHHHHhcCcEEeeHhhCCCCC-CCCCcCCCC-CccccCceEEEEEEEECHHHHhhhcEEE
Confidence 88888777888899999999999998899999999998866 599999988 7777778899999999999988888999
Q ss_pred eccCCCCCCCcceEEEEe
Q psy6001 309 IRSDVQGSTHCPVVLRLS 326 (327)
Q Consensus 309 ~~~~~~~SDH~pV~~~~~ 326 (327)
+.....+|||+||++++.
T Consensus 239 i~~~~~~SDH~Pv~~~~~ 256 (265)
T 3g91_A 239 ILSDVMGSDHCPIGLEIE 256 (265)
T ss_dssp ECTTCCSSSBCCEEEEEE
T ss_pred EeCCCCCCCcceEEEEhh
Confidence 987777899999999985
No 2
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=100.00 E-value=2e-41 Score=303.97 Aligned_cols=254 Identities=45% Similarity=0.866 Sum_probs=194.2
Q ss_pred CceEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCe-EEEEEc-cCC-ceeeEEEEEee
Q psy6001 70 TKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHY-HMFWIG-SDK-GQGGVGLLTKE 146 (327)
Q Consensus 70 ~~l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy-~~~~~~-~~~-~~~Gvai~~k~ 146 (327)
..|+|+||||++++...++. ++++|+.++||||||||+......+...+.. ..|| +.++.. ... ++.|+||++|.
T Consensus 60 ~~lrv~t~Nv~g~~~~~~~~-i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~-~~gy~~~~~~~~~~~~g~~Gvailsr~ 137 (318)
T 1hd7_A 60 ATLKICSWNVDGLRAWIKKK-GLDWVKEEAPDILCLQETKCSENKLPAELQE-LPGLSHQYWSAPSDKEGYSGVGLLSRQ 137 (318)
T ss_dssp CCEEEEEEECSSHHHHHHTT-HHHHHHHHCCSEEEEECCCCCC------------CCCEEEEECC-----CCCEEEEESS
T ss_pred CceEEEEEecCcchhhhhhh-HHHHHHhhCCCEEEEEEccCchhhccHHHHh-cCCCceEEEecCCCCCccceEEEEEcC
Confidence 34999999999987665444 9999999999999999998655434322433 5789 677665 223 66799999999
Q ss_pred CcceeEeCCCCC-CCCcCcEEEEEeCcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy6001 147 KPLTVKYGIPGV-SNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQ 225 (327)
Q Consensus 147 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~ 225 (327)
+++.+..+++.. .+..+|++.+.+..+.++++|+|+.....++.+.|..|++.|.+++. .+....|+|||||||+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~r~l~~~~~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~-~~~~~~pvIl~GDFN~~~~ 216 (318)
T 1hd7_A 138 CPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLK-GLASRKPLVLCGDLNVAHE 216 (318)
T ss_dssp CCSEEEESCSCGGGSSSSCEEEEECSSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHH-HHHHHSCEEEEEECSCCCS
T ss_pred CceeEEecCCCcccCCCCcEEEEEcCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHH-hcccCCCEEEEeeCCCCCh
Confidence 988876665544 56678899999999999999999887665667778899999998887 4433489999999999988
Q ss_pred cccccCCCCCcccCCCCHHHHHHH-HHHhcCCceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhccc
Q psy6001 226 SIDLANPDKNVKTAGYTVEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNI 304 (327)
Q Consensus 226 ~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~ 304 (327)
..|.+++..+.+..++.+.++..+ ..++..||.|+|+..++.....||||+++. ..+..+.++||||||+++.+...+
T Consensus 217 ~~D~~~~~~~~~~~g~~~~~~~~~~~~ll~~~l~D~~r~~~p~~~~~~T~~~~~~-~~~~~~~~~rID~il~s~~~~~~v 295 (318)
T 1hd7_A 217 EIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMM-NARSKNVGWRLDYFLLSHSLLPAL 295 (318)
T ss_dssp GGGBSCHHHHTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCTTCCSBCCSGG-GHHHHTCCBCCEEEEECGGGGGGE
T ss_pred hhhccChhhcCCCCCcCHHHHHHHHHHHhhCCCEEeehhhCCCCCCCcceECCcC-CCcccCCceEEEEEEECHHHHhhh
Confidence 877766555555667788888888 888888999999988876543499998776 333334567999999999988777
Q ss_pred ceeeeccCCCCCCCcceEEEEeC
Q psy6001 305 KDCIIRSDVQGSTHCPVVLRLSL 327 (327)
Q Consensus 305 ~~~~~~~~~~~SDH~pV~~~~~l 327 (327)
.++.+.....+|||+||+++|.|
T Consensus 296 ~~~~v~~~~~~SDH~Pv~~~l~l 318 (318)
T 1hd7_A 296 CDSKIRSKALGSDHCPITLYLAL 318 (318)
T ss_dssp EEEEECTTCCSSSBCCEEEEECC
T ss_pred hheEeeccCCCCCccCEEEEecC
Confidence 78888876678999999999975
No 3
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=100.00 E-value=5.6e-40 Score=289.84 Aligned_cols=253 Identities=45% Similarity=0.870 Sum_probs=200.5
Q ss_pred ceEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCe-EEEEEc-cCC-ceeeEEEEEeeC
Q psy6001 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHY-HMFWIG-SDK-GQGGVGLLTKEK 147 (327)
Q Consensus 71 ~l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy-~~~~~~-~~~-~~~Gvai~~k~~ 147 (327)
.|+|+||||+++....++. ++++|+.++||||||||+......+...+.. ..|| +.++.. ... ++.|+||++|.+
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~-i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~-~~gy~~~~~~~~~~~~g~~Gvailsr~~ 105 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKK-GLDWVKEEAPDILCLQETKCSENKLPAELQE-LPGLSHQYWSAPSDKEGYSGVGLLSRQC 105 (285)
T ss_dssp CEEEEEEECSSHHHHHHTT-HHHHHHHHCCSEEEEECCCCCTTSCCGGGGG-CGGGCEEEEECBC--CCSCCEEEEESSC
T ss_pred ceEEEEEecccChhhhhhh-HHHHHHhcCCCEEEEEEeecchhhccHHHHh-ccCCcEEEEecccCCcccceEEEEEccC
Confidence 4999999999987665444 9999999999999999998665444433443 5789 677665 223 567999999999
Q ss_pred cceeEeCCCCC-CCCcCcEEEEEeCcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCc
Q psy6001 148 PLTVKYGIPGV-SNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQS 226 (327)
Q Consensus 148 ~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~ 226 (327)
++.+...++.. .+..+|++.+.+..+.++++|+|+.....++.++|..|++.|.+.+. .+....|+|||||||+.+..
T Consensus 106 ~~~~~~~~~~~~~~~~~r~l~~~~~~~~v~~~h~p~~~~~~~~~~~r~~~~~~l~~~l~-~~~~~~p~Il~GDFN~~~~~ 184 (285)
T 2o3h_A 106 PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLK-GLASRKPLVLCGDLNVAHEE 184 (285)
T ss_dssp CSEEEESCSCGGGSSBCCEEEEECSSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHH-HHHTTSCEEEEEECSCCCSG
T ss_pred hHHeeeccCCcccCCCCcEEEEEeCCEEEEEEEcCCCCCcchhHHHHHHHHHHHHHHHH-hhccCCCEEEEEECCCCCch
Confidence 88776655444 55678888888899999999999887666677778899999999888 55446899999999999888
Q ss_pred ccccCCCCCcccCCCCHHHHHHH-HHHhcCCceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhcccc
Q psy6001 227 IDLANPDKNVKTAGYTVEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305 (327)
Q Consensus 227 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~~ 305 (327)
.|.+++..+....++.+.+...+ ..+++.||.|+|+..++.....|||++.+. ..+..+.+.||||||+++.+...+.
T Consensus 185 ~D~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~D~~~~~~~~~~~~~T~~~~~~-~~~~~~~~~rID~i~~s~~~~~~v~ 263 (285)
T 2o3h_A 185 IDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMM-NARSKNVGWRLDYFLLSHSLLPALC 263 (285)
T ss_dssp GGBSCTTTCTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCCSCCSBCCSST-THHHHTCCBCCEEEEECGGGGGGEE
T ss_pred hhccChhhcCCCCCcCHHHHHHHHHHHhcCCCEEEEEecCCCCCCcEeEecCcC-CccccCceeEEEEEEECHHHHhhhh
Confidence 88776766666667788888888 888888999999988776543499998776 3322345679999999999887777
Q ss_pred eeeeccCCCCCCCcceEEEEeC
Q psy6001 306 DCIIRSDVQGSTHCPVVLRLSL 327 (327)
Q Consensus 306 ~~~~~~~~~~SDH~pV~~~~~l 327 (327)
++.+.....+|||+||+++|.+
T Consensus 264 ~~~v~~~~~~SDH~pv~~~l~l 285 (285)
T 2o3h_A 264 DSKIRSKALGSDHCPITLYLAL 285 (285)
T ss_dssp EEEECTTCCSSSBCCEEEEECC
T ss_pred heEeeccCCCCCeecEEEEecC
Confidence 8888876668999999999975
No 4
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=100.00 E-value=1.6e-40 Score=309.51 Aligned_cols=255 Identities=33% Similarity=0.589 Sum_probs=198.8
Q ss_pred CceEEEEEEcCCchhhhhh--hhHHHHHHhcCCCEEEEeeeecCCCCcch--hhhcccCCeEEEEEcc--CCceeeEEEE
Q psy6001 70 TKVKVSTWNVNGLRACVKK--NACVEYILEENPDIMALQQIRCQEDEVPE--SFRKSLSHYHMFWIGS--DKGQGGVGLL 143 (327)
Q Consensus 70 ~~l~i~s~Ni~~~~~~~~~--~~i~~~i~~~~~DIl~LQEv~~~~~~~~~--~l~~~~~gy~~~~~~~--~~~~~Gvai~ 143 (327)
..|||+||||++++...++ ..+.++|+.++||||||||++.....+.. .|.. ..||+.++... ..+++|+|||
T Consensus 148 ~~LKI~TwNVnGl~~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~~~~la~-~~GY~~~~~~~~~~~g~~GVAIl 226 (467)
T 2j63_A 148 RMYKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGV-VDGYSFVDHPCAFKRGYSGTRTY 226 (467)
T ss_dssp TEEEEEEEECSCHHHHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSC-CTTEEEEEECCSSSTTSCCEEEE
T ss_pred CCeEEEEEEcCCCcccccccHHHHHHHHHHcCCCEEEEEecccchhccchHHHHhh-cCCceEEEecccCCCCcceEEEE
Confidence 4599999999999766543 35999999999999999999866544432 1332 47998887753 3378899999
Q ss_pred EeeCcc------eeEeCCCC-----------------C-CCCcCcEEEEEe----------CcEEEEEEeccCCCCcchh
Q psy6001 144 TKEKPL------TVKYGIPG-----------------V-SNQRGRVITAKF----------KRFTFITVYVPNSGIKLKA 189 (327)
Q Consensus 144 ~k~~~~------~~~~~~~~-----------------~-~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~ 189 (327)
+|++++ ....++.. . .+..+|++.+.+ ..+.++++|+|+.....++
T Consensus 227 sR~pi~~~~l~~~~~~~~~~p~~~~~~~~~gs~~~~~~~~D~egR~I~a~~~~~g~~~~~~~~~~vinvYlP~~~~~~~r 306 (467)
T 2j63_A 227 MKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPDSASSSSRIALVNTYVANSGMGLTR 306 (467)
T ss_dssp EECCCCCCTSCCEEEESSCCCCC-----------CCCCCCCTTCCEEEEEECSSCCC----CCEEEEEEECCCCCTTSTT
T ss_pred EeCCccccccceeeeeccccccccccccccccccccccccCCCCcEEEEEEEeCCcccccCceEEEEEEECCCCCcchHH
Confidence 999874 23334421 1 456789998888 5799999999998766666
Q ss_pred hHHHHH-HHHHHHHHHHHHhc-------------------CCCcEEEEccCCCCCCcccccC---CCCCcccCCCCHHHH
Q psy6001 190 IDFRMI-WDQHFYDYIQSELR-------------------SNSNIIISGDLNVCLQSIDLAN---PDKNVKTAGYTVEER 246 (327)
Q Consensus 190 ~~~r~~-~~~~l~~~l~~~~~-------------------~~~~~Ii~GDFN~~~~~~d~~~---~~~~~~~~~~~~~~~ 246 (327)
+.+|+. +++.|.+++. .+. ...|+|||||||+.+.+.|.++ +..+.+..++.++++
T Consensus 307 ~~~K~~~~~~~L~~~l~-~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p~~~D~~~~~~~~~~~~~~gf~~~er 385 (467)
T 2j63_A 307 LPYRVQSFDPSMREYLH-RLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKSMQECSGFAPEER 385 (467)
T ss_dssp HHHHHHTHHHHHHHHHH-HHHHHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCCCSCHHHHTTSTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HhhhhcccccccchhhhhcccccCCcEEEeccccCCCchhhhccccchhhcccccccCHHHH
Confidence 677763 5567777776 332 3689999999999998888766 334455567889999
Q ss_pred HHHHHHhc-CCceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhcccceeeeccCCCCCCCcceEEEE
Q psy6001 247 RNFRELLD-TGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRL 325 (327)
Q Consensus 247 ~~~~~~~~-~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~~~~~~~~~~SDH~pV~~~~ 325 (327)
.+|..++. .||.|+|+.+++...+.||||+++. ..+..+.++||||||+++.+...+.++.+.....+|||+||+++|
T Consensus 386 ~~~~~lL~~~gL~DafR~~~p~~~~~yTw~s~r~-~~~~~n~g~RIDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l 464 (467)
T 2j63_A 386 MSFRETMQRTNSVDIFRQLYPQAGPVYSFWSQRI-NGRPRNLGWRLDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWM 464 (467)
T ss_dssp HHHHHHHHHTTEEEHHHHHCTTBCSCCSBCCTTT-TTTTTTCCBCCEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEE
T ss_pred HHHHHHHhhCCCEEehHhhCCCCCCCccccCCCC-CcccCCCCceeEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEE
Confidence 99999885 5999999999886544699999987 666667789999999999998888888888777899999999999
Q ss_pred eC
Q psy6001 326 SL 327 (327)
Q Consensus 326 ~l 327 (327)
.+
T Consensus 465 ~~ 466 (467)
T 2j63_A 465 RH 466 (467)
T ss_dssp EC
T ss_pred Ec
Confidence 74
No 5
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=100.00 E-value=1.6e-39 Score=282.47 Aligned_cols=253 Identities=31% Similarity=0.576 Sum_probs=200.1
Q ss_pred ceEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccCC-ceeeEEEEEeeCcc
Q psy6001 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK-GQGGVGLLTKEKPL 149 (327)
Q Consensus 71 ~l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~~-~~~Gvai~~k~~~~ 149 (327)
+|||+||||+++....++ .+.++|+.++||||||||+......+...+.. ..||..++..... ++.|+||++|.++.
T Consensus 1 ml~v~t~Ni~~~~~~~~~-~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~-~~gy~~~~~~~~~~~~~G~ailsr~~~~ 78 (259)
T 2jc5_A 1 MLKIISANVNGIRSAYKK-GFYEYIAASGADIVCVQELKAQEADLSADMKN-PHGMHGHWHCAEKRGYSGVAVYSKRKPD 78 (259)
T ss_dssp CEEEEEEECSSHHHHHHT-THHHHHHHTTCSEEEEECCCCCGGGCCHHHHS-GGGCEEEEECCSSTTCCCEEEEESSCCS
T ss_pred CcEEEEEeeccHHHHHHh-HHHHHHHhcCCCEEEEEEecchhhccChhhcc-ccCCeEEEeccCCCCcceEEEEEecCce
Confidence 389999999998765544 39999999999999999998665444443432 5789877775333 67899999999988
Q ss_pred eeEeCCCCC-CCCcCcEEEEEeCcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCccc
Q psy6001 150 TVKYGIPGV-SNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSID 228 (327)
Q Consensus 150 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~~d 228 (327)
.....++.. .+..++++.+.++.+.++++|+|+.....++..+|..|++.+.+.+.+......|+|||||||+.++..|
T Consensus 79 ~~~~~~~~~~~~~~~r~~~~~~~~~~v~~~h~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d 158 (259)
T 2jc5_A 79 NVQIGMGIEEFDREGRFVRCDFGRLSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNID 158 (259)
T ss_dssp EEEESCSCHHHHTTCCEEEEEETTEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCCSGGG
T ss_pred eEEeCCCCCccCCCCeEEEEEcCCEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCchhh
Confidence 776655443 4567788889999999999999988766666777778888998888732235889999999999998888
Q ss_pred ccCCCCCcccCCCCHHHHHHHHHHh-cCCceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhccccee
Q psy6001 229 LANPDKNVKTAGYTVEERRNFRELL-DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC 307 (327)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~~ 307 (327)
...+..+....++.+.+...+..++ ..|+.|+|+..++...+ ||||+.+. .......+.||||||+++.+...+.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~d~~~~~~~~~~~-~T~~~~~~-~~~~~~~~~rID~i~~s~~~~~~~~~~ 236 (259)
T 2jc5_A 159 LKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPG-YTWWSNRG-QAYAKDVGWRIDYQMVTPELAAKAVSA 236 (259)
T ss_dssp BSCSTTCTTSTTSCHHHHHHHHHHHHTTCCEEHHHHHCTTCCC-CCEESCSS-HHHHTTCEECCEEEEECHHHHTTEEEE
T ss_pred ccChhhcCCCCCcCHHHHHHHHHHhccCCcEEeeHhhCCCCCC-ccEECCcC-CCccCCCeeEEEEEEECHHHHhHHhhe
Confidence 7777666666677888888899888 56999999988876555 99998766 333334567999999999888667788
Q ss_pred eeccCCCCCCCcceEEEEeC
Q psy6001 308 IIRSDVQGSTHCPVVLRLSL 327 (327)
Q Consensus 308 ~~~~~~~~SDH~pV~~~~~l 327 (327)
.+.....+|||+||+++|.+
T Consensus 237 ~v~~~~~~SDH~pv~~~l~~ 256 (259)
T 2jc5_A 237 HVYKDEKFSDHAPLVVEYDY 256 (259)
T ss_dssp EECCSSCCSSBCCEEEEESC
T ss_pred eecCCCCCCCcccEEEEEec
Confidence 88766778999999999975
No 6
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=100.00 E-value=4.8e-39 Score=279.38 Aligned_cols=249 Identities=29% Similarity=0.586 Sum_probs=194.8
Q ss_pred ceEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcch-hhhcccCCeEEEEEccCCceeeEEEEEeeCcc
Q psy6001 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPE-SFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPL 149 (327)
Q Consensus 71 ~l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~-~l~~~~~gy~~~~~~~~~~~~Gvai~~k~~~~ 149 (327)
+|||+||||++++...+. +.++|+.++||||||||+......+.. .+. ..||+.++.. ..++.|+||++|.++.
T Consensus 1 mlrv~t~Nv~g~~~~~~~--i~~~i~~~~~Dii~lQE~~~~~~~~~~~~~~--~~gy~~~~~~-~~~~~G~ailsr~~~~ 75 (257)
T 2voa_A 1 MLKIATFNVNSIRSRLHI--VIPWLKENKPDILCMQETKVENRKFPEADFH--RIGYHVVFSG-SKGRNGVAIASLEEPE 75 (257)
T ss_dssp CEEEEEEECSCGGGTHHH--HHHHHHHHCCSEEEEECCCCCGGGCCHHHHH--TTTCEEEEEE-ETTEEEEEEEESSCCE
T ss_pred CeEEEEEecCChHHHHHH--HHHHHhhcCCCEEEEEEeecchhhcCHHHhh--hCCCcEEEcC-CCCccEEEEEEccChH
Confidence 389999999998766554 999999999999999999865443433 344 6899877653 4467899999999876
Q ss_pred eeEeCCCCC-CCCcCcEEEEEeCcEEEEEEeccCCCC-cchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCcc
Q psy6001 150 TVKYGIPGV-SNQRGRVITAKFKRFTFITVYVPNSGI-KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSI 227 (327)
Q Consensus 150 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~~ 227 (327)
.+...++.. .+ .+|++.+.++.+.++++|+|+... ..++.+.|..+++.|.+.+.+......|+|||||||+.+.+.
T Consensus 76 ~~~~~~~~~~~~-~~r~l~~~~~~~~v~~~h~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~ 154 (257)
T 2voa_A 76 DVSFGLDSEPKD-EDRLIRAKIAGIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPI 154 (257)
T ss_dssp EEEESCSSSSCC-GGGEEEEEETTEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECSCCCSGG
T ss_pred HheecCCCCccc-cCcEEEEEECCEEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeeCCCCCchh
Confidence 655555433 34 778888899999999999998764 345666777888888888873224678999999999999888
Q ss_pred cccCCCCCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCC-CCCCccCCCccceeEEEEeCcchhcccce
Q psy6001 228 DLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSF-RNKSARLNNKGWRLDYHLVSEQLANNIKD 306 (327)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~riD~il~s~~~~~~~~~ 306 (327)
|..++..+.+..++.+.++..+..+++.||.|+|+..++... .||||+. +. ..+....++||||||+++.+...+..
T Consensus 155 d~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~~~~~p~~~-~~T~~~~~~~-~~~~~~~~~rID~i~~s~~~~~~~~~ 232 (257)
T 2voa_A 155 DVHSPDKLKNHVCFHEDARRAYKKILELGFVDVLRKIHPNER-IYTFYDYRVK-GAIERGLGWRGDAILATPPLAERCVD 232 (257)
T ss_dssp GBSCGGGCTTSTTTCHHHHHHHHHHHTTTCEEHHHHHSTTCC-CCSBCCTTST-TTTTTTCCBCCEEEEECHHHHTTEEE
T ss_pred hccChhHhCCCCCCCHHHHHHHHHHHHcCcEeeehhhCCCCC-CcceeccccC-CceecCceEEEEEEEECHHHHhhhhe
Confidence 877666666666778888888998888899999998887654 5999988 55 44444567899999999998876777
Q ss_pred eeeccC----CCCCCCcceEEEEeC
Q psy6001 307 CIIRSD----VQGSTHCPVVLRLSL 327 (327)
Q Consensus 307 ~~~~~~----~~~SDH~pV~~~~~l 327 (327)
+.+... ..+|||+||+++|++
T Consensus 233 ~~v~~~~~~~~~~SDH~pv~~~l~~ 257 (257)
T 2voa_A 233 CYADIKPRLAEKPSDHLPLVAVFDV 257 (257)
T ss_dssp EEECCHHHHSSSCCSBCCEEEEECC
T ss_pred eEeehhhccCCCCCCccCEEEEEeC
Confidence 777653 357999999999975
No 7
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=100.00 E-value=1.6e-38 Score=275.74 Aligned_cols=249 Identities=27% Similarity=0.562 Sum_probs=193.9
Q ss_pred eEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcch-hhhcccCCeEEEEEccCCceeeEEEEEeeCcce
Q psy6001 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPE-SFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLT 150 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~-~l~~~~~gy~~~~~~~~~~~~Gvai~~k~~~~~ 150 (327)
|||+||||+++...... +.++|+.++||||||||+......+.. .+. ..||..++.. ..++.|+||++|.++..
T Consensus 1 lrv~t~Nv~~~~~~~~~--i~~~i~~~~~DIv~LQE~~~~~~~~~~~~~~--~~gy~~~~~~-~~~~~G~ailsr~~~~~ 75 (256)
T 2jc4_A 1 MKITTWNVNSLNVRLPQ--VQNLLADNPPDILVLQELKLDQDKFPAAALQ--MMGWHCVWSG-QKTYNGVAIVSRSVPQD 75 (256)
T ss_dssp CEEEEEECSCHHHHHHH--HHHHHHSSCCSEEEEECCCSCGGGSCHHHHH--TTTCEEEEEC-CSSSCCEEEEESSCCEE
T ss_pred CEEEEEEcCCcHHHHHH--HHHHHHhcCCCEEEEEeeccchhcCCHhHHh--hcCCeEEECC-CCcceEEEEEECCChHH
Confidence 68999999998766554 999999999999999999865543333 344 6899877653 34567999999998776
Q ss_pred eEeCCCCC-CCCcCcEEEEEeCcEEEEEEeccCCCC-cchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCccc
Q psy6001 151 VKYGIPGV-SNQRGRVITAKFKRFTFITVYVPNSGI-KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSID 228 (327)
Q Consensus 151 ~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~~d 228 (327)
....++.. .+..++++.+.++.+.++++|+|+... ..++.+.|..|++.|.+.+.+......|+|||||||+.+.+.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~il~GDFN~~~~~~d 155 (256)
T 2jc4_A 76 VHFGLPALPDDPQRRVIAATVSGVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADAD 155 (256)
T ss_dssp EEESCTTSTTCCSCCEEEEEETTEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGG
T ss_pred heecCCCCccCCcCcEEEEEeCCEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCchhh
Confidence 65555443 456778888889999999999998765 3356667788899999888832257899999999999988777
Q ss_pred ccCCCCCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhcccceee
Q psy6001 229 LANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308 (327)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~~~ 308 (327)
..++..+.+..++.+.++..+..+++.|+.|+|+..++... .||||+++. +....+.+.||||||+++.+...+.++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~~~~~~~~~-~~T~~~~~~-~~~~~~~~~rID~i~~s~~~~~~~~~~~ 233 (256)
T 2jc4_A 156 CYDPEKWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGA-FYTWFDYRG-AMFQRKLGLRIDHILVSPAMAAALKDVR 233 (256)
T ss_dssp BSSGGGGTTCTTSCHHHHHHHHHHHTTTCEEHHHHHCCSSC-CCCBCCTTT-THHHHTCCBCCEEEEECHHHHTTEEEEE
T ss_pred ccChhHhCCCCCcCHHHHHHHHHHHhcCcEEhhhhhCCCCC-ceeeEcCCC-CccccCcEEEEEEEEECHHHHhheeEEE
Confidence 66555555666778888888998888899999998887654 499998766 3332345679999999998876677777
Q ss_pred eccC----CCCCCCcceEEEEeC
Q psy6001 309 IRSD----VQGSTHCPVVLRLSL 327 (327)
Q Consensus 309 ~~~~----~~~SDH~pV~~~~~l 327 (327)
+... ..+|||+||+++|++
T Consensus 234 v~~~~~~~~~~SDH~pv~~~l~l 256 (256)
T 2jc4_A 234 VDLETRALERPSDHAPVTAEFDW 256 (256)
T ss_dssp ECHHHHTSSSCCSBCCEEEEECC
T ss_pred EEhhcccCCCCCCcccEEEEecC
Confidence 7653 457999999999975
No 8
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=100.00 E-value=4e-37 Score=268.65 Aligned_cols=248 Identities=29% Similarity=0.521 Sum_probs=185.6
Q ss_pred eEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcch-hhhcccCCeEEEEEccCCceeeEEEEEeeCcce
Q psy6001 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPE-SFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLT 150 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~-~l~~~~~gy~~~~~~~~~~~~Gvai~~k~~~~~ 150 (327)
|||+||||++++..... +.++|+..+||||||||+......+.. .+. ..||..++.. ..++.|+||++|.+++.
T Consensus 1 lrv~t~Nv~~~~~~~~~--i~~~i~~~~~Dii~LQE~~~~~~~~~~~~l~--~~gy~~~~~~-~~~~~G~ailsr~~~~~ 75 (268)
T 1ako_A 1 MKFVSFNINGLRARPHQ--LEAIVEKHQPDVIGLQETKVHDDMFPLEEVA--KLGYNVFYHG-QKGHYGVALLTKETPIA 75 (268)
T ss_dssp CEEEEEECSCGGGCHHH--HHHHHHHHCCSEEEEECCCCCGGGCCHHHHH--HTTCEEEEEE-ETTEEEEEEEESSCCSE
T ss_pred CEEEEEehhHHHHHHHH--HHHHHHHcCCCEEEEEeccCChhhCCHhHhc--cCCCcEEEeC-CCCcceEEEEEecCcce
Confidence 68999999998765444 999999999999999999865544433 244 5799877763 34668999999999888
Q ss_pred eEeCCCCC-CCCcCcEEEEEe----CcEEEEEEeccCCCCcc--hhhHHHHHHHHHHHHHHHHHh-cCCCcEEEEccCCC
Q psy6001 151 VKYGIPGV-SNQRGRVITAKF----KRFTFITVYVPNSGIKL--KAIDFRMIWDQHFYDYIQSEL-RSNSNIIISGDLNV 222 (327)
Q Consensus 151 ~~~~~~~~-~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~l~~~l~~~~-~~~~~~Ii~GDFN~ 222 (327)
....++.. ....++++.+.+ ..+.++++|+|+..... ++.+.|..|++.+.+.++ .. ....|+|||||||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~-~~~~~~~~~Il~GDFN~ 154 (268)
T 1ako_A 76 VRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLE-TELKRDNPVLIMGDMNI 154 (268)
T ss_dssp EEESSTTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHH-HHCCTTSCEEEEEECCC
T ss_pred eeeCCCCcccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHH-HhhhCCCCEEEEeECCC
Confidence 76655432 234566666655 36999999999876422 345678889999999988 44 56889999999999
Q ss_pred CCCcccccCCCCC------cccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEe
Q psy6001 223 CLQSIDLANPDKN------VKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLV 296 (327)
Q Consensus 223 ~~~~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~ 296 (327)
.+.+.+......+ .+..++.+.++..+..+.+.||.|+|+..++.....||||+++. ..++.+.++||||||+
T Consensus 155 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~gl~D~~~~~~~~~~~~~T~~~~~~-~~~~~~~~~riD~il~ 233 (268)
T 1ako_A 155 SPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRS-KGFDDNRGLRIDLLLA 233 (268)
T ss_dssp CCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHTTEEEHHHHHSTTCCSCCSBCCTTT-THHHHTCCBCCEEEEE
T ss_pred CCchhcccCcccChhhhccCCCcCcCHHHHHHHHHHhcCCCEEeEhhhCCCCCCCeeEeCCcC-CccccCceEEEEEEEe
Confidence 9887665332111 13445677778888888888999999998887555699998876 3333335679999999
Q ss_pred CcchhcccceeeeccC----CCCCCCcceEEEEe
Q psy6001 297 SEQLANNIKDCIIRSD----VQGSTHCPVVLRLS 326 (327)
Q Consensus 297 s~~~~~~~~~~~~~~~----~~~SDH~pV~~~~~ 326 (327)
++.+...+..+.+... ..+|||+||+++|+
T Consensus 234 s~~~~~~~~~~~i~~~~~~~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 234 SQPLAECCVETGIDYEIRSMEKPSDHAPVWATFR 267 (268)
T ss_dssp EHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEEC
T ss_pred CHHHHHHHHhceechhhcCCCCCCCcccEEEEcc
Confidence 9988777667776543 25799999999986
No 9
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=100.00 E-value=2.7e-34 Score=246.19 Aligned_cols=225 Identities=21% Similarity=0.397 Sum_probs=164.1
Q ss_pred ceEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEE-EccCCceeeEEEEEeeC-c
Q psy6001 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW-IGSDKGQGGVGLLTKEK-P 148 (327)
Q Consensus 71 ~l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~-~~~~~~~~Gvai~~k~~-~ 148 (327)
+|||+||||+|++...+...+.++|+.++||||||||++.....+.. +. ..||..++ ..+..+..|+||++|.+ +
T Consensus 7 ~lri~t~Nv~g~~~~~~~~~~~~~i~~~~~DIv~LQE~~~~~~~~~~-l~--~~~y~~~~~~~~~~~~~Gvail~r~~~~ 83 (238)
T 1vyb_A 7 HITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHR-LK--IKGWRKIYQANGKQKKAGVAILVSDKTD 83 (238)
T ss_dssp CEEEEEEECSCCCSHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGG-CC--CTTCCEEEEECCSSSSCCEEEEECTTCC
T ss_pred cceEEEEecccCCchhhHHHHHHHHHHcCCCEEEEecccCCCCCchh-Hh--hCCCCeEEEccCCCCCceEEEEEeCCCC
Confidence 49999999999987765556999999999999999999865444433 43 57886654 43334557999999987 4
Q ss_pred ceeEeCCCCCCCCcCcEEEEEe----CcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy6001 149 LTVKYGIPGVSNQRGRVITAKF----KRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCL 224 (327)
Q Consensus 149 ~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~ 224 (327)
+.... . ..+..++++.+.+ ..+.++++|+|+.... .+++.+.+.+. . ....|+|||||||+.+
T Consensus 84 ~~~~~-~--~~~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~~--------~~~~~l~~~l~-~-~~~~~~Il~GDFN~~~ 150 (238)
T 1vyb_A 84 FKPTK-I--KRDKEGHYIMVKGSIQQEELTILNIYAPNTGAP--------RFIKQVLSDLQ-R-DLDSHTLIMGDFNTPL 150 (238)
T ss_dssp CEEEE-E--EECTTSSEEEEEEEETTEEEEEEEEECCSSSHH--------HHHHHHHHHTT-T-TCCTTEEEEEECSSCS
T ss_pred ccccc-e--eEcCCCcEEEEEEEeCCCcEEEEEEecCCCCcH--------HHHHHHHHHHH-h-ccCCCEEEEccCCCCC
Confidence 44322 1 1345677776655 3589999999976431 24455555555 2 2468999999999987
Q ss_pred CcccccCCCCCcccCCCCHHHHHHHHHHh-cCCceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhcc
Q psy6001 225 QSIDLANPDKNVKTAGYTVEERRNFRELL-DTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANN 303 (327)
Q Consensus 225 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~ 303 (327)
..++... .++.+.+...+..++ +.||.|+|+..++...+ |||++.+. ....||||||+++.+...
T Consensus 151 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~-~T~~~~~~------~~~~rID~i~~s~~~~~~ 216 (238)
T 1vyb_A 151 STLDRST-------RQKVNKDTQELNSALHQADLIDIYRTLHPKSTE-YTFFSAPH------HTYSKIDHIVGSKALLSK 216 (238)
T ss_dssp SGGGBTT-------CCCCCHHHHHHHHHHHHTTEEEHHHHHCTTCCC-CSEEETTT------TEEECCEEEEEEGGGGGG
T ss_pred CccccCC-------CCCCcHHHHHHHHHHhhCCCEEhhHhhCCCCCc-eeEEcCCC------CcccceEEEEeCHHHHhh
Confidence 7655432 233456677788877 45999999988776554 99998766 346799999999998877
Q ss_pred cceeeeccCCCCCCCcceEEEEe
Q psy6001 304 IKDCIIRSDVQGSTHCPVVLRLS 326 (327)
Q Consensus 304 ~~~~~~~~~~~~SDH~pV~~~~~ 326 (327)
+.++.+.. ..+|||+||+++|+
T Consensus 217 ~~~~~v~~-~~~SDH~pv~~~l~ 238 (238)
T 1vyb_A 217 CKRTEIIT-NYLSDHSAIKLELR 238 (238)
T ss_dssp EEEEEEEC-CSSSSSCEEEEEEC
T ss_pred hhhceeec-CCCCCcccEEEEeC
Confidence 77777774 46799999999984
No 10
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.98 E-value=4.1e-31 Score=240.31 Aligned_cols=225 Identities=18% Similarity=0.223 Sum_probs=146.9
Q ss_pred CCceEEEEEEcCCchh---hhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccCCceeeEEEEEe
Q psy6001 69 TTKVKVSTWNVNGLRA---CVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTK 145 (327)
Q Consensus 69 ~~~l~i~s~Ni~~~~~---~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~~~~~Gvai~~k 145 (327)
...||||||||+|+.. ..+...|+++|+.++|||||||||.... +.. |.....+|..++ .+.++++|+||++|
T Consensus 117 ~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~--~~~-l~~~~~~y~~~~-~~~~~~~G~aIlsk 192 (362)
T 4gew_A 117 GFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRD--LAP-IDKLQSLYKIYY-SNKGCQYYTAILVS 192 (362)
T ss_dssp TCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTT--CHH-HHGGGGTEEEEE-SSTTSSSEEEEEEE
T ss_pred CCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEcCChhH--hHH-HHHhcCCceEEe-CCCCCCceEEEEEe
Confidence 3459999999998743 3344459999999999999999996332 322 443245665544 34455679999999
Q ss_pred eCcceeEeC-CCCC-CCCcCcEE--EEEeC--cEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHH--hcCCCcEEEE
Q psy6001 146 EKPLTVKYG-IPGV-SNQRGRVI--TAKFK--RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSE--LRSNSNIIIS 217 (327)
Q Consensus 146 ~~~~~~~~~-~~~~-~~~~~~~i--~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~~~~~Ii~ 217 (327)
+++...... ++.. ......++ .+... .+.++++|+++.... ...|..|+..+...+... ...+.|+|+|
T Consensus 193 ~~i~~~~~~~~~~~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~---~~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~ 269 (362)
T 4gew_A 193 KMFDVEKHDVIHFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREH---RPQRCAQFGFCMDKVREIIAQNPGALVFFG 269 (362)
T ss_dssp TTEEEEEEEEEECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG---HHHHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred ccCccccccccCCCCCcccceEEEEEEEECCEEEEEEEecCCccccc---hhHHHHHHHHHHHHhHhhhhcCCCCCeEEe
Confidence 874433221 1111 11222233 33443 489999999876443 334667777776666521 2678899999
Q ss_pred ccCCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCCCCCCccCC--CccceeEEEE
Q psy6001 218 GDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLN--NKGWRLDYHL 295 (327)
Q Consensus 218 GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~riD~il 295 (327)
||||..+..... ...|+.|+|+..++.....|||+...+ ..... ....||||||
T Consensus 270 GDFN~~p~~~~~-----------------------~~~gl~Da~~~~~~~~~~~~Tw~~~~n-~~~~~~~~~~~RIDyIf 325 (362)
T 4gew_A 270 GDLNLRDEEVSR-----------------------VPDGVKDAWEAAGSDNKTKFTWDTFKN-DNKQGFHGAKMRFDRLY 325 (362)
T ss_dssp EECCCCGGGCCC-----------------------CCTTCEEHHHHTTCCGGGCCSEETTTC-TTSCCSSCCEECCEEEE
T ss_pred ecCCCCCcccch-----------------------hcchHHHHHHHhCCCCCCCcCcccccC-cccccCCCCCcceEEEE
Confidence 999997544221 123799999988776555699998877 43322 3456999999
Q ss_pred eCcchhcccceeeecc-------CCCCCCCcceEEEEe
Q psy6001 296 VSEQLANNIKDCIIRS-------DVQGSTHCPVVLRLS 326 (327)
Q Consensus 296 ~s~~~~~~~~~~~~~~-------~~~~SDH~pV~~~~~ 326 (327)
+++.+... .+.+.. ...+|||+||+++|+
T Consensus 326 ~s~~l~~~--~~~vi~~~ri~~~~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 326 WSGPLDKV--KFTLEGRQRIRSCLCFPSDHWAINATFF 361 (362)
T ss_dssp EESSCCEE--EEEEECCSCCTTTSSCSCSSCEEEEEEE
T ss_pred EcCCccee--EEEEEeeeecCCCCCCCCcccCEEEEEc
Confidence 99876433 333321 123699999999996
No 11
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.97 E-value=2.6e-31 Score=228.25 Aligned_cols=210 Identities=13% Similarity=0.130 Sum_probs=143.1
Q ss_pred ceEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccCCceeeEEEEEeeCcce
Q psy6001 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLT 150 (327)
Q Consensus 71 ~l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~~~~~Gvai~~k~~~~~ 150 (327)
+|||+||||++++...+. +.++|++.+||||||||++. ..||+ +.. .+++|+||+++.+...
T Consensus 7 ~mki~s~Nvn~~r~~~~~--l~~~l~~~~~DIl~LQEt~~------------~~gy~--~~~--~~~~gvail~~~~~~~ 68 (240)
T 2ei9_A 7 RLRIGQINLGGAEDATRE--LPSIARDLGLDIVLVQEQYS------------MVGFL--AQC--GAHPKAGVYIRNRVLP 68 (240)
T ss_dssp EEEEEEEECTTCHHHHHT--HHHHHHHHTCSEEEEESCCT------------TSSSE--ECC--SSSCSEEEEESSTTSC
T ss_pred cceEEEEecCccHHHHHH--HHHHHHHcCCCEEEeecceE------------cCCce--Eec--cCCCCEEEEEecCCcc
Confidence 499999999999988766 99999999999999999951 34676 322 2457999999975444
Q ss_pred eEeCCCCCCCCcCcEEEEEeCcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCccccc
Q psy6001 151 VKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLA 230 (327)
Q Consensus 151 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~~d~~ 230 (327)
... +....+..++++.+....++++++|+|++... +++..+++.+...+. ..++|||||||+.+..+
T Consensus 69 ~~~-~~~~~~~~~~~i~i~~~~i~i~svY~P~~~~~----~~~~~~l~~l~~~~~-----~~~~Ii~GDfN~~~~~w--- 135 (240)
T 2ei9_A 69 CAV-LHHLSSTHITVVHIGGWDLYMVSAYFQYSDPI----DPYLHRLGNILDRLR-----GARVVICADTNAHSPLW--- 135 (240)
T ss_dssp EEE-CGGGCCSSEEEEEETTTTEEEEEEECCTTSCS----HHHHHHHHHHHHHTT-----TSCEEEEEECCCCCGGG---
T ss_pred eee-ecccCCCCEEEEEEeeccEEEEEEEcCCCCch----hHHHHHHHHHHHhcC-----CCcEEEEEecccccccc---
Confidence 332 11112344567777667899999999997643 345566666544332 47999999999986432
Q ss_pred CCCCCcccCCCCHHHHHHHHHHhcCCceeeEec--cCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhcccceee
Q psy6001 231 NPDKNVKTAGYTVEERRNFRELLDTGLVDAFRH--LYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308 (327)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~~~ 308 (327)
.+. ....++.+.++......+. ++.|.++. .++... .||||+++. ++||||+|+|+.+.. ..+.
T Consensus 136 ~~~--~~~~~~~~~~r~~~~~~l~-~~~d~~~l~~~~~~~~-~~T~~s~~~--------~~rID~~l~s~~l~~--~~~~ 201 (240)
T 2ei9_A 136 HSL--PRHYVGRGQEVADRRAKME-DFIGARRLVVHNADGH-LPTFSTANG--------ESYVDVTLSTRGVRV--SEWR 201 (240)
T ss_dssp TCC--HHHHSSSCHHHHHHHHHHH-HHHHHTTCEECCCTTC-CCSEEETTE--------EECCEEEEECTTCCE--EEEE
T ss_pred cCC--CCCCCCcchhhHHHHHHHH-HHHHhcCCEecCCCCC-CceEeCCCC--------ceEEEEEEecCcccc--CCeE
Confidence 221 1111334444433333332 56666553 244323 599998643 589999999998876 4566
Q ss_pred eccCCCCCCCcceEEEEe
Q psy6001 309 IRSDVQGSTHCPVVLRLS 326 (327)
Q Consensus 309 ~~~~~~~SDH~pV~~~~~ 326 (327)
+. ...+|||+||+++|.
T Consensus 202 i~-~~~~SDH~Pv~~~l~ 218 (240)
T 2ei9_A 202 VT-NESSSDHRLIVFGVG 218 (240)
T ss_dssp EC-SCCSSSBCCEEEEEE
T ss_pred EC-CCCCCCcccEEEEEC
Confidence 66 367899999999986
No 12
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.97 E-value=8.7e-30 Score=220.07 Aligned_cols=223 Identities=17% Similarity=0.214 Sum_probs=141.4
Q ss_pred ceEEEEEEcCCch---hhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccCCceeeEEEEEeeC
Q psy6001 71 KVKVSTWNVNGLR---ACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEK 147 (327)
Q Consensus 71 ~l~i~s~Ni~~~~---~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~~~~~Gvai~~k~~ 147 (327)
+||||||||+|+. ...+...|+++|+.++||||||||+.... +.. +.. ..+|..++.....+..|++|+++++
T Consensus 13 ~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~--~~~-l~~-~~~~~~~~~~~~~~~~g~~il~~~~ 88 (256)
T 4fva_A 13 EVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRD--LAP-IDK-LQSLYKIYYSNKGCQYYTAILVSKM 88 (256)
T ss_dssp EEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTT--CHH-HHG-GGGTEEEEESSTTSSSEEEEEEETT
T ss_pred EEEEEEEecCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEecChhH--hHH-HHH-hcCCceEeecCCCCCcceEEEEeec
Confidence 3999999999874 33444569999999999999999996332 222 443 3444455555555667999999987
Q ss_pred cceeEeC-CCCC-CCCcCcEE--EEEeC--cEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHH--HhcCCCcEEEEcc
Q psy6001 148 PLTVKYG-IPGV-SNQRGRVI--TAKFK--RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQS--ELRSNSNIIISGD 219 (327)
Q Consensus 148 ~~~~~~~-~~~~-~~~~~~~i--~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~--~~~~~~~~Ii~GD 219 (327)
....... ++.. .......+ .+... .+.++++|+++...... .+..|+..+.+.+.. ....+.|+|+|||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~---~~~~q~~~~~~~~~~~~~~~~~~~vIl~GD 165 (256)
T 4fva_A 89 FDVEKHDVIHFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHRP---QRCAQFGFCMDKVREIIAQNPGALVFFGGD 165 (256)
T ss_dssp CEEEEEEEEECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGHH---HHHHHHHHHHHHHHHHHHHSTTCEEEEEEE
T ss_pred ccceecccccCCCCcccceeEEEEEEeCCeEEEEEEecCCCCCcchH---HHHHHHHHHHHHhhhhhhccCCCcEEEecc
Confidence 5443221 1121 11122233 33333 48999999987654332 344455555544431 1267889999999
Q ss_pred CCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCCCCCCccCC--CccceeEEEEeC
Q psy6001 220 LNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLN--NKGWRLDYHLVS 297 (327)
Q Consensus 220 FN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~riD~il~s 297 (327)
||..+..... ...++.|+|+...+.....|||++..+ ..... ....||||||++
T Consensus 166 fN~~~~~~~~-----------------------~~~~~~d~~~~~~~~~~~~~T~~~~~~-~~~~~~~~~~~RiD~I~~~ 221 (256)
T 4fva_A 166 LNLRDEEVSR-----------------------VPDGVKDAWEAAGSDNKTKFTWDTFKN-DNKQGFHGAKMRFDRLYWS 221 (256)
T ss_dssp CCCCGGGCCC-----------------------CCTTCEEHHHHTTCCGGGCCSEETTTC-CSSCSCCSCEECCEEEEEE
T ss_pred CCCCcchhhh-----------------------hhcchhhHHHHhCCCCCCCcccccccC-cccccCCCCCcCeEEEEEc
Confidence 9987543221 112688999887766555599987766 32222 345689999999
Q ss_pred cchhcccceeeecc-------CCCCCCCcceEEEEe
Q psy6001 298 EQLANNIKDCIIRS-------DVQGSTHCPVVLRLS 326 (327)
Q Consensus 298 ~~~~~~~~~~~~~~-------~~~~SDH~pV~~~~~ 326 (327)
+.+... .+.+.. ...+|||+||+++|+
T Consensus 222 ~~~~~~--~~~~~~~~~~~~~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 222 GPLDKV--KFTLEGRQRIRSCLCFPSDHWAINATFF 255 (256)
T ss_dssp SSCCEE--EEEEECCSCCTTTCSCSCSSCEEEEEEE
T ss_pred CCceee--EEEEEeeEecCCCCCCcCcccCEEEEEc
Confidence 876432 333321 123699999999996
No 13
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.97 E-value=1.9e-29 Score=217.64 Aligned_cols=220 Identities=14% Similarity=0.133 Sum_probs=141.9
Q ss_pred ceEEEEEEcCCchhhhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccCC-ceeeEEEEEeeCcc
Q psy6001 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK-GQGGVGLLTKEKPL 149 (327)
Q Consensus 71 ~l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~~-~~~Gvai~~k~~~~ 149 (327)
.|||+||||++....... +.++|+..+||||||||++........ . ..||..++..... ++.|+||+++...+
T Consensus 19 ~lri~s~Nv~~~~~~~~~--l~~~i~~~~~DIv~lQE~~~~~~~~~~--~--~~gy~~~~~~~~~~~~~GvaIl~~~~~~ 92 (245)
T 1wdu_A 19 PYRVLQANLQRKKLATAE--LAIEAATRKAAIALIQEPYVGGAKSMK--G--FRGVRVFQSTAQGDGTVKAAIAVFDHDL 92 (245)
T ss_dssp CEEEEEEECTTCHHHHHH--HHHHHHHHTCSEEEEESCCC------C--C--CSSCEEEECCCCTTCCCCEEEEECCSSC
T ss_pred ceeeeeeeccccHHHHHH--HHHHHhhcCCCEEEEEcccccCCcccc--C--CCcceEeccccccCCCCCeEEEEECCCc
Confidence 399999999998776554 999999999999999999855432221 1 4688765543222 56799999977555
Q ss_pred eeEeCCCCCCCCcC-cEEEEEe--CcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCc
Q psy6001 150 TVKYGIPGVSNQRG-RVITAKF--KRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQS 226 (327)
Q Consensus 150 ~~~~~~~~~~~~~~-~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~ 226 (327)
.+.. .+. ....+ ..+.+.. ..+.++++|+|+.... ..+++.+.+.++ .+ ...|+|||||||+.+..
T Consensus 93 ~~~~-~~~-~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~~-------~~~~~~l~~~~~-~~-~~~~~Ii~GDfN~~~~~ 161 (245)
T 1wdu_A 93 DVIQ-YPQ-LTTNNIVVVGIRTRAWEITLVSYYFEPDKPI-------ESYLEQIKRVER-KM-GPKRLIFGGDANAKSTW 161 (245)
T ss_dssp EEEE-CTT-TCCSSEEEEEEECSSCEEEEEEEECCTTSCS-------HHHHHHHHHHHH-TT-CSSSEEEEEECCCCCGG
T ss_pred ceEE-ecc-cccCCEEEEEEEcCCCcEEEEEEEeCCCCCH-------HHHHHHHHHHHH-Hh-CCCcEEEEeccccCccc
Confidence 5432 221 12222 2233333 3699999999986531 234445555555 33 46799999999997644
Q ss_pred ccccCCCCCcccCCCCHHHHHHHHHHhcC-CceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhcccc
Q psy6001 227 IDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK 305 (327)
Q Consensus 227 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~~ 305 (327)
++. . ....+...+..++.. |+.. ..+ ...+|||+++. + ...++||||||+++.+...+.
T Consensus 162 ~~~-----~-----~~~~~~~~l~~~~~~~~l~~----~~~--~~~~T~~~~~~-~---~~~~~rID~i~~s~~~~~~v~ 221 (245)
T 1wdu_A 162 WGS-----K-----EDDARGDQLMGTLGELGLHI----LNE--GDVPTFDTIRG-G---KRYQSRVDVTFCTEDMLDLID 221 (245)
T ss_dssp GTC-----S-----SCCHHHHHHHHHHHHHTCEE----CCC--SCCCSEEC---------CCEECCEEEEECGGGBTTEE
T ss_pred CCC-----C-----CcCcchHHHHHHHHHCCcEE----ecC--CCCCcEECCCC-C---CCCCCEEEEEEeChHHHhhcc
Confidence 221 1 112334455555544 6643 222 22499998755 2 134789999999998877777
Q ss_pred eeeeccCCCCCCCcceEEEEeC
Q psy6001 306 DCIIRSDVQGSTHCPVVLRLSL 327 (327)
Q Consensus 306 ~~~~~~~~~~SDH~pV~~~~~l 327 (327)
.+.+.....+|||+||+++|++
T Consensus 222 ~~~v~~~~~~SDH~Pv~~~l~l 243 (245)
T 1wdu_A 222 GWRVDEDLVSSDHNGMVFNIRL 243 (245)
T ss_dssp EEEECTTSSSSSBCCEEEEECC
T ss_pred ceEEcCCCCCCCcccEEEEEEe
Confidence 8888766778999999999975
No 14
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.96 E-value=1.7e-28 Score=213.59 Aligned_cols=227 Identities=18% Similarity=0.231 Sum_probs=146.6
Q ss_pred ceEEEEEEcCCch---hhhhhhhHHHHHHhcCCCEEEEeeeecCCC-C--------------cchhhhcccC--CeEEEE
Q psy6001 71 KVKVSTWNVNGLR---ACVKKNACVEYILEENPDIMALQQIRCQED-E--------------VPESFRKSLS--HYHMFW 130 (327)
Q Consensus 71 ~l~i~s~Ni~~~~---~~~~~~~i~~~i~~~~~DIl~LQEv~~~~~-~--------------~~~~l~~~~~--gy~~~~ 130 (327)
+|||+||||++.. ...+...++++|+.++|||||||||..... . +...|.. .. +|..++
T Consensus 3 ~l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~-~~~~~y~~~~ 81 (266)
T 3teb_A 3 AMKILTVNVHAWLEENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQK-YTDTDYYLHW 81 (266)
T ss_dssp CEEEEEEECCTTCSTTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTT-TCCSCCEEEE
T ss_pred ceEEEEEecccccCcchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHH-hCCCCeEEEE
Confidence 4999999997652 233445599999999999999999973321 0 2234552 22 477654
Q ss_pred Ec---c-CCceeeEEEEEeeCcceeEe-CCCCC----CCCcCcEEEEEe----CcEEEEEEeccCCCCcchhhHHHHHHH
Q psy6001 131 IG---S-DKGQGGVGLLTKEKPLTVKY-GIPGV----SNQRGRVITAKF----KRFTFITVYVPNSGIKLKAIDFRMIWD 197 (327)
Q Consensus 131 ~~---~-~~~~~Gvai~~k~~~~~~~~-~~~~~----~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~r~~~~ 197 (327)
.. + ..+..|+||++|.++..... .++.. ....+.++.+.+ ..+.++++|++...... ..|..|+
T Consensus 82 ~~~~~~~~~~~~g~ailsr~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~---~~r~~q~ 158 (266)
T 3teb_A 82 SNSHIGFGKYNEGVAVITRHKIKAEDEFYCTFAQSVRTISARRIVSITINYEGQDIEFYSCHMNLPNCET---EDMGKNI 158 (266)
T ss_dssp EEEEECSTTEEEEEEEEESSCCSEEEEEECSSCCCTTCTTCCEEEEEEEEETTEEEEEEEEECCCTTCTT---CCHHHHH
T ss_pred eccccCccccCCeEEEEECceecCceeEEeCCCCCCCCcccceEEEEEEEeCCeEEEEEEecCCCccCCh---HHHHHHH
Confidence 32 2 23557999999998765432 12210 111234444443 35899999998764322 1356777
Q ss_pred HHHHHHHHHHhcCCCcEEEEccCCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCC
Q psy6001 198 QHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSF 277 (327)
Q Consensus 198 ~~l~~~l~~~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~ 277 (327)
+.+.+.+. . ..|+|||||||+.+.. ....+..++..|+.|+++...+...+ +||...
T Consensus 159 ~~l~~~~~---~-~~~~il~GDfN~~~~~------------------~~~~~~~l~~~~l~d~~~~~~~~~~~-~t~~~~ 215 (266)
T 3teb_A 159 QTILNRTQ---N-SNLKILMGDFNTDAIG------------------NVAAYENILSQGLFDTYVMAEKKDDG-ITVDKS 215 (266)
T ss_dssp HHHHTSSC---S-CCEEEEEEECCCCTTT------------------CHHHHHHHHTTTCEEHHHHCSEECCC-CCEECC
T ss_pred HHHHHHHh---c-CCcEEEEeECCCCCCC------------------CCcHHHhhccccccchHHhhccccCC-ccccCc
Confidence 77776665 2 7899999999997310 12455667777999999988776444 887433
Q ss_pred CCCCccCCCccceeEEEEeCcchhcccceeeeccC----CCCCCCcceEEEEeC
Q psy6001 278 RNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSD----VQGSTHCPVVLRLSL 327 (327)
Q Consensus 278 ~~~~~~~~~~~~riD~il~s~~~~~~~~~~~~~~~----~~~SDH~pV~~~~~l 327 (327)
.+ .........||||||+++.+. +..+.+... ..+|||+||+++|+|
T Consensus 216 ~~-~~~~~~~~~riD~i~~s~~~~--~~~~~v~~~~~~~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 216 IH-GWDNDKAKKRLDYIFSNKELK--VKESKVIFNNKNKEIVSDHFGIEVKIEF 266 (266)
T ss_dssp -------CTTEECCEEEEESSCCC--EEEEEEESSSSSSCCCSSSCEEEEEECC
T ss_pred cC-CcCcCCcCCeeEEEEeCCCeE--EEEEEEEeCCCCCCCcCCccCEEEEEEC
Confidence 33 222234567999999999775 445665542 346999999999975
No 15
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.96 E-value=3.5e-29 Score=216.15 Aligned_cols=230 Identities=17% Similarity=0.207 Sum_probs=139.5
Q ss_pred CCceEEEEEEcCCchh---hhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccCCceeeEEEEEe
Q psy6001 69 TTKVKVSTWNVNGLRA---CVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTK 145 (327)
Q Consensus 69 ~~~l~i~s~Ni~~~~~---~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~~~~~Gvai~~k 145 (327)
+.+||||||||+|+.. ..+...|+++|+.++|||||||||.... + ..|.....+| .++.....+ .|.+++++
T Consensus 7 ~~~l~v~swNi~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~--~-~~l~~~~~~~-~~~~~~~~~-~~~~~l~~ 81 (256)
T 4gz1_A 7 SSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPY--C-AYLKKRAASY-TIITGNEEG-YFTAILLK 81 (256)
T ss_dssp GGEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHH--H-HHHHHHCTTE-EEEESCSSS-SEEEEEEE
T ss_pred CCcEEEEEEEcCCCcCcCHHHHHHHHHHHHHHcCCCEEEEEcCCHHH--H-HHHHhhcccc-ceeeccccC-CceEEEEE
Confidence 3459999999998743 3344559999999999999999995321 2 2244212333 333323334 45667777
Q ss_pred eCcceeEeC-C-CCC-CCCcCcEEE--EEeC--cEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEc
Q psy6001 146 EKPLTVKYG-I-PGV-SNQRGRVIT--AKFK--RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISG 218 (327)
Q Consensus 146 ~~~~~~~~~-~-~~~-~~~~~~~i~--~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~G 218 (327)
.+++..... . ... .......+. +... .+.++++|+++.... ...|..|+..+.+.++ ....+.|+|+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~---~~~~~~q~~~~~~~l~-~~~~~~pvIl~G 157 (256)
T 4gz1_A 82 KGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH---SAERIRQLKTVLGKMQ-EAPDSTTVIFAG 157 (256)
T ss_dssp TTTEEEEEEEEEECTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG---HHHHHHHHHHHHHHHH-HSCTTSEEEEEE
T ss_pred eccccceecccccCCcccccceEEEEEEEeCCEEEEEEeecccccccc---hhhhhHHHHHHhhhhh-hccCcceEEEeC
Confidence 765553321 1 111 111222222 2333 488999998765432 3456788888888888 556788999999
Q ss_pred cCCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCCCCC-CccCCCccceeEEEEeC
Q psy6001 219 DLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNK-SARLNNKGWRLDYHLVS 297 (327)
Q Consensus 219 DFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~riD~il~s 297 (327)
|||+.+.+.+. ......++.|+|+.........++|+...+. .......+.||||||++
T Consensus 158 DfN~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~ 217 (256)
T 4gz1_A 158 DTNLRDQEVIK--------------------CGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFR 217 (256)
T ss_dssp ECCCCHHHHHH--------------------HTCSCTTEEEHHHHTTCCGGGSCSEETTTCCTTCCSSCCEECCEEEEEE
T ss_pred ccCCCcchhhh--------------------hhhccchhhhHHHHhcCCCCCCcccccCCCCccccCCCCCccEEEEEEE
Confidence 99986433221 1122336888888776655444666655441 11233456799999998
Q ss_pred cchhc-ccceeeec------cCCCCCCCcceEEEEeC
Q psy6001 298 EQLAN-NIKDCIIR------SDVQGSTHCPVVLRLSL 327 (327)
Q Consensus 298 ~~~~~-~~~~~~~~------~~~~~SDH~pV~~~~~l 327 (327)
+.... ....+.+. ....+|||+||+++|+|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 218 AEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp CC-CSEEEEEEEEECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred CCccceeeeEEEEEeccccCCCCCCCccccEEEEEEE
Confidence 75432 12223222 12346999999999985
No 16
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.96 E-value=1.2e-28 Score=210.96 Aligned_cols=228 Identities=19% Similarity=0.216 Sum_probs=137.1
Q ss_pred CceEEEEEEcCCchh---hhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccCCceeeEEEEEee
Q psy6001 70 TKVKVSTWNVNGLRA---CVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKE 146 (327)
Q Consensus 70 ~~l~i~s~Ni~~~~~---~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~~~~~Gvai~~k~ 146 (327)
++||||||||+++.. ..+...|+++|+.++|||||||||.... +. .+.. ..++..++.....+..|.+++.+.
T Consensus 2 ~~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~--~~-~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
T 4f1h_A 2 SKLSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIPAY--VQ-YLKK-RAVSYLFFEGSDDGYFTGIMLRKS 77 (250)
T ss_dssp CCEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHH--HH-HHHH-HCTTEEEEESCSSSSEEEEEEETT
T ss_pred CeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH--HH-HHHH-hccCceeecccccccCceeEEeec
Confidence 359999999998743 3344559999999999999999995321 22 2432 344444445444454555555444
Q ss_pred CcceeEe--CCCCCCCCc-CcEEEE--EeC--cEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCcEEEEcc
Q psy6001 147 KPLTVKY--GIPGVSNQR-GRVITA--KFK--RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGD 219 (327)
Q Consensus 147 ~~~~~~~--~~~~~~~~~-~~~i~~--~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~Ii~GD 219 (327)
+ +.... .+....... ..++.+ ... .+.++++|+++... ....|..|++.+.+.++ ......|+|||||
T Consensus 78 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~hl~~~~~---~~~~r~~q~~~~~~~l~-~~~~~~pvIl~GD 152 (250)
T 4f1h_A 78 R-VKFLESEIICFPTTQMMRNLLIAQVTFSGQKLYLMTSHLESCKN---QSQERTKQLRVVLQKIK-EAPEDAIVIFAGD 152 (250)
T ss_dssp T-CEEEEEEEEECTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGG---GHHHHHHHHHHHHHHHH-HSCTTEEEEEEEE
T ss_pred c-ccceecccccccCccccceEEEEEEecCCcEEEEeccccccccc---cHHHHHHHHHHHHHHHH-hcCCCCCEEEEEe
Confidence 3 33221 111111122 222222 233 47888888876433 23457788889998888 5566789999999
Q ss_pred CCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCCCCC-CccCCCccceeEEEEeCc
Q psy6001 220 LNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNK-SARLNNKGWRLDYHLVSE 298 (327)
Q Consensus 220 FN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~riD~il~s~ 298 (327)
||+.+.+.+... ....++.|+++..++.....++|+...+. .........||||||+++
T Consensus 153 fN~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~ 212 (250)
T 4f1h_A 153 TNLRDAEVANVG--------------------GLPAGVCDVWEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDRIFLRS 212 (250)
T ss_dssp CCCCHHHHHTTT--------------------SSCTTEEEHHHHTTCCGGGCCSEETTTCCSSCCSSCCEECCEEEEEEC
T ss_pred cCCCCcchhhhh--------------------hccccchHHHHHhcCCccCCcccccccCCCCCcCCCCCccEEEEEEeC
Confidence 998754433221 12225777777776665444666554441 112224566999999988
Q ss_pred chhcccc---eeeec------cCCCCCCCcceEEEEe
Q psy6001 299 QLANNIK---DCIIR------SDVQGSTHCPVVLRLS 326 (327)
Q Consensus 299 ~~~~~~~---~~~~~------~~~~~SDH~pV~~~~~ 326 (327)
....... ...+. ....+|||+||+++|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 213 AKTAPPVTPDHMALIGMEKLDCGRYTSDHWGIYCTFN 249 (250)
T ss_dssp CTTSCCCEEEEEEEECCSCCTTSSCSCSBCEEEEEEE
T ss_pred cccccceeeeEEEEecccccCCCCCCCcccCEEEEEe
Confidence 6543321 22222 1223699999999996
No 17
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.95 E-value=2e-27 Score=207.40 Aligned_cols=222 Identities=20% Similarity=0.294 Sum_probs=144.1
Q ss_pred ceEEEEEEcCCchh-------hhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccCC---ceeeE
Q psy6001 71 KVKVSTWNVNGLRA-------CVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK---GQGGV 140 (327)
Q Consensus 71 ~l~i~s~Ni~~~~~-------~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~~---~~~Gv 140 (327)
+|+||||||++... ..+...++++|+.++||||||||+.... +. .|.....+|..+...... ...|+
T Consensus 3 ~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~--~~-~l~~~l~~y~~~~~~~~~~~~~g~~~ 79 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQ--FQ-DLRAGLPEYDGIGVGRDDGKTAGEYA 79 (267)
T ss_dssp EEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHH--HH-HHHHHCTTEEEECCCTTTSSSSSCBC
T ss_pred cEEEEEEEeccCCCCccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHH--HH-HHHHhccCCcEEEecCCCCCcCCcee
Confidence 49999999988753 3444569999999999999999997321 22 244313688766543321 22459
Q ss_pred EEEEeeCcceeEeC----CCCCCC---------CcCcE-E--EEEe----CcEEEEEEeccCCCCcchhhHHHHHHHHHH
Q psy6001 141 GLLTKEKPLTVKYG----IPGVSN---------QRGRV-I--TAKF----KRFTFITVYVPNSGIKLKAIDFRMIWDQHF 200 (327)
Q Consensus 141 ai~~k~~~~~~~~~----~~~~~~---------~~~~~-i--~~~~----~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l 200 (327)
||+++.+.+.+... +....+ ...|. + .+.. ..+.++++|+++.. ...|..|++.+
T Consensus 80 ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~-----~~~R~~q~~~l 154 (267)
T 3g6s_A 80 PLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVG-----EEARRQSALLI 154 (267)
T ss_dssp CEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSC-----HHHHHHHHHHH
T ss_pred EEEEEccceEEEecccEecCCCCCccccccccccCcceEEEEEEEEcCCCCEEEEEEeCCCCCC-----HHHHHHHHHHH
Confidence 99988766654321 111000 11232 2 2332 25899999997643 34577888899
Q ss_pred HHHHHHHhcCCCcEEEEccCCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhcCC--ceeeEeccCCCCCCCccccCCC
Q psy6001 201 YDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTG--LVDAFRHLYPDEEGAYTYWSFR 278 (327)
Q Consensus 201 ~~~l~~~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~d~~~~~~~~~~~~~t~~~~~ 278 (327)
.+.+. .+....|+|||||||+.+.+ ..+..+...+ |.|+++.........+||....
T Consensus 155 ~~~l~-~~~~~~pvIl~GDfN~~~~~--------------------~~~~~l~~~~~~l~d~~~~~~~~~~~~~T~~~~~ 213 (267)
T 3g6s_A 155 IRKIK-EIVGERPAVVTGDFNVTDAS--------------------DAYETITTNEFVMKDAYKTAARVTGVDYTFHDFA 213 (267)
T ss_dssp HHHHH-HHTTTSCEEEEEECSSCTTS--------------------HHHHHHHSSSSCCEEHHHHCSEEEECSCSBCTTT
T ss_pred HHHHH-HhcCCCCEEEEeECCCCCCC--------------------HHHHHhhcCCcchhhhHhhhccccCCCCCEeCCC
Confidence 99988 55558999999999997432 2344455555 9999887653222237776554
Q ss_pred CCCccCCCccceeEEEEeCcchhcccceeeeccCC---CCCCCcceEEEEe
Q psy6001 279 NKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDV---QGSTHCPVVLRLS 326 (327)
Q Consensus 279 ~~~~~~~~~~~riD~il~s~~~~~~~~~~~~~~~~---~~SDH~pV~~~~~ 326 (327)
. .. .....||||||+++++. +..+.+.... .+|||+||++++.
T Consensus 214 ~-~~--~~~~~riD~I~~s~~~~--~~~~~v~~~~~~~~~SDH~PV~a~~~ 259 (267)
T 3g6s_A 214 R-IP--AEDCEKIDFIFVTPQVL--VKSCEIPAEVPEALLSDHNPQLADLE 259 (267)
T ss_dssp T-SC--GGGCCCCEEEEECTTSE--EEEEEECCCCSSSCCCSBCCEEEEEE
T ss_pred C-CC--CCCCCcEeEEEeCCCce--EEEEEEecCCCCCCCCCcccEEEEEE
Confidence 3 10 13456999999999764 3456665543 4799999999986
No 18
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.95 E-value=6e-27 Score=203.13 Aligned_cols=219 Identities=15% Similarity=0.178 Sum_probs=139.5
Q ss_pred eEEEEEEcCCchhh-------hhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccC--CceeeEEE
Q psy6001 72 VKVSTWNVNGLRAC-------VKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSD--KGQGGVGL 142 (327)
Q Consensus 72 l~i~s~Ni~~~~~~-------~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~--~~~~Gvai 142 (327)
||||||||++.... .+...++++|+.++||||||||+.... +. .|.. ..||..+..... .+..|+||
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~--~~-~l~~-~l~y~~~~~~~~~~~~~~g~ai 76 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQ--VR-DLKA-YTTFTCLSAEREGDGQGEGLAI 76 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHH--HH-HHHH-HSSSEEEEEESSSSSCSCEEEE
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHH--HH-HHHh-cCCCcEEEecccCCCCCceEEE
Confidence 68999999887543 344569999999999999999997322 22 2443 469976655433 24579999
Q ss_pred EEeeCcceeEeC----CCCC---CC-----CcCcEE---EEEe----CcEEEEEEeccCCCCcchhhHHHHHHHHHHHHH
Q psy6001 143 LTKEKPLTVKYG----IPGV---SN-----QRGRVI---TAKF----KRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDY 203 (327)
Q Consensus 143 ~~k~~~~~~~~~----~~~~---~~-----~~~~~i---~~~~----~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~ 203 (327)
++|...+.+... +... .. ...|.+ .+.. ..+.++++|+++.. ...|..|++.+.++
T Consensus 77 l~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~-----~~~r~~q~~~l~~~ 151 (257)
T 3l1w_A 77 LYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINVHLDHIS-----AHARLAGMTVILEE 151 (257)
T ss_dssp EECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEEEECCSSC-----HHHHHHHHHHHHHH
T ss_pred EEEcceEEEEecCeEECcCCCCcccccccccccceeEEEEEEEcCCCCEEEEEEeCCCCCC-----HHHHHHHHHHHHHH
Confidence 999665543221 1100 00 122332 2332 35999999997652 23577888888888
Q ss_pred HHHHhcCCCcEEEEccCCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhcCCceeeEeccCCCCCCCccccCCCCCCcc
Q psy6001 204 IQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSAR 283 (327)
Q Consensus 204 l~~~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~t~~~~~~~~~~ 283 (327)
+.+.+... |+|||||||+.+.. ..+. ++..++.|++....+... .+||..... . .
T Consensus 152 i~~~~~~~-pvil~GDfN~~~~~--------------------~~~~-~l~~~l~d~~~~~~~~~~-~~t~~~~~~-~-~ 206 (257)
T 3l1w_A 152 LHDKIAQY-PTLLMGDFNAESGE--------------------EVHQ-LVQKKFQDSKNLATHYGP-RGTFQNFTY-T-K 206 (257)
T ss_dssp THHHHHHS-CEEEEEECCCCTTS--------------------HHHH-HHTTTCEEGGGTSEEESC-SCCBCTTCT-T-C
T ss_pred HHHHcCCC-CEEEEeeCCCCCCc--------------------HHHH-HhhhhccchhhhhcccCC-CCcccCCcc-c-C
Confidence 87323334 99999999997422 1122 344489998887654322 367655432 1 1
Q ss_pred CCCccceeEEEEeCcchhcccceeeeccC----CCCCCCcceEEEEeC
Q psy6001 284 LNNKGWRLDYHLVSEQLANNIKDCIIRSD----VQGSTHCPVVLRLSL 327 (327)
Q Consensus 284 ~~~~~~riD~il~s~~~~~~~~~~~~~~~----~~~SDH~pV~~~~~l 327 (327)
....+.||||||+ +.+. +..+.+... ..+|||+||+++|++
T Consensus 207 ~~~~~~riD~i~~-~~~~--~~~~~v~~~~~~~~~~SDH~pv~~~l~~ 251 (257)
T 3l1w_A 207 PWAELEEIDYIYV-KGWQ--VQQTASLTDSIDGRFPSDHFPLEAEVAG 251 (257)
T ss_dssp CGGGCBCCEEEEE-ESEE--EEEEEECCCCBTTBCSSSBCCEEEEEEE
T ss_pred CCCCCCceeEEEE-CCcE--EEEEEEeccCcCCcccCCcceEEEEEEE
Confidence 1124479999999 6553 335555543 247999999999874
No 19
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.4e-25 Score=199.01 Aligned_cols=221 Identities=17% Similarity=0.246 Sum_probs=137.7
Q ss_pred ceEEEEEEcCCchh---------hhhhhhHHHHHHhcCCCEEEEeeeecCCCCcchhhhcccCCeEEEEEccCC---cee
Q psy6001 71 KVKVSTWNVNGLRA---------CVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDK---GQG 138 (327)
Q Consensus 71 ~l~i~s~Ni~~~~~---------~~~~~~i~~~i~~~~~DIl~LQEv~~~~~~~~~~l~~~~~gy~~~~~~~~~---~~~ 138 (327)
+|+||||||+.... ..+...++++|+.++|||||||||.... +. .|.....+|..+...... ...
T Consensus 6 ~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~--~~-~l~~~l~~y~~~~~~~~~g~~~g~ 82 (298)
T 3mpr_A 6 SLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQ--LK-DMKEALPGYDYIGVGRDDGKDKGE 82 (298)
T ss_dssp EEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHH--HH-HHHHHSTTEEEECCCTTTSSSSSC
T ss_pred cEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHHH--HH-HHHHhCCCCcEEEEecCCCCCCCc
Confidence 49999999976532 3344569999999999999999996321 22 243324577655443321 223
Q ss_pred eEEEEEeeCcceeEeC----CCCC---CC-----CcCcE-EEEEe------CcEEEEEEeccCCCCcchhhHHHHHHHHH
Q psy6001 139 GVGLLTKEKPLTVKYG----IPGV---SN-----QRGRV-ITAKF------KRFTFITVYVPNSGIKLKAIDFRMIWDQH 199 (327)
Q Consensus 139 Gvai~~k~~~~~~~~~----~~~~---~~-----~~~~~-i~~~~------~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 199 (327)
++||+++.+.+.+... +... .. ...|. +.+.+ ..+.++++|+.+.. ...|..|++.
T Consensus 83 ~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~~~~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~-----~~~R~~q~~~ 157 (298)
T 3mpr_A 83 HSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFKCKDTGFEFLFFNLHMDHIG-----KKARVESAFL 157 (298)
T ss_dssp BCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSC-----HHHHHHHHHH
T ss_pred eeEEEEecCceEEEeccEEEccCCCCccCcccccccCceeEEEEEEEcCCCCEEEEEEecCCCCC-----HHHHHHHHHH
Confidence 5999977765554221 1100 00 01232 22222 25899999997532 2457889999
Q ss_pred HHHHHHHHhc--CCCcEEEEccCCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhcCC-ceeeEeccCCCCCCCccccC
Q psy6001 200 FYDYIQSELR--SNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTG-LVDAFRHLYPDEEGAYTYWS 276 (327)
Q Consensus 200 l~~~l~~~~~--~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~d~~~~~~~~~~~~~t~~~ 276 (327)
+.+.+. .+. ...|+|||||||+.+.. ..+..+...| +.|++..........+||..
T Consensus 158 l~~~i~-~~~~~~~~pvIl~GDfN~~~~~--------------------~~~~~l~~~g~l~D~~~~~~~~~~~~~T~~~ 216 (298)
T 3mpr_A 158 VQEKMK-ELGRGKNLPAILTGDFNVDQTH--------------------QSYDAFVSKGVLCDSYEKCDYRYALNGTFNN 216 (298)
T ss_dssp HHHHHH-HTTTTSCCCEEEEEECSSCTTS--------------------HHHHHHHTTSSSEEHHHHCSEEECSSCSBCT
T ss_pred HHHHHH-HHhcCCCCcEEEEEeCCCCCCC--------------------HHHHHHhcCCcchhhHhhhcccCCCCCCccC
Confidence 999988 554 67899999999997422 2445555554 89988765532211256654
Q ss_pred CCCCCccCCCccceeEEEEeCcchhcccceeeeccC----------------------------CCCCCCcceEEEEe
Q psy6001 277 FRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSD----------------------------VQGSTHCPVVLRLS 326 (327)
Q Consensus 277 ~~~~~~~~~~~~~riD~il~s~~~~~~~~~~~~~~~----------------------------~~~SDH~pV~~~~~ 326 (327)
... . .....||||||+++++... .+.+... ...|||+||++++.
T Consensus 217 ~~~-~---~~~~~rID~Il~s~~~~v~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~v~~~ 288 (298)
T 3mpr_A 217 FDP-N---SFTESRIDHIFVSPSFHVK--RYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVELV 288 (298)
T ss_dssp TCT-T---CCCSCCCEEEEECTTSEEE--EEEECCCCEEEECC----------------CCEEEECSSSBCCEEEEEE
T ss_pred CCC-C---CCCCceEEEEEeCCCeeEE--EEEEecCccccCCCcccccCcccchhhhccChhhcccCCCCCcEEEEEe
Confidence 432 1 1256699999999876432 3333211 13599999999975
No 20
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.93 E-value=8.4e-26 Score=200.44 Aligned_cols=229 Identities=17% Similarity=0.152 Sum_probs=131.5
Q ss_pred ceEEEEEEcCCchh--------hhhhhhHHHHHHhcCCCEEEEeeeecCC--CCcchhhhcccCCeEEEEEc--------
Q psy6001 71 KVKVSTWNVNGLRA--------CVKKNACVEYILEENPDIMALQQIRCQE--DEVPESFRKSLSHYHMFWIG-------- 132 (327)
Q Consensus 71 ~l~i~s~Ni~~~~~--------~~~~~~i~~~i~~~~~DIl~LQEv~~~~--~~~~~~l~~~~~gy~~~~~~-------- 132 (327)
.||||||||+++.. ..+...+...|...+||||||||+.... ..+...|.. ..+|...+..
T Consensus 10 ~lrv~t~Ni~~~~~~~~~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~ 88 (301)
T 1zwx_A 10 NFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLRE-MYPHQTPVIGRSKHGWDK 88 (301)
T ss_dssp SCEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTT-TCCEECCCTTSCSTTCSE
T ss_pred ceEEEEEECccCCccccCCCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHHhh-cCCccccccCCccccccc
Confidence 39999999988621 2233346666788999999999997332 111111221 2333221111
Q ss_pred -------cCCceeeEEEEEeeCcceeEe-CCCC----CCCCcCcEEEEEe--C--cEEEEEEeccCCCCc---chhhHHH
Q psy6001 133 -------SDKGQGGVGLLTKEKPLTVKY-GIPG----VSNQRGRVITAKF--K--RFTFITVYVPNSGIK---LKAIDFR 193 (327)
Q Consensus 133 -------~~~~~~Gvai~~k~~~~~~~~-~~~~----~~~~~~~~i~~~~--~--~~~~~~~~~~~~~~~---~~~~~~r 193 (327)
...+.+|+||++|.++..... .++. +......++.+.+ . .+.++++|+++.... ......|
T Consensus 89 ~~g~~~~~~~~~~G~ailSr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R 168 (301)
T 1zwx_A 89 TEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIR 168 (301)
T ss_dssp EEC-----CCBCCCCEEEESSCEEEEEEEECSCCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHH
T ss_pred cccccccccccCCCEEEEecCCcccceEEEecCCCCcccccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHH
Confidence 012447999999998765432 1221 1111222444433 2 589999999876432 2345668
Q ss_pred HHHHHHHHHHHHHH-hcCCCcEEEEccCCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhcC-Cce--eeEeccCCCCC
Q psy6001 194 MIWDQHFYDYIQSE-LRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLV--DAFRHLYPDEE 269 (327)
Q Consensus 194 ~~~~~~l~~~l~~~-~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~--d~~~~~~~~~~ 269 (327)
..|++.|.+++++. ...+.|+|||||||+.+.. ..+..++.. ++. |+|+. .
T Consensus 169 ~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~--------------------~~~~~l~~~~~~~~~d~~~g-----~ 223 (301)
T 1zwx_A 169 AEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGT--------------------DEYHDMLKLLNVSSPANFNG-----Q 223 (301)
T ss_dssp HHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTS--------------------HHHHHHHHHHTBCCCTTCCT-----T
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCc--------------------HHHHHHHHHcCCCCCccccC-----C
Confidence 89999999999832 2456899999999997432 123333332 444 55541 1
Q ss_pred CCccccCCCCCC----ccCCCccceeEEEEeCcchhccc-----------ceeeec-----c-CCCCCCCcceEEEEeC
Q psy6001 270 GAYTYWSFRNKS----ARLNNKGWRLDYHLVSEQLANNI-----------KDCIIR-----S-DVQGSTHCPVVLRLSL 327 (327)
Q Consensus 270 ~~~t~~~~~~~~----~~~~~~~~riD~il~s~~~~~~~-----------~~~~~~-----~-~~~~SDH~pV~~~~~l 327 (327)
.+||....+ . .++.....||||||+++...... ..+.+. . ...+|||+||+++|.+
T Consensus 224 -~~T~~~~~n-~~~~~t~~~~~~~rID~I~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~a~l~~ 300 (301)
T 1zwx_A 224 -MATWDPTTN-SMLKESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVVGFTDN 300 (301)
T ss_dssp -SCSBCTTTC-HHHHHHCTTSCCBCCEEEEEBTTSCCCSCEEEEECCCCCCCEEEEETTEEEEECCSSSSCCEEEEEC-
T ss_pred -CceECCccC-ccccccCCCCCcceEeEEEEeCCCCCcccccceeeccccccceeecccCCccccCCCCCccEEEEEec
Confidence 267643211 0 01112457999999998643210 011111 1 1357999999999974
No 21
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.91 E-value=9.9e-24 Score=187.43 Aligned_cols=235 Identities=17% Similarity=0.135 Sum_probs=130.5
Q ss_pred ceEEEEEEcCCchh--------hhhhhhHHHHHHhcCCCEEEEeeeecCCC--CcchhhhcccC-------------CeE
Q psy6001 71 KVKVSTWNVNGLRA--------CVKKNACVEYILEENPDIMALQQIRCQED--EVPESFRKSLS-------------HYH 127 (327)
Q Consensus 71 ~l~i~s~Ni~~~~~--------~~~~~~i~~~i~~~~~DIl~LQEv~~~~~--~~~~~l~~~~~-------------gy~ 127 (327)
.||||||||+++.. ..+...+...+...+||||||||+..... .+...|.. .. ||+
T Consensus 9 ~lrv~t~Ni~~~~~~~~~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~ 87 (306)
T 2ddr_A 9 TLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKK-EYPNQTAVLGRSSGSEWD 87 (306)
T ss_dssp EEEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTT-TCCEECCCTTSCCSTTSS
T ss_pred EEEEEEEECccCcccccCCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHHhh-hCCceeeccCcccccccc
Confidence 49999999988642 22333355567888999999999964321 11111221 11 232
Q ss_pred EEEEcc---CCceeeEEEEEeeCcceeEe-CCCCC----CCCcCcEEEEEe--C--cEEEEEEeccCCCCc---chhhHH
Q psy6001 128 MFWIGS---DKGQGGVGLLTKEKPLTVKY-GIPGV----SNQRGRVITAKF--K--RFTFITVYVPNSGIK---LKAIDF 192 (327)
Q Consensus 128 ~~~~~~---~~~~~Gvai~~k~~~~~~~~-~~~~~----~~~~~~~i~~~~--~--~~~~~~~~~~~~~~~---~~~~~~ 192 (327)
..+... ..+..|+||++|.++..... .++.. ......++.+.+ + .+.++++|+++.... ......
T Consensus 88 ~~~~~~~~~~~~~~G~ailSr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~ 167 (306)
T 2ddr_A 88 KTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASV 167 (306)
T ss_dssp EEEESCCTTCSSCCCCEEEESSCEEEEEEEECSCCC----CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHH
T ss_pred cccccccccCccCCeEEEEECCCcccccEEEcCCCCCcchhcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHH
Confidence 222211 12457999999998665332 12110 011222333333 3 489999999876432 124456
Q ss_pred HHHHHHHHHHHHHHHh--cCCCcEEEEccCCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhcC-CceeeEeccCCCCC
Q psy6001 193 RMIWDQHFYDYIQSEL--RSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRHLYPDEE 269 (327)
Q Consensus 193 r~~~~~~l~~~l~~~~--~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~d~~~~~~~~~~ 269 (327)
|..|++.+.+++. .. ....|+|||||||+.+...|.. ... .+..++.. ++.+... .+ .
T Consensus 168 R~~q~~~l~~~i~-~~~~~~~~pvil~GDfN~~~~~~d~~----------~s~----~~~~l~~~~~~~~~~~--~g--~ 228 (306)
T 2ddr_A 168 RTNQLKEIQDFIK-NKNIPNNEYVLIGGDMNVNKINAENN----------NDS----EYASMFKTLNASVPSY--TG--H 228 (306)
T ss_dssp HHHHHHHHHHHHH-HHTCCTTSCEEEEEECCCCCTTTSSC----------TTS----HHHHHHHHHTBCCCEE--EE--C
T ss_pred HHHHHHHHHHHHH-HhcCCCCCEEEEEeeCCCCccccccc----------CCH----HHHHHHHhcCCCCccc--CC--C
Confidence 8899999999998 43 4568999999999985433210 011 22223322 4544211 11 1
Q ss_pred CCccccCCCCCC----ccCCCccceeEEEEeCcchhcccc-----------eeeec------cCCCCCCCcceEEEEeC
Q psy6001 270 GAYTYWSFRNKS----ARLNNKGWRLDYHLVSEQLANNIK-----------DCIIR------SDVQGSTHCPVVLRLSL 327 (327)
Q Consensus 270 ~~~t~~~~~~~~----~~~~~~~~riD~il~s~~~~~~~~-----------~~~~~------~~~~~SDH~pV~~~~~l 327 (327)
.+||....+ . ........||||||+++.+..... .+.+. ....+|||+||+++|.+
T Consensus 229 -~~T~~~~~n-~~~~~t~~~~~~~rID~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 229 -TATWDATTN-SIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATISM 305 (306)
T ss_dssp -SCSBCTTTC-HHHHHHCTTSCCBCCEEEEEBTTSCCCSEEEEEECCCCCCCEEEEETTEEEEECCSCSSCCEEEEEEC
T ss_pred -CcccCCCCC-ccccccCCCCCcceeeEEEEeCCCCCcccccceeeccccccceeccccccccccCCCCCcceeEEEEe
Confidence 377743211 0 011124579999999987542210 01111 01357999999999974
No 22
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.91 E-value=1e-23 Score=188.52 Aligned_cols=204 Identities=17% Similarity=0.194 Sum_probs=120.0
Q ss_pred ceEEEEEEcCCch--------hhhhhhhHHHHHHhcCCCEEEEeeeecCC--CCcchhhhcccCCeEEEEEccCC-----
Q psy6001 71 KVKVSTWNVNGLR--------ACVKKNACVEYILEENPDIMALQQIRCQE--DEVPESFRKSLSHYHMFWIGSDK----- 135 (327)
Q Consensus 71 ~l~i~s~Ni~~~~--------~~~~~~~i~~~i~~~~~DIl~LQEv~~~~--~~~~~~l~~~~~gy~~~~~~~~~----- 135 (327)
.|+||||||+++. +..+...+...+...+||||||||+.... ..+...|.. ...|...+.....
T Consensus 29 ~lrV~T~Ni~~~~~~~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L~~-~~py~~~~~g~~~~~~~~ 107 (317)
T 3i41_A 29 DLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKK-EYPYQTPVLGRSQSGWDK 107 (317)
T ss_dssp CCCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTT-TCCEECCCTTSCSTTCSE
T ss_pred ceEEEEEecccCccccCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHHHH-hCCcccccCCccccCccC
Confidence 4999999998863 33444446777778999999999996331 112222332 2334321111110
Q ss_pred ----------ceeeEEEEEeeCcceeEe-CCCCC--C--CCcCcEEEE--EeC--cEEEEEEeccCCCCc---chhhHHH
Q psy6001 136 ----------GQGGVGLLTKEKPLTVKY-GIPGV--S--NQRGRVITA--KFK--RFTFITVYVPNSGIK---LKAIDFR 193 (327)
Q Consensus 136 ----------~~~Gvai~~k~~~~~~~~-~~~~~--~--~~~~~~i~~--~~~--~~~~~~~~~~~~~~~---~~~~~~r 193 (327)
...|++|++|.++..... .++.. . .....++.+ ... .+.++++|+.+.... ......|
T Consensus 108 ~~~~y~~~~~~~~G~~ilSr~Pi~~~~~~~~~~~~~~d~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R 187 (317)
T 3i41_A 108 TEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIR 187 (317)
T ss_dssp EEESCCSSCSBCCCCEEEESSCEEEEEEEECSCCCSSGGGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHH
T ss_pred cccccccccccCCccEEEeCCCCccceeEECCCCCCcccccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHH
Confidence 115999999999776532 12111 1 111122333 333 489999999875432 2345678
Q ss_pred HHHHHHHHHHHHHH-hcCCCcEEEEccCCCCCCcccccCCCCCcccCCCCHHHHHHHHHHhcC-CceeeEeccCCCCCCC
Q psy6001 194 MIWDQHFYDYIQSE-LRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRHLYPDEEGA 271 (327)
Q Consensus 194 ~~~~~~l~~~l~~~-~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~d~~~~~~~~~~~~ 271 (327)
..|+..+.+++++. .....|+|||||||+.+.. ..+..+... ++.+.... .. .
T Consensus 188 ~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s--------------------~~~~~l~~~l~l~~~~~~-g~----~ 242 (317)
T 3i41_A 188 AEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGT--------------------PEFKDMLKNLNVNDVLYA-GH----N 242 (317)
T ss_dssp HHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTS--------------------HHHHHHHHHHTBCCCEEE-EC----S
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCC--------------------HHHHHHHHhcCCCCcccC-CC----C
Confidence 89999999999832 2468899999999997422 122233322 55554221 11 2
Q ss_pred ccccCCCCCC----ccCCCccceeEEEEeCcchh
Q psy6001 272 YTYWSFRNKS----ARLNNKGWRLDYHLVSEQLA 301 (327)
Q Consensus 272 ~t~~~~~~~~----~~~~~~~~riD~il~s~~~~ 301 (327)
+||.+..+ . ..+.....||||||++....
T Consensus 243 ~t~d~~~n-~~~~~~~p~~~~~rLDyIlvs~~~~ 275 (317)
T 3i41_A 243 STWDPQSN-SIAKYNYPNGKPEHLDYIFTDKDHK 275 (317)
T ss_dssp CSBCTTTC-HHHHHHCTTCCCBCCEEEEEBTTSC
T ss_pred cccCCCCC-ccccccCCCCCCcceEEEEEeCCcC
Confidence 67765433 1 11223446999999999763
No 23
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.89 E-value=1.7e-22 Score=184.25 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=101.3
Q ss_pred ceEEEEEEcCCc----------------hhhhhhhhHHHHHHhcCCCEEEEeeeecCC--CCcchhhhcccCCeEEEEEc
Q psy6001 71 KVKVSTWNVNGL----------------RACVKKNACVEYILEENPDIMALQQIRCQE--DEVPESFRKSLSHYHMFWIG 132 (327)
Q Consensus 71 ~l~i~s~Ni~~~----------------~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~--~~~~~~l~~~~~gy~~~~~~ 132 (327)
.|+||||||+.- .+..++..|+++|..++|||||||||.... +.+...|. ..||..++..
T Consensus 31 ~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~q~~~~l~~~L~--~~gY~~v~~~ 108 (398)
T 3ngq_A 31 SFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALK--ERGYDGFFSP 108 (398)
T ss_dssp EEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTHHHHHH--HTTEEEEEEE
T ss_pred CEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccHHHHHHHHHHHHH--hCCceEEEec
Confidence 499999999742 234445569999999999999999997542 23334566 6899888764
Q ss_pred cC----------CceeeEEEEEeeCcceeEeCCCCC---------------------CCCcCcEEEEEeC----------
Q psy6001 133 SD----------KGQGGVGLLTKEKPLTVKYGIPGV---------------------SNQRGRVITAKFK---------- 171 (327)
Q Consensus 133 ~~----------~~~~Gvai~~k~~~~~~~~~~~~~---------------------~~~~~~~i~~~~~---------- 171 (327)
.. .+..|+|||+|...+.+...-.+. .+..+.++.++..
T Consensus 109 k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~s~~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~ 188 (398)
T 3ngq_A 109 KSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKP 188 (398)
T ss_dssp SCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTCHHHHHTTTTCCCEEEEEEEEECGGGC------
T ss_pred CCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCcccccccchhhhcceeeccceeEEEEEEEccccccccccc
Confidence 21 246899999999988764321110 0111222333332
Q ss_pred -------cEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHh--------------cCCCcEEEEccCCCCCCc
Q psy6001 172 -------RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSEL--------------RSNSNIIISGDLNVCLQS 226 (327)
Q Consensus 172 -------~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~--------------~~~~~~Ii~GDFN~~~~~ 226 (327)
.+.++++|+-.... ....|+.|+..|.+.++ .+ ....|+|||||||+.|++
T Consensus 189 ~~~~~~~~l~V~nTHL~~~p~---~~~vRl~Q~~~Ll~~l~-~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~P~s 260 (398)
T 3ngq_A 189 IHAADKQLLIVANAHMHWDPE---YSDVKLIQTMMFVSEVK-NILEKASSRPGSPTADPNSIPLVLCADLNSLPDS 260 (398)
T ss_dssp -----CCEEEEEEEECCCCTT---CHHHHHHHHHHHHHHHH-HHHCC-------------CCCEEEEEECSCCTTS
T ss_pred ccCCCCcEEEEEEeCcCCCCC---CHHHHHHHHHHHHHHHH-HHHHHhhcccccccccCCCCceEEEeeCCCCCCC
Confidence 38888999866432 22457888888888887 43 145799999999999876
No 24
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.87 E-value=6.5e-21 Score=159.99 Aligned_cols=146 Identities=18% Similarity=0.253 Sum_probs=99.2
Q ss_pred eEEEEEEcCCchhhhhh---hhHHHHHHhcC-CCEEEEeeeecCC------------CCcc-hhhhcccCC------eEE
Q psy6001 72 VKVSTWNVNGLRACVKK---NACVEYILEEN-PDIMALQQIRCQE------------DEVP-ESFRKSLSH------YHM 128 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~---~~i~~~i~~~~-~DIl~LQEv~~~~------------~~~~-~~l~~~~~g------y~~ 128 (327)
++|||||+++-...... ..+.++|+..+ +|||+|||+.... .... .++.+ ..| +..
T Consensus 16 ~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~E~~w-~lGt~srp~~~y 94 (262)
T 2f1n_A 16 FRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIW-NLSTNSRPQQVY 94 (262)
T ss_dssp CCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEE-ECCSSSSSCEEE
T ss_pred eEEEEEEcCCCCCCCcccccccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCHHHHHH-HhCCCCCCceEE
Confidence 99999999886442211 12788999988 9999999997331 1111 13443 344 655
Q ss_pred EEEccC---CceeeEEEEEeeCcceeEeCCCCCCCCcCcEEEEEeCcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHH
Q psy6001 129 FWIGSD---KGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQ 205 (327)
Q Consensus 129 ~~~~~~---~~~~Gvai~~k~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~ 205 (327)
+|...- .+..|+||++|.+..+... ++......+.++-++++++.++++|+-..... + +.++++.+.+++.
T Consensus 95 iY~~~~D~~~~r~nlAIlSr~~adev~v-Lp~~~~~~Rp~lgiri~~~~ff~tHa~a~~g~-d----a~a~v~~I~~~~~ 168 (262)
T 2f1n_A 95 IYFSAVDALGGRVNLALVSNRRADEVFV-LSPVRQGGRPLLGIRIGNDAFFTAHAIAMRNN-D----APALVEEVYNFFR 168 (262)
T ss_dssp EEEECSCSSSCSSCEEEEESSCCSEEEE-ECCSSTTCCCEEEEEETTEEEEEEECCSSSSC-S----HHHHHHHHHHHHH
T ss_pred EEEeeccCCCCceeeEEEEcccccceEE-CCCCCCCCCceEEEEECCEEEEEEEecCCCCc-c----HHHHHHHHHHHHh
Confidence 444432 2667999999998775432 33222336788889999999999999776432 2 4567788888887
Q ss_pred HHhcCC-----CcEEEEccCCCCCCc
Q psy6001 206 SELRSN-----SNIIISGDLNVCLQS 226 (327)
Q Consensus 206 ~~~~~~-----~~~Ii~GDFN~~~~~ 226 (327)
. .+. .||||+||||..|++
T Consensus 169 -~-~~~~~~~~~pwii~GDFNr~P~s 192 (262)
T 2f1n_A 169 -D-SRDPVHQALNWMILGDFNREPAD 192 (262)
T ss_dssp -T-CSSHHHHTCEEEEEEECSSCHHH
T ss_pred -c-CcccccCCCcEEEEecCCCCCcc
Confidence 2 233 599999999998655
No 25
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.84 E-value=3.6e-22 Score=197.16 Aligned_cols=239 Identities=15% Similarity=0.115 Sum_probs=50.0
Q ss_pred ceEEEEEEcCC----------------chhhhhhhhHHHHHHhcCCCEEEEeeeecCC--CCcchhhhcccCCeEEEEEc
Q psy6001 71 KVKVSTWNVNG----------------LRACVKKNACVEYILEENPDIMALQQIRCQE--DEVPESFRKSLSHYHMFWIG 132 (327)
Q Consensus 71 ~l~i~s~Ni~~----------------~~~~~~~~~i~~~i~~~~~DIl~LQEv~~~~--~~~~~~l~~~~~gy~~~~~~ 132 (327)
.+++++||+.. ..+..+...|+++|+.++|||||||||.... ..+...+. ..||..++..
T Consensus 394 ~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~--~~gY~~~~~~ 471 (727)
T 4b8c_D 394 TFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLD--KHGYTGIFHA 471 (727)
T ss_dssp --------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC---------CEEC--
T ss_pred ceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHH--hCCccEEEec
Confidence 38899999974 1244555679999999999999999997421 22222355 6788776632
Q ss_pred c----------CCceeeEEEEEeeCcceeEeCCCCCC--------------CCcC------cEE---EEE----eCcEEE
Q psy6001 133 S----------DKGQGGVGLLTKEKPLTVKYGIPGVS--------------NQRG------RVI---TAK----FKRFTF 175 (327)
Q Consensus 133 ~----------~~~~~Gvai~~k~~~~~~~~~~~~~~--------------~~~~------~~i---~~~----~~~~~~ 175 (327)
. ..+..|+||++|.+.+.+.......+ +... ++. .+. ...+.+
T Consensus 472 ~~~~~~~~~~~~~~~~G~AI~y~~srf~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~l~~~~~g~~l~V 551 (727)
T 4b8c_D 472 KARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFSGAWMKHKKFQRTEDYLNRAMNKDNVALFLKLQHIPSGDTIWA 551 (727)
T ss_dssp --------------CCCCEEEC----------------------------------------------------------
T ss_pred cCCcccccccCCCCcccEEEEEEcccceEeeeeEEeechhhhhchhhcccHHHHhhcccCCcEEEEEEEeecCCCceEEE
Confidence 2 12467999998777665432111110 0000 111 111 124778
Q ss_pred EEEeccCCCCcchhhHHHHHHHHHHHHHHHHHh------------cCCCcEEEEccCCCCCCcccccCCCCCcccCCCCH
Q psy6001 176 ITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSEL------------RSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTV 243 (327)
Q Consensus 176 ~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~------------~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~ 243 (327)
+++|+...... ...|..++..+.+++. .+ ....|+|||||||+.|++.-+ .............
T Consensus 552 ~ntHL~~~p~~---~~~R~~Qa~~l~~~l~-~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s~~~-~~l~~~~v~~~~d 626 (727)
T 4b8c_D 552 VTTHLHWDPKF---NDVKTFQVGVLLDHLE-TLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVY-ELINTGRVQIHQE 626 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeccccCCCC---CchHHHHHHHHHHHHH-HHHHHhcccccccccCCCceEEecccCCCCCCcce-EeeecCCcCcchh
Confidence 88888654321 1236666667666666 32 246799999999998776321 1110000000000
Q ss_pred HHHHHHHHHhcC------CceeeEeccCCCCCCCccccCCCCCCccCCCccceeEEEEeCcchhcccceee---------
Q psy6001 244 EERRNFRELLDT------GLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI--------- 308 (327)
Q Consensus 244 ~~~~~~~~~~~~------~l~d~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~~~--------- 308 (327)
.+...+..+... .+.++|..... . .||.+.. ..+.+|||||++++.........
T Consensus 627 ~~~~~~~~~~~~~~~~~~~l~say~~~~~--~-~~T~~~~--------~~~~~LDyI~~S~~~l~~~~~~~~~~~~~~~~ 695 (727)
T 4b8c_D 627 GNGRDFGYMSEKNFSHNLALKSSYNCIGE--L-PFTNFTP--------SFTDVIDYIWFSTHALRVRGLLGEVDPEYVSK 695 (727)
T ss_dssp -------------------------------C-CCSBCCS--------SCCBCC-----------------CCCHHHHTT
T ss_pred hccccccccccccccccccccchhhcCCC--C-ccccccC--------ccCCeeeeEEEcCCceeEeeccCCCCHHHhcc
Confidence 000111111111 34455543221 1 2554432 24557999999986432211111
Q ss_pred ---eccCCCCCCCcceEEEEeC
Q psy6001 309 ---IRSDVQGSTHCPVVLRLSL 327 (327)
Q Consensus 309 ---~~~~~~~SDH~pV~~~~~l 327 (327)
......+|||.||+++|++
T Consensus 696 ~~~~P~~~~pSDH~pV~a~f~l 717 (727)
T 4b8c_D 696 FIGFPNDKFPSDHIPLLARFEF 717 (727)
T ss_dssp CSSSSBTTBCSSBCC-------
T ss_pred cCCCCCCCCCCCceeEEEEEEE
Confidence 1122346999999999975
No 26
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.83 E-value=3.4e-19 Score=151.42 Aligned_cols=146 Identities=15% Similarity=0.199 Sum_probs=90.2
Q ss_pred ceEEEEEEcCCchhh--hh-hhhHHHHHHh-cCCCEEEEeeeecCCCC-cc-hhh-----------hc-----ccCCeE-
Q psy6001 71 KVKVSTWNVNGLRAC--VK-KNACVEYILE-ENPDIMALQQIRCQEDE-VP-ESF-----------RK-----SLSHYH- 127 (327)
Q Consensus 71 ~l~i~s~Ni~~~~~~--~~-~~~i~~~i~~-~~~DIl~LQEv~~~~~~-~~-~~l-----------~~-----~~~gy~- 127 (327)
.++|+|||+.+-... .+ ..++.++|+. .++|||+|||+...... .. ..+ .+ ..+++.
T Consensus 4 ~~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~~r~~~~~g~~v~e~~w~lg~~~r~~~~y 83 (261)
T 1sr4_B 4 DFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNMVY 83 (261)
T ss_dssp GSCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEESSCSSSCCEEE
T ss_pred ccEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEEEEecCCCCCCccccchhhhcccCCchhhhhhhcccccCCCceE
Confidence 389999999874221 11 1148999999 88999999999753221 11 011 10 011333
Q ss_pred EEEEcc-CC-ceeeEEEEEeeCcceeEeCCCCCC--CCcCcEEEEEeCcEEEEEEeccCCCCcchhhHHHHHHHHHHHHH
Q psy6001 128 MFWIGS-DK-GQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDY 203 (327)
Q Consensus 128 ~~~~~~-~~-~~~Gvai~~k~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~ 203 (327)
.|+... .+ +..|+||++|.+..++. .++... .....++.+.++++.++++|+...... + +..++..+.++
T Consensus 84 iy~~~~d~~~g~~g~AIlSR~~~~~v~-~l~~~~~~~~~R~~l~i~i~g~~f~s~Hl~~~~~~-e----a~~~v~~I~~~ 157 (261)
T 1sr4_B 84 IYYSRLDVGANRVNLAIVSRRQADEAF-IVHSDSSVLQSRPAVGIRIGTDVFFTVHALATGGS-D----AVSLIRNIFTT 157 (261)
T ss_dssp EEEECCCTTTSCSCEEEEESSCCSEEE-EECCCCCSSCCCCEEEEEETTEEEEEEECCTTTTT-T----HHHHHHHHHHH
T ss_pred EEEEeecCCCCccceEEEEccchhceE-EcCCCCCCCcCcceEEEEECCeEEEEeCCCCCCCc-h----HHHHHHHHHHH
Confidence 333332 22 56799999998754432 222212 345666777888899999999877522 1 34556667776
Q ss_pred HHHHh--cCC---CcEEEEccCCCC
Q psy6001 204 IQSEL--RSN---SNIIISGDLNVC 223 (327)
Q Consensus 204 l~~~~--~~~---~~~Ii~GDFN~~ 223 (327)
+. .. .+. .++||+||||..
T Consensus 158 ~~-~~~~~~~~~~~~~ii~GDFN~~ 181 (261)
T 1sr4_B 158 FN-SSSSPPERRVYSWMVVGDFNRA 181 (261)
T ss_dssp HH-C---CGGGGGCEEEEEEECSSC
T ss_pred HH-hcccCCcccCCcEEEEeeCCCC
Confidence 65 21 034 799999999995
No 27
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.82 E-value=5e-20 Score=159.96 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=81.9
Q ss_pred eEEEEEEcCCchhhh-hhhhHHHHHHhc--CCCEEEEeeeecCCC----Ccchhhhcc-cCCeEEEEEccCC---ceeeE
Q psy6001 72 VKVSTWNVNGLRACV-KKNACVEYILEE--NPDIMALQQIRCQED----EVPESFRKS-LSHYHMFWIGSDK---GQGGV 140 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~-~~~~i~~~i~~~--~~DIl~LQEv~~~~~----~~~~~l~~~-~~gy~~~~~~~~~---~~~Gv 140 (327)
|||+||||+.++... +...+++.|... +|||||||||..... .+...|... ..+|..+.....+ ...++
T Consensus 1 lrv~s~NI~~~g~~~~~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~l~~~L~~~~~~~y~~v~~~~~~~~~~~~~~ 80 (260)
T 2a40_B 1 LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERY 80 (260)
T ss_dssp CEEEEEEEEEESHHHHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCCBCSSSCCBEE
T ss_pred CEEEEEehhhhCCCccchHHHHHHHHHHhccCCEEEEEEEEcCchhHHHHHHHHHHhccCCCcEEEEcccCCCCCCcEEE
Confidence 689999998764332 222245555553 899999999975321 111234310 1348666554322 23458
Q ss_pred EEEEeeCcceeEeC--CCCC--------CCCcCcEEEEEe-----CcEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHH
Q psy6001 141 GLLTKEKPLTVKYG--IPGV--------SNQRGRVITAKF-----KRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQ 205 (327)
Q Consensus 141 ai~~k~~~~~~~~~--~~~~--------~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~ 205 (327)
+++++...+.+... +... +.....+..... ..++++++|+++.... ....++..+.+.+.
T Consensus 81 ~~ly~~~~v~~~~~~~~~~~~~~~~~~~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~~-----~q~~~l~~~~~~~~ 155 (260)
T 2a40_B 81 LFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDAV-----AEINSLYDVYLDVQ 155 (260)
T ss_dssp EEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGGGHH-----HHHHHHHHHHHHHH
T ss_pred EEEEcCceeEecCceeccCCCcCCCCCceeeCCEEEEEEeCCCCCceEEEEEecCCCCCcH-----HHHHHHHHHHHHHH
Confidence 99999987765432 1110 111112223332 3589999999753221 11233333333333
Q ss_pred HHhcCCCcEEEEccCCCCCC
Q psy6001 206 SELRSNSNIIISGDLNVCLQ 225 (327)
Q Consensus 206 ~~~~~~~~~Ii~GDFN~~~~ 225 (327)
...+..|+|||||||+.+.
T Consensus 156 -~~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 156 -QKWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp -HHHCCCCEEEEEECCCSTT
T ss_pred -HhCCCCCEEEEecCCCCCc
Confidence 2245789999999999743
No 28
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.70 E-value=9.1e-18 Score=147.12 Aligned_cols=150 Identities=21% Similarity=0.218 Sum_probs=78.0
Q ss_pred ceEEEEEEcCCchhhhhhhhHHHHHHhcCCCE--EEEeeeecCCCC------cchhhhcc--cCCeEEEEEccCCceee-
Q psy6001 71 KVKVSTWNVNGLRACVKKNACVEYILEENPDI--MALQQIRCQEDE------VPESFRKS--LSHYHMFWIGSDKGQGG- 139 (327)
Q Consensus 71 ~l~i~s~Ni~~~~~~~~~~~i~~~i~~~~~DI--l~LQEv~~~~~~------~~~~l~~~--~~gy~~~~~~~~~~~~G- 139 (327)
+|+|+||||++.........++..+...+||| |||||+...... ....+... ..+|..+.... .+..|
T Consensus 8 ~i~V~T~Nv~~~~~~~~l~~wl~~~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L~~~~Y~~v~~~~-~~~~G~ 86 (282)
T 2imq_X 8 SVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNTI-TETMGL 86 (282)
T ss_dssp EEEEEEEEEETCCCCSCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTTEEEEEEEE-CSSEEE
T ss_pred EEEEEEEeCCCCcCchhHHHHhcccccCCCCEEEEEeeeeccccccchhhHHHHHHHHHhcCCCceEEEEecc-CceeEE
Confidence 39999999987643322222333334789996 599999743221 01112210 23675554322 22234
Q ss_pred -EEEEEeeCccee---E--eCCCCCCCC-cCcEEEEEeC--cEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHHHhcC
Q psy6001 140 -VGLLTKEKPLTV---K--YGIPGVSNQ-RGRVITAKFK--RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRS 210 (327)
Q Consensus 140 -vai~~k~~~~~~---~--~~~~~~~~~-~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~ 210 (327)
++|++|.+.+.. . .++...... .+..+.+.+. .+.++++|+.+.....+ .|..+++.+.+.+. .+..
T Consensus 87 ~l~vf~k~~~~~~i~~~~~~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~~~---~R~~~~~~I~~~~~-~~~~ 162 (282)
T 2imq_X 87 TVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTST---NTKYAYDTRLDYSK-KDDP 162 (282)
T ss_dssp EEEEEGGGCCTTTCCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCTT---SSSSSCCGGGCTTS-SSSC
T ss_pred EEEEEEccccCccceeeeeccccccccCCceEEEEEEECCEEEEEEEECCCCCCchHH---HHHHHHHHHHHhhh-ccCc
Confidence 555657664421 1 111111111 2233344443 48999999988643211 12333334443333 2246
Q ss_pred CCcEEEEccCCCCCC
Q psy6001 211 NSNIIISGDLNVCLQ 225 (327)
Q Consensus 211 ~~~~Ii~GDFN~~~~ 225 (327)
..++|++||||..++
T Consensus 163 ~~~vi~~GDfN~r~~ 177 (282)
T 2imq_X 163 SDFLFWIGDLNVRVE 177 (282)
T ss_dssp CSEEEEEEECSCCBC
T ss_pred cceEEEecccccccC
Confidence 678999999998744
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.62 E-value=1.9e-14 Score=128.79 Aligned_cols=146 Identities=21% Similarity=0.241 Sum_probs=85.1
Q ss_pred eEEEEEEcCCchhhhhhhhHHHHHHh---cCCCE--EEEeeeec-CCCC---------------cchhhhc---ccCCeE
Q psy6001 72 VKVSTWNVNGLRACVKKNACVEYILE---ENPDI--MALQQIRC-QEDE---------------VPESFRK---SLSHYH 127 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~~~i~~~i~~---~~~DI--l~LQEv~~-~~~~---------------~~~~l~~---~~~gy~ 127 (327)
+.|+||||++... ..+ |.++|.. ..||| |||||+.. .... +...|.. ...+|.
T Consensus 27 i~v~TwNv~g~~~--~~~-l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w~~~i~~~L~~~~~~~~~Y~ 103 (347)
T 1i9z_A 27 IFVASYNLNGCSA--TTK-LENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYV 103 (347)
T ss_dssp EEEEEEECTTCCC--CSC-CHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHHHHHTCCSSCCEE
T ss_pred EEEEeEecCCCCC--chh-HHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHHHHHHHHHHhhcccCCCcee
Confidence 8999999998775 223 7888874 68999 99999842 2211 1112321 014554
Q ss_pred EEEEccCCceeeEEEEEeeCcceeE---------eCCCCCC-CCcCcEEEEEeC--cEEEEEEeccCCCCcchhhHHHHH
Q psy6001 128 MFWIGSDKGQGGVGLLTKEKPLTVK---------YGIPGVS-NQRGRVITAKFK--RFTFITVYVPNSGIKLKAIDFRMI 195 (327)
Q Consensus 128 ~~~~~~~~~~~Gvai~~k~~~~~~~---------~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~ 195 (327)
.+....- +.-+++||+|.+..... .++.... ...+..+.+.+. .+.++++|+....... +.|..
T Consensus 104 ~v~s~~l-~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~~---~~R~~ 179 (347)
T 1i9z_A 104 QLRSGQL-VGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTNY---DERDH 179 (347)
T ss_dssp EEEEEEE-TTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSCH---HHHHH
T ss_pred EEEEeec-cceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCccH---HHHHH
Confidence 4433211 22468889998865422 1221111 222334445554 5899999998866542 34677
Q ss_pred HHHHHHHHHHH----HhcCCCcEEEEccCCCCC
Q psy6001 196 WDQHFYDYIQS----ELRSNSNIIISGDLNVCL 224 (327)
Q Consensus 196 ~~~~l~~~l~~----~~~~~~~~Ii~GDFN~~~ 224 (327)
+++.+.+.+.- .+....++|++||||...
T Consensus 180 d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyRi 212 (347)
T 1i9z_A 180 DYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRI 212 (347)
T ss_dssp HHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCB
T ss_pred HHHHHHHhhccCcccccccCccEEEeccccccc
Confidence 77766654420 113457899999999764
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.55 E-value=2.9e-14 Score=127.88 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=83.5
Q ss_pred eEEEEEEcCCchhhhhhhhHHHHHH----hcCCCE--EEEeeeecCCCCcchhhhc-ccCCeEEEEEccCCceeeEEEEE
Q psy6001 72 VKVSTWNVNGLRACVKKNACVEYIL----EENPDI--MALQQIRCQEDEVPESFRK-SLSHYHMFWIGSDKGQGGVGLLT 144 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~~~i~~~i~----~~~~DI--l~LQEv~~~~~~~~~~l~~-~~~gy~~~~~~~~~~~~Gvai~~ 144 (327)
+.|+||||++....... +.+++. ...||| |+|||+..........+.. ...+|..+....- +.-+++||+
T Consensus 28 i~v~TwNv~g~~~~~~~--L~~~l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~~~Y~~v~s~~l-~g~~l~Vfv 104 (357)
T 2xsw_A 28 LFVATWNMQGQKELPPS--LDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSSAAH-GVLYMSLFI 104 (357)
T ss_dssp EEEEEEECTTCSSCCSC--CHHHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEEEEEEE-TTEEEEEEE
T ss_pred EEEEEEecCCCCCCccc--HHHHhccccccCCCCEEEEEeeeccchHHHHHHHHHHHhCCcccchhhhhh-hhEEEEEEE
Confidence 88999999985432222 555553 357896 8899996432111112222 0245543332111 335688999
Q ss_pred eeCcceeEeCCCCC---------C-CCcCcEEEEEeC--cEEEEEEeccCCCCcchhhHHHHHHHHHHHHHHHH------
Q psy6001 145 KEKPLTVKYGIPGV---------S-NQRGRVITAKFK--RFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQS------ 206 (327)
Q Consensus 145 k~~~~~~~~~~~~~---------~-~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~l~~------ 206 (327)
|.+.......+... . ...+..+.+.+. .+.++++|+...... .+.|.+++..+.+.+.-
T Consensus 105 r~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~---~~~Rn~d~~~I~~~l~f~~~~~~ 181 (357)
T 2xsw_A 105 RRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK---VAERLLDYTRTVQALVLPRNVPD 181 (357)
T ss_dssp EGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC---HHHHHHHHHHHHHHCCCCSSSCC
T ss_pred chHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCch---HHHHHHHHHHHHHHhcccccccc
Confidence 98754321111100 1 112233344443 588999999887653 34577777776665420
Q ss_pred ----------HhcCCCcEEEEccCCCCCCc
Q psy6001 207 ----------ELRSNSNIIISGDLNVCLQS 226 (327)
Q Consensus 207 ----------~~~~~~~~Ii~GDFN~~~~~ 226 (327)
.......+|++||||...+.
T Consensus 182 ~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~ 211 (357)
T 2xsw_A 182 TNPYRSSAADVTTRFDEVFWFGDFNFRLSG 211 (357)
T ss_dssp SSGGGCBTTBGGGSSSEEEEEEECCCCBSS
T ss_pred cccccccccccccccceEEEecccCccccc
Confidence 00134789999999997653
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=99.34 E-value=2.7e-11 Score=105.90 Aligned_cols=146 Identities=16% Similarity=0.156 Sum_probs=82.0
Q ss_pred eEEEEEEcCCchhhhhhhhHHHHHHh--cCCC--EEEEeeeecCCCC----------cch-----hhhcccCCeEEEEEc
Q psy6001 72 VKVSTWNVNGLRACVKKNACVEYILE--ENPD--IMALQQIRCQEDE----------VPE-----SFRKSLSHYHMFWIG 132 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~~~i~~~i~~--~~~D--Il~LQEv~~~~~~----------~~~-----~l~~~~~gy~~~~~~ 132 (327)
+.|.||||+|.... .. +.++|.. ..|| ||+|||+...... .+. .|.. ..+|..+...
T Consensus 10 i~v~TwNvng~~~~--~~-l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W~~~i~~~L~~-~~~Y~~v~s~ 85 (313)
T 3mtc_A 10 FFAGTYNVNGQSPK--EC-LRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHP-DAKYAKVKLI 85 (313)
T ss_dssp EEEEEEECTTCCCC--SC-THHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHHHHHHSCT-TSCEEEEEEE
T ss_pred EEEEEEEcCCccCc--hh-HHHHhcccCCCCCeEEEEEEecccchhhhcccCcchHHHHHHHHHHhcCC-CCCEEEEEEe
Confidence 77899999998652 22 7778775 6799 7999999632110 001 1211 2346555332
Q ss_pred cCCceeeEEEEEeeCccee-------EeCCCCC---CCCcCcEEEEEeC--cEEEEEEeccCCCCcchhhHHHHHHHHHH
Q psy6001 133 SDKGQGGVGLLTKEKPLTV-------KYGIPGV---SNQRGRVITAKFK--RFTFITVYVPNSGIKLKAIDFRMIWDQHF 200 (327)
Q Consensus 133 ~~~~~~Gvai~~k~~~~~~-------~~~~~~~---~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~l 200 (327)
.-.| -.+.|+.|...... ..+.+.. -...+..+.+.+. .+.+++.|++..... .+.|.+.+..+
T Consensus 86 ~lvG-l~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~---~~~Rn~d~~~I 161 (313)
T 3mtc_A 86 RLVG-IMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE---YERRNQDYKDI 161 (313)
T ss_dssp EETT-EEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGG---HHHHHHHHHHH
T ss_pred chhh-hhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchH---HHHHHHHHHHH
Confidence 1112 12556777764321 1112211 2333444555554 588999999876543 45677766666
Q ss_pred HHHHHH----------HhcCCCcEEEEccCCCCCC
Q psy6001 201 YDYIQS----------ELRSNSNIIISGDLNVCLQ 225 (327)
Q Consensus 201 ~~~l~~----------~~~~~~~~Ii~GDFN~~~~ 225 (327)
.+.+.= .+.....+|++||||.+.+
T Consensus 162 ~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~ 196 (313)
T 3mtc_A 162 CSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIE 196 (313)
T ss_dssp HHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBC
T ss_pred HHhcccCCCCCccCCccccCCceEEEecccccccc
Confidence 554420 0012445999999999854
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=99.05 E-value=3.5e-09 Score=92.71 Aligned_cols=146 Identities=20% Similarity=0.218 Sum_probs=79.4
Q ss_pred eEEEEEEcCCchhhhhhhhHHHHHH-------------hcCCCEE--EEeeeecCCCC----cchhhhcc-cCCeEEEEE
Q psy6001 72 VKVSTWNVNGLRACVKKNACVEYIL-------------EENPDIM--ALQQIRCQEDE----VPESFRKS-LSHYHMFWI 131 (327)
Q Consensus 72 l~i~s~Ni~~~~~~~~~~~i~~~i~-------------~~~~DIl--~LQEv~~~~~~----~~~~l~~~-~~gy~~~~~ 131 (327)
+-|.||||+|..... + |..++. ...+||+ +|||+...... +...|... ...|..+..
T Consensus 10 i~vgTwNv~g~~p~~--~-L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s 86 (316)
T 4a9c_A 10 VFIGTWNMGSVPPPK--N-VTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAM 86 (316)
T ss_dssp EEEEEEECTTSCCCS--C-CHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred EEEEEeEcCCcCCCc--c-hhHhhcccccccCcccccccCCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEe
Confidence 778999999864332 2 566664 2357876 99998533211 11123210 135655544
Q ss_pred ccCCceeeEEEEEeeCccee---------EeCCCCC-CCCcCcEEEEEeC--cEEEEEEeccCCCCcchhhHHHHHHHHH
Q psy6001 132 GSDKGQGGVGLLTKEKPLTV---------KYGIPGV-SNQRGRVITAKFK--RFTFITVYVPNSGIKLKAIDFRMIWDQH 199 (327)
Q Consensus 132 ~~~~~~~Gvai~~k~~~~~~---------~~~~~~~-~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 199 (327)
..-.+ -.++||.|...... ..++... -...+..+.+.+. .+.+++.|++..... .++|.+.+..
T Consensus 87 ~~L~g-i~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~---~~~Rn~d~~~ 162 (316)
T 4a9c_A 87 QSLWN-IKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK---TARRNQNYLD 162 (316)
T ss_dssp EEETT-EEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTC---HHHHHHHHHH
T ss_pred eeehh-eeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchH---HHHHHHHHHH
Confidence 22112 46788888764431 1222211 2223344455554 588999999875543 4557776666
Q ss_pred HHHHHH---HHh------cCCCcEEEEccCCCCC
Q psy6001 200 FYDYIQ---SEL------RSNSNIIISGDLNVCL 224 (327)
Q Consensus 200 l~~~l~---~~~------~~~~~~Ii~GDFN~~~ 224 (327)
+.+.+. ..+ .....+|.+||||.+.
T Consensus 163 I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi 196 (316)
T 4a9c_A 163 ILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRL 196 (316)
T ss_dssp HHHHCCC-------CCTTTTSSEEEEEEECCCCB
T ss_pred HHHhCCCCCCCcCccccCCcCCeEEEcCCccCCc
Confidence 655431 000 1123589999999875
No 33
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.56 E-value=46 Score=25.35 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=12.5
Q ss_pred hHHHHHHhcCCCEEEEeee
Q psy6001 90 ACVEYILEENPDIMALQQI 108 (327)
Q Consensus 90 ~i~~~i~~~~~DIl~LQEv 108 (327)
.+++.+++.+||+|+|.=+
T Consensus 60 ~lv~aa~~~~~diV~lS~~ 78 (161)
T 2yxb_A 60 QVAMAAVQEDVDVIGVSIL 78 (161)
T ss_dssp HHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHhcCCCEEEEEee
Confidence 3667777777777776543
Done!