Your job contains 1 sequence.
>psy6001
MKRSADVIQKSDDENQIPKKQVKFDISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISH
EEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFR
KSLSHYHMFWIGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYV
PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG
YTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQL
ANNIKDCIIRSDVQGSTHCPVVLRLSL
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6001
(327 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|P27695 - symbol:APEX1 "DNA-(apurinic or apyrimi... 576 6.8e-56 1
UNIPROTKB|A1YFZ3 - symbol:APEX1 "DNA-(apurinic or apyrimi... 575 8.6e-56 1
UNIPROTKB|A2T6Y4 - symbol:APEX1 "DNA-(apurinic or apyrimi... 575 8.6e-56 1
UNIPROTKB|A2T7I6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 573 1.4e-55 1
MGI|MGI:88042 - symbol:Apex1 "apurinic/apyrimidinic endon... 573 1.4e-55 1
ZFIN|ZDB-GENE-040426-2761 - symbol:apex1 "APEX nuclease (... 573 1.4e-55 1
RGD|2126 - symbol:Apex1 "APEX nuclease (multifunctional D... 571 2.3e-55 1
UNIPROTKB|Q9Z2J2 - symbol:APE "Apurinic/apyrimidinic endo... 570 2.9e-55 1
UNIPROTKB|J9PA46 - symbol:APEX1 "Uncharacterized protein"... 567 6.1e-55 1
FB|FBgn0004584 - symbol:Rrp1 "Recombination repair protei... 566 7.8e-55 1
UNIPROTKB|P23196 - symbol:APEX1 "DNA-(apurinic or apyrimi... 564 1.3e-54 1
UNIPROTKB|A1YES6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 557 7.0e-54 1
TIGR_CMR|BA_3868 - symbol:BA_3868 "exodeoxyribonuclease I... 556 8.9e-54 1
UNIPROTKB|F1S8H5 - symbol:APEX1 "Uncharacterized protein"... 552 2.4e-53 1
TAIR|locus:2060540 - symbol:ARP "apurinic endonuclease-re... 526 1.3e-50 1
DICTYBASE|DDB_G0277701 - symbol:apeA "DNA-(apurinic or ap... 519 7.4e-50 1
WB|WBGene00001372 - symbol:exo-3 species:6239 "Caenorhabd... 470 1.2e-44 1
UNIPROTKB|G3V3M6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 442 1.1e-41 1
UNIPROTKB|G3V5Q1 - symbol:APEX1 "DNA-(apurinic or apyrimi... 209 1.4e-36 2
TIGR_CMR|CJE_0305 - symbol:CJE_0305 "exodeoxyribonuclease... 387 7.2e-36 1
UNIPROTKB|H7C4A8 - symbol:APEX1 "DNA-(apurinic or apyrimi... 205 7.7e-27 2
TIGR_CMR|NSE_0415 - symbol:NSE_0415 "exodeoxyribonuclease... 299 1.5e-26 1
TIGR_CMR|CBU_0297 - symbol:CBU_0297 "exodeoxyribonuclease... 296 3.2e-26 1
UNIPROTKB|F1M909 - symbol:F1M909 "Uncharacterized protein... 288 2.2e-25 1
UNIPROTKB|F1M910 - symbol:F1M910 "Uncharacterized protein... 288 2.2e-25 1
UNIPROTKB|P09030 - symbol:xthA "exonuclease III" species:... 286 3.6e-25 1
UNIPROTKB|G3V359 - symbol:APEX1 "DNA-(apurinic or apyrimi... 285 4.6e-25 1
UNIPROTKB|F1M911 - symbol:F1M911 "Uncharacterized protein... 279 2.0e-24 1
UNIPROTKB|G3V5M0 - symbol:APEX1 "DNA-(apurinic or apyrimi... 263 1.0e-22 1
UNIPROTKB|G3V3C7 - symbol:APEX1 "DNA-(apurinic or apyrimi... 261 1.6e-22 1
TIGR_CMR|APH_0505 - symbol:APH_0505 "exodeoxyribonuclease... 254 9.0e-22 1
UNIPROTKB|Q9KQY7 - symbol:VC1860 "Exodeoxyribonuclease II... 248 3.9e-21 1
TIGR_CMR|VC_1860 - symbol:VC_1860 "exodeoxyribonuclease I... 248 3.9e-21 1
UNIPROTKB|F1PFY2 - symbol:APEX1 "Uncharacterized protein"... 244 1.0e-20 1
TIGR_CMR|ECH_0675 - symbol:ECH_0675 "exodeoxyribonuclease... 188 3.6e-20 2
TIGR_CMR|SPO_2509 - symbol:SPO_2509 "exodeoxyribonuclease... 237 5.7e-20 1
TIGR_CMR|GSU_1539 - symbol:GSU_1539 "exodeoxyribonuclease... 236 7.2e-20 1
TIGR_CMR|SO_3037 - symbol:SO_3037 "exodeoxyribonuclease I... 230 3.1e-19 1
TAIR|locus:505006392 - symbol:AT3G48425 species:3702 "Ara... 215 5.6e-19 2
POMBASE|SPBC3D6.10 - symbol:apn2 "AP-endonuclease Apn2" s... 189 6.1e-19 2
TIGR_CMR|SPO_3425 - symbol:SPO_3425 "exodeoxyribonuclease... 202 4.6e-16 1
UNIPROTKB|F1MSK4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 141 1.5e-10 2
UNIPROTKB|Q5E9N9 - symbol:APEX2 "DNA-(apurinic or apyrimi... 141 1.5e-10 2
ZFIN|ZDB-GENE-040426-835 - symbol:apex2 "APEX nuclease (a... 125 3.0e-10 2
UNIPROTKB|Q2KFC8 - symbol:MGCH7_ch7g758 "Putative unchara... 123 7.4e-09 2
RGD|1586200 - symbol:Apex2l1 "APEX nuclease (apurinic/apy... 160 8.1e-09 1
GENEDB_PFALCIPARUM|PFC0250c - symbol:PFC0250c "AP endonuc... 147 1.0e-08 2
UNIPROTKB|O97240 - symbol:PFC0250c "AP endonuclease (DNA-... 147 1.0e-08 2
UNIPROTKB|G3V5D9 - symbol:APEX1 "DNA-(apurinic or apyrimi... 133 2.6e-08 1
MGI|MGI:1924872 - symbol:Apex2 "apurinic/apyrimidinic end... 155 2.9e-08 1
UNIPROTKB|E2RCW8 - symbol:APEX2 "Uncharacterized protein"... 153 4.9e-08 1
UNIPROTKB|J9NYZ7 - symbol:APEX2 "Uncharacterized protein"... 153 4.9e-08 1
UNIPROTKB|Q9UBZ4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 151 8.4e-08 1
UNIPROTKB|F1RUD3 - symbol:LOC100519003 "Uncharacterized p... 144 5.1e-07 1
UNIPROTKB|G3V574 - symbol:APEX1 "DNA-(apurinic or apyrimi... 116 1.9e-06 1
TAIR|locus:2135164 - symbol:AT4G36050 species:3702 "Arabi... 115 2.4e-06 2
SGD|S000000115 - symbol:APN2 "Class II abasic (AP) endonu... 100 1.1e-05 2
>UNIPROTKB|P27695 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0007568 "aging" evidence=IEA] [GO:0014912 "negative regulation
of smooth muscle cell migration" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0042493 "response to drug"
evidence=IEA] [GO:0045454 "cell redox homeostasis" evidence=IEA]
[GO:0045750 "positive regulation of S phase of mitotic cell cycle"
evidence=IEA] [GO:0051059 "NF-kappaB binding" evidence=IEA]
[GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA]
[GO:0071320 "cellular response to cAMP" evidence=IEA] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA;TAS] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA;TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0004528
"phosphodiesterase I activity" evidence=TAS] [GO:0005840 "ribosome"
evidence=TAS] [GO:0005783 "endoplasmic reticulum" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS] [GO:0003677
"DNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0043488 "regulation of mRNA
stability" evidence=IMP] [GO:0045739 "positive regulation of DNA
repair" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0031490 "chromatin DNA binding" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IDA;TAS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IDA] [GO:0080111 "DNA
demethylation" evidence=IDA] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=TAS] [GO:0004844 "uracil DNA N-glycosylase
activity" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0055114 "oxidation-reduction process" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] Reactome:REACT_216 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 EMBL:AF488551
EMBL:U79268 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0003714 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0016607
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0005840 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
BRENDA:4.2.99.18 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:X59764 EMBL:M80261 EMBL:D90373 EMBL:S43127
EMBL:M81955 EMBL:M92444 EMBL:X66133 EMBL:D13370 EMBL:BT007236
EMBL:AL355075 EMBL:BC002338 EMBL:BC004979 EMBL:BC008145
EMBL:BC019291 EMBL:M99703 IPI:IPI00215911 PIR:S23550
RefSeq:NP_001231178.1 RefSeq:NP_001632.2 RefSeq:NP_542379.1
RefSeq:NP_542380.1 UniGene:Hs.73722 PDB:1BIX PDB:1CQG PDB:1CQH
PDB:1DE8 PDB:1DE9 PDB:1DEW PDB:1E9N PDB:1HD7 PDB:2ISI PDB:2O3H
PDB:3U8U PDBsum:1BIX PDBsum:1CQG PDBsum:1CQH PDBsum:1DE8
PDBsum:1DE9 PDBsum:1DEW PDBsum:1E9N PDBsum:1HD7 PDBsum:2ISI
PDBsum:2O3H PDBsum:3U8U DisProt:DP00007 ProteinModelPortal:P27695
SMR:P27695 DIP:DIP-6130N IntAct:P27695 MINT:MINT-119189
STRING:P27695 PhosphoSite:P27695 DMDM:113984 PaxDb:P27695
PeptideAtlas:P27695 PRIDE:P27695 DNASU:328 Ensembl:ENST00000216714
Ensembl:ENST00000398030 Ensembl:ENST00000555414
Ensembl:ENST00000557344 GeneID:328 KEGG:hsa:328 UCSC:uc001vxg.3
GeneCards:GC14P020924 HGNC:HGNC:587 HPA:CAB004294 HPA:CAB047307
HPA:HPA002564 MIM:107748 neXtProt:NX_P27695 PharmGKB:PA201059
InParanoid:P27695 OMA:TAYAYTF PhylomeDB:P27695 BindingDB:P27695
ChEMBL:CHEMBL5619 ChiTaRS:APEX1 DrugBank:DB04967
EvolutionaryTrace:P27695 GenomeRNAi:328 NextBio:1347
PMAP-CutDB:P27695 ArrayExpress:P27695 Bgee:P27695 CleanEx:HS_APEX1
CleanEx:HS_HAP1 Genevestigator:P27695 GermOnline:ENSG00000100823
GO:GO:0004528 GO:GO:0004523 GO:GO:0004844 Uniprot:P27695
Length = 318
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 124/307 (40%), Positives = 181/307 (58%)
Query: 25 DISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRA 84
D R + + K+S +K+D E + D ++ S +K+ +WNV+GLRA
Sbjct: 15 DELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRA 74
Query: 85 CVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGL 142
+KK ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGL
Sbjct: 75 WIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGL 133
Query: 143 LTKEKPLTVKYGIPGVSN-QRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFY 201
L+++ PL V YGI + Q GRVI A+F F +T YVPN+G L +++R WD+ F
Sbjct: 134 LSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFR 193
Query: 202 DYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDA 260
+++ L S +++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+
Sbjct: 194 KFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADS 252
Query: 261 FRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCP 320
FRHLYP+ AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP
Sbjct: 253 FRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 311
Query: 321 VVLRLSL 327
+ L L+L
Sbjct: 312 ITLYLAL 318
>UNIPROTKB|A1YFZ3 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9597 "Pan paniscus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 EMBL:DQ977185
RefSeq:XP_003811777.1 RefSeq:XP_003811778.1 RefSeq:XP_003811779.1
ProteinModelPortal:A1YFZ3 SMR:A1YFZ3 GeneID:100987860
KEGG:pps:100987860 Uniprot:A1YFZ3
Length = 318
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 124/307 (40%), Positives = 181/307 (58%)
Query: 25 DISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRA 84
D R + + K+S +K+D E + D ++ S +K+ +WNV+GLRA
Sbjct: 15 DELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRA 74
Query: 85 CVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGL 142
+KK ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGL
Sbjct: 75 WIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGL 133
Query: 143 LTKEKPLTVKYGIPGVSN-QRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFY 201
L+++ PL V YGI + Q GRVI A+F F +T YVPN+G L +++R WD+ F
Sbjct: 134 LSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFR 193
Query: 202 DYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDA 260
+++ L S +++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+
Sbjct: 194 KFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADS 252
Query: 261 FRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCP 320
FRHLYP+ AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP
Sbjct: 253 FRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 311
Query: 321 VVLRLSL 327
+ L L+L
Sbjct: 312 ITLYLAL 318
>UNIPROTKB|A2T6Y4 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9598 "Pan troglodytes" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003684 GO:GO:0016607 GO:GO:0006281 GO:GO:0016491
GO:GO:0006351 GO:GO:0080111 GO:GO:0003723 GO:GO:0003713
GO:GO:0006310 GO:GO:0045454 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 KO:K10771
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 HOGENOM:HOG000034586
HOVERGEN:HBG050531 OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:DQ977332
RefSeq:NP_001074954.1 UniGene:Ptr.3373 ProteinModelPortal:A2T6Y4
SMR:A2T6Y4 STRING:A2T6Y4 Ensembl:ENSPTRT00000011181 GeneID:465200
KEGG:ptr:465200 InParanoid:A2T6Y4 NextBio:20843678 Uniprot:A2T6Y4
Length = 318
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 124/307 (40%), Positives = 181/307 (58%)
Query: 25 DISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRA 84
D R + + K+S +K+D E + D ++ S +K+ +WNV+GLRA
Sbjct: 15 DELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRA 74
Query: 85 CVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGL 142
+KK ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGL
Sbjct: 75 WIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGL 133
Query: 143 LTKEKPLTVKYGIPGVSN-QRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFY 201
L+++ PL V YGI + Q GRVI A+F F +T YVPN+G L +++R WD+ F
Sbjct: 134 LSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFR 193
Query: 202 DYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDA 260
+++ L S +++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+
Sbjct: 194 KFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADS 252
Query: 261 FRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCP 320
FRHLYP+ AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP
Sbjct: 253 FRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 311
Query: 321 VVLRLSL 327
+ L L+L
Sbjct: 312 ITLYLAL 318
>UNIPROTKB|A2T7I6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9600 "Pongo pygmaeus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 HOVERGEN:HBG050531
OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ977483 ProteinModelPortal:A2T7I6 SMR:A2T7I6
STRING:A2T7I6 InParanoid:A2T7I6 Uniprot:A2T7I6
Length = 318
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 123/307 (40%), Positives = 181/307 (58%)
Query: 25 DISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRA 84
D + + + K+S +K+D E + D ++ S +K+ +WNV+GLRA
Sbjct: 15 DELKTEPEAKKSKTTAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRA 74
Query: 85 CVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGL 142
+KK ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGL
Sbjct: 75 WIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGL 133
Query: 143 LTKEKPLTVKYGIPGVSN-QRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFY 201
L+++ PL V YGI + Q GRVI A+F F +T YVPN+G L +++R WD+ F
Sbjct: 134 LSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFR 193
Query: 202 DYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDA 260
+++ L S +++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+
Sbjct: 194 RFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADS 252
Query: 261 FRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCP 320
FRHLYP+ AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP
Sbjct: 253 FRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLTALCDSKIRSKALGSDHCP 311
Query: 321 VVLRLSL 327
+ L L+L
Sbjct: 312 ITLYLAL 318
>MGI|MGI:88042 [details] [associations]
symbol:Apex1 "apurinic/apyrimidinic endonuclease 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=ISO]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007568 "aging" evidence=ISO] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO] [GO:0014912 "negative
regulation of smooth muscle cell migration" evidence=ISO]
[GO:0016491 "oxidoreductase activity" evidence=ISO] [GO:0016607
"nuclear speck" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=ISO] [GO:0031490 "chromatin DNA binding"
evidence=ISO] [GO:0032403 "protein complex binding" evidence=ISO]
[GO:0043488 "regulation of mRNA stability" evidence=ISO]
[GO:0045454 "cell redox homeostasis" evidence=IDA] [GO:0045739
"positive regulation of DNA repair" evidence=ISO] [GO:0045750
"positive regulation of S phase of mitotic cell cycle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0051059 "NF-kappaB binding" evidence=ISO] [GO:0055114
"oxidation-reduction process" evidence=ISO] [GO:0070301 "cellular
response to hydrogen peroxide" evidence=ISO] [GO:0080111 "DNA
demethylation" evidence=ISO] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 MGI:MGI:88042 GO:GO:0005783
GO:GO:0005739 GO:GO:0005813 GO:GO:0048471 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:D90374 EMBL:U12273 EMBL:D38077 EMBL:BC052401 IPI:IPI00224152
PIR:A39500 RefSeq:NP_033817.1 UniGene:Mm.203
ProteinModelPortal:P28352 SMR:P28352 STRING:P28352
PhosphoSite:P28352 PaxDb:P28352 PRIDE:P28352
Ensembl:ENSMUST00000049411 GeneID:11792 KEGG:mmu:11792
InParanoid:P28352 NextBio:279621 Bgee:P28352 CleanEx:MM_APEX1
Genevestigator:P28352 GermOnline:ENSMUSG00000035960 Uniprot:P28352
Length = 317
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 121/304 (39%), Positives = 183/304 (60%)
Query: 28 RKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVK 87
+ + + K+S +K++ E + D ++ S + +K+ +WNV+GLRA +K
Sbjct: 17 KSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSPSGKSATLKICSWNVDGLRAWIK 76
Query: 88 KNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTK 145
K ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL++
Sbjct: 77 KKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEGYSGVGLLSR 135
Query: 146 EKPLTVKYGIPGVSN-QRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYI 204
+ PL V YGI + Q GRVI A+F+ F +T YVPN+G L +++R WD+ F ++
Sbjct: 136 QCPLKVSYGIGEEEHDQEGRVIVAEFESFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFL 195
Query: 205 QSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRH 263
+ +L S +++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+FRH
Sbjct: 196 K-DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRH 254
Query: 264 LYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVL 323
LYP+ AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP+ L
Sbjct: 255 LYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITL 313
Query: 324 RLSL 327
L+L
Sbjct: 314 YLAL 317
>ZFIN|ZDB-GENE-040426-2761 [details] [associations]
symbol:apex1 "APEX nuclease (multifunctional DNA
repair enzyme) 1" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0001947 "heart looping"
evidence=IMP] [GO:0060047 "heart contraction" evidence=IMP]
[GO:0010628 "positive regulation of gene expression" evidence=IMP]
[GO:0080111 "DNA demethylation" evidence=ISS] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 ZFIN:ZDB-GENE-040426-2761
GO:GO:0005783 GO:GO:0005739 GO:GO:0043066 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0006281
GO:GO:0080111 GO:GO:0003723 GO:GO:0060047 GO:GO:0090305
GO:GO:0001947 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
EMBL:EF041101 EMBL:EF041102 EMBL:EF041103 EMBL:EF041104
EMBL:BX323558 EMBL:BC055545 EMBL:BC097053 EMBL:BC164240
IPI:IPI00498781 RefSeq:NP_998586.1 UniGene:Dr.20170 PDB:2O3C
PDBsum:2O3C ProteinModelPortal:A0MTA1 SMR:A0MTA1 STRING:A0MTA1
PRIDE:A0MTA1 Ensembl:ENSDART00000067374 GeneID:406730
KEGG:dre:406730 InParanoid:Q7SXL6 EvolutionaryTrace:A0MTA1
NextBio:20818249 ArrayExpress:A0MTA1 Bgee:A0MTA1 Uniprot:A0MTA1
Length = 310
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 118/290 (40%), Positives = 174/290 (60%)
Query: 42 KSDDENQIPKKQVKFDISHEE-GSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENP 100
K + + + P+ + ++ E+ S+ +K+++WNV+GLRA VKKN ++++ +E+P
Sbjct: 24 KKEKKGKEPEAPILYEDPPEKLTSKDGRAANMKITSWNVDGLRAWVKKNG-LDWVRKEDP 82
Query: 101 DIMALQQIRCQEDEVPESFRKSLSHYHMFWIGS-DK-GQGGVGLLTKEKPLTVKYGIPGV 158
DI+ LQ+ +C E +P + H +W GS DK G GV +L K +PL V YGI
Sbjct: 83 DILCLQETKCAEKALPADITGMPEYPHKYWAGSEDKEGYSGVAMLCKTEPLNVTYGIGKE 142
Query: 159 SNQR-GRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIIS 217
+ + GRVITA+F F +T YVPN+ L +D+R WD F Y+ L + +++
Sbjct: 143 EHDKEGRVITAEFPDFFLVTAYVPNASRGLVRLDYRKTWDVDFRAYLCG-LDARKPLVLC 201
Query: 218 GDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSF 277
GDLNV Q IDL NP N K AG+T EER F +LL+ G D+FR LYPD+ AYT+W++
Sbjct: 202 GDLNVAHQEIDLKNPKGNRKNAGFTPEEREGFTQLLEAGFTDSFRELYPDQAYAYTFWTY 261
Query: 278 RNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+AR N GWRLDY ++S L + D IR+ GS HCP+ L L++
Sbjct: 262 M-MNARSKNVGWRLDYFVLSSALLPGLCDSKIRNTAMGSDHCPITLFLAV 310
>RGD|2126 [details] [associations]
symbol:Apex1 "APEX nuclease (multifunctional DNA repair enzyme) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=ISO;ISS] [GO:0003684 "damaged DNA binding" evidence=ISO;ISS]
[GO:0003713 "transcription coactivator activity" evidence=ISO;ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISO;ISS] [GO:0004519
"endonuclease activity" evidence=ISO] [GO:0004521 "endoribonuclease
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=ISO;IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=ISO;ISS] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007568 "aging" evidence=IDA] [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA;ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISO;ISS] [GO:0010243 "response to organic
nitrogen" evidence=IEP] [GO:0014912 "negative regulation of smooth
muscle cell migration" evidence=IMP] [GO:0016491 "oxidoreductase
activity" evidence=ISO;ISS] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISO;ISS] [GO:0031490
"chromatin DNA binding" evidence=ISO;ISS] [GO:0032403 "protein
complex binding" evidence=IPI] [GO:0042493 "response to drug"
evidence=IEP] [GO:0043488 "regulation of mRNA stability"
evidence=ISO;ISS] [GO:0045454 "cell redox homeostasis"
evidence=IEA;ISO] [GO:0045739 "positive regulation of DNA repair"
evidence=ISO;ISS] [GO:0045750 "positive regulation of S phase of
mitotic cell cycle" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=ISO;ISS] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO;ISS] [GO:0051059 "NF-kappaB binding" evidence=IDA]
[GO:0055114 "oxidation-reduction process" evidence=ISO] [GO:0070301
"cellular response to hydrogen peroxide" evidence=IEP;IDA]
[GO:0071320 "cellular response to cAMP" evidence=IEP] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEP]
[GO:0071417 "cellular response to organic nitrogen" evidence=IEP]
[GO:0080111 "DNA demethylation" evidence=ISO;ISS] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 RGD:2126 GO:GO:0005783
GO:GO:0005739 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0071320
GO:GO:0070301 GO:GO:0042493 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0007568 GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0005667 GO:GO:0003713 GO:GO:0006310 GO:GO:0014912
GO:GO:0004521 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0045739 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
GO:GO:0008408 GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:L27076 EMBL:AB023065 EMBL:D44495 EMBL:AF309114 EMBL:BC078816
IPI:IPI00231964 PIR:S42397 RefSeq:NP_077062.1 UniGene:Rn.5949
ProteinModelPortal:P43138 SMR:P43138 STRING:P43138 PhosphoSite:P43138
PRIDE:P43138 Ensembl:ENSRNOT00000013176 GeneID:79116 KEGG:rno:79116
UCSC:RGD:2126 InParanoid:P43138 NextBio:614526 ArrayExpress:P43138
Genevestigator:P43138 GermOnline:ENSRNOG00000009663 GO:GO:0051059
GO:GO:0071375 GO:GO:0045750 Uniprot:P43138
Length = 317
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 120/304 (39%), Positives = 183/304 (60%)
Query: 28 RKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVK 87
+ + + K+S +K++ E + D ++ S + +K+ +WNV+GLRA +K
Sbjct: 17 KSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSASGKSATLKICSWNVDGLRAWIK 76
Query: 88 KNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTK 145
K ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL++
Sbjct: 77 KKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEGYSGVGLLSR 135
Query: 146 EKPLTVKYGIPGVSN-QRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYI 204
+ PL V YGI + Q GRVI A+F+ F +T YVPN+G L +++R WD+ F ++
Sbjct: 136 QCPLKVSYGIGEEEHDQEGRVIVAEFESFILVTAYVPNAGRGLVRLEYRQRWDEAFRKFL 195
Query: 205 QSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRH 263
+ +L S +++ GDLNV + IDL NP N K AG+T +ER+ F E+L L D+FRH
Sbjct: 196 K-DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGEMLQAVPLADSFRH 254
Query: 264 LYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVL 323
LYP+ AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP+ L
Sbjct: 255 LYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITL 313
Query: 324 RLSL 327
L+L
Sbjct: 314 YLAL 317
>UNIPROTKB|Q9Z2J2 [details] [associations]
symbol:APE "Apurinic/apyrimidinic endonuclease"
species:10029 "Cricetulus griseus" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0016491
GO:GO:0003713 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOVERGEN:HBG050531 HSSP:P27695 EMBL:AF056934 EMBL:JH001089
RefSeq:NP_001231340.1 ProteinModelPortal:Q9Z2J2 SMR:Q9Z2J2
GeneID:100689281 Uniprot:Q9Z2J2
Length = 317
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 121/304 (39%), Positives = 181/304 (59%)
Query: 28 RKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVK 87
+ + + K+S +K++ E + D + S +K+ +WNV+GLRA +K
Sbjct: 17 KSEPETKKSKGAAKKNEKEAAGEGPFLYEDAPDNKTSPGGKLATLKICSWNVDGLRAWIK 76
Query: 88 KNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTK 145
K ++++ EE PDI+ LQ+ +C E+++P + H +W SDK G GVGLL++
Sbjct: 77 KKG-LDWVKEEAPDILCLQETKCSENKLPAELQDLPGLTHQYWSAPSDKEGYSGVGLLSR 135
Query: 146 EKPLTVKYGIPGVSN-QRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYI 204
+ PL V YGI + Q GRVI A+F F +T YVPN+G L +++R WD+ F ++
Sbjct: 136 QCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDKAFCKFL 195
Query: 205 QSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRH 263
+ +L S +++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+FRH
Sbjct: 196 K-DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTDSFRH 254
Query: 264 LYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVL 323
LYP+ AYT+W++ +AR N GWRLDY L+S L +++ D IRS GS HCP+ L
Sbjct: 255 LYPNTPYAYTFWTYM-MNARAKNVGWRLDYFLLSHSLLSSLCDSKIRSKALGSDHCPITL 313
Query: 324 RLSL 327
L+L
Sbjct: 314 YLAL 317
>UNIPROTKB|J9PA46 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 OMA:TAYAYTF EMBL:AAEX03009834
RefSeq:NP_001138591.1 ProteinModelPortal:J9PA46
Ensembl:ENSCAFT00000048382 GeneID:482558 KEGG:cfa:482558
Uniprot:J9PA46
Length = 318
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 121/298 (40%), Positives = 178/298 (59%)
Query: 34 KRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVE 93
K+S +KS+ E + D ++ + + +K+ +WNV+GLRA +KK ++
Sbjct: 24 KKSKTAAKKSEKEAAGEGPALYEDPPDQKTAPSGKSATLKICSWNVDGLRAWIKKKG-LD 82
Query: 94 YILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTKEKPLTV 151
++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL+++ PL V
Sbjct: 83 WVKEEAPDILCLQETKCSENKLPAELQELPGLPHQYWSAPSDKEGYSGVGLLSRQCPLKV 142
Query: 152 KYGIPGVSN-QRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRS 210
YGI + Q GRVI A+F F +T YVPN+G L +++R WD+ F +++ L S
Sbjct: 143 SYGIGEEEHDQEGRVIVAEFDTFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG-LAS 201
Query: 211 NSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRHLYPDEE 269
+++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+FRHLYP+
Sbjct: 202 RKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTA 261
Query: 270 GAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP+ L L+L
Sbjct: 262 YAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 318
>FB|FBgn0004584 [details] [associations]
symbol:Rrp1 "Recombination repair protein 1" species:7227
"Drosophila melanogaster" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=NAS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=NAS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 EMBL:AE014134
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006974
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008408 ChiTaRS:RRP1 EMBL:M62472
EMBL:AF073994 EMBL:AY118605 PIR:S28366 RefSeq:NP_476841.1
UniGene:Dm.280 ProteinModelPortal:P27864 SMR:P27864 STRING:P27864
PaxDb:P27864 PRIDE:P27864 EnsemblMetazoa:FBtr0077678 GeneID:33500
KEGG:dme:Dmel_CG3178 CTD:8568 FlyBase:FBgn0004584 InParanoid:P27864
OrthoDB:EOG4NK9B8 GenomeRNAi:33500 NextBio:783912 Bgee:P27864
GermOnline:CG3178 Uniprot:P27864
Length = 679
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 127/323 (39%), Positives = 187/323 (57%)
Query: 10 KSDDENQIPKKQVKFDISRKKKKMKRSA---DVIQKSDDEN--QIPKKQVKFDISHEEGS 64
K++D I + + +R +KK A DV ++S + + K + K ++ ++ +
Sbjct: 357 KAEDVEDIEEAAEESKPARGRKKAAAKAEEPDVDEESGSKTTKKAKKAETKTTVTLDKDA 416
Query: 65 RKPYTTK---VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRK 121
K +K+ +WNV GLRA +KK+ LEE PDI LQ+ +C D++PE +
Sbjct: 417 FALPADKEFNLKICSWNVAGLRAWLKKDGLQLIDLEE-PDIFCLQETKCANDQLPEEVTR 475
Query: 122 SLSHYHMFWIGSDKGQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVITAKFKRFTFITVYV 180
L YH +W+ G GV + +K P+ V+YGI + GR+ITA++++F I VYV
Sbjct: 476 -LPGYHPYWLCMPGGYAGVAIYSKIMPIHVEYGIGNEEFDDVGRMITAEYEKFYLINVYV 534
Query: 181 PNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAG 240
PNSG KL ++ RM W++ F Y++ +L + ++I GD+NV IDL NP N K AG
Sbjct: 535 PNSGRKLVNLEPRMRWEKLFQAYVK-KLDALKPVVICGDMNVSHMPIDLENPKNNTKNAG 593
Query: 241 YTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQL 300
+T EER ELL G VD FRHLYPD +GAYT+W++ +AR N GWRLDY LVSE+
Sbjct: 594 FTQEERDKMTELLGLGFVDTFRHLYPDRKGAYTFWTYM-ANARARNVGWRLDYCLVSERF 652
Query: 301 ANNIKDCIIRSDVQGSTHCPVVL 323
+ + IRS GS HCP+ +
Sbjct: 653 VPKVVEHEIRSQCLGSDHCPITI 675
>UNIPROTKB|P23196 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9913 "Bos taurus" [GO:0008081 "phosphoric diester hydrolase
activity" evidence=ISS] [GO:0045454 "cell redox homeostasis"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=ISS] [GO:0046872 "metal
ion binding" evidence=ISS] [GO:0016491 "oxidoreductase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0003713
"transcription coactivator activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0043488 "regulation of mRNA
stability" evidence=ISS] [GO:0080111 "DNA demethylation"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISS] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739
GO:GO:0005813 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0003684 GO:GO:0016607 GO:GO:0006281
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0003713 GO:GO:0006310 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:X56685
EMBL:BC122610 IPI:IPI00715890 PIR:S26830 RefSeq:NP_788782.2
UniGene:Bt.1302 PDB:1LYR PDB:1XZR PDB:1XZS PDB:1XZT PDBsum:1LYR
PDBsum:1XZR PDBsum:1XZS PDBsum:1XZT ProteinModelPortal:P23196
SMR:P23196 STRING:P23196 PRIDE:P23196 Ensembl:ENSBTAT00000003559
GeneID:281630 KEGG:bta:281630 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 InParanoid:P23196
OrthoDB:EOG44J2JD BRENDA:4.2.99.18 NextBio:20805567 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488
Uniprot:P23196
Length = 318
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 121/302 (40%), Positives = 182/302 (60%)
Query: 31 KKMKRSADVIQKSDDENQIPKKQVKF-DISHEEGSRKPYTTKVKVSTWNVNGLRACVKKN 89
KK K A K +++ + + V + D ++ S + +K+ +WNV+GLRA +KK
Sbjct: 24 KKSKAGA----KKNEKEAVGEGAVLYEDPPDQKTSPSGKSATLKICSWNVDGLRAWIKKK 79
Query: 90 ACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTKEK 147
++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL+++
Sbjct: 80 G-LDWVKEEAPDILCLQETKCSENKLPVELQELSGLSHQYWSAPSDKEGYSGVGLLSRQC 138
Query: 148 PLTVKYGIPGVSN-QRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQS 206
PL V YGI + Q GRVI A++ F +T YVPN+G L +++R WD+ F +++
Sbjct: 139 PLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG 198
Query: 207 ELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRHLY 265
L S +++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+FRHLY
Sbjct: 199 -LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTDSFRHLY 257
Query: 266 PDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRL 325
P+ AYT+W++ +AR N GWRLDY L+S+ + + D IRS GS HCP+ L L
Sbjct: 258 PNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSQSVLPALCDSKIRSKALGSDHCPITLYL 316
Query: 326 SL 327
+L
Sbjct: 317 AL 318
>UNIPROTKB|A1YES6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9595 "Gorilla gorilla gorilla" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
HOVERGEN:HBG050531 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ976454 ProteinModelPortal:A1YES6
Uniprot:A1YES6
Length = 318
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 119/307 (38%), Positives = 179/307 (58%)
Query: 25 DISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRA 84
D + + + K+S +K+D E + D ++ S +K+ +WNV+GLRA
Sbjct: 15 DELKTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRA 74
Query: 85 CVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG--SDKGQGGVGL 142
+KK ++++ EE PDI+ LQ+ +C E+++P ++ + +W +G GVGL
Sbjct: 75 WIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSYQYWSAPXXKEGYSGVGL 133
Query: 143 LTKEKPLTVKYGIPGVSN-QRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFY 201
L+++ PL V YGI + Q GRVI A+F F +T YVPN+G L +++R WD+ F
Sbjct: 134 LSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFR 193
Query: 202 DYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDA 260
+++ L S +++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+
Sbjct: 194 RFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADS 252
Query: 261 FRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCP 320
FRHLYP+ AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP
Sbjct: 253 FRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 311
Query: 321 VVLRLSL 327
+ L L+L
Sbjct: 312 ITLYLAL 318
>TIGR_CMR|BA_3868 [details] [associations]
symbol:BA_3868 "exodeoxyribonuclease III" species:198094
"Bacillus anthracis str. Ames" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142
GO:GO:0008853 HSSP:P27695 RefSeq:NP_846117.1 RefSeq:YP_020508.1
RefSeq:YP_029837.1 ProteinModelPortal:Q81WU8 DNASU:1087681
EnsemblBacteria:EBBACT00000011002 EnsemblBacteria:EBBACT00000017516
EnsemblBacteria:EBBACT00000022149 GeneID:1087681 GeneID:2815201
GeneID:2853014 KEGG:ban:BA_3868 KEGG:bar:GBAA_3868 KEGG:bat:BAS3584
OMA:ADVFCIQ ProtClustDB:CLSK917177
BioCyc:BANT260799:GJAJ-3643-MONOMER
BioCyc:BANT261594:GJ7F-3759-MONOMER Uniprot:Q81WU8
Length = 252
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 110/258 (42%), Positives = 162/258 (62%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFW- 130
+K +WNVNGLRA + K +EY+ E N DI LQ+I+ QE ++ ++ Y+ +W
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQEGQID----LNVEGYYTYWN 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIKLK 188
KG G + +K++PL+V YG+ G+ +Q GRVIT +F+ F IT+Y PNS L+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGL-GIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLE 115
Query: 189 AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRN 248
+++RM W+ F YI+ L +++ GDLNV + IDL NP N K G++ EER
Sbjct: 116 RLEYRMKWEDDFRAYIK-RLDEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREK 174
Query: 249 FRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCI 308
F +L+ G +D +R+LYPD+EGAY++WS+R AR N GWRLDY +VSE++ + I
Sbjct: 175 FTCILEEGFIDTYRYLYPDQEGAYSWWSYR-MGARAKNIGWRLDYFVVSERMKDQITAAK 233
Query: 309 IRSDVQGSTHCPVVLRLS 326
I S+V GS HCPV L ++
Sbjct: 234 INSEVMGSDHCPVELHIN 251
>UNIPROTKB|F1S8H5 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0080111 "DNA demethylation" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0045739 "positive regulation of DNA
repair" evidence=IEA] [GO:0045454 "cell redox homeostasis"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0031490 "chromatin DNA binding" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0046872 GO:GO:0003684
GO:GO:0016607 GO:GO:0006281 GO:GO:0016491 GO:GO:0080111
GO:GO:0003713 GO:GO:0090305 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:CT955972
Ensembl:ENSSSCT00000002390 Uniprot:F1S8H5
Length = 317
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 121/307 (39%), Positives = 182/307 (59%)
Query: 25 DISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRA 84
D + + + K+S +K++ E + D ++ S + +K+ +WNV+GLRA
Sbjct: 15 DEPKSEPEAKKSKAGAKKTEKEAAGDGAVLYEDPPDQKTSPSGKSATLKICSWNVDGLRA 74
Query: 85 CVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGL 142
+KK ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGL
Sbjct: 75 WIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWSAPSDKEGYSGVGL 133
Query: 143 LTKEKPLTVKYGIPGVSN-QRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFY 201
L+++ L V YGI + Q GRVI A+F F +T YVPN+G L +++R WD+ F
Sbjct: 134 LSRQC-LKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGRGLVRLEYRQRWDEAFR 192
Query: 202 DYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDA 260
+++ L S+ +++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+
Sbjct: 193 KFLKG-LASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADS 251
Query: 261 FRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCP 320
FRHLYP+ AYT+W++ +AR N GWRLDY L+S L + D IRS GS HCP
Sbjct: 252 FRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 310
Query: 321 VVLRLSL 327
+ L L+L
Sbjct: 311 ITLYLAL 317
>TAIR|locus:2060540 [details] [associations]
symbol:ARP "apurinic endonuclease-redox protein"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0042644
"chloroplast nucleoid" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0008284 "positive
regulation of cell proliferation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0016571 "histone methylation" evidence=RCA]
[GO:0016579 "protein deubiquitination" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;TAS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] [GO:0051276 "chromosome organization" evidence=RCA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] InterPro:IPR003034 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 Pfam:PF02037 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS50800 PROSITE:PS51435
SMART:SM00513 Pfam:PF03372 GO:GO:0005634 GO:GO:0045893
EMBL:CP002685 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
Gene3D:1.10.720.30 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AC004625 EMBL:X76912 IPI:IPI00529731
PIR:T02441 RefSeq:NP_181677.1 UniGene:At.25567
ProteinModelPortal:P45951 SMR:P45951 STRING:P45951 PaxDb:P45951
PRIDE:P45951 EnsemblPlants:AT2G41460.1 GeneID:818744
KEGG:ath:AT2G41460 TAIR:At2g41460 InParanoid:P45951 KO:K01142
OMA:IFNPAGN PhylomeDB:P45951 ProtClustDB:CLSN2683775
Genevestigator:P45951 GermOnline:AT2G41460 GO:GO:0042644
Uniprot:P45951
Length = 536
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 117/271 (43%), Positives = 165/271 (60%)
Query: 67 PYTTK-VKVSTWNVNGLRACVKKNA--CVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
P TK VKV TWNVNGLR +K + ++ EN DI+ LQ+ + Q +V E + +
Sbjct: 270 PEGTKCVKVMTWNVNGLRGLLKFESFSALQLAQRENFDILCLQETKLQVKDVEEIKKTLI 329
Query: 124 SHY-HMFWIGS-DK-GQGGVGLLTKEKPLTVKYGIPGVSNQ--RGRVITAKFKRFTFITV 178
Y H FW S K G G ++++ KPL+V+YG G+S GR++TA+F F I
Sbjct: 330 DGYDHSFWSCSVSKLGYSGTAIISRIKPLSVRYGT-GLSGHDTEGRIVTAEFDSFYLINT 388
Query: 179 YVPNSGIKLKAIDFRMI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVK 237
YVPNSG LK + +R+ WD+ ++I+ EL + ++++GDLN + ID+ NP N +
Sbjct: 389 YVPNSGDGLKRLSYRIEEWDRTLSNHIK-ELEKSKPVVLTGDLNCAHEEIDIFNPAGNKR 447
Query: 238 TAGYTVEERRNF-RELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLV 296
+AG+T+EER++F LLD G VD FR +P G YTYW +R+ R NKGWRLDY LV
Sbjct: 448 SAGFTIEERQSFGANLLDKGFVDTFRKQHPGVVG-YTYWGYRH-GGRKTNKGWRLDYFLV 505
Query: 297 SEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
S+ +A N+ D I D+ GS HCP+ L L L
Sbjct: 506 SQSIAANVHDSYILPDINGSDHCPIGLILKL 536
>DICTYBASE|DDB_G0277701 [details] [associations]
symbol:apeA "DNA-(apurinic or apyrimidinic site)
lyase" species:44689 "Dictyostelium discoideum" [GO:0016889
"endodeoxyribonuclease activity, producing 3'-phosphomonoesters"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016829 "lyase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
dictyBase:DDB_G0277701 Pfam:PF03372 GO:GO:0005634 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 GenomeReviews:CM000151_GR GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:U31631 EMBL:AAFI02000021
PIR:S68268 RefSeq:XP_642518.1 ProteinModelPortal:P51173
STRING:P51173 EnsemblProtists:DDB0185018 GeneID:8621167
KEGG:ddi:DDB_G0277701 eggNOG:COG0708 KO:K10771 OMA:GIRACLK
ProtClustDB:CLSZ2453462 GO:GO:0016889 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 Uniprot:P51173
Length = 361
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 111/310 (35%), Positives = 176/310 (56%)
Query: 18 PKKQVKFDISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEE-GSRKPYTTKVKVST 76
P K+ + KKK K + ++ ++E + K I+ + K ++K+ +
Sbjct: 50 PAKKAPAKKAAAKKKSKDEDEDEEEKEEEEETNKTTASVSIAIDNLDEPKVEENQMKIIS 109
Query: 77 WNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDKG 136
WNV G ++ + K EY+ +ENPD++ LQ+ + + + YH F KG
Sbjct: 110 WNVAGFKSVLSKGF-TEYVEKENPDVLCLQETKINPSNIKKDQMPKGYEYH-FIEADQKG 167
Query: 137 QGGVGLLTKEKPLTVKYGIPGVS--NQRGRVITAKFKRFTFITVYVPNSGIK-LKAIDFR 193
G G+LTK+KP + +GI G++ + GRVIT ++ +F + Y+PN+G + L+ +D+R
Sbjct: 168 HHGTGVLTKKKPNAITFGI-GIAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYR 226
Query: 194 MI-WDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFREL 252
+ WD F Y++ +L + II GDLNV IDL NP N K+AG+T+EER +F
Sbjct: 227 IKEWDVDFQAYLE-KLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSFSNF 285
Query: 253 LDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIK-DCIIRS 311
L+ G VD++RH P +EG+YT+WS+ R N GWRLDY +VS++L ++IK R+
Sbjct: 286 LEKGYVDSYRHFNPGKEGSYTFWSYLG-GGRSKNVGWRLDYFVVSKRLMDSIKISPFHRT 344
Query: 312 DVQGSTHCPV 321
V GS HCP+
Sbjct: 345 SVMGSDHCPI 354
>WB|WBGene00001372 [details] [associations]
symbol:exo-3 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=IMP;IDA]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0006284 GO:GO:0004527
GO:GO:0090305 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 OMA:GIRACLK PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008081 EMBL:Z81108
EMBL:AF034258 PIR:T24066 RefSeq:NP_001021584.1 UniGene:Cel.19620
HSSP:P27695 ProteinModelPortal:G5EBR7 SMR:G5EBR7 IntAct:G5EBR7
PRIDE:G5EBR7 EnsemblMetazoa:R09B3.1a.1 EnsemblMetazoa:R09B3.1a.2
GeneID:173069 KEGG:cel:CELE_R09B3.1 CTD:173069 WormBase:R09B3.1a
NextBio:878149 Uniprot:G5EBR7
Length = 288
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 112/280 (40%), Positives = 168/280 (60%)
Query: 52 KQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQ 111
K+VK + E+ ++K + K WNV GLRACVKK+ E +L E PD++ L + +C+
Sbjct: 20 KKVK--PAEEDNNQKSW----KFVCWNVAGLRACVKKSDFKE-VLAEEPDLVFLGETKCK 72
Query: 112 E--DEVPESFRKSLSHYHMFWIGSDK--GQGGVGLLTKEKPLTVKYGIPGVS-NQRGRVI 166
E E+ E+F+ ++ + ++K G GVGLL+K P+ V GI + GR+I
Sbjct: 73 EWPPEMEETFK---NYTKTLVVSTEKNGGYAGVGLLSKCAPMKVHKGIGDPEFDTAGRLI 129
Query: 167 TAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQS 226
A+F +F FI YVPNSG KL ++ R W++ + ++ E+ +I GDLNV
Sbjct: 130 IAEFSKFYFIGAYVPNSGAKLVNLEKRGRWEKLLTEKMK-EMDEKKPVIYGGDLNVAHNE 188
Query: 227 IDLANPDKNV-KTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLN 285
IDL NP+ N KTAG+T +ER F E+L+ G D FR ++PDE+ Y++WS+ S R
Sbjct: 189 IDLKNPESNRNKTAGFTDQERGWFSEMLELGFTDTFRAMHPDEK-KYSFWSYLANS-RQK 246
Query: 286 NKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRL 325
+ GWRLDY++VS ++ N +K I S V GS H PVV+++
Sbjct: 247 DVGWRLDYYVVSNRIMNKVKRSDIMSSVMGSDHAPVVMQI 286
>UNIPROTKB|G3V3M6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0005813 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0045454 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V3M6 SMR:G3V3M6 Ensembl:ENST00000553681
ArrayExpress:G3V3M6 Bgee:G3V3M6 Uniprot:G3V3M6
Length = 263
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 96/247 (38%), Positives = 145/247 (58%)
Query: 25 DISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRA 84
D R + + K+S +K+D E + D ++ S +K+ +WNV+GLRA
Sbjct: 15 DELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRA 74
Query: 85 CVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGL 142
+KK ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGL
Sbjct: 75 WIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGL 133
Query: 143 LTKEKPLTVKYGIPGVSN-QRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFY 201
L+++ PL V YGI + Q GRVI A+F F +T YVPN+G L +++R WD+ F
Sbjct: 134 LSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFR 193
Query: 202 DYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDA 260
+++ L S +++ GDLNV + IDL NP N K AG+T +ER+ F ELL L D+
Sbjct: 194 KFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADS 252
Query: 261 FRHLYPD 267
FRHLYP+
Sbjct: 253 FRHLYPN 259
>UNIPROTKB|G3V5Q1 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634
GO:GO:0005813 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V5Q1 SMR:G3V5Q1 Ensembl:ENST00000555839
ArrayExpress:G3V5Q1 Bgee:G3V5Q1 Uniprot:G3V5Q1
Length = 242
Score = 209 (78.6 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 41/95 (43%), Positives = 60/95 (63%)
Query: 184 GIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTV 243
G L +++R WD+ F +++ L S +++ GDLNV + IDL NP N K AG+T
Sbjct: 147 GRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTP 205
Query: 244 EERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSF 277
+ER+ F ELL L D+FRHLYP+ AYT+W++
Sbjct: 206 QERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTY 240
Score = 203 (76.5 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 46/133 (34%), Positives = 75/133 (56%)
Query: 25 DISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRA 84
D R + + K+S +K+D E + D ++ S +K+ +WNV+GLRA
Sbjct: 15 DELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRA 74
Query: 85 CVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGL 142
+KK ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGL
Sbjct: 75 WIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGL 133
Query: 143 LTKEKPLTVKYGI 155
L+++ PL V YGI
Sbjct: 134 LSRQCPLKVSYGI 146
>TIGR_CMR|CJE_0305 [details] [associations]
symbol:CJE_0305 "exodeoxyribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
RefSeq:YP_178325.1 ProteinModelPortal:Q5HWL0 STRING:Q5HWL0
GeneID:3231067 KEGG:cjr:CJE0305 PATRIC:20042312 OMA:IMKLLSW
ProtClustDB:CLSK878706 BioCyc:CJEJ195099:GJC0-310-MONOMER
Uniprot:Q5HWL0
Length = 259
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 85/257 (33%), Positives = 137/257 (53%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ +WNVNGLRA KNA +++I +E D + Q+I+ ED+ P+ + HM++
Sbjct: 8 MKLLSWNVNGLRAICDKNA-LDWIAQEQIDFIGFQEIKAHEDKFPKKIYE-YPFKHMYFN 65
Query: 132 GSDK-GQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAI 190
+ + G GV L K ++ GRV+ +FK +Y PN + +
Sbjct: 66 SAKRAGYSGVMSLCNFNSEVKKCEF--FDDEEGRVLEHRFKNIALFNIYFPNGQKDEERL 123
Query: 191 DFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFR 250
+F+M + F Y+ L+ III GD+N + IDL +P N T+G+ ER
Sbjct: 124 NFKMQFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWID 183
Query: 251 ELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIR 310
+LL G +D FR + + + Y++WS+R K AR N GWR+DY +S+ L + +K+ IR
Sbjct: 184 DLLKLGFIDTFREINGEIKEKYSWWSYRMK-ARERNVGWRIDYFFISKGLKDKLKNAFIR 242
Query: 311 SDVQGSTHCPVVLRLSL 327
D+ GS H PV + + +
Sbjct: 243 DDIFGSDHAPVGIEIDI 259
>UNIPROTKB|H7C4A8 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:H7C4A8 PRIDE:H7C4A8
Ensembl:ENST00000438886 Uniprot:H7C4A8
Length = 150
Score = 205 (77.2 bits), Expect = 7.7e-27, Sum P(2) = 7.7e-27
Identities = 46/105 (43%), Positives = 67/105 (63%)
Query: 64 SRKPYTTKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSL 123
S KP T +K+ +WNV+GLRA +KK ++++ EE PDI+ LQ+ +C E+++P ++
Sbjct: 6 SGKPAT--LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELP 62
Query: 124 SHYHMFWIG-SDK-GQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRV 165
H +W SDK G GVGLL+++ PL V YGI V N RG V
Sbjct: 63 GLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIAYVPNAGRGLV 107
Score = 115 (45.5 bits), Expect = 7.7e-27, Sum P(2) = 7.7e-27
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 179 YVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANP 232
YVPN+G L +++R WD+ F +++ L S +++ GDLNV + IDL NP
Sbjct: 98 YVPNAGRGLVRLEYRQRWDEAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNP 150
>TIGR_CMR|NSE_0415 [details] [associations]
symbol:NSE_0415 "exodeoxyribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020848 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
KO:K01142 EMBL:CP000237 GenomeReviews:CP000237_GR
HOGENOM:HOG000034587 GO:GO:0008853 RefSeq:YP_506301.1
ProteinModelPortal:Q2GDZ5 STRING:Q2GDZ5 GeneID:3931772
KEGG:nse:NSE_0415 PATRIC:22680889 OMA:EKAFSWW
ProtClustDB:CLSK2528138 BioCyc:NSEN222891:GHFU-437-MONOMER
Uniprot:Q2GDZ5
Length = 265
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 79/264 (29%), Positives = 140/264 (53%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+KV+TWNVN +R + A ++ EN D++ LQ+++CQE + P LS Y++ +
Sbjct: 7 LKVATWNVNSIRQ--RAEAVSALLVSENLDVLLLQELKCQESDFPLHVFNDLS-YNVI-L 62
Query: 132 GSDKGQGGVGLLTKEKPLTV---KYGIPGVSNQRGRVITAKFKRFTFITVYVPNS-GIKL 187
KG GV + ++ P+T + + G + VI+ K I++Y+PN+
Sbjct: 63 KCQKGYNGVAIASRW-PITKISDEIYMDGEARYIEGVISFFDKCIRLISIYIPNAQAAGS 121
Query: 188 KAIDFRMIWDQHFYDYIQSELRSNSNI-IISGDLNVCLQSIDLANPDKNVKTAGYTVEER 246
+++M + I L +N++I ++ GD+N + ID+ +P K G+ +EER
Sbjct: 122 PRFEYKMQFHDALARRIHGYLLNNNDIMLLGGDMNAAPEDIDVYDPVKLDGCTGFHIEER 181
Query: 247 RNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
RELL+ GL D FR YP ++ +++W +R + N+G R+D+ L S + +++ D
Sbjct: 182 SKLRELLNLGLFDTFRMKYPTKQ-EFSWWDYRGGGLQ-RNEGMRIDHILASAEGMDHLLD 239
Query: 307 CIIRSDVQG----STHCPVVLRLS 326
C I +++ S H PVV L+
Sbjct: 240 CYILKELRHISRPSDHVPVVCVLN 263
>TIGR_CMR|CBU_0297 [details] [associations]
symbol:CBU_0297 "exodeoxyribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
HSSP:P27695 OMA:ADVFCIQ RefSeq:NP_819340.1
ProteinModelPortal:Q83EM1 PRIDE:Q83EM1 GeneID:1208179
KEGG:cbu:CBU_0297 PATRIC:17929289 ProtClustDB:CLSK913965
BioCyc:CBUR227377:GJ7S-304-MONOMER Uniprot:Q83EM1
Length = 259
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 79/261 (30%), Positives = 139/261 (53%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIR-CQEDEVPESFRKSLSHYHMFW 130
+++ T N+NG+RA ++ +++ + DI+ LQ+ + C E + F YH ++
Sbjct: 1 MRIITLNLNGIRAAARRGF-FDWLKRQKADIVCLQETKACLEITNGDQFHPK--GYHCYY 57
Query: 131 IGSDK-GQGGVGLLTKEKP--LTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPN--SGI 185
++K G GVG+ +EKP +T + G +++ GR I A F + ++Y+P+ +G
Sbjct: 58 HDAEKSGYSGVGIYCREKPDRVTTRLGWEH-ADKEGRYIQADFGSLSVASLYMPSGTTGE 116
Query: 186 KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEE 245
+ I F + + +++ + S + II GD N+ + ID+ N N K +G EE
Sbjct: 117 HRQKIKFDFM--DRYMKRLKNIVHSKRSFIICGDWNIVHKEIDIKNFKSNQKYSGCLPEE 174
Query: 246 RRNFRELLD-TGLVDAFR--HLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLAN 302
R E+ GLVDAFR + PD+ YT+WS R ++ N GWR+DY +++ L N
Sbjct: 175 RAWLDEVFTKVGLVDAFRVVNQKPDQ---YTWWSSRGRAWE-KNVGWRIDYQVITSDLKN 230
Query: 303 NIKDCIIRSDVQGSTHCPVVL 323
++K I D + S H P+++
Sbjct: 231 SVKSERIYKDKRFSDHAPLII 251
>UNIPROTKB|F1M909 [details] [associations]
symbol:F1M909 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00779020 Ensembl:ENSRNOT00000055393 Uniprot:F1M909
Length = 292
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 86/296 (29%), Positives = 141/296 (47%)
Query: 42 KSDDENQIPKKQVKFDISHEEGSRKPYTTK-----VKVSTWNVNGLRACVKKNACVEYIL 96
KS+ E + K K + HE G T++ ++S+W V GL AC++K ++ +
Sbjct: 19 KSEPETKKSKGAAKKTVLHE-GPPDQKTSQWPIRHTQISSWEVGGLPACIQKKG-LDCVK 76
Query: 97 EENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SD-KGQGGVGLLTKE---KPLTV 151
EE PDI+ LQ+ +C ++++ ++ +W SD + GVGLL+ K L
Sbjct: 77 EETPDILCLQETKCSKNKLLAELQELPGLTRQYWSAPSDTEAYSGVGLLSTSAHSKSLLA 136
Query: 152 KYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSN 211
G +Q R++ + + + YVPN+G L ++++ WD+ F +++ L
Sbjct: 137 FIG-EAEHDQEDRIVA---ELASCVITYVPNAGRSLVRLEYQQCWDEAFCKFLKKPL--- 189
Query: 212 SNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRHLYPDEEG 270
++ G+LNV + I L NP N K A +T +ER+ F ELL L D RHLYP+
Sbjct: 190 ---VLCGNLNVTHEEIYLCNPKGNKKNADFTPQERQGFGELLQAVPLADNLRHLYPN--- 243
Query: 271 AYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLS 326
T + + N W L Y + I ++ SD HCP+ L L+
Sbjct: 244 --TVYGLHD-GCPPKNISWHLAYSFFYLHYDSKIWSKVLDSD-----HCPITLCLA 291
Score = 179 (68.1 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 55/230 (23%), Positives = 109/230 (47%)
Query: 10 KSDDENQIPKKQVKFDISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYT 69
+S++ N + K+Q K + KK K V+ + + +K ++ I H +
Sbjct: 6 RSENLNSVEKEQPKSEPETKKSKGAAKKTVLHEGPPD----QKTSQWPIRHTQ------- 54
Query: 70 TKVKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMF 129
+S+W V GL AC++K ++ + EE PDI+ LQ+ +C ++++ ++ +
Sbjct: 55 ----ISSWEVGGLPACIQKKG-LDCVKEETPDILCLQETKCSKNKLLAELQELPGLTRQY 109
Query: 130 WIG-SD-KGQGGVGLLTKE---KPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSG 184
W SD + GVGLL+ K L G +Q R++ + + + YVPN+G
Sbjct: 110 WSAPSDTEAYSGVGLLSTSAHSKSLLAFIG-EAEHDQEDRIVA---ELASCVITYVPNAG 165
Query: 185 IKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGD-LNVCLQSIDLANPD 233
L ++++ WD+ F +++ L N+ ++ + + +C + N D
Sbjct: 166 RSLVRLEYQQCWDEAFCKFLKKPLVLCGNLNVTHEEIYLCNPKGNKKNAD 215
>UNIPROTKB|F1M910 [details] [associations]
symbol:F1M910 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00781547 Ensembl:ENSRNOT00000055392 Uniprot:F1M910
Length = 294
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 86/296 (29%), Positives = 141/296 (47%)
Query: 42 KSDDENQIPKKQVKFDISHEEGSRKPYTTK-----VKVSTWNVNGLRACVKKNACVEYIL 96
KS+ E + K K + HE G T++ ++S+W V GL AC++K ++ +
Sbjct: 21 KSEPETKKSKGAAKKTVLHE-GPPDQKTSQWPIRHTQISSWEVGGLPACIQKKG-LDCVK 78
Query: 97 EENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SD-KGQGGVGLLTKE---KPLTV 151
EE PDI+ LQ+ +C ++++ ++ +W SD + GVGLL+ K L
Sbjct: 79 EETPDILCLQETKCSKNKLLAELQELPGLTRQYWSAPSDTEAYSGVGLLSTSAHSKSLLA 138
Query: 152 KYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSN 211
G +Q R++ + + + YVPN+G L ++++ WD+ F +++ L
Sbjct: 139 FIG-EAEHDQEDRIVA---ELASCVITYVPNAGRSLVRLEYQQCWDEAFCKFLKKPL--- 191
Query: 212 SNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRHLYPDEEG 270
++ G+LNV + I L NP N K A +T +ER+ F ELL L D RHLYP+
Sbjct: 192 ---VLCGNLNVTHEEIYLCNPKGNKKNADFTPQERQGFGELLQAVPLADNLRHLYPN--- 245
Query: 271 AYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLS 326
T + + N W L Y + I ++ SD HCP+ L L+
Sbjct: 246 --TVYGLHD-GCPPKNISWHLAYSFFYLHYDSKIWSKVLDSD-----HCPITLCLA 293
>UNIPROTKB|P09030 [details] [associations]
symbol:xthA "exonuclease III" species:83333 "Escherichia
coli K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IDA] [GO:0008853
"exodeoxyribonuclease III activity" evidence=IEA;IDA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
EchoBASE:EB1066 Pfam:PF03372 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0005622
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 EMBL:X13002
EMBL:M22592 PIR:E64934 RefSeq:NP_416263.1 RefSeq:YP_490010.1
PDB:1AKO PDBsum:1AKO ProteinModelPortal:P09030 SMR:P09030
DIP:DIP-11148N IntAct:P09030 MINT:MINT-1243969 SWISS-2DPAGE:P09030
PaxDb:P09030 PRIDE:P09030 EnsemblBacteria:EBESCT00000001718
EnsemblBacteria:EBESCT00000016194 GeneID:12932910 GeneID:946254
KEGG:ecj:Y75_p1724 KEGG:eco:b1749 PATRIC:32118809 EcoGene:EG11073
HOGENOM:HOG000034587 OMA:EVNAKRW ProtClustDB:PRK11756
BioCyc:EcoCyc:EG11073-MONOMER BioCyc:ECOL316407:JW1738-MONOMER
BioCyc:MetaCyc:EG11073-MONOMER EvolutionaryTrace:P09030
Genevestigator:P09030 GO:GO:0008853 Uniprot:P09030
Length = 268
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 84/268 (31%), Positives = 139/268 (51%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEEN-PDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
+K ++N+NGLRA + +E I+E++ PD++ LQ+ + +D P L Y++F+
Sbjct: 1 MKFVSFNINGLRARPHQ---LEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLG-YNVFY 56
Query: 131 IGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKRF----TFITVYVPNSGI 185
G KG GV LLTKE P+ V+ G PG + + R+I A+ T I Y P
Sbjct: 57 HGQ-KGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGES 115
Query: 186 KLKAIDF--RMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKNVKT----- 238
+ I F + + Q+ +Y+++EL+ ++ ++I GD+N+ +D+ ++N K
Sbjct: 116 RDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTG 175
Query: 239 -AGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVS 297
+ EER L+ GLVD FRH P ++++ +R+K +N+G R+D L S
Sbjct: 176 KCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFD-DNRGLRIDLLLAS 234
Query: 298 EQLANNIK----DCIIRSDVQGSTHCPV 321
+ LA D IRS + S H PV
Sbjct: 235 QPLAECCVETGIDYEIRSMEKPSDHAPV 262
>UNIPROTKB|G3V359 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V359 SMR:G3V359
Ensembl:ENST00000557592 ArrayExpress:G3V359 Bgee:G3V359
Uniprot:G3V359
Length = 172
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 62/167 (37%), Positives = 96/167 (57%)
Query: 34 KRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVE 93
K+S +K+D E + D ++ S +K+ +WNV+GLRA +KK ++
Sbjct: 7 KKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKG-LD 65
Query: 94 YILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTKEKPLTV 151
++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL+++ PL V
Sbjct: 66 WVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKV 125
Query: 152 KYGIPGVSN-QRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWD 197
YGI + Q GRVI A+F F +T YVPN+G L +++R WD
Sbjct: 126 SYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWD 172
>UNIPROTKB|F1M911 [details] [associations]
symbol:F1M911 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00777317 Ensembl:ENSRNOT00000055391 Uniprot:F1M911
Length = 278
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 88/296 (29%), Positives = 142/296 (47%)
Query: 42 KSDDENQIPKKQVKFDISHEEGSRKPYTTK-----VKVSTWNVNGLRACVKKNACVEYIL 96
KS+ E + K K + HE G T++ ++S+W V GL AC++K ++ +
Sbjct: 2 KSEPETKKSKGAAKKTVLHE-GPPDQKTSQWPIRHTQISSWEVGGLPACIQKKG-LDCVK 59
Query: 97 EENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SD-KGQGGVGLLTKE---KPLTV 151
EE PDI+ LQ+ +C ++++ ++ +W SD + GVGLL+ K L
Sbjct: 60 EETPDILCLQETKCSKNKLLAELQELPGLTRQYWSAPSDTEAYSGVGLLSTSAHSKSLLA 119
Query: 152 KYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSN 211
G +Q R++ + + + YVPN+G L ++++ WD+ F +++ L
Sbjct: 120 FIG-EAEHDQEDRIVA---ELASCVITYVPNAGRSLVRLEYQQCWDEAFCKFLKKPL--- 172
Query: 212 SNIIISGDLNVCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRHLYPDEEG 270
++ G+LNV + I L NP N K A +T +ER+ F ELL L D RHLYP+
Sbjct: 173 ---VLCGNLNVTHEEIYLCNPKGNKKNADFTPQERQGFGELLQAVPLADNLRHLYPNT-- 227
Query: 271 AYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLS 326
Y F + + R + L+S D I S V S HCP+ L L+
Sbjct: 228 --VYADFLDYMMDAHP---RTSF-LLSYSFFYLHYDSKIWSKVLDSDHCPITLCLA 277
>UNIPROTKB|G3V5M0 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V5M0 SMR:G3V5M0
Ensembl:ENST00000557150 ArrayExpress:G3V5M0 Bgee:G3V5M0
Uniprot:G3V5M0
Length = 162
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 58/154 (37%), Positives = 89/154 (57%)
Query: 34 KRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRACVKKNACVE 93
K+S +K+D E + D ++ S +K+ +WNV+GLRA +KK ++
Sbjct: 7 KKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKG-LD 65
Query: 94 YILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGLLTKEKPLTV 151
++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGLL+++ PL V
Sbjct: 66 WVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKV 125
Query: 152 KYGIPGVSN-QRGRVITAKFKRFTFITVYVPNSG 184
YGI + Q GRVI A+F F +T YVPN+G
Sbjct: 126 SYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAG 159
>UNIPROTKB|G3V3C7 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0045454 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V3C7 SMR:G3V3C7
Ensembl:ENST00000556054 ArrayExpress:G3V3C7 Bgee:G3V3C7
Uniprot:G3V3C7
Length = 174
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 59/161 (36%), Positives = 91/161 (56%)
Query: 25 DISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRA 84
D R + + K+S +K+D E + D ++ S +K+ +WNV+GLRA
Sbjct: 15 DELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRA 74
Query: 85 CVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIG-SDK-GQGGVGL 142
+KK ++++ EE PDI+ LQ+ +C E+++P ++ H +W SDK G GVGL
Sbjct: 75 WIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGL 133
Query: 143 LTKEKPLTVKYGIPGVSN-QRGRVITAKFKRFTFITVYVPN 182
L+++ PL V YGI + Q GRVI A+F F +T YVPN
Sbjct: 134 LSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPN 174
>TIGR_CMR|APH_0505 [details] [associations]
symbol:APH_0505 "exodeoxyribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
RefSeq:YP_505100.1 ProteinModelPortal:Q2GKK1 STRING:Q2GKK1
GeneID:3931256 KEGG:aph:APH_0505 PATRIC:20949650 OMA:DVQIGIP
ProtClustDB:CLSK747329 BioCyc:APHA212042:GHPM-529-MONOMER
Uniprot:Q2GKK1
Length = 273
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 73/271 (26%), Positives = 132/271 (48%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
++V TWNVN +R ++ + C + E + D+ LQ+I+C ++ P ++L Y +
Sbjct: 2 IRVITWNVNSIRKRIE-HLC-SVLSEHSIDVAMLQEIKCTNEQFPFVELEALG-YKCYVH 58
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGI--PG--------VSNQRGRVITAKF-----KRFTFI 176
G G + V Y + G S++ R I K+ +
Sbjct: 59 GQKSRNGVAIISKLPVVEVVSYSVLDEGKELESAGSYSSEESRYIECTLECTGNKKIRVV 118
Query: 177 TVYVPNSG-IKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKN 235
+VYVPN ++ + +++ + +H D + + +++ +I GD NV + ID+ +P
Sbjct: 119 SVYVPNGQEVESETFFYKLKFLEHLKDRLLNIMKTEDFLIAGGDFNVAPEEIDVHDPKAL 178
Query: 236 VKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHL 295
+ + ER FRE+L+ G+VD FR + +++W++R + NN+G R+D L
Sbjct: 179 DGRLCFHILERAKFREILNNGIVDIFRTFVGIDRKEFSWWNYREGGWQ-NNRGLRIDALL 237
Query: 296 VSEQLANNIKDCIIRSDVQG----STHCPVV 322
S Q+A+ + DC I S V+G S H PV+
Sbjct: 238 SSPQIADKVLDCSILSKVRGWDTPSDHAPVM 268
>UNIPROTKB|Q9KQY7 [details] [associations]
symbol:VC1860 "Exodeoxyribonuclease III" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0008853 "exodeoxyribonuclease III
activity" evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0005622 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 EMBL:AE004261
PIR:G82148 RefSeq:NP_231494.1 ProteinModelPortal:Q9KQY7 SMR:Q9KQY7
DNASU:2613614 GeneID:2613614 KEGG:vch:VC1860 PATRIC:20082762
Uniprot:Q9KQY7
Length = 268
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 75/270 (27%), Positives = 143/270 (52%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+KV ++N+NGLRA + + + I + PD++ LQ+I+ ++ P +++ Y +++
Sbjct: 1 MKVISFNINGLRARLHQLQAL--IDKHQPDVIGLQEIKVHDEAFPRQEVEAMG-YQVYFH 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKF-----KRFTFITVYVPNSGI 185
G K GV +L K+ P+ V G P + + + R+I A F ++ T + Y P G
Sbjct: 58 GQ-KAHYGVAILCKQTPVEVIKGFPTDNEEHQKRMIMATFADQNGQKTTILNGYFPQ-GD 115
Query: 186 KLKAIDFRMIWDQHFYDYIQSELR---SNSN-IIISGDLNVCLQSIDL----ANPDKNVK 237
++ + + + + FY + + LR SNS +++ GD+N+ +D+ AN + ++
Sbjct: 116 NVEH-ETKFPYKRQFYRDLMTYLREHRSNSERLVVMGDINISPLDLDIGIGEANRKRWLQ 174
Query: 238 TA--GYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHL 295
T + EER + LLD GLVD FR L+PD ++++ +R++ +N+G R+D L
Sbjct: 175 TGKCSFQPEEREWLQTLLDWGLVDTFRQLHPDVSDQFSWFDYRSRGFE-DNRGLRIDVIL 233
Query: 296 VSEQLANNIKDCIIRSDVQG----STHCPV 321
+ LA ++ I +++ S H P+
Sbjct: 234 ATPTLAETCQEAGIDYELRAIDKPSDHAPI 263
>TIGR_CMR|VC_1860 [details] [associations]
symbol:VC_1860 "exodeoxyribonuclease III" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0005622 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 EMBL:AE004261
PIR:G82148 RefSeq:NP_231494.1 ProteinModelPortal:Q9KQY7 SMR:Q9KQY7
DNASU:2613614 GeneID:2613614 KEGG:vch:VC1860 PATRIC:20082762
Uniprot:Q9KQY7
Length = 268
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 75/270 (27%), Positives = 143/270 (52%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+KV ++N+NGLRA + + + I + PD++ LQ+I+ ++ P +++ Y +++
Sbjct: 1 MKVISFNINGLRARLHQLQAL--IDKHQPDVIGLQEIKVHDEAFPRQEVEAMG-YQVYFH 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKF-----KRFTFITVYVPNSGI 185
G K GV +L K+ P+ V G P + + + R+I A F ++ T + Y P G
Sbjct: 58 GQ-KAHYGVAILCKQTPVEVIKGFPTDNEEHQKRMIMATFADQNGQKTTILNGYFPQ-GD 115
Query: 186 KLKAIDFRMIWDQHFYDYIQSELR---SNSN-IIISGDLNVCLQSIDL----ANPDKNVK 237
++ + + + + FY + + LR SNS +++ GD+N+ +D+ AN + ++
Sbjct: 116 NVEH-ETKFPYKRQFYRDLMTYLREHRSNSERLVVMGDINISPLDLDIGIGEANRKRWLQ 174
Query: 238 TA--GYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHL 295
T + EER + LLD GLVD FR L+PD ++++ +R++ +N+G R+D L
Sbjct: 175 TGKCSFQPEEREWLQTLLDWGLVDTFRQLHPDVSDQFSWFDYRSRGFE-DNRGLRIDVIL 233
Query: 296 VSEQLANNIKDCIIRSDVQG----STHCPV 321
+ LA ++ I +++ S H P+
Sbjct: 234 ATPTLAETCQEAGIDYELRAIDKPSDHAPI 263
>UNIPROTKB|F1PFY2 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0080111 "DNA demethylation" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0045739 "positive
regulation of DNA repair" evidence=IEA] [GO:0045454 "cell redox
homeostasis" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR004808
PROSITE:PS51435 GO:GO:0005739 GO:GO:0005813 GO:GO:0048471
GO:GO:0005730 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0080111 GO:GO:0003713
GO:GO:0090305 GO:GO:0045454 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0031490 GO:GO:0008081
GO:GO:0016890 GO:GO:0043488 EMBL:AAEX03000382
Ensembl:ENSCAFT00000035985 Uniprot:F1PFY2
Length = 284
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 74/223 (33%), Positives = 116/223 (52%)
Query: 106 QQIRCQEDEV---PESFRKSLSHYHMFWIGSDK-GQGGVGLLTKEKPLTVKYGIPGVSNQ 161
++ +C E+++ P+ + LSH + + SDK G GVGLL+ PL V YG +
Sbjct: 75 EETKCSENKLSAEPQELPE-LSHQYRS-VRSDKEGYRGVGLLSHPCPLKVSYG----TGD 128
Query: 162 RGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLN 221
+G + + F T YVPN+G L + WD F +++ L S++++ + GDL+
Sbjct: 129 KGHDLEGRVTEFVLETAYVPNTGGSLGCL-VAQCWDGAFCKFLKG-LASHTSLGLCGDLS 186
Query: 222 VCLQSIDLANPDKNVKTAGYTVEERRNFRELLDT-GLVDAFRHLYPDEEGAYTYWSF-RN 279
V + I L P N + AG+T +ER+ F ELL + + P+ AYT+W++ RN
Sbjct: 187 VAHEEIHLLYPKGNKQHAGFTRQERQGFGELLRLCHWLTVWGTSTPNLGYAYTFWTYVRN 246
Query: 280 KSARLNNKGWRLDYHLVSEQLAN--NIKDCIIRSDVQGSTHCP 320
+ + GW LDY L+S L + K C R+ GS HCP
Sbjct: 247 VPSIII--GWHLDYFLLSHSLLPLCDSKSCC-RA--LGSDHCP 284
>TIGR_CMR|ECH_0675 [details] [associations]
symbol:ECH_0675 "exodeoxyribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006281 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
OMA:EKAFSWW RefSeq:YP_507482.1 ProteinModelPortal:Q2GGF1
STRING:Q2GGF1 GeneID:3927975 KEGG:ech:ECH_0675 PATRIC:20576802
ProtClustDB:CLSK749128 BioCyc:ECHA205920:GJNR-677-MONOMER
Uniprot:Q2GGF1
Length = 281
Score = 188 (71.2 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 47/156 (30%), Positives = 79/156 (50%)
Query: 177 TVYVPNS-GIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKN 235
++YVPN I A +++ + ++ S L+ +I+ GD NV ID+ +P+
Sbjct: 126 SIYVPNGQSIDSDAFQYKLGFFDQLREHALSLLKKEEILILGGDYNVAPYPIDVYDPEVM 185
Query: 236 VKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHL 295
+ ER FR +L+ G D+FR L D E +++W+++ A N+G R+D L
Sbjct: 186 DGKLCFHKSEREKFRSILNLGFTDSFRVLN-DYEKKFSWWNYK-AGAWQQNRGLRIDNLL 243
Query: 296 VSEQLANNIKDCIIRSDVQG----STHCPVVLRLSL 327
+S Q + + C+I ++G S H PVV L L
Sbjct: 244 LSPQATDKLLSCVIHDKLRGLDTPSDHAPVVCELDL 279
Score = 98 (39.6 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 21/74 (28%), Positives = 43/74 (58%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K++TWNVN +R + + C +++ DI LQ+I+C +++ P +SL + ++
Sbjct: 3 LKIATWNVNSIRKRLD-HLC-NWLINSAIDIALLQEIKCTDEQFPFFDVESLGY--KCYV 58
Query: 132 GSDKGQGGVGLLTK 145
K + GV ++T+
Sbjct: 59 HGQKARNGVAIITR 72
>TIGR_CMR|SPO_2509 [details] [associations]
symbol:SPO_2509 "exodeoxyribonuclease III" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006281 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
RefSeq:YP_167724.1 ProteinModelPortal:Q5LQI1 GeneID:3194499
KEGG:sil:SPO2509 PATRIC:23378419 OMA:KYPYKLA ProtClustDB:CLSK933885
Uniprot:Q5LQI1
Length = 268
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 76/276 (27%), Positives = 137/276 (49%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVP-ESFRKSLSHYHMFW 130
+K++T+N+NG++A + A ++ PD+ LQ+I+ ++ P E F + Y++
Sbjct: 1 MKIATFNINGIKA--RAEALPAWLDSAQPDVALLQEIKSVDESFPREMFEER--GYNVET 56
Query: 131 IGSDKGQGGVGLLTKEKPLT-VKYGIPGV-SNQRGRVITAKF---KRFTFITVYVPNSG- 184
G KG GV +L+K PL V G+PG S+++ R I A + +Y+PN
Sbjct: 57 HGQ-KGFNGVAILSK-LPLEDVSRGLPGDDSDEQARWIEATVVGKQALRLCGLYLPNGNP 114
Query: 185 IKLKA---------IDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPDKN 235
++L D+++ W + + + +++GD N+ Q+ D P+
Sbjct: 115 VELTESGDPVPGGKYDYKLRWMERLQARATELMAAEEPALMAGDYNIIPQAEDAKRPEAW 174
Query: 236 VKTAGYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHL 295
+ A + E R FR +L+ G +AFR G Y++W ++ A N G R+D+ L
Sbjct: 175 REDALFRPESRAAFRRILNLGFTEAFRARVQGP-GHYSFWDYQ-AGAWNRNDGIRIDHFL 232
Query: 296 VSEQLANNIKDCIIRSDVQG----STHCPVVLRLSL 327
++ Q A+ ++DC I +V+G S H PV + L +
Sbjct: 233 LTPQAADLMRDCGIDKEVRGRDKPSDHVPVWVELDI 268
>TIGR_CMR|GSU_1539 [details] [associations]
symbol:GSU_1539 "exodeoxyribonuclease III" species:243231
"Geobacter sulfurreducens PCA" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 OMA:EVNAKRW
ProtClustDB:PRK11756 RefSeq:NP_952590.1 HSSP:P09030
ProteinModelPortal:Q74CY2 SMR:Q74CY2 GeneID:2687378
KEGG:gsu:GSU1539 PATRIC:22025925
BioCyc:GSUL243231:GH27-1521-MONOMER Uniprot:Q74CY2
Length = 271
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 77/271 (28%), Positives = 134/271 (49%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ ++NVNGLR+ + + E + PDI+ LQ+ + Q+ + P + ++L YH+ +
Sbjct: 1 MKLVSFNVNGLRS--RLHQLEELVRTHRPDIIGLQETKVQDADFPLAAVQALG-YHVIYH 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKR-----FTFITVYVPNSGI 185
G K GV LL+ + P V+ G+PG ++ + R I A F I Y P
Sbjct: 58 GQ-KTHHGVALLSLQPPRDVRLGLPGDGDEAQKRFIGATFDLPAGPPLRVINGYFPQGES 116
Query: 186 KLKAIDFRMIWDQHFY-D---YIQSELRSNSNIIISGDLNVCLQSIDLA----NPDKNVK 237
+ + F + FY D Y++S ++ + + GD N+ D+ N + ++
Sbjct: 117 RDHPVKFPA--KERFYADVLAYLKSSCDPDAPLAVMGDFNIAPVDPDIGIGADNAKRWLR 174
Query: 238 TA--GYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNK-GWRLDYH 294
T + EER F L D GL D++R LYPD + ++++ +R++ K G R+D+
Sbjct: 175 TGKTSFLPEERAWFAALRDWGLHDSYRELYPDIDDRFSWFDYRSRGFESEPKRGLRIDHI 234
Query: 295 LVSEQLANNIK----DCIIRSDVQGSTHCPV 321
L++ L + D IR+ + S HCPV
Sbjct: 235 LLTRPLQQACRAAGIDYDIRAMEKPSDHCPV 265
>TIGR_CMR|SO_3037 [details] [associations]
symbol:SO_3037 "exodeoxyribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435 Pfam:PF03372
GO:GO:0003677 GO:GO:0006281 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 RefSeq:NP_718605.1
ProteinModelPortal:Q8ECT7 GeneID:1170722 KEGG:son:SO_3037
PATRIC:23525710 Uniprot:Q8ECT7
Length = 270
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 76/272 (27%), Positives = 136/272 (50%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWI 131
+K+ ++N+NGLR+ + + + I PDI+ LQ+ + ++ P + +++ YH+ +
Sbjct: 1 MKIVSFNINGLRSRLHQLQAL--IDSHQPDIIGLQETKVHDEAFPLAEVEAMG-YHVHYH 57
Query: 132 GSDKGQGGVGLLTKEKPLTVKYGIP-GVSNQRGRVITAKFKR-----FTFITVYVPNSGI 185
G K GV +L+K PL V+ G + + R+I F + T + Y P
Sbjct: 58 GG-KAHYGVAMLSKVAPLKVQKGFATDEEDAQRRMIIGTFAQANGRPLTVLNGYFPQG-- 114
Query: 186 KLKAIDFRMIWD--QHFYDYIQSELRSN-SN---IIISGDLNVCLQSIDLANPDKN---- 235
++ID + + FY + + L +N SN I I GD+N+ +D+ + N
Sbjct: 115 --ESIDHPTKYPAKRKFYQDLMAHLHANHSNDEDIAIIGDINISPIDLDIGIGEVNRKRW 172
Query: 236 VKTA--GYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDY 293
+KT + EER + L D GLVD FR L+PD Y+++ +R+K +N+G R+D
Sbjct: 173 LKTGKCSFQPEEREWLKTLQDWGLVDTFRQLHPDRSERYSWFDYRSKGFD-DNRGLRIDV 231
Query: 294 HLVSEQLANNIKDCIIRSDVQG----STHCPV 321
L + LA + + + +++G S H P+
Sbjct: 232 ILATPSLAARLVESDVDYELRGIDKPSDHAPI 263
>TAIR|locus:505006392 [details] [associations]
symbol:AT3G48425 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=ISS] [GO:0009507 "chloroplast"
evidence=IDA] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0009507 EMBL:CP002686 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:BT015809
EMBL:BT020215 IPI:IPI00532252 RefSeq:NP_566904.2 UniGene:At.50257
ProteinModelPortal:Q5XF07 SMR:Q5XF07 STRING:Q5XF07 PaxDb:Q5XF07
PRIDE:Q5XF07 EnsemblPlants:AT3G48425.1 GeneID:824001
KEGG:ath:AT3G48425 OMA:KWDKRML ProtClustDB:CLSN2680895
Genevestigator:Q5XF07 Uniprot:Q5XF07
Length = 364
Score = 215 (80.7 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
Identities = 66/189 (34%), Positives = 92/189 (48%)
Query: 163 GRVITAKFKRFTFITVYVPNSGIKLK--AIDFRMIWDQHFYDYIQSELRSNSNIIISGDL 220
GRVI A+F+ F + Y PN+G K + A R WD+ +++ S+ +I GDL
Sbjct: 166 GRVILAEFETFRLLNTYSPNNGWKDEENAFQRRRKWDKRIVEFLNKT--SDKPLIWCGDL 223
Query: 221 NVCLQSIDLANPD--KNVKTAGY-------------TVEERRNFRELLDTG-LVDAFRHL 264
NV + ID+++P+ K GY T ER F + G LVDA+R+L
Sbjct: 224 NVSHEEIDVSHPEFFATAKLNGYVPPNKEDCGQPGFTPSERGRFGATIKEGRLVDAYRYL 283
Query: 265 YPDEEGAYTY-WSFRNKSARLNNKGWRLDYHLVSEQLANNIKDC------IIRSDVQGST 317
+ ++E + WS N + K R+DY LVSEQL + I C I GS
Sbjct: 284 HKEQEMESGFSWS-GNPIGKYRGKRMRIDYFLVSEQLKDRIVSCKMHGRGIELEGFHGSD 342
Query: 318 HCPVVLRLS 326
HCPV L LS
Sbjct: 343 HCPVTLELS 351
Score = 147 (56.8 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 39/126 (30%), Positives = 66/126 (52%)
Query: 125 HYHMFWIGSDKGQGGVGLLTKE--KPLTVKYGIPGVSNQR---GRVITAKFKRFTFITVY 179
+Y ++W +D G LL K+ KP V + + ++++ GRVI A+F+ F + Y
Sbjct: 123 NYGVWWSLADSKYAGTALLVKKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRLLNTY 182
Query: 180 VPNSGIKLK--AIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLANPD--KN 235
PN+G K + A R WD+ +++ S+ +I GDLNV + ID+++P+
Sbjct: 183 SPNNGWKDEENAFQRRRKWDKRIVEFLNKT--SDKPLIWCGDLNVSHEEIDVSHPEFFAT 240
Query: 236 VKTAGY 241
K GY
Sbjct: 241 AKLNGY 246
Score = 62 (26.9 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 73 KVSTWNVNGLRACVKKN--ACVEYILEENPDIMALQQIR 109
K TWN N VK + +++ + +PD++A+Q++R
Sbjct: 44 KFMTWNANSFLLRVKNDWSQFSKFVSDFDPDVIAIQEVR 82
>POMBASE|SPBC3D6.10 [details] [associations]
symbol:apn2 "AP-endonuclease Apn2" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004528 "phosphodiesterase I activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006284 "base-excision
repair" evidence=IC] [GO:0008311 "double-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IMP] [GO:0034614
"cellular response to reactive oxygen species" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 PomBase:SPBC3D6.10
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0034614 GO:GO:0004519
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 GO:GO:0004528 KO:K10772
OMA:FIDSYRC GO:GO:0008311 EMBL:AY483158 PIR:T40370
RefSeq:NP_595522.1 ProteinModelPortal:P87175 STRING:P87175
EnsemblFungi:SPBC3D6.10.1 GeneID:2540679 KEGG:spo:SPBC3D6.10
OrthoDB:EOG4GQTDH NextBio:20801803 Uniprot:P87175
Length = 523
Score = 189 (71.6 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
Identities = 56/174 (32%), Positives = 89/174 (51%)
Query: 160 NQRGRVITAKFKRFTFITVYVP-NSGIKLKAIDFRMIWDQHFYDYIQSELRS-NSNIIIS 217
+ GR I F+ F I VY P NSG +++R + + + I+ ++ N II+
Sbjct: 132 DSEGRCILLDFQMFILIGVYCPVNSGEN--RLEYRRAFYKALRERIERLIKEGNRKIILV 189
Query: 218 GDLNVCLQSIDLANPDKNVKTA--GYTVEERRNFRELL---DTGLV-DAFRHLYPDEEGA 271
GD+N+ ID A+ ++ + +E R+ R+LL GL+ D R +P +G
Sbjct: 190 GDVNILCNPIDTADQKDIIRESLIPSIMESRQWIRDLLLPSRLGLLLDIGRIQHPTRKGM 249
Query: 272 YTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRL 325
+T W+ R + R N G R+DY L + L ++D I ++V GS HCPV L L
Sbjct: 250 FTCWNTR-LNTRPTNYGTRIDYTLATPDLLPWVQDADIMAEVMGSDHCPVYLDL 302
Score = 104 (41.7 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
Identities = 29/104 (27%), Positives = 51/104 (49%)
Query: 72 VKVSTWNVNGLRACV------KKNACVEYILEENPDIMALQQIRCQEDEVPESFR--KSL 123
+++ +WNVNG++ KKN+ E E D++ +Q+++ Q+D P+ + +
Sbjct: 1 MRILSWNVNGIQNPFNYFPWNKKNSYKEIFQELQADVICVQELKMQKDSFPQQYAVVEGF 60
Query: 124 SHYHMFWIGSDKGQGGVGLLTKEK---PLTVKYGIPGVSNQRGR 164
Y F KG GVG K+ P+ + GI G+ RG+
Sbjct: 61 DSYFTF-PKIRKGYSGVGFYVKKDVAIPVKAEEGITGILPVRGQ 103
>TIGR_CMR|SPO_3425 [details] [associations]
symbol:SPO_3425 "exodeoxyribonuclease III, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587
RefSeq:YP_168621.1 ProteinModelPortal:Q5LMY7 GeneID:3195340
KEGG:sil:SPO3425 PATRIC:23380309 OMA:KWVDITR ProtClustDB:CLSK863995
Uniprot:Q5LMY7
Length = 262
Score = 202 (76.2 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 76/270 (28%), Positives = 134/270 (49%)
Query: 74 VSTWNVNGLRACVKKNACVEYILEENPDIMALQQIRCQEDEVP-ESFRKSLSHYHMFWIG 132
++TWN+N +R +++ + + EE PDI+ LQ+I+ D++P E F L + H+ G
Sbjct: 5 LATWNINSVR--LREPIVCKLLAEEGPDILCLQEIKSPVDKMPVEGFA-DLGYRHVVAHG 61
Query: 133 SDKGQGGVGLLTKEKPLTVKYGIPGVSNQ-RGRVITAKFKR-FTFITVYVPNSG-IKLKA 189
KG GV +L++ P+ + G + R + A+ + T YVP G + +
Sbjct: 62 Q-KGYNGVAILSR-LPIE-EVGREDFATLGHARHVAARLENGVTIHNFYVPAGGDVPDRE 118
Query: 190 IDFRMIWDQHFYDYIQSELRS--NSNI----IISGDLNVCLQSIDLANPDKNVKTAGYTV 243
++ + + Q DY+ +E+R ++N I+ GDLN+ + D+ N + +K +T
Sbjct: 119 VNEK--FGQKL-DYL-TEMRDWFHANAPEKSILVGDLNIAPREDDVWNHKQLLKIVSHTP 174
Query: 244 EERRNFRELLDTGL-VDAFRHLYPDEEGA-YTYWSFRNKSARLNNKGWRLDYHLVSEQLA 301
E + +++D+G VD R P +G Y++WS+R K +KG RLD+ + ++
Sbjct: 175 IEVDHLGQVMDSGKWVDITRQDIP--QGLLYSWWSYRAKDWSAADKGRRLDHVWATPDIS 232
Query: 302 NNIKDCIIRSDVQG----STHCPVVLRLSL 327
N I D +G S H PV L
Sbjct: 233 NAGHSSRILRDARGWEQPSDHAPVFASFDL 262
>UNIPROTKB|F1MSK4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005743 "mitochondrial inner
membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005743 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 IPI:IPI00696158 UniGene:Bt.1184
OMA:FIDSYRC EMBL:DAAA02073320 EMBL:DAAA02073321
Ensembl:ENSBTAT00000017537 ArrayExpress:F1MSK4 Uniprot:F1MSK4
Length = 514
Score = 141 (54.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 53/172 (30%), Positives = 85/172 (49%)
Query: 169 KFKRFTFITVYVPNSGI-KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSI 227
K K T I VY P++ K + + F+M + + ++ L + S++II GDLN + I
Sbjct: 146 KEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPI 205
Query: 228 DLANPDKNVKTAGYTVEERRNFRE-LL-----DTG-----LVDAFRHLYPDEEGAYTYWS 276
D + D V + + R + + LL ++G +D++R P ++GA+T WS
Sbjct: 206 D--HWDA-VNMECFEEDPGRKWMDGLLSNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWS 262
Query: 277 FRNKSARLNNKGWRLDYHLVSEQLA-NNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ AR N G RLDY L L + + + +V GS HCPV LS+
Sbjct: 263 TVS-GARHLNYGSRLDYVLGDRTLVIDTFQSSFLLPEVMGSDHCPVGAVLSV 313
Score = 78 (32.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 27/109 (24%), Positives = 53/109 (48%)
Query: 72 VKVSTWNVNGLRA------CVKKNAC----VEYILEE-NPDIMALQQIRCQEDEVPESFR 120
+++ +WN+NG+R+ C + ++C + IL++ + DI+ LQ+ + D + E
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 121 KSLSHYHMFWIGSDK-GQGGVGLLTKEK--PLTVKYGIPGV-SNQRGRV 165
+ F ++ G GV K+ P+ + G+ G+ S Q G V
Sbjct: 62 IIEGYNSYFSFSRNRSGYSGVATFCKDSATPVAAEEGLSGLLSTQNGDV 110
>UNIPROTKB|Q5E9N9 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:BT020881 EMBL:BT021707 IPI:IPI00696158
RefSeq:NP_001015577.1 UniGene:Bt.1184 ProteinModelPortal:Q5E9N9
STRING:Q5E9N9 PRIDE:Q5E9N9 GeneID:511790 KEGG:bta:511790 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 InParanoid:Q5E9N9 KO:K10772
OrthoDB:EOG4NS3BQ NextBio:20870098 Uniprot:Q5E9N9
Length = 514
Score = 141 (54.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 53/172 (30%), Positives = 85/172 (49%)
Query: 169 KFKRFTFITVYVPNSGI-KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSI 227
K K T I VY P++ K + + F+M + + ++ L + S++II GDLN + I
Sbjct: 146 KEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPI 205
Query: 228 DLANPDKNVKTAGYTVEERRNFRE-LL-----DTG-----LVDAFRHLYPDEEGAYTYWS 276
D + D V + + R + + LL ++G +D++R P ++GA+T WS
Sbjct: 206 D--HWDA-VNMECFEEDPGRKWMDGLLSNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWS 262
Query: 277 FRNKSARLNNKGWRLDYHLVSEQLA-NNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ AR N G RLDY L L + + + +V GS HCPV LS+
Sbjct: 263 TVS-GARHLNYGSRLDYVLGDRTLVIDTFQSSFLLPEVMGSDHCPVGAVLSV 313
Score = 78 (32.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 27/109 (24%), Positives = 53/109 (48%)
Query: 72 VKVSTWNVNGLRA------CVKKNAC----VEYILEE-NPDIMALQQIRCQEDEVPESFR 120
+++ +WN+NG+R+ C + ++C + IL++ + DI+ LQ+ + D + E
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 121 KSLSHYHMFWIGSDK-GQGGVGLLTKEK--PLTVKYGIPGV-SNQRGRV 165
+ F ++ G GV K+ P+ + G+ G+ S Q G V
Sbjct: 62 IIEGYNSYFSFSRNRSGYSGVATFCKDSATPVAAEEGLSGLLSTQNGDV 110
>ZFIN|ZDB-GENE-040426-835 [details] [associations]
symbol:apex2 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
ZFIN:ZDB-GENE-040426-835 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:27301 HOVERGEN:HBG054715 KO:K10772 HSSP:P27695 EMBL:BC044527
IPI:IPI00484464 RefSeq:NP_956440.1 UniGene:Dr.116061
ProteinModelPortal:Q803D4 STRING:Q803D4 GeneID:393115
KEGG:dre:393115 InParanoid:Q803D4 NextBio:20814188
ArrayExpress:Q803D4 Uniprot:Q803D4
Length = 558
Score = 125 (49.1 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 32/95 (33%), Positives = 46/95 (48%)
Query: 234 KNVKTAGYTVEERRNFRELLDTG-LVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLD 292
+N + E +F+E G VD+FR+ +P A+T WS AR N G R+D
Sbjct: 219 ENSENGNAADEPAEDFQESASGGKFVDSFRYFHPKRSNAFTCWSTLT-GARQTNYGTRID 277
Query: 293 YHLVSEQLANNIKDCI-IRSDVQGSTHCPVVLRLS 326
Y + L + I +V+GS HCPV +LS
Sbjct: 278 YIFSNHSLVKTFFIGVDIMPEVEGSDHCPVWAQLS 312
Score = 94 (38.1 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 29/100 (29%), Positives = 50/100 (50%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEVPE--SFRKSLSHYHM 128
+K+ TWN+NG+R KN ++ IL+ + DI+ +Q+ + D + E + + Y
Sbjct: 1 MKIVTWNINGIRTF--KNG-IKKILDSFDADIICVQETKVTRDLLDEKTAIVDGYNSYFS 57
Query: 129 FWIGSDKGQGGVGLLTKEK--PLTVKYGIPGVSNQRGRVI 166
F G G GV K+ P + G+ G+ + +G VI
Sbjct: 58 FSRGRS-GYSGVATYCKDAATPFLAEEGLTGLLSNQGAVI 96
Score = 72 (30.4 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 25/92 (27%), Positives = 44/92 (47%)
Query: 143 LTKEKPLTVKYGIPGVSNQRGRVITAKFKRFTFITVYVPNSGI-KLKAIDFRMIWDQHFY 201
LT E+ L + V Q + ++ T I VY P + K + +F++ + +
Sbjct: 105 LTSEELLALDNEGRAVITQHHFIGQDGLQKLTVINVYCPRADPDKPERKEFKLQFYRLLQ 164
Query: 202 DYIQSELRSNSNIIISGDLNVCLQSIDLANPD 233
++ L S S++II GD+N + ID +PD
Sbjct: 165 CRAEAILSSGSHVIILGDVNTSHRPIDHCDPD 196
>UNIPROTKB|Q2KFC8 [details] [associations]
symbol:MGCH7_ch7g758 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 EMBL:CM000230
ProteinModelPortal:Q2KFC8 Uniprot:Q2KFC8
Length = 626
Score = 123 (48.4 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 34/87 (39%), Positives = 43/87 (49%)
Query: 240 GYTVEERRNFRELLDTGLVDAFRHLYPDEEGAYTYWSFRNKSARLNNKGWRLDYHLVSEQ 299
G V R RE + + D R +PD G YT W R K+AR N G R+DY L S
Sbjct: 208 GTVVGGRDEGRE--EPVMYDLGREFHPDRIGMYTCWETR-KNARPGNFGSRIDYVLCSAG 264
Query: 300 LANNIKDCIIRSDVQGSTHCPVVLRLS 326
+ + D I+ + GS HCPV LS
Sbjct: 265 MKDWFIDANIQEGLLGSDHCPVYATLS 291
Score = 84 (34.6 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 19/86 (22%), Positives = 42/86 (48%)
Query: 160 NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGD 219
+ GR + +F F I VY P + + + DFR + + +++ + ++++GD
Sbjct: 107 DSEGRCMILEFPAFVLIGVYSPATRDETRT-DFRQAFHKAMDARVRNLVAMGKQVVLTGD 165
Query: 220 LNVCLQSIDLANPDKNVKTAGYTVEE 245
LN+ +D A + ++ T++E
Sbjct: 166 LNIIRNELDTAGILERLRKEEMTIDE 191
>RGD|1586200 [details] [associations]
symbol:Apex2l1 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2-like 1" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 RGD:1586200 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
KO:K10772 OrthoDB:EOG4NS3BQ OMA:FIDSYRC IPI:IPI00364584
RefSeq:XP_001059968.1 RefSeq:XP_223499.3 PRIDE:D3ZHV4
Ensembl:ENSRNOT00000038157 GeneID:289662 KEGG:rno:289662
NextBio:630125 Uniprot:D3ZHV4
Length = 516
Score = 160 (61.4 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 68/236 (28%), Positives = 106/236 (44%)
Query: 110 CQEDEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVIT-- 167
C++ P + + LS G G + T+E+ + + Q ++ T
Sbjct: 85 CKDSVTPVAAEEGLSGQFATLSGHVGCYGNMNEFTQEQLRALDSEGRALLTQH-KICTQE 143
Query: 168 AKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQ--SE--LRSNSNIIISGDLNVC 223
K K T I VY P++ R+ + FY +Q +E L + S++II GD+N
Sbjct: 144 GKEKPLTLINVYCPHAS---PGNHERLTFKMRFYRLLQIRAEALLAAGSHVIILGDINTA 200
Query: 224 LQSIDLANPDKNVKTAGYTVEERRNFRELLDT---------G-LVDAFRHLYPDEEGAYT 273
ID N N++ + RR LL G +D++R+ YP +E A+T
Sbjct: 201 HHPIDHCNAG-NLECFEEDLG-RRWMDGLLSNLEYPAGSHIGPFMDSYRYFYPKQERAFT 258
Query: 274 YWSFRNKSARLNNKGWRLDYHLVSEQLA-NNIKDCIIRSDVQGSTHCPV--VLRLS 326
WS + AR N G RLDY L + L + ++D + +V GS HCPV VL +S
Sbjct: 259 CWSMIS-GARSLNYGTRLDYILGNRDLIIDTLQDAFLLPEVMGSDHCPVGAVLNVS 313
>GENEDB_PFALCIPARUM|PFC0250c [details] [associations]
symbol:PFC0250c "AP endonuclease (DNA-(apurinic
or apyrimidinic site) lyase), putative" species:5833 "Plasmodium
falciparum" [GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase
activity" evidence=ISS] [GO:0020011 "apicoplast" evidence=ISS]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL844502
GO:GO:0020011 HSSP:P27695 RefSeq:XP_001351132.1
ProteinModelPortal:O97240 PRIDE:O97240
EnsemblProtists:PFC0250c:mRNA GeneID:814374 KEGG:pfa:PFC0250c
EuPathDB:PlasmoDB:PF3D7_0305600 KO:K01741 ProtClustDB:CLSZ2431892
Uniprot:O97240
Length = 617
Score = 147 (56.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 50/188 (26%), Positives = 93/188 (49%)
Query: 98 ENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPL-TVKYGI- 155
+N D +L E + + F K + Y F + + K G + L+ K + +++Y +
Sbjct: 349 KNSDQKSLADYEIMEQILNDDF-KDYNAY--FSLANIKYSGQLVLVKKNIHIESIRYNLF 405
Query: 156 ----PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSN 211
+ + GRVI +F F ++ Y PN+G + R ++D+ ++ + LR+
Sbjct: 406 FENNAHIHHDEGRVILVEFSNFFLLSTYTPNNGFDHVKFERRRLFDEQLQKFV-TILRNE 464
Query: 212 SN--IIISGDLNVCLQSIDLANPDK-------NVKTA-----GYTVEERRNFRELLDTG- 256
++ +GDLN+ + IDL++P + NV G T ER+NF+++L G
Sbjct: 465 KQKPLVWTGDLNIAPEDIDLSHPAEFRRMKKGNVPKEFIGQPGCTDFERKNFQKILTAGN 524
Query: 257 LVDAFRHL 264
LVD++R+L
Sbjct: 525 LVDSYRYL 532
Score = 56 (24.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 27/121 (22%), Positives = 51/121 (42%)
Query: 6 DV-IQKSDDENQIPKKQVKFDISRKKKKMKRSADVIQKSDDENQIPKKQVK-FDISHEEG 63
DV ++ +D E + +KQ K +K D + ++ N KK+ + DI +E
Sbjct: 200 DVKLEMNDKEEEEEEKQ-KIGQESTHINIKVEKDTFNECNNSNVNEKKRNRSVDIHNELS 258
Query: 64 SRKPYTTKVKVS-----------TWNVNGLRACVKK----NACVEYILEENPDIMALQQI 108
+++ T V V TWN+N + K + + + N D++ Q++
Sbjct: 259 NKRILTEDVVVKCNIKNDVKIIVTWNMNSITVRYKNKKKWDEFMNFFNNLNADVLCFQEV 318
Query: 109 R 109
R
Sbjct: 319 R 319
>UNIPROTKB|O97240 [details] [associations]
symbol:PFC0250c "AP endonuclease (DNA-[apurinic or
apyrimidinic site] lyase), putative" species:36329 "Plasmodium
falciparum 3D7" [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL844502 GO:GO:0020011 HSSP:P27695
RefSeq:XP_001351132.1 ProteinModelPortal:O97240 PRIDE:O97240
EnsemblProtists:PFC0250c:mRNA GeneID:814374 KEGG:pfa:PFC0250c
EuPathDB:PlasmoDB:PF3D7_0305600 KO:K01741 ProtClustDB:CLSZ2431892
Uniprot:O97240
Length = 617
Score = 147 (56.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 50/188 (26%), Positives = 93/188 (49%)
Query: 98 ENPDIMALQQIRCQEDEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPL-TVKYGI- 155
+N D +L E + + F K + Y F + + K G + L+ K + +++Y +
Sbjct: 349 KNSDQKSLADYEIMEQILNDDF-KDYNAY--FSLANIKYSGQLVLVKKNIHIESIRYNLF 405
Query: 156 ----PGVSNQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSELRSN 211
+ + GRVI +F F ++ Y PN+G + R ++D+ ++ + LR+
Sbjct: 406 FENNAHIHHDEGRVILVEFSNFFLLSTYTPNNGFDHVKFERRRLFDEQLQKFV-TILRNE 464
Query: 212 SN--IIISGDLNVCLQSIDLANPDK-------NVKTA-----GYTVEERRNFRELLDTG- 256
++ +GDLN+ + IDL++P + NV G T ER+NF+++L G
Sbjct: 465 KQKPLVWTGDLNIAPEDIDLSHPAEFRRMKKGNVPKEFIGQPGCTDFERKNFQKILTAGN 524
Query: 257 LVDAFRHL 264
LVD++R+L
Sbjct: 525 LVDSYRYL 532
Score = 56 (24.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 27/121 (22%), Positives = 51/121 (42%)
Query: 6 DV-IQKSDDENQIPKKQVKFDISRKKKKMKRSADVIQKSDDENQIPKKQVK-FDISHEEG 63
DV ++ +D E + +KQ K +K D + ++ N KK+ + DI +E
Sbjct: 200 DVKLEMNDKEEEEEEKQ-KIGQESTHINIKVEKDTFNECNNSNVNEKKRNRSVDIHNELS 258
Query: 64 SRKPYTTKVKVS-----------TWNVNGLRACVKK----NACVEYILEENPDIMALQQI 108
+++ T V V TWN+N + K + + + N D++ Q++
Sbjct: 259 NKRILTEDVVVKCNIKNDVKIIVTWNMNSITVRYKNKKKWDEFMNFFNNLNADVLCFQEV 318
Query: 109 R 109
R
Sbjct: 319 R 319
>UNIPROTKB|G3V5D9 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0045454 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V5D9 SMR:G3V5D9 Ensembl:ENST00000557181
ArrayExpress:G3V5D9 Bgee:G3V5D9 Uniprot:G3V5D9
Length = 108
Score = 133 (51.9 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 25 DISRKKKKMKRSADVIQKSDDENQIPKKQVKFDISHEEGSRKPYTTKVKVSTWNVNGLRA 84
D R + + K+S +K+D E + D ++ S +K+ +WNV+GLRA
Sbjct: 15 DELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRA 74
Query: 85 CVKKNACVEYILEENPDIMALQQIRCQEDEVP 116
+KK ++++ EE PDI+ LQ+ +C E+++P
Sbjct: 75 WIKKKG-LDWVKEEAPDILCLQETKCSENKLP 105
>MGI|MGI:1924872 [details] [associations]
symbol:Apex2 "apurinic/apyrimidinic endonuclease 2"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 MGI:MGI:1924872
GO:GO:0005634 GO:GO:0005743 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 CTD:27301
HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ EMBL:AB072498
EMBL:AB085235 EMBL:AK021248 EMBL:AK040145 EMBL:AK050858
EMBL:AK080916 EMBL:AK081677 EMBL:AK088918 EMBL:BC026769
EMBL:BC078633 IPI:IPI00225176 IPI:IPI00473955 IPI:IPI00473962
IPI:IPI00474999 IPI:IPI00828973 RefSeq:NP_084219.1
UniGene:Mm.440275 ProteinModelPortal:Q68G58 SMR:Q68G58
STRING:Q68G58 PhosphoSite:Q68G58 PRIDE:Q68G58
Ensembl:ENSMUST00000112725 Ensembl:ENSMUST00000112727 GeneID:77622
KEGG:mmu:77622 NextBio:347242 Bgee:Q68G58 CleanEx:MM_APEX2
Genevestigator:Q68G58 GermOnline:ENSMUSG00000025269 Uniprot:Q68G58
Length = 516
Score = 155 (59.6 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 63/233 (27%), Positives = 107/233 (45%)
Query: 110 CQEDEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLTV-KYGIPGVSNQRGRVITA 168
C++ P + + LS G G + T+E+ + G ++ + R +
Sbjct: 85 CKDSATPVAAEEGLSGVFATLNGDIGCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEG 144
Query: 169 KFKRFTFITVYVPNSGI-KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSI 227
K K T I VY P++ K + + F+M + + ++ L + S++II GDLN + I
Sbjct: 145 KEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPI 204
Query: 228 DLANPDKNVKTAGYTVEERRNFRE-LLDT---------GL-VDAFRHLYPDEEGAYTYWS 276
D + + + R + + LL GL +D++R+L+P ++ A+T WS
Sbjct: 205 DHCDASS---LECFEEDPGRKWMDGLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWS 261
Query: 277 FRNKSARLNNKGWRLDYHLVSEQLA-NNIKDCIIRSDVQGSTHCPV--VLRLS 326
+ AR N G RLDY L L + + + +V GS HCPV VL +S
Sbjct: 262 VVS-GARHLNYGSRLDYVLGDRALVIDTFQASFLLPEVMGSDHCPVGAVLNVS 313
>UNIPROTKB|E2RCW8 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 EMBL:AAEX03026400
EMBL:AAEX03026401 Ensembl:ENSCAFT00000022737 Uniprot:E2RCW8
Length = 515
Score = 153 (58.9 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 64/232 (27%), Positives = 104/232 (44%)
Query: 110 CQEDEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLTV-KYGIPGVSNQRGRVITA 168
C++ P + + LS G G + T+E+ + G ++ + R
Sbjct: 86 CKDSATPMAAEEGLSGLLATHNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEG 145
Query: 169 KFKRFTFITVYVPNSGI-KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSI 227
K K T I VY P++ K + + F+M + + ++ L + S++II GDLN I
Sbjct: 146 KQKTLTLINVYCPHADAGKPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPI 205
Query: 228 DLANPDKNVKTAGYTVEERRNFRELLDTGL-----------VDAFRHLYPDEEGAYTYWS 276
D + D V + + R + + L + L +D++R P +EGA+T WS
Sbjct: 206 D--HWDA-VNLECFEEDPGRKWMDGLLSNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWS 262
Query: 277 FRNKSARLNNKGWRLDYHLVSEQLA-NNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ AR N G RLDY L L + +D + +V GS HCPV LS+
Sbjct: 263 AVS-GARHLNYGSRLDYVLGDRTLVIDTFQDSFLLPEVMGSDHCPVGAVLSV 313
>UNIPROTKB|J9NYZ7 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 OMA:FIDSYRC
EMBL:AAEX03026400 EMBL:AAEX03026401 Ensembl:ENSCAFT00000049032
Uniprot:J9NYZ7
Length = 515
Score = 153 (58.9 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 64/232 (27%), Positives = 104/232 (44%)
Query: 110 CQEDEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLTV-KYGIPGVSNQRGRVITA 168
C++ P + + LS G G + T+E+ + G ++ + R
Sbjct: 86 CKDSATPMAAEEGLSGLLATHNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEG 145
Query: 169 KFKRFTFITVYVPNSGI-KLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSI 227
K K T I VY P++ K + + F+M + + ++ L + S++II GDLN I
Sbjct: 146 KQKTLTLINVYCPHADAGKPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPI 205
Query: 228 DLANPDKNVKTAGYTVEERRNFRELLDTGL-----------VDAFRHLYPDEEGAYTYWS 276
D + D V + + R + + L + L +D++R P +EGA+T WS
Sbjct: 206 D--HWDA-VNLECFEEDPGRKWMDGLLSNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWS 262
Query: 277 FRNKSARLNNKGWRLDYHLVSEQLA-NNIKDCIIRSDVQGSTHCPVVLRLSL 327
+ AR N G RLDY L L + +D + +V GS HCPV LS+
Sbjct: 263 AVS-GARHLNYGSRLDYVLGDRTLVIDTFQDSFLLPEVMGSDHCPVGAVLSV 313
>UNIPROTKB|Q9UBZ4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0005743
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0007049 GO:GO:0006310 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ
EMBL:AB049211 EMBL:AJ011311 EMBL:AB021260 EMBL:AF119046
EMBL:AY884244 EMBL:AL020991 EMBL:BC002959 IPI:IPI00083281
RefSeq:NP_055296.2 UniGene:Hs.659558 ProteinModelPortal:Q9UBZ4
SMR:Q9UBZ4 IntAct:Q9UBZ4 MINT:MINT-1439290 STRING:Q9UBZ4
PhosphoSite:Q9UBZ4 DMDM:73921676 PeptideAtlas:Q9UBZ4 PRIDE:Q9UBZ4
DNASU:27301 Ensembl:ENST00000374987 GeneID:27301 KEGG:hsa:27301
UCSC:uc004dtz.3 GeneCards:GC0XP055043 HGNC:HGNC:17889 HPA:HPA030872
MIM:300773 neXtProt:NX_Q9UBZ4 PharmGKB:PA38474 InParanoid:Q9UBZ4
OMA:FIDSYRC PhylomeDB:Q9UBZ4 GenomeRNAi:27301 NextBio:50285
ArrayExpress:Q9UBZ4 Bgee:Q9UBZ4 CleanEx:HS_APEX2
Genevestigator:Q9UBZ4 GermOnline:ENSG00000169188 Uniprot:Q9UBZ4
Length = 518
Score = 151 (58.2 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 65/235 (27%), Positives = 104/235 (44%)
Query: 110 CQEDEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLTV-KYGIPGVSNQRGRVITA 168
C+++ P + + LS G G + T+E+ + G ++ + R
Sbjct: 86 CKDNATPVAAEEGLSGLFATQNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEG 145
Query: 169 KFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQ--SE--LRSNSNIIISGDLNVCL 224
K K T I VY P++ R+++ FY +Q +E L + S++II GDLN
Sbjct: 146 KEKTLTLINVYCPHAD---PGRPERLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAH 202
Query: 225 QSIDLANPDKNVKTAGYTVEERRNFRELLDTGL-----------VDAFRHLYPDEEGAYT 273
+ ID + D V + + R + + L + L +D++R P +EGA+T
Sbjct: 203 RPID--HWDA-VNLECFEEDPGRKWMDSLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFT 259
Query: 274 YWSFRNKSARLNNKGWRLDYHLVSEQLA-NNIKDCIIRSDVQGSTHCPVVLRLSL 327
WS AR N G RLDY L L + + + +V GS HCPV LS+
Sbjct: 260 CWSAVT-GARHLNYGSRLDYVLGDRTLVIDTFQASFLLPEVMGSDHCPVGAVLSV 313
>UNIPROTKB|F1RUD3 [details] [associations]
symbol:LOC100519003 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 KO:K10772
OMA:FIDSYRC EMBL:CU856438 RefSeq:XP_003135157.1
Ensembl:ENSSSCT00000013503 GeneID:100519003 KEGG:ssc:100519003
Uniprot:F1RUD3
Length = 515
Score = 144 (55.7 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 65/237 (27%), Positives = 106/237 (44%)
Query: 110 CQEDEVPESFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLTV-KYGIPGVSNQRGRVITA 168
C++ P + + LS G G + T+E+ + G ++ + R
Sbjct: 86 CKDSATPVAAEEGLSGLLATLNGDVNCYGNMDEFTQEELRALDSEGRALLTQHKIRTQDG 145
Query: 169 KFKRFTFITVYVPNSGI-KLKAIDFRMIWDQHFYDYIQ--SE--LRSNSNIIISGDLNVC 223
K T I VY P++ K + + F+M FY +Q +E L + S++II GDLN
Sbjct: 146 DEKSLTVINVYCPHADPGKPERLTFKM----RFYHLLQIRAEALLAAGSHVIILGDLNTA 201
Query: 224 LQSIDLANPDKNVKTAGYTVEERRNFRELLDTGL-----------VDAFRHLYPDEEGAY 272
+ ID + D V + + R + + L + L +D++R+ P ++GA+
Sbjct: 202 HRPID--HWDA-VNLECFEEDPGRKWMDGLLSNLRCQAGSHMGPFIDSYRYFQPKQKGAF 258
Query: 273 TYWSFRNKSARLNNKGWRLDYHLVSEQLA-NNIKDCIIRSDVQGSTHCPV--VLRLS 326
T WS AR N G R+DY L L + + + +V GS HCPV VL +S
Sbjct: 259 TCWSTVT-GARHLNYGSRIDYVLGDRALVMDTFQSSFVLPEVMGSDHCPVGAVLNVS 314
>UNIPROTKB|G3V574 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] InterPro:IPR004808
InterPro:IPR020848 PROSITE:PS00728 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006281 GO:GO:0090305 GO:GO:0045454
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V574
SMR:G3V574 Ensembl:ENST00000557054 ArrayExpress:G3V574 Bgee:G3V574
Uniprot:G3V574
Length = 49
Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/47 (51%), Positives = 29/47 (61%)
Query: 281 SARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
+AR N GWRLDY L+S L + D IRS GS HCP+ L L+L
Sbjct: 3 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 49
>TAIR|locus:2135164 [details] [associations]
symbol:AT4G36050 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR004808 InterPro:IPR010666
Pfam:PF06839 PROSITE:PS51435 Pfam:PF03372 EMBL:CP002687
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 KO:K10772
OMA:FIDSYRC IPI:IPI00517014 RefSeq:NP_974691.2 UniGene:At.22147
UniGene:At.74442 ProteinModelPortal:F4JNY0 SMR:F4JNY0 PRIDE:F4JNY0
EnsemblPlants:AT4G36050.2 GeneID:829761 KEGG:ath:AT4G36050
Uniprot:F4JNY0
Length = 610
Score = 115 (45.5 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 47/158 (29%), Positives = 72/158 (45%)
Query: 160 NQRGRVITAKFKRFTFITVYVPNSGIKLKAIDFRMIWDQHFYDYIQSE----LRSNSNII 215
+Q GR + F VY P + + A D R+ + FY ++ LR +
Sbjct: 134 DQEGRCVITDHGHFVVFNVYGPRA-VADDA-D-RIEFKHRFYGVLERRWECLLRQGRRVF 190
Query: 216 ISGDLNVCLQSIDL--ANPD--KNVKTAGYTVEERRNFRELL-DTG--LVDAFRHLYPDE 268
+ GDLN+ ++D A PD KN E R+ FR LL + G D FR +P+
Sbjct: 191 VVGDLNIAPFAMDRCEAGPDFEKN--------EFRKWFRSLLVERGGSFSDVFRSKHPER 242
Query: 269 EGAYTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKD 306
+ A+T WS + A N G R+D+ LV+ + +D
Sbjct: 243 KDAFTCWS-SSSGAEQFNYGSRIDHILVAGSCLHQDED 279
Score = 68 (29.0 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 29/110 (26%), Positives = 50/110 (45%)
Query: 72 VKVSTWNVNGLRACVKKNACVEYILEE-NPDIMALQQIRCQEDEVPESFRKSLSHYHMFW 130
+K+ T+NVNGLR V + + +L+ + DI+ Q+ + + E+ + Y F+
Sbjct: 1 MKIVTYNVNGLRQRVSQFDSLLKLLDSFDADIICFQETKLRRQELTADLAIA-DGYESFF 59
Query: 131 I---GSDKGQ---GGVGLLTKEK----------PLTVKYGIPGVSNQRGR 164
S+KG+ GV + K P+T + GI G+ N R
Sbjct: 60 SCTRTSEKGRTGYSGVATFCRVKSASSSCETALPVTAEEGITGLVNSNSR 109
>SGD|S000000115 [details] [associations]
symbol:APN2 "Class II abasic (AP) endonuclease involved in
repair of DNA damage" species:4932 "Saccharomyces cerevisiae"
[GO:0016829 "lyase activity" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IC]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008081
"phosphoric diester hydrolase activity" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IGI] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020848 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 SGD:S000000115
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
GO:GO:0008270 EMBL:BK006936 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
GeneTree:ENSGT00530000063540 GO:GO:0008081 KO:K10772 GO:GO:0008311
OrthoDB:EOG4GQTDH EMBL:Z35780 EMBL:AY693183 PIR:S45753
RefSeq:NP_009534.1 ProteinModelPortal:P38207 DIP:DIP-3930N
IntAct:P38207 MINT:MINT-515848 STRING:P38207 EnsemblFungi:YBL019W
GeneID:852262 KEGG:sce:YBL019W CYGD:YBL019w HOGENOM:HOG000246560
OMA:MYTVWNT NextBio:970856 Genevestigator:P38207 GermOnline:YBL019W
Uniprot:P38207
Length = 520
Score = 100 (40.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 272 YTYWSFRNKSARLNNKGWRLDYHLVSEQLANNIKDCIIRSDVQGSTHCPVVLRLSL 327
YT W+ K+ R +N G R+D+ LVS +L IK I D+ GS HCPV L +
Sbjct: 309 YTVWNML-KNLRPSNYGSRIDFILVSLKLERCIKAADILPDILGSDHCPVYSDLDI 363
Score = 76 (31.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 43/176 (24%), Positives = 76/176 (43%)
Query: 69 TTKVKVSTWN-VNGLRACV-----KKN----ACVEYILEEN-PDIMALQQIRCQEDEVPE 117
T K+ +S W V+G + + +K C I E+N P ALQ ++ +E
Sbjct: 62 TEKLSISKWGRVDGFYSFISIPQTRKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGY 121
Query: 118 SFRKSLSHYHMFWIGSDKGQGGVGLLTKEKPLTVKYGIPGVSNQRGRVITAKFK-RFTFI 176
K+ H + + +D QG G + + L K + + GR + + I
Sbjct: 122 LTIKNGKHSAISY-RNDVNQGIGGYDSLDPDLDEKSALE--LDSEGRCVMVELACGIVII 178
Query: 177 TVYVP-NSGIKLKAIDFRMIWDQHFYDYIQSELRSNSNIIISGDLNVCLQSIDLAN 231
+VY P NS + FR+ + + +++ + I++ GD+NVC ID A+
Sbjct: 179 SVYCPANSNSSEEGEMFRLRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSAD 234
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 327 327 0.00088 116 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 57
No. of states in DFA: 616 (65 KB)
Total size of DFA: 239 KB (2129 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.89u 0.08s 29.97t Elapsed: 00:00:13
Total cpu time: 29.91u 0.08s 29.99t Elapsed: 00:00:13
Start: Thu Aug 15 14:46:56 2013 End: Thu Aug 15 14:47:09 2013